Guillaume, Bryan, Hua, Xue, Thompson, Paul M., Waldorp, Lourens and Nichols, Thomas E.. (2014) Fast and accurate modelling of longitudinal and repeated measures neuroimaging data. NeuroImage . ISSN 1053-8119 (In Press)

Hofstetter, L., Naegelin, Y., Filli, L., Kuster, P., Traud, S., Smieskova, R., Mueller-Lenke, N., Kappos, L., Gass, A., Sprenger, T., Penner, I. -K., Nichols, T. E. , Vrenken, H., Barkhof, F., Polman, C., Radue, E. -W., Borgwardt, S. J. and Bendfeldt, K.. (2014) Progression in disability and regional grey matter atrophy in relapsing-remitting multiple sclerosis. Multiple Sclerosis Journal, Volume 20 (Number 2). pp. 202-213. ISSN 1352-4585

. (2014) The ENIGMA Consortium : large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging and Behavior . ISSN 1931-7557 (In Press)

Durnez, Joke, Moerkerke, Beatrijs and Nichols, Thomas E.. (2014) Post-hoc power estimation for topological inference in fMRI. NeuroImage, Volume 84 . pp. 45-64. ISSN 1053-8119

. (2013) Transcriptomics of cortical gray matter thickness decline during normal aging. NeuroImage, Volume 82 . pp. 273-283. ISSN 1053-8119

. (2013) Multi-site genetic analysis of diffusion images and voxelwise heritability analysis : a pilot project of the ENIGMA–DTI working group. NeuroImage, Volume 81 . pp. 455-469. ISSN 1053-8119

Thompson, Paul M., Ge, Tian, Glahn, David C., Jahanshad, Neda and Nichols, Thomas E.. (2013) Genetics of the connectome. NeuroImage, Volume 80 . pp. 475-488. ISSN 1053-8119

Zeller, Mario, Müller, Alexander, Gutberlet, Marcel, Nichols, Thomas E., Hahn, Dietbert, Köstler, Herbert and Bartsch, Andreas J.. (2013) Boosting BOLD fMRI by K-Space density weighted echo planar imaging. PLoS One, Volume 8 (Number 9). Article number e74501. ISSN 1932-6203

Johnson, T. D., Liu, Z., Bartsch, A. J. and Nichols, Thomas E.. (2013) A Bayesian non-parametric Potts model with application to pre-surgical FMRI data. Statistical Methods in Medical Research , Volume 44 (Number 2). pp. 364-381. ISSN 0962-2802

Sorrentino, Alberto, Johansen, Adam M., Aston, John A. D., Nichols, Thomas E. and Kendall, W. S.. (2013) Dynamic filtering of static dipoles in magnetoencephalography. Annals of Applied Statistics, Volume 7 (Number 2). pp. 955-988. ISSN 1932-6157

Durnez, Joke, Moerkerke, Beatrijs, Bartsch, Andreas and Nichols, Thomas E.. (2013) Alternative-based thresholding with application to presurgical fMRI. Cognitive, Affective, & Behavioral Neuroscience, Volume 13 (Number 4). pp. 703-713. ISSN 1530-7026

Smith, Stephen M., Vidaurre, Diego, Beckmann, Christian F., Glasser, Matthew F., Jenkinson, Mark, Miller, Karla L., Nichols, Thomas E., Robinson, Emma C., Salimi-Khorshidi, Gholamreza, Woolrich, Mark W., Barch, Deanna M., Uğurbil, Kamil and Van Essen, David C.. (2013) Functional connectomics from resting-state fMRI. Trends in Cognitive Sciences, Volume 17 (Number 12). pp. 666-682. ISSN 1364-6613

Douaud, G., Refsum, H., de Jager, C. A., Jacoby, R., Nichols, Thomas E., Smith, S. M. and Smith, A. D.. (2013) Preventing Alzheimer's disease-related gray matter atrophy by B-vitamin treatment. Proceedings of the National Academy of Sciences of the United States of America, Volume 110 (Number 23). pp. 9523-9528. ISSN 0027-8424

Ge, Tian, Feng, Jianfeng, Hibar, Derrek P., Thompson, Paul M. and Nichols, Thomas E.. (2012) Increasing power for voxel-wise genome-wide association studies : the random field theory, least square kernel machines and fast permutation procedures. NeuroImage, Vol.63 (No.2). pp. 858-873. ISSN 1053-8119

Nichols, Thomas E.. (2012) Multiple testing corrections, nonparametric methods, and random field theory. NeuroImage, Vol.62 (No.2). pp. 811-815. ISSN 1053-8119

(2012) Genetic variation in GOLM1 and prefrontal cortical volume in Alzheimer's disease. Neurobiology of Aging, Vol.33 (No.3). pp. 457-465. ISSN 0197-4580

Bendfeldt, Kerstin, Klöppel, Stefan, Nichols, Thomas E., Smieskova, Renata, Kuster, Pascal, Traud, Stefan, Mueller-Lenke, Nicole, Naegelin, Yvonne, Kappos, Ludwig, Radue, Ernst-Wilhelm and Borgwardt, Stefan J.. (2012) Multivariate pattern classification of gray matter pathology in multiple sclerosis. NeuroImage, Vol.60 (No.1). pp. 400-408. ISSN 1053-8119

Minas, Giorgos, Rigat, Fabio, 1975-, Nichols, Thomas E., Aston, John A. D. and Stallard, Nigel. (2012) A hybrid procedure for detecting global treatment effects in multivariate clinical trials : theory and applications to fMRI studies. Statistics in Medicine, Vol.31 (No.3). pp. 253-268. ISSN 0277-6715

Comley, Robert A., Cervenka, Simon, Palhagen, Sven E., Panagiotidis, Georgios, Matthews, Julian C., Lai, Robert Y., Halldin, Christer, Farde, Lars, Nichols, Thomas E. and Whitcher, Brandon J.. (2012) A comparison of gray matter density in restless legs syndrome patients and matched controls using voxel-based morphometry. Journal of Neuroimaging, Vol.22 (No.1). pp. 28-32. ISSN 1051-2284

