2017

Gutierrez-Barragan, Felipe, Ithapu, Vamsi K., Hinrichs, Chris, Maumet, Camille, Johnson, Sterling C., Nichols, Thomas E. and Singh, Vikas. (2017) Accelerating permutation testing in voxel-wise analysis through subspace tracking : a new plugin for SnPM. NeuroImage, 159 . pp. 79-98. ISSN 1053-8119

Eklund, Anders, Nichols, Thomas E. and Knutsson, Hans (2017) Reply to Brown and Behrmann, Cox, et al., and Kessler et al. : Data and code sharing is the way forward for fMRI. Proceedings of the National Academy of Sciences of the United States of America, 114 (7). E3374-E3375. ISSN 0027-8424

Nichols, Thomas E., Das, Samir, Eickhoff, Simon B., Evans, Alan C., Glatard, Tristan, Hanke, Michael, Kriegeskorte, Nikolaus, Milham, Michael P., Poldrack, Russell A., Poline, Jean-Baptiste, Proal, Erika, Thirion, Bertrand, Van Essen, David C., White, Tonya and Yeo, B.T. Thomas. (2017) Best practices in data analysis and sharing in neuroimaging using MRI. Nature Neuroscience, 20 (3). pp. 299-303. ISSN 1097-6256

Nichols, Thomas E., Eklund, Anders and Knutsson, Hans. (2017) A defense of using resting state fMRI as null data for estimating false positive rates. Cognitive Neuroscience . ISSN 1758-8928 (In Press)

Poldrack, Russell A., Baker, Chris I., Durnez, Joke, Gorgolewski, Krzysztof J., Matthews, Paul M., Munafò, Marcus R., Nichols, Thomas E., Poline, Jean-Baptiste, Vul, Edward and Yarkoni, Tal. (2017) Scanning the horizon : towards transparent and reproducible neuroimaging research. Nature Reviews Neuroscience . ISSN 1471-003X

2016

Maumet, Camille, Auer, Tibor, Bowring, Alexander, Chen, Gang, Das, Samir, Flandin, Guillaume, Ghosh, Satrajit, Glatard, Tristan, Gorgolewski, Krzysztof J., Helmer, Karl G., Jenkinson, Mark, Keator, David B., Nichols, B. Nolan, Poline, Jean-Baptiste, Reynolds, Richard, Sochat, Vanessa, Turner, Jessica and Nichols, Thomas E.. (2016) Sharing brain mapping statistical results with the neuroimaging data model. Scientific Data, 3 . 160102. ISSN 2052-4463

Gonzalez-Castillo, Javier, Chen, Gang, Nichols, Thomas E. and Bandettini, Peter A.. (2016) Variance decomposition for single-subject task-based fMRI activity estimates across many sessions. NeuroImage . ISSN 1053-8119

Eickhoff, Simon B., Nichols, Thomas E., Laird, Angela R., Hoffstaedter, Felix, Amunts, Katrin, Fox, Peter T., Bzdok, Danilo and Eickhoff, Claudia R.. (2016) Behavior, sensitivity, and power of activation likelihood estimation characterized by massive empirical simulation. NeuroImage, 137 . pp. 70-85. ISSN 1053-8119

Kueh, Audrey, Warnett, Jason M., Gibbons, Gregory John, Brettschneider, Julia, Nichols, Thomas E., Williams, M. A. and Kendall, Wilfrid S.. (2016) Modelling the penumbra in computed tomography. Journal of X-Ray Science and Technology, 24 (4). pp. 583-597.

Eklund, Anders, Nichols, Thomas E. and Knutsson, Hans. (2016) Cluster failure : why fMRI inferences for spatial extent have inflated false-positive rates. Proceedings of the National Academy of Sciences of the United States of America, 113 (28). pp. 7900-7905. ISSN 0027-8424

Pauli, Ruth, Bowring, Alexander, Reynolds, Richard, Chen, Gang, Nichols, Thomas E. and Maumet, Camille. (2016) Exploring fMRI Results Space : 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM. Frontiers in neuroinformatics, 10 . 24. ISSN 1662-5196

. (2016) The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Scientific Data, 3 . 160044. ISSN 2052-4463

Kueh, Audrey, Warnett, J. W., Gibbons, Gregory John, Brettschneider, Julia, Nichols, Thomas E., Williams, M. A. (Mark A.) and Kendall, Wilfrid S. (2016) Dataset to support article : 'Modelling the Penumbra in Computed Tomography'. [Dataset]

Winkler, Anderson M., Webster, Matthew A., Brooks, Jonathan C., Tracey, Irene, Smith, Stephen M. and Nichols, Thomas E.. (2016) Non-parametric combination and related permutation tests for neuroimaging. Human Brain Mapping . ISSN 1065-9471 (In Press)

Tao, Chenyang, Nichols, Thomas E., Hua, Xue, Ching, Christopher R. K., Rolls, Edmund T., Thompson, Paul M. and Feng, Jianfeng. (2016) Generalized reduced rank latent factor regression for high dimensional tensor fields, and neuroimaging-genetic applications. NeuroImage, 144 (Part A). pp. 35-57. ISSN 1053-8119

2015

Li, Huanjie, Nickerson, Lisa D., Zhao, Xuna, Nichols, Thomas E. and Gao, Jia-Hong. (2015) A voxelation-corrected non-stationary 3D cluster-size test based on random field theory. NeuroImage, 118 . pp. 676-682. ISSN 1053-8119

Winkler, Anderson M., Webster, Matthew A., Vidaurre, Diego, Nichols, Thomas E. and Smith, Stephen M.. (2015) Multi-level block permutation. NeuroImage . ISSN 1053-8119 (In Press)

Rolls, Edmund T., Kellerhals, Michele B. and Nichols, Thomas E.. (2015) Age differences in the brain mechanisms of good taste. NeuroImage, 113 . pp. 298-309. S105381191500261X. ISSN 1053-8119

Gorgolewski, Krzysztof J., Varoquaux, Gael, Rivera, Gabriel, Schwarz, Yannick, Ghosh, Satrajit S., Maumet, Camille, Sochat, Vanessa V., Nichols, Thomas E., Poldrack, Russell A., Poline, Jean-Baptiste, Yarkoni, Tal and Margulies, Daniel. (2015) NeuroVault.org : a web-based repository for collecting and sharing unthresholded statistical maps of the human brain. Frontiers in neuroinformatics, 9 . pp. 1-9. 8. ISSN 1662-5196

. (2015) Common genetic variants influence human subcortical brain structures. Nature, Volume 520 (Number 7546). pp. 224-229. ISSN 0028-0836

Ge, Tian, Nichols, Thomas E. , Ghosh, Debashis, Mormino, Elizabeth C., Smoller, Jordan W. and Sabuncu, Mert R.. (2015) A kernel machine method for detecting effects of interaction between multidimensional variable sets : an imaging genetics application. NeuroImage, Volume 109 . pp. 505-514. ISSN 1053-8119

Ge, Tian, Nichols, Thomas E., Lee, Phil H., Holmes, Avram J., Roffman, Joshua L., Buckner, Randy L., Sabuncu , Mert R. and Smoller, Jordan W.. (2015) Massively expedited genome-wide heritability analysis (MEGHA). Proceedings of the National Academy of Sciences of the United States of America, Volume 112 (Number 8). pp. 2479-2484. ISSN 0027-8424

Costa, Lilia, Smith, James Q., Nichols, Thomas E., Cussens, James, Duff, Eugene P. and Makin, Tamar R.. (2015) Searching multiregression dynamic models of resting-state fMRI networks using integer programming. Bayesian Analysis, 10 (2). pp. 441-478. ISSN 1931-6690

