2014

Casale, Francesco Paolo, Giurato, Giorgio, Nassa, Giovanni, Armond, Jonathan W., Oates, Chris J., Corá, Davide, Gamba, Andrea, Mukherjee, Sach, Weisz, Alessandro and Nicodemi, Mario (2014) Single-cell states in the estrogen response of breast cancer cell lines. PLoS ONE , 9 (2). Article number e88485. doi:10.1371/journal.pone.0088485 ISSN 1932-6203.

Armond, Jonathan W., Saha, Krishanu, Rana, Anas A., Oates, Chris J., Jaenisch, Rudolf, Nicodemi, Mario and Mukherjee, Sach (2014) A stochastic model dissects cell states in biological transition processes. Scientific Reports, Volume 4 . Article number 3692. doi:10.1038/srep03692 ISSN 2045-2322.

2012

Bureau, Romain, Brand, Samuel, Ball, Robin and Nicodemi, Mario (2012) Flow regimes of a fluid driven granular suspension. Granular Matter, Vol.14 (No.2). pp. 175-178. doi:10.1007/s10035-011-0295-y ISSN 1434-5021.

2011

Brand, Samuel, Ball, Robin and Nicodemi, Mario (2011) Stochastic transitions and jamming in granular pipe flow. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol.83 (No.3). Article 031309. doi:10.1103/PhysRevE.83.031309 ISSN 1539-3755.

2010

Brand, Samuel, Ciamarra, M. Pica and Nicodemi, Mario (2010) Complex flow in granular media. Advances in Complex Systems, Vol.13 (No.3 Sp. Iss. SI). pp. 339-347. doi:10.1142/S021952591000261X ISSN 0219-5259.

Scialdone, Antonio and Nicodemi, Mario (2010) Statistical mechanics models for X-chromosome inactivation. Advances in Complex Systems, Vol.13 (No.3). pp. 367-376. doi:10.1142/S0219525910002566 ISSN 0219-5259.

Amato, R. (Roberto), Pinelli, Michele, D’Andrea, Daniel, Miele, Gennaro, Nicodemi, Mario, Raiconi, Giancarlo and Cocozza, Sergio (2010) A novel approach to simulate gene-environment interactions in complex diseases. BMC Bioinformatics, Vol.11 (Article 8). doi:10.1186/1471-2105-11-8 ISSN 1471-2105.

Ciamarra, Massimo Pica, Nicodemi, Mario and Coniglio, Antonio (2010) Recent results on the jamming phase diagram. Soft Matter, Vol.6 (No.13). pp. 2871-2874. doi:10.1039/b926810c ISSN 1744-683X.

2009

Nicodemi, Mario, Ciamarra, M. P. and Coniglio, A. (2009) Rheology of sheared monodisperse granular suspensions. European Physical Hournal: Special Topics, Vol.179 . pp. 157-163. doi:10.1140/epjst/e2010-01200-9 ISSN 1951-6355.

Ciamarra, Massimo Pica, De Candia, Antonio, Fierro, Annalisa, Nicodemi, Mario and Coniglio, Antonio (2009) Statistical mechanics of static granular packings under gravity. In: Workshop on Modelling Geophysical Systems by Statistical Mechanics Methods, Erice, Italy, April 27-MAY 02, 2008. Published in: International Journal of Modern Physics B, Vol.23 (No.28-29). pp. 5345-5358. doi:10.1142/S0217979209063675 ISSN 0217-9792.

Nicodemi, Mario, de Candia, Antonio and Coniglio, Antonio (2009) Aggregation of fibrils and plaques in amyloid molecular systems. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol.80 (No.4 Part 1). Article no. 041914. doi:10.1103/PhysRevE.80.041914 ISSN 1539-3755.

Veglio, A., Gamba, A., Nicodemi, Mario, Bussolino, F. and Serini, G. (2009) Symmetry breaking mechanism for epithelial cell polarization. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol.80 (No.3 Part 1). Article no. 031919. doi:10.1103/PhysRevE.80.031919 ISSN 1539-3755.

Scialdone, Antonio and Nicodemi, Mario (2009) DNA loci cross-talk through thermodynamics. Journal of Biomedicine and Biotechnology, 20 . 516723. doi:10.1155/2009/516723

Nicodemi, Mario and Prisco, Antonella (2009) Thermodynamic pathways to genome spatial organization in the cell nucleus. Biophysical Journal, Vol.96 (No.6). pp. 2168-2177. doi:10.1016/j.bpj.2008.12.3919 ISSN 0006-3495.

2008

Scialdone, Antonio and Nicodemi, Mario (2008) Mechanics and dynamics of X-chromosome pairing at X inactivation. PL o S Computational Biology, Vol.4 (No.12). doi:10.1371/journal.pcbi.1000244 ISSN 1553-734X.

de Arcangelis, L., Lippiello, E., Godano, C. and Nicodemi, Mario (2008) Statistical properties and universality in earthquake and solar flare occurrence. European Physical Journal B. Condensed Matter and Complex Systems, Volume 64 (Numbers 3-4). pp. 551-555. doi:10.1140/epjb/e2008-00057-5 ISSN 1434-6028.

Nicodemi, Mario, Panning, Barbara and Prisco, Antonella (2008) The colocalization transition of homologous chromosomes at meiosis. Physical Review E, Vol.77 (No.6 Part 1). doi:10.1103/PhysRevE.77.061913 ISSN 1539-3755.

Nicodemi, Mario, Panning, Barbara and Prisco, Antonella (2008) A thermodynamic switch for chromosome colocalization. Genetics, Vol.179 (No.1). pp. 717-721. doi:10.1534/genetics.107.083154 ISSN 0016-6731.

Grebenkov, Denis S., Ciamarra, Massimo Pica, Nicodemi, Mario and Coniglio, Antonio (2008) Flow, ordering, and jamming of sheared granular suspensions. Physical Review Letters, Volume 100 (Number 7). Article No. 078001. doi:10.1103/PhysRevLett.100.078001 ISSN 0031-9007.

2007

Ciamarra, M. Pica, Coniglio, A., de Martino, D. and Nicodemi, Mario (2007) Shear- and vibration-induced order-disorder transitions in granular media. European Physical Journal E. Soft Matter, Vol.24 (No.4). pp. 411-415. doi:10.1140/epje/i2007-10256-6 ISSN 1292-8941.

Nicodemi, Mario and Prisco, Antonella (2007) Self-assembly and DNA binding of the blocking factor in X chromosome inactivation. PLoS Computational Biology, Vol.3 (No.11). pp. 2135-2142. doi:10.1371/journal.pcbi.0030210 ISSN 1553-734X.

Ciamarra, Massimo Pica, Nicodemi, Mario and Coniglio, Antonio (2007) Granular packs under vertical tapping: structure evolution, grain motion, and dynamical heterogeneities. Physical Review E, Vol.75 (No.2). Article: 021303. doi:10.1103/PhysRevE.75.021303 ISSN 1539-3755.

2003

Warren, P., Weitz, D. A. , Nicodemi, Mario, Coffey, William, Felderhof, B. U. and Ball, Robin (2003) Dynamics of weakly aggregated colloidal particles - discussion. Royal Society of London. Philosophical Transactions A. Mathematical, Physical and Engineering Sciences, Vol.361 (No.1805). pp. 764-766. doi:10.1098/rsta.2002.1163