. (2012) Identification of common variants associated with human hippocampal and intracranial volumes. Nature Genetics, Vol.44 (No.5). pp. 552-561. ISSN 1061-4036

Winkler, Anderson M., Sabuncu, Mert R., Yeo, B.T. Thomas, Fischl, Bruce, Greve, Douglas N., Kochunov, Peter, Nichols, Thomas E., Blangero, John and Glahn, David C.. (2012) Measuring and comparing brain cortical surface area and other areal quantities. NeuroImage, Volume 61 (Number 4). pp. 1428-1443. ISSN 1053-8119

Cole, D. M., Beckmann, C. F., Searle, G. E., Plisson, C., Tziortzi, A. C., Nichols, Thomas E., Gunn, R. N., Matthews, P. M., Rabiner, E. A. and Beaver, J. D.. (2012) Orbitofrontal connectivity with resting-state networks is associated with midbrain dopamine D3 receptor availability. Cerebral Cortex, Volume 22 (Number 12). pp. 2784-2793. ISSN 1047-3211

Filli, L., Hofstetter, L., Kuster, P., Traud, S., Mueller-Lenke, N., Naegelin, Y., Kappos, L., Gass, A., Sprenger, T., Nichols, Thomas E., Vrenken, H., Barkhof, F., Polman, C., Radue, E. -W., Borgwardt, S. J. and Bendfeldt, K.. (2012) Spatiotemporal distribution of white matter lesions in relapsing-remitting and secondary progressive multiple sclerosis. Multiple Sclerosis Journal, Vol.18 (No.11). pp. 1577-1584. ISSN 1352-4585

Smith, S. M. , Bandettini, P. A., Miller, K. L., Behrens, T. E. J., Friston, K. J. (Karl J.), David, O., Liu, T., Woolrich, M. W. and Nichols, T. E. . (2012) The danger of systematic bias in group-level FMRI-lag-based causality estimation. NeuroImage, Vol.59 (No.2). pp. 1228-1229. ISSN 1053-8119

Kochunov, Peter, Glahn, David C., Nichols, Thomas E., Winkler, Anderson M., Hong, Elliot L., Holcomb, Henry H., Stein, Jason L., Thompson, Paul M., Curran, Joanne E., Carless, Melanie A., Olvera, Rene L., Johnson, Matthew P., Cole, Shelley A., Kochunov, Valeria, Kent, Jack and Blangero, John. (2011) Genetic analysis of cortical thickness and fractional anisotropy of water diffusion in the brain. Frontiers in Neuroscience, Vol.5 . p. 120. ISSN 1662-4548

Silver, Matt, Montana, Giovanni and Nichols, Thomas E.. (2011) False positives in neuroimaging genetics using voxel-based morphometry data. NeuroImage, Vol.54 (No.2). pp. 992-1000. ISSN 10538119

Ginestet, Cedric E., Nichols, Thomas E., Bullmore, Edward T. and Simmons, Andrew. (2011) Brain network analysis : separating cost from topology using cost-integration. PLoS ONE, Vol.6 (No.7). Article: e21570. ISSN 1932-6203

Salimi-Khorshidi, Gholamreza, Nichols, Thomas E., Smith, Stephen M. and Woolrich, Mark W.. (2011) Using gaussian-process regression for meta-analytic neuroimaging inference based on sparse observations. IEEE Transactions on Medical Imaging, Vol.30 (No.7). pp. 1401-1416. ISSN 0278-0062

Yarkoni, Tal, Poldrack, Russell A., Nichols, Thomas E., Van Essen, David and Wager, Tor D.. (2011) Large-scale automated synthesis of human functional neuroimaging data. Nature Methods, Vol.8 (No.8). pp. 665-670. ISSN 1548-7091

Yarkone, T., Poldrack, Russell A., Nichols, Thomas E., Van Essen, David and Wager, Tor D. (2011) Large-scale automated decoding of human brain activity. In: Cognitive Neuroscience (CSN), San Francisco, CA, U.S.A., Apr 2-5, 2011 (Unpublished)

Kang, Jian, Nichols, Thomas E., Johnson, Timothy D. and Wager, Tor D.. (2011) Meta analysis of functional neuroimaging data via Bayesian spatial point processes. Journal of the American Statistical Association, Vol.106 (No.493). pp. 124-134. ISSN 0162-1459

Kang, J. (Jian), Johnson, T. D., Nichols, Thomas E., Barrett, L. F. and Wager, Tor D. (2011) A Bayesian spatial point process classification model with application to functional neuroimaging inverse inference. In: ENAR Spring Meeting, Miami, FL, U.S.A., Mar 20-23, 2011

Nichols, Thomas E. (2011) Estimating community structure in resting state data with Erdös-Renyi mixture models. In: Networks in the Human Brain Conference, Max Planck Institute for Human Cognitive & Brain Sciences, 7-8 Mar 2011

Johnson, T. D., Nichols, Thomas E. and Radue, E.-W. (Ernst-Wilhelm) (2011) Identifying spatial differences in multiple sclerosis subtypes via a marked log Gaussian Cox process. In: ENAR Spring Meeting, Miami, FL, U.S.A., 20-23 Mar 2011

Nichols, Thomas E. (2011) Towards spatial regularization to improve heritability estimates. In: Idea Lab workshop, Imperial College, London, U.K., Feb 11, 2011 (Unpublished)

Nichols, Thomas E. (2011) Statistical challenges in fMRI : optimizing fMRI designs & random field theory cluster mass inference. In: MASDOC Research Overview, University of Warwick, Coventry, UK, 8 Feb 2011 (Unpublished)

Salimi-Khorshidi, Gholamreza, Smith, Stephen M., 1968- and Nichols, Thomas E.. (2011) Adjusting the effect of nonstationarity in cluster-based and TFCE inference. NeuroImage, Vol.54 (No.3). pp. 2006-2019. ISSN 1053-8119