2014

Oates, Chris J., Costa, Liliana M. and Nichols, Thomas E.. (2014) Toward a multisubject analysis of neural connectivity. Neural Computation . pp. 1-20. ISSN 0899-7667 (In Press)

Kang, Jian, Nichols, Thomas E., Wager, Tor D. and Johnson, Timothy D.. (2014) A Bayesian hierarchical spatial point process model for multi-type neuroimaging meta-analysis. The Annals of Applied Statistics, Volume 8 (Number 3). pp. 1800-1824. ISSN 1932-6157

Ashbrook, David G., Williams, Robert W., Lu, Lu, Stein, Jason L., Hibar, Derrek P., Nichols, Thomas E., Medland, Sarah E., Thompson, Paul M. and Hager, Reinmar. (2014) Joint genetic analysis of hippocampal size in mouse and human identifies a novel gene linked to neurodegenerative disease. BMC Genomics, Volume 15 (Number 1). Article number 850. ISSN 1471-2164

The IMAGEN consortium (Including:

). (2014) Correction: Global genetic variations predict brain response to faces. PLoS Genetics, Volume 10 (Number 10). Article number e1004802. ISSN 1553-7390

Pavlovic, Dragana M., Vértes, Petra E., Bullmore, Edward T., Schafer, William R. and Nichols, Thomas E.. (2014) Stochastic blockmodeling of the modules and core of the caenorhabditis elegans connectome. PLoS One, Volume 9 (Number 7). Article number e97584. ISSN 1932-6203

Guillaume, Bryan, Hua, Xue, Thompson, Paul M., Waldorp, Lourens and Nichols, Thomas E.. (2014) Fast and accurate modelling of longitudinal and repeated measures neuroimaging data. NeuroImage, Volume 94 . pp. 287-302. ISSN 1053-8119

Koran, Mary Ellen, Thornton-Wells, Tricia A., Jahanshad, Neda, Glahn, David C., Thompson, Paul M., Blangero, John, Nichols, Thomas E., Kochunov, Peter and Landman, Bennett A.. (2014) Impact of family structure and common environment on heritability estimation for neuroimaging genetics studies using Sequential Oligogenic Linkage Analysis Routines. Journal of Medical Imaging , Volume 1 (Number 1). Article number 014005. ISSN 2329-4302

Hua, W. -Y., Nichols, Thomas E. and Ghosh, D.. (2014) Multiple comparison procedures for neuroimaging genomewide association studies. Biostatistics, Volume 16 (Number 1). pp. 17-30. ISSN 1465-4644

ENIGMA Consortium (Including: Nichols, Thomas E.). (2014) The ENIGMA Consortium : large-scale collaborative analyses of neuroimaging and genetic data. Brain Imaging and Behavior, Volume 8 (Number 2). pp. 153-182. ISSN 1931-7557

Winkler, Anderson M., Ridgway, Gerard R., Webster, Matthew A., Smith, Stephen M. and Nichols, Thomas E.. (2014) Permutation inference for the general linear model. NeuroImage, Volume 2 . pp. 381-397. ISSN 1053-8119

Koran, Mary Ellen, Li, Bo, Jahanshad, Neda, Thornton-Wells, Tricia A., Glahn, David C., Thompson, Paul M., Blangero, John, Nichols, Thomas E., Kochunov, Peter and Landman, Bennett A. (2014) On study design in neuroimaging heritability analyses. In: Medical Imaging 2014: Image Processing, San Diego, California, USA, 15 Feb 2014. Published in: Proceedings of SPIE 9034, Medical Imaging 2014: Image Processing, Volume 9034

Hofstetter, L., Naegelin, Y., Filli, L., Kuster, P., Traud, S., Smieskova, R., Mueller-Lenke, N., Kappos, L., Gass, A., Sprenger, T., Penner, I. -K., Nichols, Thomas E., Vrenken, H., Barkhof, F., Polman, C., Radue, E. -W., Borgwardt, S. J. and Bendfeldt, K.. (2014) Progression in disability and regional grey matter atrophy in relapsing-remitting multiple sclerosis. Multiple Sclerosis Journal, Volume 20 (Number 2). pp. 202-213. ISSN 1352-4585

Ge, Tian, Müller-Lenke, Nicole, Bendfeldt, Kerstin, Nichols, Thomas E. and Johnson, Timothy D.. (2014) Analysis of multiple sclerosis lesions via spatially varying coefficients. The Annals of Applied Statistics, Volume 8 (Number 2). pp. 1095-1118. ISSN 1932-6157

Pernet, Cyril, Latinus, Marianne, Nichols, Thomas E. and Rousselet, Guillaume Alexis. (2014) Cluster-based computational methods for mass univariate analyses of event-related brain potentials/fields : a simulation study. Journal of Neuroscience Methods . ISSN 0165-0270 (In Press)

Kueh, Audrey, Kendall, Wilfrid S. and Nichols, Thomas E. (2014) Modelling the penumbra in computed tomography. Working Paper. Coventry, UK: University of Warwick. Centre for Research in Statistical Methodology. CRiSM Working Paper Series, 14-25 . (Unpublished)

Durnez, Joke, Moerkerke, Beatrijs and Nichols, Thomas E.. (2014) Post-hoc power estimation for topological inference in fMRI. NeuroImage, Volume 84 . pp. 45-64. ISSN 1053-8119

Brettschneider, Julia, Thornby, John Albert, Nichols, Thomas E. and Kendall, Wilfrid S. (2014) Spatial analysis of dead pixels. Working Paper. Coventry, UK: University of Warwick. Centre for Research in Statistical Methodology. CRiSM Working Paper Series (Number 14-24). (Unpublished)

Taschler, Bernd, Ge, Tian, Bendfeldt, Kerstin, Müller-Lenke, Nicole, Johnson, Timothy D. and Nichols, Thomas E. (2014) Spatial modeling of multiple sclerosis for disease subtype prediction. In: Golland, Polina and Hata, Nobuhiko and Barillot, Christian and Haronegger, Joachim and Howe, Robert, (eds.) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014 : 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part II. Lecture Notes in Computer Science, Volume 8674 . Springer International Publishing, pp. 797-804. ISBN 9783319104690

2013

Small, N., Hazra, S. (Sumit), Williams, D., Roy, R., Nichols, Thomas E., Aylmore, R. and Hollingdale, D. (2013) Determining a probabilistic forming limit curve. In: The 9th International conference and workshop on numerical simulation of 3D sheet metal forming process, Melbourne, Australia, 6-10 Jan 2014. Published in: AIP Conference Proceedings, 1567

. (2013) Transcriptomics of cortical gray matter thickness decline during normal aging. NeuroImage, Volume 82 . pp. 273-283. ISSN 1053-8119

. (2013) Multi-site genetic analysis of diffusion images and voxelwise heritability analysis : a pilot project of the ENIGMA–DTI working group. NeuroImage, Volume 81 . pp. 455-469. ISSN 1053-8119

Thompson, Paul M., Ge, Tian, Glahn, David C., Jahanshad, Neda and Nichols, Thomas E.. (2013) Genetics of the connectome. NeuroImage, Volume 80 . pp. 475-488. ISSN 1053-8119

Zeller, Mario, Müller, Alexander, Gutberlet, Marcel, Nichols, Thomas E., Hahn, Dietbert, Köstler, Herbert and Bartsch, Andreas J.. (2013) Boosting BOLD fMRI by K-Space density weighted echo planar imaging. PLoS One, Volume 8 (Number 9). Article number e74501. ISSN 1932-6203

Johnson, T. D., Liu, Z., Bartsch, A. J. and Nichols, Thomas E.. (2013) A Bayesian non-parametric Potts model with application to pre-surgical FMRI data. Statistical Methods in Medical Research , Volume 44 (Number 2). pp. 364-381. ISSN 0962-2802