Poldrack, Russell A., Mumford, Jeanette A., 1975- and Nichols, Thomas E. (2011) Handbook of functional MRI data analysis. Cambridge, U.K.: Cambridge University Press. ISBN 9780521517669

Bendfeldt, Kerstin, Hofstetter, Louis, Kuster, Pascal, Traud, Stefan, Mueller-Lenke, Nicole, Naegelin, Yvonne, Kappos, Ludwig, Gass, Achim, Nichols, Thomas E., Barkhof, Frederik, Vrenken, Hugo, Roosendaal, Stefan D., Geurts, Jeroen J.G., Radue, Ernst-Wilhelm and Borgwardt, Stefan J.. (2011) Longitudinal gray matter changes in multiple sclerosis-differential scanner and overall disease-related effects. Human Brain Mapping, Vol.33 (No.5). pp. 1225-1245. ISSN 1065-9471

Nichols, Thomas E. and Mumford, Jeanette A., 1975- (2011) Notes on fMRI power. In: MRC Cognition & Brain Unit, Cambridge University, 31 Jan 2011 (Unpublished)

Nichols, Thomas E. (2011) Point process modelling for group fMRI, neuroimaging meta analysis, & multiple sclerosis lesion data. In: Welcome Department of Cognitive Neurology Methods Seminar, University College London, London, U.K., Mar 3, 2011 (Unpublished)

Nichols, Thomas E. (2011) Role of permutation inference in functional MRI clinical trials. In: Merck & Co, Biometrics Group, Rahway, USA, 21 Mar 2011 (Unpublished)

Dixson, Luanna, Ridler, Khanum, Nichols, Thomas E., Saemann, Philipp G., Auer, Dorothee P., Holsboer, Florian, Muglia, Pierandrea, Matthews, Paul M. and Inkster, Becky. (2011) Thyroid hormone transporter genes and grey matter changes in patients with major depressive disorder and healthy controls. Psychoneuroendocrinology, Vol.36 (No.6). pp. 929-934. ISSN 0306-4530

(2011) Validation and pilot application of [18F]FDG-PET in evaluation of a metabolic therapy for Alzheimer's disease. In: Ashford, J. Wesson and Rosen, Allyson and Adamson, Maheen and Bayley, Peter and Sabri, Osama and Furst, Ansgar and Black, Sandra E. and Weiner, Michael , (eds.) Handbook of imaging the Alzheimer brain (Advances in Alzheimer's Disease, vol. 2). Amsterdam: IOS Press, pp. 627-642. ISBN 9781607507925

Nichols, Thomas E. (2010) Modelling & inference of brain imaging data. In: Decision Research @ Warwick, University of Warwick, Coventry, UK, Dec 7, 2010 (Unpublished)

Verchinski, B. A., Inkster, Becky, Gambale, C., Nichols, Thomas E., Matthews, Paul M., Zoltick, B., Zhang, F., Goldman, A. L., Mattay, V. S., Weinberger, Daniel R. (Daniel Roy) and Tost, H. (2010) Effects of a common variant in GSK3 on hippocampal volume in healthy human volunteers. In: American College of Neuropsychopharmacology, 49th Annual Meeting, Miami Beach, FL, U.S.A., Dec 5-9, 2010

Nichols, Thomas E. (2010) Point process modelling of brain image data. In: Statistical Science Seminar, Department of Mathematics, Imperial College, London, U.K., Nov 19, 2010 (Unpublished)

Alzheimers Disease Neuroimaging Initiative (Including: Vounou, Maria, Nichols, Thomas E. and Montana, Giovanni). (2010) Discovering genetic associations with high-dimensional neuroimaging phenotypes: a sparse reduced-rank regression approach. NeuroImage, Vol.53 (No.3). pp. 1147-1159. ISSN 1053-8119

Inkster, Becky, Nichols, Thomas E., Saemann, Philipp G., Auer, Dorothee P., Holsboer, Florian, Muglia, Pierandrea and Matthews, Paul M.. (2010) Pathway-based approaches to imaging genetics association studies: Wnt signaling, GSK3beta substrates and major depression. NeuroImage, Vol.53 (No.3). pp. 908-917. ISSN 1053-8119

Nichols, Thomas E. (2010) To estimate or infer? Understanding and avoiding ”voodoo correlations” in imaging neuroscience. In: Experimental and Behavioural Forum, University of Warwick, Department of Economics, Oct 28, 2010 (Unpublished)

. (2010) A multi-center randomized proof-of-concept clinical trial applying [18F]FDG-PET for evaluation of metabolic therapy with rosiglitazone XR in mild to moderate Alzheimer's disease. Journal of Alzheimer's Disease, Vol.22 (No.4). pp. 1241-1256. ISSN 1875-8908

Nichols, Thomas E. (2010) Statistical contributions to clinical imaging. In: Statistical Contributions to Clinical Imaging, University Hospital, Department of Surgery, Padova, Italy, 9 Sep 2010 (Unpublished)

Smith, Stephen M., 1968-, Miller, Karla L., Salimi-Khorshidi, Gholamreza, Webster, Matthew, Beckmann, Christian F., Nichols, Thomas E., Ramsey, Joseph D. and Woolrich, Mark W.. (2010) Network modelling methods for FMRI. NeuroImage, Vol.54 (No.2). pp. 875-891. ISSN 1053-8119

Kriegeskorte, Nikolaus, 1971- , Lindquist, Martin A., Nichols, Thomas E., Poldrack, Russell A. and Vul, Edward (2010) Everything you never wanted to know about circular analysis, but were afraid to ask. Journal of Cerebral Blood Flow and Metabolism, Vol.30 (No.9). pp. 1551-1557. ISSN 0271-678X

Nichols, Thomas E. (2010) Threshold-free cluster enhancement (TFCE) : improving power and stability of cluster size inference in brain imaging. In: Joint Statistical Meeting, Vancouver, Canada, Jul 31 - Aug 5, 2010 (Unpublished)

Nichols, Thomas E. (2010) Permutation tests for brain imaging - the interplay with parametric random field theory. In: Statistics for Complex Problems: The Multivariate Permutation Approach and Related Topics, Padova, Italy, Jun 14, 2010 (Unpublished)

Nichols, Thomas E. (2010) To estimate or infer? Lessons from genetics. In: Why Should I Believe Your Model? How To Be a Skeptical Neuroimager, Morning Workshop, 16th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 7 Jun 2010 (Unpublished)

Nichols, Thomas E. and Waldorp, L. (2010) Accurate and computationally efficient analysis of longitudinal fMRI data. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Silver, Matt, Nichols, Thomas E. and Montana, Giovanni (2010) False positives in imaging genetics using nonstationary cluster-size inference. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Kang, J. (Jian), Johnson, Timothy D., Wager, Tor D. and Nichols, Thomas E. (2010) Improving precision and interpretability of meta analyses with a Bayesian hierarchal spatial model. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Salimi-Khorshidi, R., Nichols, Thomas E., Laird, Angela, Fox, Peter T. and Smith, Stephen M., 1968- (2010) Meta-analytic functional connectivity : finding brain regions’ multi-way interactions. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Nichols, Thomas E. (2010) Inference on SPMs : random field theory & alternatives. In: SPM Course, Functional Imaging Laboratory, University of College London, May 13, 2010 (Unpublished)

Bendfeldt, Kerstin, Egger, Hanspeter, Nichols, Thomas E., Loetscher, Patrick, Denier, Niklaus, Kuster, Pascal, Traud, Stefan, Mueller-Lenke, Nicole, Naegelin, Yvonne, Gass, Achim, Kappos, Ludwig, Radue, Ernst-Wilhelm and Borgwardt, Stefan. (2010) Effect of immunomodulatory medication on regional gray matter loss in relapsing–remitting multiple sclerosis — a longitudinal MRI study. Brain Research, Vol.1325 . pp. 174-182. ISSN 0006-8993

Nichols, Thomas E. (2010) RFT in practice : head in the continuum, feet on the lattice. In: Welcome Department of Cognitive Neurology, Methods2 Seminar, University College London, London, U.K., Apr 13, 2010 (Unpublished)

Silver, Matt, Montana, Giovanni and Nichols, Thomas E. (2010) False positives in neuroimaging genetics using cluster-size inference. In: Europena Mathematical Genetics Meeting, University of Oxford, Mar 24-25, 2010 (Unpublished)

Nichols, Thomas E. (2010) Categorical data analysis. In: Tutorial, FMRIB Centre, Oxford University, Feb 10, 2010 (Unpublished)

Nichols, Thomas E. (2010) Mixed effects and group modeling for fMRI data. In: SPM Course, Institute for Empirical Research in Economics, University of Zurich, 18 Feb 2010 (Unpublished)

Bendfeldt, Kerstin, Blumhagen, Jan Ole, Egger, Hanspeter, Loetscher, Patrick, Denier, Niklaus, Kuster, Pascal, Traud, Stefan, Mueller-Lenke, Nicole, Naegelin, Yvonne, Gass, Achim, Hirsch, Jochen, Kappos, Ludwig, Nichols, Thomas E., Radue, Ernst-Wilhelm and Borgwardt, Stefan. (2010) Spatiotemporal distribution pattern of white matter lesion volumes and their association with regional grey matter volume reductions in relapsing-remitting multiple sclerosis. Human Brain Mapping, Vol.31 (No.10). pp. 1542-1555. ISSN 1065-9471

Nichols, Thomas E. (2010) Advances in statistical methods in imaging genetics. In: Genetics, Cognition & Psychosis Program, National Institutes of Health, Jan 21, 2010 (Unpublished)

Nichols, Thomas E., Friston, K. J. (Karl J.), Roiser, Jonathan and Viding, Essi (2010) Dangers of using Falconer’s Heritability estimate with typical imaging genetic sample sizes. In: Poster Session at the 6th International Imaging Genetics Conference, Irvine, CA, U.S.A., Jan 18-19, 2010

Cole, D. M., Beckmann, C. F., Nichols, Thomas E., Searle, G. E., Tziortizi, A. C., Gunn, R. N., Matthews, Paul M., Rabiner, E. A. and Beaver, J. D. (2010) Dopamine D3 receptor availability explains orbitofrontal connectivity with cognitive networks. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Walton, R. (Rachel), Winkler, Anderson M., Blangero, John, Fox, Peter T., Glahn, David C. and Nichols, Thomas E. (2010) Reliable heritability clustering - finding distinct genetic factors that influence cortical thickness. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Inkster, Becky, Rao, Anil W., Ridler, Khanum, Nichols, Thomas E., Saemann, Philipp G., Auer, Dorothee P., Holsboer, Florian, Tozzi, Federica, Muglia, Pierandrea, Merlo-Pich, Emilio and Matthews, Paul M.. (2010) Structural brain changes in patients with recurrent major depressive disorder presenting with anxiety symptoms. Journal of Neuroimaging, Vol.21 (No.4). pp. 375-382. ISSN 10512284

Nichols, Thomas E. (2009) A hierarchical spatial Bayesian model for functional MRI. In: Signal and Image Processing Group Seminars, Department of Computer Science, University of Warwick, Coventry, U.K., Dec 10, 2009 (Unpublished)

Xu, L., Johnson, Timothy D., Nichols, Thomas E. and Nee, Derek E.. (2009) Modeling inter-subject variability in fMRI activation location: a Bayesian hierarchical spatial model. Biometrics, Vol.65 (No.4). pp. 1041-1051. ISSN 0006-341X