Sorrentino, Alberto, Johansen, Adam M., Aston, John A. D., Nichols, Thomas E. and Kendall, Wilfrid S.. (2013) Dynamic filtering of static dipoles in magnetoencephalography. Annals of Applied Statistics, Volume 7 (Number 2). pp. 955-988. ISSN 1932-6157

Durnez, Joke, Moerkerke, Beatrijs, Bartsch, Andreas and Nichols, Thomas E.. (2013) Alternative-based thresholding with application to presurgical fMRI. Cognitive, Affective, & Behavioral Neuroscience, Volume 13 (Number 4). pp. 703-713. ISSN 1530-7026

Smith, Stephen M., Vidaurre, Diego, Beckmann, Christian F., Glasser, Matthew F., Jenkinson, Mark, Miller, Karla L., Nichols, Thomas E., Robinson, Emma C., Salimi-Khorshidi, Gholamreza, Woolrich, Mark W., Barch, Deanna M., Uğurbil, Kamil and Van Essen, David C.. (2013) Functional connectomics from resting-state fMRI. Trends in Cognitive Sciences, Volume 17 (Number 12). pp. 666-682. ISSN 1364-6613

Douaud, G., Refsum, H., de Jager, C. A., Jacoby, R., Nichols, Thomas E., Smith, S. M. and Smith, A. D.. (2013) Preventing Alzheimer's disease-related gray matter atrophy by B-vitamin treatment. Proceedings of the National Academy of Sciences of the United States of America, Volume 110 (Number 23). pp. 9523-9528. ISSN 0027-8424

2012

Ge, Tian, Feng, Jianfeng, Hibar, Derrek P., Thompson, Paul M. and Nichols, Thomas E.. (2012) Increasing power for voxel-wise genome-wide association studies : the random field theory, least square kernel machines and fast permutation procedures. NeuroImage, Vol.63 (No.2). pp. 858-873. ISSN 1053-8119

Nichols, Thomas E.. (2012) Multiple testing corrections, nonparametric methods, and random field theory. NeuroImage, Vol.62 (No.2). pp. 811-815. ISSN 1053-8119

(2012) Genetic variation in GOLM1 and prefrontal cortical volume in Alzheimer's disease. Neurobiology of Aging, Vol.33 (No.3). pp. 457-465. ISSN 0197-4580

Bendfeldt, Kerstin, Klöppel, Stefan, Nichols, Thomas E., Smieskova, Renata, Kuster, Pascal, Traud, Stefan, Mueller-Lenke, Nicole, Naegelin, Yvonne, Kappos, Ludwig, Radue, Ernst-Wilhelm and Borgwardt, Stefan J.. (2012) Multivariate pattern classification of gray matter pathology in multiple sclerosis. NeuroImage, Vol.60 (No.1). pp. 400-408. ISSN 1053-8119

Minas, Giorgos, Rigat, Fabio, Nichols, Thomas E., Aston, John A. D. and Stallard, Nigel. (2012) A hybrid procedure for detecting global treatment effects in multivariate clinical trials : theory and applications to fMRI studies. Statistics in Medicine, Vol.31 (No.3). pp. 253-268. ISSN 0277-6715

Comley, Robert A., Cervenka, Simon, Palhagen, Sven E., Panagiotidis, Georgios, Matthews, Julian C., Lai, Robert Y., Halldin, Christer, Farde, Lars, Nichols, Thomas E. and Whitcher, Brandon J.. (2012) A comparison of gray matter density in restless legs syndrome patients and matched controls using voxel-based morphometry. Journal of Neuroimaging, Vol.22 (No.1). pp. 28-32. ISSN 1051-2284

. (2012) Identification of common variants associated with human hippocampal and intracranial volumes. Nature Genetics, Vol.44 (No.5). pp. 552-561. ISSN 1061-4036

Winkler, Anderson M., Sabuncu, Mert R., Yeo, B.T. Thomas, Fischl, Bruce, Greve, Douglas N., Kochunov, Peter, Nichols, Thomas E., Blangero, John and Glahn, David C.. (2012) Measuring and comparing brain cortical surface area and other areal quantities. NeuroImage, Volume 61 (Number 4). pp. 1428-1443. ISSN 1053-8119

Cole, D. M., Beckmann, C. F., Searle, G. E., Plisson, C., Tziortzi, A. C., Nichols, Thomas E., Gunn, R. N., Matthews, Paul M., Rabiner, E. A. and Beaver, J. D.. (2012) Orbitofrontal connectivity with resting-state networks is associated with midbrain dopamine D3 receptor availability. Cerebral Cortex, Volume 22 (Number 12). pp. 2784-2793. ISSN 1047-3211

Filli, L., Hofstetter, L., Kuster, P., Traud, S., Mueller-Lenke, N., Naegelin, Y., Kappos, L., Gass, A., Sprenger, T., Nichols, Thomas E., Vrenken, H., Barkhof, F., Polman, C., Radue, E. -W., Borgwardt, S. J. and Bendfeldt, K.. (2012) Spatiotemporal distribution of white matter lesions in relapsing-remitting and secondary progressive multiple sclerosis. Multiple Sclerosis Journal, Vol.18 (No.11). pp. 1577-1584. ISSN 1352-4585

Smith, Stephen M., Bandettini, P. A., Miller, K. L., Behrens, Timothy E. J., Friston, K. J., David, O., Liu, T., Woolrich, Mark W. and Nichols, Thomas E.. (2012) The danger of systematic bias in group-level FMRI-lag-based causality estimation. NeuroImage, Vol.59 (No.2). pp. 1228-1229. ISSN 1053-8119

2011

Kochunov, Peter, Glahn, David C., Nichols, Thomas E., Winkler, Anderson M., Hong, Elliot L., Holcomb, Henry H., Stein, Jason L., Thompson, Paul M., Curran, Joanne E., Carless, Melanie A., Olvera, Rene L., Johnson, Matthew P., Cole, Shelley A., Kochunov, Valeria, Kent, Jack and Blangero, John. (2011) Genetic analysis of cortical thickness and fractional anisotropy of water diffusion in the brain. Frontiers in Neuroscience, Vol.5 . p. 120. ISSN 1662-4548

Silver, Matt, Montana, Giovanni and Nichols, Thomas E.. (2011) False positives in neuroimaging genetics using voxel-based morphometry data. NeuroImage, Vol.54 (No.2). pp. 992-1000. ISSN 10538119

Ginestet, Cedric E., Nichols, Thomas E., Bullmore, Edward T. and Simmons, Andrew. (2011) Brain network analysis : separating cost from topology using cost-integration. PLoS ONE, Vol.6 (No.7). Article: e21570. ISSN 1932-6203

Salimi-Khorshidi, Gholamreza, Nichols, Thomas E., Smith, Stephen M. and Woolrich, Mark W.. (2011) Using gaussian-process regression for meta-analytic neuroimaging inference based on sparse observations. IEEE Transactions on Medical Imaging, Vol.30 (No.7). pp. 1401-1416. ISSN 0278-0062

Yarkoni, Tal, Poldrack, Russell A., Nichols, Thomas E., Van Essen, David and Wager, Tor D.. (2011) Large-scale automated synthesis of human functional neuroimaging data. Nature Methods, Vol.8 (No.8). pp. 665-670. ISSN 1548-7091

Yarkone, T., Poldrack, Russell A., Nichols, Thomas E., Van Essen, David and Wager, Tor D. (2011) Large-scale automated decoding of human brain activity. In: Cognitive Neuroscience (CSN), San Francisco, CA, U.S.A., Apr 2-5, 2011 (Unpublished)