Nichols, Thomas E., Xu, L. and Johnson, T. D. (2009) A hierarchical spatial Bayesian model for multisubject functional MRI data. In: Oxford-Warwick Statistics Seminar, University of Warwick, Coventry, UK, 5 Nov 2009 (Unpublished)

Nichols, Thomas E. (2009) Random field theory. In: SPM Short Course, Functional Imaging Laboratory, University College London, Oct 22, 2009 (Unpublished)

Mumford, Jeanette A., 1975- and Nichols, Thomas E.. (2009) Simple group fMRI modeling and inference. NeuroImage, Vol.47 (No.4). pp. 1469-1475. ISSN 1053-8119

Nichols, Thomas E. (2009) Tools for statistical inference in functional & structural brain imaging. In: International Digital Lab Seminar, Warwick Manufacturing Group, University of Warwick, Coventry, U.K., Oct 13, 2009 (Unpublished)

Woolrich, M. W., Beckmann, C. F., Nichols, Thomas E. and Smith, Stephen M., 1968- (2009) Statistical analysis of fMRI data. In: Filippi, Massimo, (ed.) fMRI techniques and protocols. Neuromethods (Vol.41). New York ; London : Humana Press, Inc., pp. 179-236. ISBN 9781603279185

Nichols, Thomas E. (2009) Statistical opportunities in brain imaging: a case study with neuroimaging meta analysis. In: RSS Conference, Edinburgh, Scotland, Sep 7-11, 2009 (Unpublished)

Inkster, Becky, Nichols, Thomas E., Saemann, Philipp G., Auer, Dorothee P., Holsboer, Florian, Muglia, Pierandrea and Matthews, Paul M.. (2009) Association of GSK3β polymorphisms with brain structural changes in major depressive disorder. Archives of General Psychiatry, Vol.66 (No.7). pp. 721-728. ISSN 1538-3636

Nichols, Thomas E. and Poline, Jean-Baptist. (2009) Commentary on Vul et al.'s (2009) "Puzzlingly high correlations in fMRI studies of emotion, personality, and social cognition". Perspectives on Psychological Science, Vol.4 (No.3). pp. 291-293. ISSN 1745-6916

Albin, R. L., Koeppe, Robert Allen, Wernette, K., Zhuang, W., Nichols, Thomas E., Kilbourn, M. R. and Frey, K. A.. (2009) Striatal [11C]dihydrotetrabenazine and [11C]methylphenidate binding in Tourette syndrome. Neurology, Vol.72 (No.16). pp. 1390-1396. ISSN 0028-3878

Salimi-Khorshidi, Gholamreza, Smith, Stephen M., 1968-, Keltner, John R., Wager, Tor D. and Nichols, Thomas E.. (2009) Meta-analysis of neuroimaging data: a comparison of image-based and coordinate-based pooling of studies. NeuroImage, Vol.45 (No.3). pp. 810-823. ISSN 1053-8119

Bendfeldt, Kerstin, Kuster, Pascal, Traud, Stefan, Egger, Hanspeter, Winklhofer, Sebastian, Mueller-Lenke, Nicole, Naegelin, Yvonne, Gass, Achim, Kappos, Ludwig, Matthews, Paul M., Nichols, Thomas E., Radue, E.-W. (Ernst-Wilhelm) and Borgwardt, Stefan. (2009) Association of regional gray matter volume loss and progression of white matter lesions in multiple sclerosis — a longitudinal voxel-based morphometry study. NeuroImage, Vol.45 (No.1). pp. 60-67. ISSN 1053-8119

Johnson, T. D., Xu, Lei, Nichols, Thomas E. and Wager, T. (2009) Spatial point process modelling of group fMRI data analysis. In: ENAR Spring Meeting, San Antonio, TX, U.S.A., Mar 15-18, 2009. Published in: Final program of the 2009 ENAR Spring Meeting p. 56.

Zhang, Hui, Nichols, Thomas E. and Johnson, Timothy D.. (2009) Cluster mass inference via random field theory. NeuroImage, Vol.44 (No.1). pp. 51-61. ISSN 1053-8119

Smith, Stephen M., 1968- and Nichols, Thomas E.. (2009) Threshold-free cluster enhancement: addressing problems of smoothing, threshold dependence and localisation in cluster inference. NeuroImage, Vol.44 (No.1). pp. 83-98. ISSN 1053-8119

Pantazis, Dimitrios, Simpson, Gregory V., Weber, Darren L., Dale, Corby Leslie, 1970-, Nichols, Thomas E. and Leahy, Richard M.. (2009) A novel ANCOVA design for analysis of MEG data with application to a visual attention study. NeuroImage, Vol.44 (No.1). pp. 164-174. ISSN 1053-8119

Salimi-Khorshidi, Gholamreza, Smith, Stephen M., 1968- and Nichols, Thomas E.. (2009) Adjusting the neuroimaging statistical inferences for nonstationarity. Medical Image Computing and Computer-Assisted Intervention – MICCAI 2009 12th International Conference, London, UK, September 20-24, 2009, Proceedings, Part I, Vol.5761 . pp. 992-999. ISSN 0302-9743

Nichols, Thomas E. (2009) Statistical perspective on fMRI data analysis: beyond mass-univariate modelling. In: MICCAI, 12th International Conference, London, U.K., Sep 24, 2009 (Unpublished)

Carter, Cameron S., Heckers, Stephan, Nichols, Thomas E., Pine, Daniel S. and Strother, Stephen. (2008) Optimizing the design and analysis of clinical functional magnetic resonance imaging research studies. Biological Psychiatry, Vol.64 (No.10). pp. 842-849. ISSN 0006-3223

Filippini, Nicola, Rao, Anil, Wetten, Sally, Gibson, Rachel A., Borrie, Michael, Guzman, Danilo, Kertesz, Andrew, Loy-English, Inge, Williams, Julie, Nichols, Thomas, Whitcher, Brandon and Matthews, Paul M.. (2008) Anatomically-distinct genetic associations of APOE ɛ4 allele load with regional cortical atrophy in Alzheimer's disease. NeuroImage, Vol.44 (No.3). pp. 724-728. ISSN 1053-8119

Purkayastha, Sumitra, Wager, Tor D. and Nichols, Thomas E.. (2008) Inferring individual differences in fMRI : finding brain regions with significant within subject correlation. Statistica Sinica, Vol.18 . pp. 1483-1500. ISSN 1017-0405

Wager, Tor D., Lindquist, Martin A., Nichols, Thomas E., Kober, Hedy and Van Snellenberg, Jared X.. (2008) Evaluating the consistency and specificity of neuroimaging data using meta-analysis. NeuroImage, Vol.45 (No.1). S210-S221. ISSN 1053-8119

Mumford, Jeanette A., 1975- and Nichols, Thomas E.. (2008) Power calculation for group fMRI studies accounting for arbitrary design and temporal autocorrelation. NeuroImage, Vol.39 (No.1). pp. 261-268. ISSN 1053-8119

Poldrack, Russell A., Fletcher, Paul C., Henson, Richard N., Worsley, Keith J., Brett, M. (Matthew) and Nichols, Thomas E.. (2007) Guidelines for reporting an fMRI study. NeuroImage, Vol.40 (No.2). pp. 409-414. ISSN 1053-8119

Smith, Stephen M., 1968-, Johansen-Berg, Heidi, Jenkinson, Mark, Rueckert, Daniel, Nichols, Thomas E., Miller, Karla L., Robson, Matthew D., Jones, Derek K., Klein, Johannes C., Bartsch, Andreas J. and Behrens, Timothy E. J.. (2007) Acquisition and voxelwise analysis of multi-subject diffusion data with Tract-Based Spatial Statistics. Nature Protocols, Vol.2 (No.3). pp. 499-503. ISSN 1750-2799

Mumford, Jeanette A., 1975-, Hernandez-Garcia, Luis, Lee, Gregory R. and Nichols, Thomas E.. (2006) Estimation efficiency and statistical power in arterial spin labeling fMRI. NeuroImage, Vol.33 (No.1). pp. 103-114. ISSN 10538119

Smith, Stephen M., 1968-, Jenkinson, Mark, Johansen-Berg, Heidi, Rueckert, Daniel, Nichols, Thomas E., Mackay, Clare E., Watkins, Kate E., Ciccarelli, Olga, Cader, M. Zaheer, Matthews, Paul M. and Behrens, Timothy E. J.. (2006) Tract-based spatial statistics : voxelwise analysis of multi-subject diffusion data. NeuroImage, Vol.31 (No.4). pp. 1487-1505. ISSN 10538119

Zhang, H., Luo, Wen-Lin and Nichols, Thomas E.. (2006) Diagnosis of single-subject and group fMRI data with SPMd. Human Brain Mapping, Vol.27 (No.5). pp. 442-451. ISSN 1065-9471

Mumford, Jeanette A. and Nichols, Thomas E.. (2006) Modeling and inference of multisubject fMRI data. IEEE Engineering in Medicine and Biology Magazine, Vol.25 (No.2). pp. 42-51. ISSN 0739-5175

Friston, K. J. (Karl J.), Penny, William D., Ashburner, John, Kiebel, Stefan J. and Nichols, Thomas E. (2006) Statistical parametric mapping : the analysis of functional brain images. London: Academic Press. ISBN 9780123725608

Lund, Torben E., Madsen, Kristoffer H., Sidaros, Karam, Luo, Wen-Lin and Nichols, Thomas E.. (2005) Non-white noise in fMRI : Does modelling have an impact? NeuroImage, Vol.29 (No.1). pp. 54-66. ISSN 10538119

Nichols, Thomas E., Brett, M. (Matthew), Andersson, Jesper, Wager, Tor D. and Poline, Jean-Baptiste. (2005) Valid conjunction inference with the minimum statistic. NeuroImage, Vol.25 (No.3). pp. 653-660. ISSN 10538119

Pantazis, Dimitrios, Nichols, Thomas E., Baillet, Sylvain and Leahy, Richard M.. (2005) A comparison of random field theory and permutation methods for the statistical analysis of MEG data. NeuroImage, Vol.25 (No.2). pp. 383-394. ISSN 1053-8119

Hayasaka, Satoru and Nichols, Thomas E.. (2004) Combining voxel intensity and cluster extent with permutation test framework. NeuroImage, Vol.23 (No.1). pp. 54-63. ISSN 10538119

Hayasaka, Satoru, Phan, K. Luan, Liberzon, Israel, Worsley, Keith J. and Nichols, Thomas E.. (2004) Nonstationary cluster-size inference with random field and permutation methods. NeuroImage, Vol.22 (No.2). pp. 676-687. ISSN 10538119

Pantazis, Dimitrios, Leahy, Richard M., Nichols, Thomas E. and Styner, Martin Andreas (2004) Statistical surface-based morphometry using a nonparametric approach. In: Symposium on Biomedical Imaging 2004, Arlington, VA, USA, 15th-18th April 2004. Published in: Biomedical Imaging: Nano to Macro, 2004. IEEE International Symposium, Vol.2 pp. 1283-1286.