Kang, Jian, Nichols, Thomas E., Johnson, Timothy D. and Wager, Tor D.. (2011) Meta analysis of functional neuroimaging data via Bayesian spatial point processes. Journal of the American Statistical Association, Vol.106 (No.493). pp. 124-134. ISSN 0162-1459

Kang, J. (Jian), Johnson, T. D., Nichols, Thomas E., Barrett, L. F. and Wager, Tor D. (2011) A Bayesian spatial point process classification model with application to functional neuroimaging inverse inference. In: ENAR Spring Meeting, Miami, FL, U.S.A., Mar 20-23, 2011

Nichols, Thomas E. (2011) Estimating community structure in resting state data with Erdös-Renyi mixture models. In: Networks in the Human Brain Conference, Max Planck Institute for Human Cognitive & Brain Sciences, 7-8 Mar 2011

Johnson, T. D., Nichols, Thomas E. and Radue, E.-W. (Ernst-Wilhelm) (2011) Identifying spatial differences in multiple sclerosis subtypes via a marked log Gaussian Cox process. In: ENAR Spring Meeting, Miami, FL, U.S.A., 20-23 Mar 2011

Nichols, Thomas E. (2011) Towards spatial regularization to improve heritability estimates. In: Idea Lab workshop, Imperial College, London, U.K., Feb 11, 2011 (Unpublished)

Nichols, Thomas E. (2011) Statistical challenges in fMRI : optimizing fMRI designs & random field theory cluster mass inference. In: MASDOC Research Overview, University of Warwick, Coventry, UK, 8 Feb 2011 (Unpublished)

Salimi-Khorshidi, Gholamreza, Smith, Stephen M. and Nichols, Thomas E.. (2011) Adjusting the effect of nonstationarity in cluster-based and TFCE inference. NeuroImage, Vol.54 (No.3). pp. 2006-2019. ISSN 1053-8119

Dixson, L., Ridler, K., Nichols, Thomas E., Rao, A. W., Whitcher, B., Samann, P. G., Auer, Dorothee P., Holsboer, Florian, Muglia, P., Matthews, Paul M. and Inkster, Becky (2011) Associations between thyroid hormone transporter gene variants and grey matter volume changes. In: 18th Annual Meeting of the Organization for Human Brain Mapping, Quebec City, Canada, 26-30 Jun 2011

Dixson, L., Ridler, K., Nichols, Thomas E., Rao, A. W., Whitcher, B., Samann, P. G., Auer, Dorothee P., Holsboer, Florian, Muglia, Pierandrea, Matthews, Paul M. and Inkster, Becky (2011) Effects of a common variant in GSK3 on Hippocampal volume in healthy human volunteers. In: 18th Annual Meeting of the Organization for Human Brain Mapping, Quebec City, Canada, 26-30 Jun 2011

Nichols, Thomas E. (2011) Estimating community structure in resting state data with Erdös-Rényi mixture models. In: Networks in the Human Brain Conference, Max Planck Institute , 7-8 Mar 2011 (Unpublished)

Poldrack, Russell A., Mumford, Jeanette A. and Nichols, Thomas E. (2011) Handbook of functional MRI data analysis. Cambridge, U.K.: Cambridge University Press. ISBN 9780521517669

Yarkoni, Tal, Poldrack, Russell A., Nichols, Thomas E., Van Essen, David C. and Wager, Tor D.. (2011) Large-scale automated synthesis of human functional neuroimaging data. Nature Methods, 8 (8). pp. 665-670. ISSN 1548-7091

Bendfeldt, Kerstin, Hofstetter, Louis, Kuster, Pascal, Traud, Stefan, Mueller-Lenke, Nicole, Naegelin, Yvonne, Kappos, Ludwig, Gass, Achim, Nichols, Thomas E., Barkhof, Frederik, Vrenken, Hugo, Roosendaal, Stefan D., Geurts, Jeroen J.G., Radue, Ernst-Wilhelm and Borgwardt, Stefan J.. (2011) Longitudinal gray matter changes in multiple sclerosis-differential scanner and overall disease-related effects. Human Brain Mapping, Vol.33 (No.5). pp. 1225-1245. ISSN 1065-9471

Nichols, Thomas E. (2011) Mixed effects and group modelling for fMRI data. In: Idea Lab Workshop, 11 Feb 2011 (Unpublished)

Nichols, Thomas E. and Mumford, Jeanette A. (2011) Notes on fMRI power. In: Notes of fMRI Power, Cambridge University, 31 Jan 2011 (Unpublished)

Nichols, Thomas E. and Mumford, Jeanette A. (2011) Notes on fMRI power. In: MRC Cognition & Brain Unit, Cambridge University, 31 Jan 2011 (Unpublished)

Nichols, Thomas E. (2011) Point process modelling for group fMRI, neuroimaging meta analysis, & multiple sclerosis lesion data. In: Welcome Department of Cognitive Neurology Methods Seminar, University College London, London, U.K., Mar 3, 2011 (Unpublished)

Kang, J. (Jian), Johnson, T. D., Nichols, Thomas E., Wager, Tor D. and Barrett, L. F. (2011) Reverse-inference for meta-analysis : predicting study type with a fully Bayesian spatial model. In: 18th Annual Meeting of the Organization for Human Brain Mapping, Quebec City, Canada, 26-30 Jun 2011

Nichols, Thomas E. (2011) Role of permutation inference in functional MRI clinical trials. In: Role of Permutation Inference in Fucntional MRI Clinical Trials, Rahway, U.S.A., 21 Mar 2011 (Unpublished)

Nichols, Thomas E. (2011) Role of permutation inference in functional MRI clinical trials. In: Merck & Co, Biometrics Group, Rahway, USA, 21 Mar 2011 (Unpublished)

Nichols, Thomas E. and Waldrop, L. (2011) Smoothed sandwich to replace MFX in longitudinal fMRI. In: 18th Annual Meeting of the Organization for Human Brain Mapping, Quebec City, Canada, 26-30 Jun 2011

Nichols, Thomas E. (2011) Statistical challenges in fMRI : optimizing fMRI designs & random field theory cluster mass inference. In: MASDOC Research Overview Talk, University of Warwick, 8 Feb 2011 (Unpublished)

Dixson, Luanna, Ridler, Khanum, Nichols, Thomas E., Saemann, Philipp G., Auer, Dorothee P., Holsboer, Florian, Muglia, Pierandrea, Matthews, Paul M. and Inkster, Becky. (2011) Thyroid hormone transporter genes and grey matter changes in patients with major depressive disorder and healthy controls. Psychoneuroendocrinology, Vol.36 (No.6). pp. 929-934. ISSN 0306-4530

Yarkoni, Tal, Poldrack, Russell A., Nichols, Thomas E., Van Essen, David and Wager, Tor D. (2011) Towards large-scale automated synthesis of the human neuroimaging literature. In: 18th Annual Meeting of the Organization for Human Brain Mapping, Quebec City, Canada, 26-30 Jun 2011

(2011) Validation and pilot application of [18F]FDG-PET in evaluation of a metabolic therapy for Alzheimer's disease. In: Ashford, J. Wesson and Rosen, Allyson and Adamson, Maheen and Bayley, Peter and Sabri, Osama and Furst, Ansgar and Black, Sandra E. and Weiner, Michael , (eds.) Handbook of imaging the Alzheimer brain (Advances in Alzheimer's Disease, vol. 2). Amsterdam: IOS Press, pp. 627-642. ISBN 9781607507925

2010

Nichols, Thomas E. (2010) Modelling & inference of brain imaging data. In: Decision Research @ Warwick, University of Warwick, Coventry, UK, Dec 7, 2010 (Unpublished)