Nichols, Thomas E. and Luo, Wen-Lin. (2004) Data exploration through model diagnosis. NeuroImage, Vol.13 (No.6). p. 208. ISSN 1053 8119

Hayasaka, Satoru and Nichols, Thomas E. (2004) Combining voxel intensity and cluster extent with a permutation test framework. In: 2004 IEEE International Symposium on Biomedical Imaging : From Nano to Macro, Arlington, VA, 15-18 April 2004. Published in: Biomedical Imaging: Nano to Macro, 2004. IEEE International Symposium

Hayasaka, Satoru and Nichols, Thomas E.. (2003) Validating cluster size inference : random field and permutation methods. NeuroImage, Vol.20 (No.4). pp. 2343-2356. ISSN 10538119

Luo, Wen-Lin and Nichols, Thomas E.. (2003) Diagnosis and exploration of massively univariate neuroimaging models. NeuroImage, Vol. 19 (No. 3). pp. 1014-1032. ISSN 10538119

Wager, Tor D. and Nichols, Thomas E.. (2003) Optimization of experimental design in fMRI : a general framework using a genetic algorithm. NeuroImage, Vol.18 (No.2). pp. 293-309. ISSN 10538119

Phan, K. Luan, Taylor, Stephan F., Welsh, Robert C., Decker, Laura R., Noll, Douglas C., Nichols, Thomas E., Britton, Jennifer C. and Liberzon, Israel. (2003) Activation of the medial prefrontal cortex and extended amygdala by individual ratings of emotional arousal : a fMRI study. Biological Psychiatry, Vol.53 (No.3). pp. 211-215. ISSN 00063223

Nichols, Thomas E. and Hayasaka, Satoru. (2003) Controlling the familywise error rate in functional neuroimaging : a comparative review. Statistical Methods in Medical Research, Vol.12 (No.5). pp. 419-446. ISSN 09622802

Jonides, John, Ching-Yune C., Sylvester, Lacey, Steven C. , Wager, Tor D., Nichols, Thomas E. and Awh, Edward (2003) Modules of working memory. In: Kluwe, Rainer and Lüer, Gerd, 1938- and Rösler, Frank, (eds.) Principles of Learning and Memory. New York: Springer, pp. 113-134. ISBN 978-3-7643-6699-5

Pantazis, Dimitrios, Nichols, Thomas E., Baillet, Sylvain and Leahy, Richard M.. (2003) Spatiotemporal localization of significant activation in MEG using permutation tests. Lecture Notes in Computer Science, Vol.2732 . pp. 512-523. ISSN 0302-9743

Sylvester, Ching-Yune C, Wager, Tor D, Lacey, Steven C, Hernandez, Luis, Nichols, Thomas E, Smith, Edward E and Jonides, John. (2002) Switching attention and resolving interference: fMRI measures of executive functions. Neuropsychologia, Vol. 41 (No. 3). pp. 357-370. ISSN 00283932

Genovese, Christopher R., Lazar, Nicole A. and Nichols, Thomas E.. (2002) Thresholding of statistical maps in functional neuroimaging using the false discovery rate. NeuroImage, Vol.15 (No.4). pp. 870-878. ISSN 10538119

Derbyshire, Stuart W. G., Nichols, Thomas E., Firestone, Leonard L., Townsend, David W., Ph.D. and Jones, Anthony K. P.. (2002) Gender differences in patterns of cerebral activation during equal experience of painful laser stimulation. The Journal of Pain, Vol.3 (No.5). pp. 401-411. ISSN 15265900

Ossadtchi, Alex, Brown, Vanessa M., Khan, Arshad H., Cherry, Simon R., Nichols, Thomas E., Leahy, Richard M. and Smith, Desmond James. (2002) Statistical analysis of multiplex brain gene expression images. Neurochemical Research, Vol.27 (No.10). pp. 1113-1121. ISSN 03643190

Nofzinger, Eric A., Nichols, Thomas E. , Meltzer, Carolyn C. , Price, Julie, Steppe, Doris A. , Miewald, Jean M. , Kupfer, David J. and Moore , Robert Y.. (1999) Changes in forebrain function from waking to REM sleep in depression: preliminary analyses [of 18F]FDG PET studies. Psychiatry Research: Neuroimaging, Vol. 91 (No. 2). pp. 59-78. ISSN 1872-7506

Nichols, Thomas E., Qi, Jinyi and Leahy, Richard M. (1999) Continuous time dynamic PET imaging using list mode data. In: IPMI '99 : 16th International Conference on Information Processing in Medical Imaging, Visegrad, Hungary, June 28 - July 2, 1999. Published in: IPMI '99 Proceedings of the 16th International Conference on Information Processing in Medical Imaging pp. 98-111.

Petersson, K. M., Nichols, Thomas E., Poline, Jean-Baptiste and Holmes, Andrew P.. (1999) Statistical limitations in functional neuroimaging II. Signal detection and statistical inference. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol.354 (No.1387). pp. 1261-1281. ISSN 0962-8436

Petersson, K. M. and Nichols, Thomas E.. (1999) Statistical limitations in functional neuroimaging. I. Non-inferential methods and statistical models. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol.354 (No.1387). pp. 1239-1260. ISSN 0962-8436

Smith, Gwenn S., Price, Julie C., Lopresti, Brian J., Huang, Yiyun, Simpson, N. (Norman), Holt, D. (Daniel), Mason, N. Scott, Meltzer, Carolyn Cidis, Sweet, Robert A., Nichols, Thomas E., Sashin, Donald and Mathis, Chester A.. (1998) Test-retest variability of serotonin 5-HT2A receptor binding measured with positron emission tomography and [18F]altanserin in the human brain. Synapse, Vol.30 (No.4). pp. 380-392. ISSN 0887-4476

Holmes, Andrew P., Watson, John D. G. and Nichols, Thomas E. (1998) Holmes and Watson on 'Sherlock'. Journal of Cerebral Blood Flow & Metabolism, Vol.18 (No.6). p. 697. ISSN 0271-678X

Ganguli, Rohan, Carter, Cameron S., Mintun, Mark A., Brar, Jaspreet, Becker, James T., Sarma, Raj, Nichols, Thomas E. and Bennington, Elizabeth. (1997) PET brain mapping study of auditory verbal supraspan memory versus visual fixation in schizophrenia. Biological Psychiatry, Vol. 41 (No. 1). pp. 33-42. ISSN 00063223

Carter, Cameron S., Mintun, Mark A., Nichols, Thomas E. and Cohen, Jonathan D.. (1997) Anterior cingulate gyrus dysfunction and selective attention deficits in schizophrenia: [15O]H2O PET study during single-trial stroop task performance. The American Journal of Psychiatry, Vol.154 . pp. 1670-1675. ISSN 1535-7228

Herbster, A. N., Nichols, Thomas E., Wiseman, Marybeth, Mintun, Mark A., DeKosky, Steven T. and Becker, James T.. (1996) Functional connectivity in auditory–verbal short-term memory in Alzheimer's disease. NeuroImage, Vol.4 (No.2). pp. 67-77. ISSN 1053 8119

Nichols, Thomas E., Palmer, A. and Becker, James T. (1996) Meta-analysis of auditory verbal short-term memory using positron emission tomography. In: 48th Annual Meeting of the American Academy of Neurology, San Francisco, USA, March 23-30, 1996. Published in: American Academy of Neurology 48th Annual meeting program, Vol.46 (No.2).