Verchinski, B. A., Inkster, Becky, Gambale, C., Nichols, Thomas E., Matthews, Paul M., Zoltick, B., Zhang, F., Goldman, A. L., Mattay, V. S., Weinberger, Daniel R. (Daniel Roy) and Tost, H. (2010) Effects of a common variant in GSK3 on hippocampal volume in healthy human volunteers. In: American College of Neuropsychopharmacology, 49th Annual Meeting, Miami Beach, FL, U.S.A., Dec 5-9, 2010

Nichols, Thomas E. (2010) Point process modelling of brain image data. In: Statistical Science Seminar, Department of Mathematics, Imperial College, London, U.K., Nov 19, 2010 (Unpublished)

Alzheimers Disease Neuroimaging Initiative (Including: Vounou, Maria, Nichols, Thomas E. and Montana, Giovanni). (2010) Discovering genetic associations with high-dimensional neuroimaging phenotypes: a sparse reduced-rank regression approach. NeuroImage, Vol.53 (No.3). pp. 1147-1159. ISSN 1053-8119

Inkster, Becky, Nichols, Thomas E., Saemann, Philipp G., Auer, Dorothee P., Holsboer, Florian, Muglia, Pierandrea and Matthews, Paul M.. (2010) Pathway-based approaches to imaging genetics association studies: Wnt signaling, GSK3beta substrates and major depression. NeuroImage, Vol.53 (No.3). pp. 908-917. ISSN 1053-8119

Nichols, Thomas E. (2010) To estimate or infer? Understanding and avoiding ”voodoo correlations” in imaging neuroscience. In: Experimental and Behavioural Forum, University of Warwick, Department of Economics, Oct 28, 2010 (Unpublished)

. (2010) A multi-center randomized proof-of-concept clinical trial applying [18F]FDG-PET for evaluation of metabolic therapy with rosiglitazone XR in mild to moderate Alzheimer's disease. Journal of Alzheimer's Disease, Vol.22 (No.4). pp. 1241-1256. ISSN 1875-8908

Nichols, Thomas E. (2010) Statistical contributions to clinical imaging. In: Statistical Contributions to Clinical Imaging, University Hospital, Department of Surgery, Padova, Italy, 9 Sep 2010 (Unpublished)

Smith, Stephen M., Miller, Karla L., Salimi-Khorshidi, Gholamreza, Webster, Matthew, Beckmann, Christian F., Nichols, Thomas E., Ramsey, Joseph D. and Woolrich, Mark W.. (2010) Network modelling methods for FMRI. NeuroImage, Vol.54 (No.2). pp. 875-891. ISSN 1053-8119

Kriegeskorte, Nikolaus, Lindquist, Martin A., Nichols, Thomas E., Poldrack, Russell A. and Vul, Edward (2010) Everything you never wanted to know about circular analysis, but were afraid to ask. Journal of Cerebral Blood Flow and Metabolism, Vol.30 (No.9). pp. 1551-1557. ISSN 0271-678X

Nichols, Thomas E. (2010) Threshold-free cluster enhancement (TFCE) : improving power and stability of cluster size inference in brain imaging. In: Joint Statistical Meeting, Vancouver, Canada, Jul 31 - Aug 5, 2010 (Unpublished)

Nichols, Thomas E. (2010) Permutation tests for brain imaging - the interplay with parametric random field theory. In: Statistics for Complex Problems: The Multivariate Permutation Approach and Related Topics, Padova, Italy, Jun 14, 2010 (Unpublished)

Nichols, Thomas E. (2010) To estimate or infer? Lessons from genetics. In: Why Should I Believe Your Model? How To Be a Skeptical Neuroimager, Morning Workshop, 16th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 7 Jun 2010 (Unpublished)

Nichols, Thomas E. and Waldorp, L. (2010) Accurate and computationally efficient analysis of longitudinal fMRI data. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Silver, Matt, Nichols, Thomas E. and Montana, Giovanni (2010) False positives in imaging genetics using nonstationary cluster-size inference. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Kang, J. (Jian), Johnson, Timothy D., Wager, Tor D. and Nichols, Thomas E. (2010) Improving precision and interpretability of meta analyses with a Bayesian hierarchal spatial model. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Salimi-Khorshidi, R., Nichols, Thomas E., Laird, Angela, Fox, Peter T. and Smith, Stephen M. (2010) Meta-analytic functional connectivity : finding brain regions’ multi-way interactions. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Nichols, Thomas E. (2010) Inference on SPMs : random field theory & alternatives. In: SPM Course, Functional Imaging Laboratory, University of College London, May 13, 2010 (Unpublished)

Bendfeldt, Kerstin, Egger, Hanspeter, Nichols, Thomas E., Loetscher, Patrick, Denier, Niklaus, Kuster, Pascal, Traud, Stefan, Mueller-Lenke, Nicole, Naegelin, Yvonne, Gass, Achim, Kappos, Ludwig, Radue, Ernst-Wilhelm and Borgwardt, Stefan. (2010) Effect of immunomodulatory medication on regional gray matter loss in relapsing–remitting multiple sclerosis — a longitudinal MRI study. Brain Research, Vol.1325 . pp. 174-182. ISSN 0006-8993

Nichols, Thomas E. (2010) RFT in practice : head in the continuum, feet on the lattice. In: Welcome Department of Cognitive Neurology, Methods2 Seminar, University College London, London, U.K., Apr 13, 2010 (Unpublished)

Silver, Matt, Montana, Giovanni and Nichols, Thomas E. (2010) False positives in neuroimaging genetics using cluster-size inference. In: Europena Mathematical Genetics Meeting, University of Oxford, Mar 24-25, 2010 (Unpublished)

Nichols, Thomas E. (2010) Categorical data analysis. In: Tutorial, FMRIB Centre, Oxford University, Feb 10, 2010 (Unpublished)

Nichols, Thomas E. (2010) Mixed effects and group modeling for fMRI data. In: SPM Course, Institute for Empirical Research in Economics, University of Zurich, 18 Feb 2010 (Unpublished)

Bendfeldt, Kerstin, Blumhagen, Jan Ole, Egger, Hanspeter, Loetscher, Patrick, Denier, Niklaus, Kuster, Pascal, Traud, Stefan, Mueller-Lenke, Nicole, Naegelin, Yvonne, Gass, Achim, Hirsch, Jochen, Kappos, Ludwig, Nichols, Thomas E., Radue, Ernst-Wilhelm and Borgwardt, Stefan. (2010) Spatiotemporal distribution pattern of white matter lesion volumes and their association with regional grey matter volume reductions in relapsing-remitting multiple sclerosis. Human Brain Mapping, Vol.31 (No.10). pp. 1542-1555. ISSN 1065-9471

Nichols, Thomas E. (2010) Advances in statistical methods in imaging genetics. In: Genetics, Cognition & Psychosis Program, National Institutes of Health, Jan 21, 2010 (Unpublished)

Nichols, Thomas E., Friston, K. J. (Karl J.), Roiser, Jonathan and Viding, Essi (2010) Dangers of using Falconer’s Heritability estimate with typical imaging genetic sample sizes. In: Poster Session at the 6th International Imaging Genetics Conference, Irvine, CA, U.S.A., Jan 18-19, 2010

Cole, D. M., Beckmann, C. F., Nichols, Thomas E., Searle, G. E., Tziortzi, A. C., Gunn, R. N., Matthews, Paul M., Rabiner, E. A. and Beaver, J. D. (2010) Dopamine D3 receptor availability explains orbitofrontal connectivity with cognitive networks. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Cole, D. M., Beckmann, C. F., Nichols, Thomas E., Searle, G. E., Tziortizi, A. C., Gunn, R. N., Matthews, Paul M., Rabiner, E. A. and Beaver, J. D. (2010) Dopamine D3 receptor availability explains orbitofrontal connectivity with cognitive networks. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Kang, J., Johnson, T. D., Nichols, Thomas E., Barrett, L. F. and Wager, Tor D. (2010) Meta analysis of functional neuroimaging data via Bayesian spatial point processes. In: ENAR Spring Meeting, New Orleans, 21-24 Mar 2010

Walton, R. (Rachel), Winkler, Anderson M., Blangero, John, Fox, Peter T., Glahn, David C. and Nichols, Thomas E. (2010) Reliable heritability clustering - finding distinct genetic factors that influence cortical thickness. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Walton, Richard I., Winkler, A., Blangero, J., Fox, P., Glahn, D. and Nichols, Thomas E. (2010) Reliable heritability clustering - finding distinct genetic factors that influence cortical thinking. In: 17th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, Spain, 10-14 Jun 2010

Inkster, Becky, Rao, Anil W., Ridler, Khanum, Nichols, Thomas E., Saemann, Philipp G., Auer, Dorothee P., Holsboer, Florian, Tozzi, Federica, Muglia, Pierandrea, Merlo-Pich, Emilio and Matthews, Paul M.. (2010) Structural brain changes in patients with recurrent major depressive disorder presenting with anxiety symptoms. Journal of Neuroimaging, Vol.21 (No.4). pp. 375-382. ISSN 10512284

2009

Nichols, Thomas E. (2009) A hierarchical spatial Bayesian model for functional MRI. In: Signal and Image Processing Group Seminars, Department of Computer Science, University of Warwick, Coventry, U.K., Dec 10, 2009 (Unpublished)

Xu, L., Johnson, Timothy D., Nichols, Thomas E. and Nee, Derek E.. (2009) Modeling inter-subject variability in fMRI activation location: a Bayesian hierarchical spatial model. Biometrics, Vol.65 (No.4). pp. 1041-1051. ISSN 0006-341X

Nichols, Thomas E., Xu, L. and Johnson, T. D. (2009) A hierarchical spatial Bayesian model for multisubject functional MRI data. In: Oxford-Warwick Statistics Seminar, University of Warwick, Coventry, UK, 5 Nov 2009 (Unpublished)

Nichols, Thomas E. (2009) Random field theory. In: SPM Short Course, Functional Imaging Laboratory, University College London, Oct 22, 2009 (Unpublished)

Mumford, Jeanette A. and Nichols, Thomas E.. (2009) Simple group fMRI modeling and inference. NeuroImage, Vol.47 (No.4). pp. 1469-1475. ISSN 1053-8119

Mumford, Jeanette A. and Nichols, Thomas E.. (2009) Simple group fMRI modeling and inference. NeuroImage, 47 (4). pp. 1469-1475. ISSN 1053-8119

Nichols, Thomas E. (2009) Tools for statistical inference in functional & structural brain imaging. In: International Digital Lab Seminar, Warwick Manufacturing Group, University of Warwick, Coventry, U.K., Oct 13, 2009 (Unpublished)

Woolrich, Mark W., Beckmann, C. F., Nichols, Thomas E. and Smith, Stephen M. (2009) Statistical analysis of fMRI data. In: Filippi, Massimo, (ed.) fMRI techniques and protocols. Neuromethods (Vol.41). New York ; London : Humana Press, Inc., pp. 179-236. ISBN 9781603279185

Nichols, Thomas E. (2009) Statistical opportunities in brain imaging: a case study with neuroimaging meta analysis. In: RSS Conference, Edinburgh, Scotland, Sep 7-11, 2009 (Unpublished)

Inkster, Becky, Nichols, Thomas E., Saemann, Philipp G., Auer, Dorothee P., Holsboer, Florian, Muglia, Pierandrea and Matthews, Paul M.. (2009) Association of GSK3β polymorphisms with brain structural changes in major depressive disorder. Archives of General Psychiatry, Vol.66 (No.7). pp. 721-728. ISSN 1538-3636

Nichols, Thomas E. and Poline, Jean-Baptiste. (2009) Commentary on Vul et al.'s (2009) "Puzzlingly high correlations in fMRI studies of emotion, personality, and social cognition". Perspectives on Psychological Science, Vol.4 (No.3). pp. 291-293. ISSN 1745-6916

Albin, R. L., Koeppe, Robert Allen, Wernette, K., Zhuang, W., Nichols, Thomas E., Kilbourn, M. R. and Frey, K. A.. (2009) Striatal [11C]dihydrotetrabenazine and [11C]methylphenidate binding in Tourette syndrome. Neurology, Vol.72 (No.16). pp. 1390-1396. ISSN 0028-3878

Salimi-Khorshidi, Gholamreza, Smith, Stephen M., Keltner, John R., Wager, Tor D. and Nichols, Thomas E.. (2009) Meta-analysis of neuroimaging data: a comparison of image-based and coordinate-based pooling of studies. NeuroImage, Vol.45 (No.3). pp. 810-823. ISSN 1053-8119

Bendfeldt, Kerstin, Kuster, Pascal, Traud, Stefan, Egger, Hanspeter, Winklhofer, Sebastian, Mueller-Lenke, Nicole, Naegelin, Yvonne, Gass, Achim, Kappos, Ludwig, Matthews, Paul M., Nichols, Thomas E., Radue, E.-W. (Ernst-Wilhelm) and Borgwardt, Stefan. (2009) Association of regional gray matter volume loss and progression of white matter lesions in multiple sclerosis — a longitudinal voxel-based morphometry study. NeuroImage, Vol.45 (No.1). pp. 60-67. ISSN 1053-8119

Johnson, T. D., Xu, Lei, Nichols, Thomas E. and Wager, T. (2009) Spatial point process modelling of group fMRI data analysis. In: ENAR Spring Meeting, San Antonio, TX, U.S.A., Mar 15-18, 2009. Published in: Final program of the 2009 ENAR Spring Meeting p. 56.

Zhang, Hui, Nichols, Thomas E. and Johnson, Timothy D.. (2009) Cluster mass inference via random field theory. NeuroImage, Vol.44 (No.1). pp. 51-61. ISSN 1053-8119

Smith, Stephen M. and Nichols, Thomas E.. (2009) Threshold-free cluster enhancement: addressing problems of smoothing, threshold dependence and localisation in cluster inference. NeuroImage, Vol.44 (No.1). pp. 83-98. ISSN 1053-8119

Pantazis, Dimitrios, Simpson, Gregory V., Weber, Darren L., Dale, Corby Leslie, Nichols, Thomas E. and Leahy, Richard M.. (2009) A novel ANCOVA design for analysis of MEG data with application to a visual attention study. NeuroImage, Vol.44 (No.1). pp. 164-174. ISSN 1053-8119

Salimi-Khorshidi, Gholamreza, Smith, Stephen M. and Nichols, Thomas E.. (2009) Adjusting the neuroimaging statistical inferences for nonstationarity. Medical Image Computing and Computer-Assisted Intervention – MICCAI 2009 12th International Conference, London, UK, September 20-24, 2009, Proceedings, Part I, Vol.5761 . pp. 992-999. ISSN 0302-9743

Nichols, Thomas E. (2009) Statistical perspective on fMRI data analysis: beyond mass-univariate modelling. In: MICCAI, 12th International Conference, London, U.K., Sep 24, 2009 (Unpublished)

2008

Carter, Cameron S., Heckers, Stephan, Nichols, Thomas E., Pine, Daniel S. and Strother, Stephen. (2008) Optimizing the design and analysis of clinical functional magnetic resonance imaging research studies. Biological Psychiatry, Vol.64 (No.10). pp. 842-849. ISSN 0006-3223