Carter, Cameron S., Mintun, Mark A., Cohen, Jonathan D., Nichols, Thomas E. and Wiseman, Marybeth. (1996) Anterior cingulate gyrus dysfunction and attentional pathology in schizophrenia [Abstract]. NeuroImage, Vol.3 (No.3). S477. ISSN 1053 8119

Becker, James T., Mintun, Mark A., Aleva, K., Wiseman, Marybeth, Nichols, Thomas E. and DeKosky, Steven T.. (1996) Compensatory reallocation of brain resources supporting verbal episodic memory in Alzheimer's disease. Neurology, Vol.46 . pp. 692-700. ISSN 1526-632X

Mann, J. John (Joseph John), Malone, Kevin M., Diehl, David J., Perel, James, Nichols, Thomas E. and Mintun, Mark A.. (1996) Positron emission tomographic imaging of serotonin activation effects on prefrontal cortex in healthy volunteers. Journal of Cerebral Blood Flow & Metabolism, Vol.16 . pp. 418-426. ISSN 0271-678X

Clark, Stuart, Dickinson, Mark R. , King, Terence A., Jones, A. (Anthony), Chen, Andrew, Derbyshire, Stuart, Townsend, David W., Ph.D., Kinahan, Paul E. , Mintun, Mark A. and Nichols, Thomas E. (1995) Laser stimulation for pain research. In: Biomedical Optoelectronics in Clinical Chemistry and Biotechnology, Barcelona, Spain, 12 September 1995. Published in: Proceedings of SPIE - International Society for Optical Engineering, Vol.197 pp. 197-205.

Baumann, Stephen B., Noll, Douglas C., Kondziolka, D. (Douglas), 1961-, Schneider, W. (Walter), Nichols, Thomas E., Mintun, Mark A., Lewine, Jeffery D., Yonas, Howard, Orrison, William W. and Sclabassi, Robert. (1995) Comparison of functional magnetic resonance imaging with positron emission tomography and magnetoencephalography to identify the motor cortex in a patient with an arteriovenous malformation. Computer Aided Surgery, Vol.1 (No.4). pp. 191-197. ISSN 1092-9088

Diehl, David J., Keshavan, Matcheri S., 1953-, Kanal, Emanuel, Nebes, R. D. (Robert D.), Nichols, Thomas E. and Gillen, Joseph S.. (1994) Post-ECT increases in MRI regional T2 relaxation times and their relationship to cognitive side effects : a pilot study. Psychiatry Research, Vol.54 (No.2). pp. 177-184. ISSN 01651781

Dixson, L., Ridler, K., Nichols, Thomas E., Rao, A. W., Whitcher, B., Samann, P. G., Auer, Dorothee P., Holsboer, Florian, Muglia, P., Matthews, Paul M. and Inkster, Becky Associations between thyroid hormone transporter gene variants and grey matter volume changes. In: 18th Annual Meeting of the Organization for Human Brain Mapping, Quebec City, Canada, 26-30 Jun 2011

Salimi-Khorshidi, G., Smith, Stephen M., 1968-, Nichols, Thomas E. and Woolrich, M. W. Bayesian Gaussian processes for coordinate-based meta-analysis of neuroimaging reports. In: 18th Annual Meeting of the Organization for Human Brain Mapping, Quebec City, Canada, 26-30 Jun 2011

Nichols, Thomas E. Bayesian spatial models for neuroimaging meta-analysis. In: Health Sciences Seminar, Warwick Medical School, University of Warwick, 22 Sep 2011 (Unpublished)

Dixson, L., Ridler, K., Nichols, Thomas E., Rao, A. W., Whitcher, B., Samann, P. G., Auer, Dorothee P., Holsboer, Florian, Muglia, Pierandrea, Matthews, Paul M. and Inkster, Becky Effects of a common variant in GSK3 on Hippocampal volume in healthy human volunteers. In: 18th Annual Meeting of the Organization for Human Brain Mapping, Quebec City, Canada, 26-30 Jun 2011

Nichols, Thomas E. Finding activations : power, specificity, and selection bias. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Quebec City, Canada, 26 Jun 2011 (Unpublished)

Nichols, Thomas E. Point process modelling for Neuroimaging data. In: [Event not specified], University of North Carolina, 28 Sep 2011 (Unpublished)

Kang, J. (Jian), Johnson, T. D., Nichols, Thomas E., Wager, Tor D. and Barrett, L. F. Reverse-inference for meta-analysis : predicting study type with a fully Bayesian spatial model. In: 18th Annual Meeting of the Organization for Human Brain Mapping, Quebec City, Canada, 26-30 Jun 2011

Nichols, Thomas E. and Waldrop, L. Smoothed sandwich to replace MFX in longitudinal fMRI. In: 18th Annual Meeting of the Organization for Human Brain Mapping, Quebec City, Canada, 26-30 Jun 2011

Yarkoni, T., Poldrack, Russell A., Nichols, Thomas E., Van Essen, David and Wager, Tor D. Towards large-scale automated synthesis of the human neuroimaging literature. In: 18th Annual Meeting of the Organization for Human Brain Mapping, Quebec City, Canada, 26-30 Jun 2011