Filippini, Nicola, Rao, Anil, Wetten, Sally, Gibson, Rachel A., Borrie, Michael, Guzman, Danilo, Kertesz, Andrew, Loy-English, Inge, Williams, Julie, Nichols, Thomas E., Whitcher, Brandon and Matthews, Paul M.. (2008) Anatomically-distinct genetic associations of APOE ɛ4 allele load with regional cortical atrophy in Alzheimer's disease. NeuroImage, Vol.44 (No.3). pp. 724-728. ISSN 1053-8119

Purkayastha, Sumitra, Wager, Tor D. and Nichols, Thomas E.. (2008) Inferring individual differences in fMRI : finding brain regions with significant within subject correlation. Statistica Sinica, Vol.18 . pp. 1483-1500. ISSN 1017-0405

Wager, Tor D., Lindquist, Martin A., Nichols, Thomas E., Kober, Hedy and Van Snellenberg, Jared X.. (2008) Evaluating the consistency and specificity of neuroimaging data using meta-analysis. NeuroImage, Vol.45 (No.1). S210-S221. ISSN 1053-8119

Mumford, Jeanette A. and Nichols, Thomas E.. (2008) Power calculation for group fMRI studies accounting for arbitrary design and temporal autocorrelation. NeuroImage, Vol.39 (No.1). pp. 261-268. ISSN 1053-8119

2007

Poldrack, Russell A., Fletcher, Paul C., Henson, Richard N., Worsley, Keith J., Brett, M. (Matthew) and Nichols, Thomas E.. (2007) Guidelines for reporting an fMRI study. NeuroImage, Vol.40 (No.2). pp. 409-414. ISSN 1053-8119

Smith, Stephen M., Johansen-Berg, Heidi, Jenkinson, Mark, Rueckert, Daniel, Nichols, Thomas E., Miller, Karla L., Robson, Matthew D., Jones, Derek K., Klein, Johannes C., Bartsch, Andreas J. and Behrens, Timothy E. J.. (2007) Acquisition and voxelwise analysis of multi-subject diffusion data with Tract-Based Spatial Statistics. Nature Protocols, Vol.2 (No.3). pp. 499-503. ISSN 1750-2799

2006

Mumford, Jeanette A., Hernandez-Garcia, Luis, Lee, Gregory R. and Nichols, Thomas E.. (2006) Estimation efficiency and statistical power in arterial spin labeling fMRI. NeuroImage, Vol.33 (No.1). pp. 103-114. ISSN 10538119

Smith, Stephen M., Jenkinson, Mark, Johansen-Berg, Heidi, Rueckert, Daniel, Nichols, Thomas E., Mackay, Clare E., Watkins, Kate E., Ciccarelli, Olga, Cader, M. Zaheer, Matthews, Paul M. and Behrens, Timothy E. J.. (2006) Tract-based spatial statistics : voxelwise analysis of multi-subject diffusion data. NeuroImage, Vol.31 (No.4). pp. 1487-1505. ISSN 10538119

Zhang, H., Luo, Wen-Lin and Nichols, Thomas E.. (2006) Diagnosis of single-subject and group fMRI data with SPMd. Human Brain Mapping, Vol.27 (No.5). pp. 442-451. ISSN 1065-9471

Mumford, Jeanette A. and Nichols, Thomas E.. (2006) Modeling and inference of multisubject fMRI data. IEEE Engineering in Medicine and Biology Magazine, Vol.25 (No.2). pp. 42-51. ISSN 0739-5175

Friston, K. J. (Karl J.), Penny, William D., Ashburner, John, Kiebel, Stefan J. and Nichols, Thomas E. (2006) Statistical parametric mapping : the analysis of functional brain images. London: Academic Press. ISBN 9780123725608

2005

Lund, Torben E., Madsen, Kristoffer H., Sidaros, Karam, Luo, Wen-Lin and Nichols, Thomas E.. (2005) Non-white noise in fMRI : Does modelling have an impact? NeuroImage, Vol.29 (No.1). pp. 54-66. ISSN 10538119

Nichols, Thomas E., Brett, M. (Matthew), Andersson, Jesper, Wager, Tor D. and Poline, Jean-Baptiste. (2005) Valid conjunction inference with the minimum statistic. NeuroImage, Vol.25 (No.3). pp. 653-660. ISSN 10538119

Pantazis, Dimitrios, Nichols, Thomas E., Baillet, Sylvain and Leahy, Richard M.. (2005) A comparison of random field theory and permutation methods for the statistical analysis of MEG data. NeuroImage, Vol.25 (No.2). pp. 383-394. ISSN 1053-8119

2004

Hayasaka, Satoru and Nichols, Thomas E.. (2004) Combining voxel intensity and cluster extent with permutation test framework. NeuroImage, Vol.23 (No.1). pp. 54-63. ISSN 10538119

Hayasaka, Satoru, Phan, K. Luan, Liberzon, Israel, Worsley, Keith J. and Nichols, Thomas E.. (2004) Nonstationary cluster-size inference with random field and permutation methods. NeuroImage, Vol.22 (No.2). pp. 676-687. ISSN 10538119

Pantazis, Dimitrios, Leahy, Richard M., Nichols, Thomas E. and Styner, Martin Andreas (2004) Statistical surface-based morphometry using a nonparametric approach. In: Symposium on Biomedical Imaging 2004, Arlington, VA, USA, 15th-18th April 2004. Published in: Biomedical Imaging: Nano to Macro, 2004. IEEE International Symposium, Vol.2 pp. 1283-1286.

Nichols, Thomas E. and Luo, Wen-Lin. (2004) Data exploration through model diagnosis. NeuroImage, Vol.13 (No.6). p. 208. ISSN 1053 8119

Hayasaka, Satoru and Nichols, Thomas E. (2004) Combining voxel intensity and cluster extent with a permutation test framework. In: 2004 IEEE International Symposium on Biomedical Imaging : From Nano to Macro, Arlington, VA, 15-18 April 2004. Published in: Biomedical Imaging: Nano to Macro, 2004. IEEE International Symposium

2003

Hayasaka, Satoru and Nichols, Thomas E.. (2003) Validating cluster size inference : random field and permutation methods. NeuroImage, Vol.20 (No.4). pp. 2343-2356. ISSN 10538119

Luo, Wen-Lin and Nichols, Thomas E.. (2003) Diagnosis and exploration of massively univariate neuroimaging models. NeuroImage, Vol. 19 (No. 3). pp. 1014-1032. ISSN 10538119

Wager, Tor D. and Nichols, Thomas E.. (2003) Optimization of experimental design in fMRI : a general framework using a genetic algorithm. NeuroImage, Vol.18 (No.2). pp. 293-309. ISSN 10538119

Phan, K. Luan, Taylor, Stephan F., Welsh, Robert C., Decker, Laura R., Noll, Douglas C., Nichols, Thomas E., Britton, Jennifer C. and Liberzon, Israel. (2003) Activation of the medial prefrontal cortex and extended amygdala by individual ratings of emotional arousal : a fMRI study. Biological Psychiatry, Vol.53 (No.3). pp. 211-215. ISSN 00063223

Nichols, Thomas E. and Hayasaka, Satoru. (2003) Controlling the familywise error rate in functional neuroimaging : a comparative review. Statistical Methods in Medical Research, Vol.12 (No.5). pp. 419-446. ISSN 09622802

Jonides, John, Ching-Yune C., Sylvester, Lacey, Steven C., Wager, Tor D., Nichols, Thomas E. and Awh, Edward (2003) Modules of working memory. In: Kluwe, Rainer and Lüer, Gerd, 1938- and Rösler, Frank, (eds.) Principles of Learning and Memory. New York: Springer, pp. 113-134. ISBN 978-3-7643-6699-5

Pantazis, Dimitrios, Nichols, Thomas E., Baillet, Sylvain and Leahy, Richard M.. (2003) Spatiotemporal localization of significant activation in MEG using permutation tests. Lecture Notes in Computer Science, Vol.2732 . pp. 512-523. ISSN 0302-9743

2002

Sylvester, Ching-Yune C., Wager, Tor D., Lacey, Steven C., Hernandez, Luis, Nichols, Thomas E., Smith, Edward E. and Jonides, John. (2002) Switching attention and resolving interference: fMRI measures of executive functions. Neuropsychologia, Vol. 41 (No. 3). pp. 357-370. ISSN 00283932

Genovese, Christopher R., Lazar, Nicole A. and Nichols, Thomas E.. (2002) Thresholding of statistical maps in functional neuroimaging using the false discovery rate. NeuroImage, Vol.15 (No.4). pp. 870-878. ISSN 10538119

Derbyshire, Stuart W. G., Nichols, Thomas E., Firestone, Leonard L., Townsend, David W., Ph.D. and Jones, Anthony K. P.. (2002) Gender differences in patterns of cerebral activation during equal experience of painful laser stimulation. The Journal of Pain, Vol.3 (No.5). pp. 401-411. ISSN 15265900

Nichols, Thomas E. and Holmes, Andrew P.. (2002) Nonparametric permutation tests for functional neuroimaging : a primer with examples. Human Brain Mapping, 15 (1). pp. 1-25. ISSN 1065-9471

Ossadtchi, Alex, Brown, Vanessa M., Khan, Arshad H., Cherry, Simon R., Nichols, Thomas E., Leahy, Richard M. and Smith, Desmond James. (2002) Statistical analysis of multiplex brain gene expression images. Neurochemical Research, Vol.27 (No.10). pp. 1113-1121. ISSN 03643190

1999

Nofzinger, Eric A., Nichols, Thomas E. , Meltzer, Carolyn C. , Price, Julie, Steppe, Doris A. , Miewald, Jean M. , Kupfer, David J. and Moore , Robert Y.. (1999) Changes in forebrain function from waking to REM sleep in depression: preliminary analyses [of 18F]FDG PET studies. Psychiatry Research: Neuroimaging, Vol. 91 (No. 2). pp. 59-78. ISSN 1872-7506

Nichols, Thomas E., Qi, Jinyi and Leahy, Richard M. (1999) Continuous time dynamic PET imaging using list mode data. In: IPMI '99 : 16th International Conference on Information Processing in Medical Imaging, Visegrad, Hungary, June 28 - July 2, 1999. Published in: IPMI '99 Proceedings of the 16th International Conference on Information Processing in Medical Imaging pp. 98-111.

Petersson, K. M., Nichols, Thomas E., Poline, Jean-Baptiste and Holmes, Andrew P.. (1999) Statistical limitations in functional neuroimaging II. Signal detection and statistical inference. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol.354 (No.1387). pp. 1261-1281. ISSN 0962-8436

Petersson, K. M. and Nichols, Thomas E.. (1999) Statistical limitations in functional neuroimaging. I. Non-inferential methods and statistical models. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol.354 (No.1387). pp. 1239-1260. ISSN 0962-8436

1998

Smith, Gwenn S., Price, Julie C., Lopresti, Brian J., Huang, Yiyun, Simpson, N. (Norman), Holt, D. (Daniel), Mason, N. Scott, Meltzer, Carolyn Cidis, Sweet, Robert A., Nichols, Thomas E., Sashin, Donald and Mathis, Chester A.. (1998) Test-retest variability of serotonin 5-HT2A receptor binding measured with positron emission tomography and [18F]altanserin in the human brain. Synapse, Vol.30 (No.4). pp. 380-392. ISSN 0887-4476

Holmes, Andrew P., Watson, John D. G. and Nichols, Thomas E. (1998) Holmes and Watson on 'Sherlock'. Journal of Cerebral Blood Flow & Metabolism, Vol.18 (No.6). p. 697. ISSN 0271-678X

1997

Ganguli, Rohan, Carter, Cameron S., Mintun, Mark A., Brar, Jaspreet, Becker, James T., Sarma, Raj, Nichols, Thomas E. and Bennington, Elizabeth. (1997) PET brain mapping study of auditory verbal supraspan memory versus visual fixation in schizophrenia. Biological Psychiatry, Vol. 41 (No. 1). pp. 33-42. ISSN 00063223

Carter, Cameron S., Mintun, Mark A., Nichols, Thomas E. and Cohen, Jonathan D.. (1997) Anterior cingulate gyrus dysfunction and selective attention deficits in schizophrenia: [15O]H2O PET study during single-trial stroop task performance. The American Journal of Psychiatry, Vol.154 . pp. 1670-1675. ISSN 1535-7228

1996

Herbster, A. N., Nichols, Thomas E., Wiseman, Marybeth, Mintun, Mark A., DeKosky, Steven T. and Becker, James T.. (1996) Functional connectivity in auditory–verbal short-term memory in Alzheimer's disease. NeuroImage, Vol.4 (No.2). pp. 67-77. ISSN 1053 8119

Nichols, Thomas E., Palmer, A. and Becker, James T. (1996) Meta-analysis of auditory verbal short-term memory using positron emission tomography. In: 48th Annual Meeting of the American Academy of Neurology, San Francisco, USA, March 23-30, 1996. Published in: American Academy of Neurology 48th Annual meeting program, Vol.46 (No.2).

Carter, Cameron S., Mintun, Mark A., Cohen, Jonathan D., Nichols, Thomas E. and Wiseman, Marybeth. (1996) Anterior cingulate gyrus dysfunction and attentional pathology in schizophrenia [Abstract]. NeuroImage, Vol.3 (No.3). S477. ISSN 1053 8119

Becker, James T., Mintun, Mark A., Aleva, K., Wiseman, Marybeth, Nichols, Thomas E. and DeKosky, Steven T.. (1996) Compensatory reallocation of brain resources supporting verbal episodic memory in Alzheimer's disease. Neurology, Vol.46 . pp. 692-700. ISSN 1526-632X

Mann, J. John (Joseph John), Malone, Kevin M., Diehl, David J., Perel, James, Nichols, Thomas E. and Mintun, Mark A.. (1996) Positron emission tomographic imaging of serotonin activation effects on prefrontal cortex in healthy volunteers. Journal of Cerebral Blood Flow & Metabolism, Vol.16 . pp. 418-426. ISSN 0271-678X

1995

Clark, Stuart, Dickinson, Mark R. , King, Terence A., Jones, A. (Anthony), Chen, Andrew, Derbyshire, Stuart, Townsend, David W., Ph.D., Kinahan, Paul E. , Mintun, Mark A. and Nichols, Thomas E. (1995) Laser stimulation for pain research. In: Biomedical Optoelectronics in Clinical Chemistry and Biotechnology, Barcelona, Spain, 12 September 1995. Published in: Proceedings of SPIE - International Society for Optical Engineering, Vol.197 pp. 197-205.

Baumann, Stephen B., Noll, Douglas C., Kondziolka, D., Schneider, W., Nichols, Thomas E., Mintun, Mark A., Lewine, Jeffery D., Yonas, Howard, Orrison, William W. and Sclabassi, Robert. (1995) Comparison of functional magnetic resonance imaging with positron emission tomography and magnetoencephalography to identify the motor cortex in a patient with an arteriovenous malformation. Computer Aided Surgery, Vol.1 (No.4). pp. 191-197. ISSN 1092-9088

1994

Diehl, David J., Keshavan, Matcheri S., Kanal, Emanuel, Nebes, R. D., Nichols, Thomas E. and Gillen, Joseph S.. (1994) Post-ECT increases in MRI regional T2 relaxation times and their relationship to cognitive side effects : a pilot study. Psychiatry Research, Vol.54 (No.2). pp. 177-184. ISSN 01651781