2014

Casale, Francesco Paolo, Giurato, Giorgio, Nassa, Giovanni, Armond, Jonathan W., Oates, Chris J., Corá, Davide, Gamba, Andrea, Mukherjee, Sach, Weisz, Alessandro and Nicodemi, Mario (2014) Single-cell states in the estrogen response of breast cancer cell lines. PLoS ONE , 9 (2). Article number e88485. doi:10.1371/journal.pone.0088485

Armond, Jonathan W., Saha, Krishanu, Rana, Anas A., Oates, Chris J., Jaenisch, Rudolf, Nicodemi, Mario and Mukherjee, Sach (2014) A stochastic model dissects cell states in biological transition processes. Scientific Reports, Volume 4 . Article number 3692. doi:10.1038/srep03692

2012

Bureau, Romain, Brand, Samuel, Ball, Robin and Nicodemi, Mario (2012) Flow regimes of a fluid driven granular suspension. Granular Matter, Vol.14 (No.2). pp. 175-178. doi:10.1007/s10035-011-0295-y

2011

Brand, Samuel, Ball, Robin and Nicodemi, Mario (2011) Stochastic transitions and jamming in granular pipe flow. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol.83 (No.3). Article 031309. doi:10.1103/PhysRevE.83.031309

2010

Brand, Samuel, Ciamarra, M. Pica and Nicodemi, Mario (2010) Complex flow in granular media. Advances in Complex Systems, Vol.13 (No.3 Sp. Iss. SI). pp. 339-347. doi:10.1142/S021952591000261X

Scialdone, Antonio and Nicodemi, Mario (2010) Statistical mechanics models for X-chromosome inactivation. Advances in Complex Systems, Vol.13 (No.3). pp. 367-376. doi:10.1142/S0219525910002566

Amato, R. (Roberto), Pinelli, Michele, D’Andrea, Daniel, Miele, Gennaro, Nicodemi, Mario, Raiconi, Giancarlo and Cocozza, Sergio (2010) A novel approach to simulate gene-environment interactions in complex diseases. BMC Bioinformatics, Vol.11 (Article 8). doi:10.1186/1471-2105-11-8

Ciamarra, Massimo Pica, Nicodemi, Mario and Coniglio, Antonio (2010) Recent results on the jamming phase diagram. Soft Matter, Vol.6 (No.13). pp. 2871-2874. doi:10.1039/b926810c

2009

Nicodemi, Mario, Ciamarra, M. P. and Coniglio, A. (2009) Rheology of sheared monodisperse granular suspensions. European Physical Hournal: Special Topics, Vol.179 . pp. 157-163. doi:10.1140/epjst/e2010-01200-9

Ciamarra, Massimo Pica, De Candia, Antonio, Fierro, Annalisa, Nicodemi, Mario and Coniglio, Antonio (2009) Statistical mechanics of static granular packings under gravity. In: Workshop on Modelling Geophysical Systems by Statistical Mechanics Methods, Erice, Italy, April 27-MAY 02, 2008. Published in: International Journal of Modern Physics B, Vol.23 (No.28-29). pp. 5345-5358. ISSN 0217-9792. doi:10.1142/S0217979209063675

Nicodemi, Mario, de Candia, Antonio and Coniglio, Antonio (2009) Aggregation of fibrils and plaques in amyloid molecular systems. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol.80 (No.4 Part 1). Article no. 041914. doi:10.1103/PhysRevE.80.041914

Veglio, A., Gamba, A., Nicodemi, Mario, Bussolino, F. and Serini, G. (2009) Symmetry breaking mechanism for epithelial cell polarization. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol.80 (No.3 Part 1). Article no. 031919. doi:10.1103/PhysRevE.80.031919

Scialdone, Antonio and Nicodemi, Mario (2009) DNA loci cross-talk through thermodynamics. Journal of Biomedicine and Biotechnology, 20 . 516723. doi:10.1155/2009/516723

Nicodemi, Mario and Prisco, Antonella (2009) Thermodynamic pathways to genome spatial organization in the cell nucleus. Biophysical Journal, Vol.96 (No.6). pp. 2168-2177. doi:10.1016/j.bpj.2008.12.3919

2008

Scialdone, Antonio and Nicodemi, Mario (2008) Mechanics and dynamics of X-chromosome pairing at X inactivation. PL o S Computational Biology, Vol.4 (No.12). doi:10.1371/journal.pcbi.1000244

de Arcangelis, L., Lippiello, E., Godano, C. and Nicodemi, Mario (2008) Statistical properties and universality in earthquake and solar flare occurrence. European Physical Journal B. Condensed Matter and Complex Systems, Volume 64 (Numbers 3-4). pp. 551-555. doi:10.1140/epjb/e2008-00057-5

Nicodemi, Mario, Panning, Barbara and Prisco, Antonella (2008) The colocalization transition of homologous chromosomes at meiosis. Physical Review E, Vol.77 (No.6 Part 1). doi:10.1103/PhysRevE.77.061913

Nicodemi, Mario, Panning, Barbara and Prisco, Antonella (2008) A thermodynamic switch for chromosome colocalization. Genetics, Vol.179 (No.1). pp. 717-721. doi:10.1534/genetics.107.083154

Grebenkov, Denis S., Ciamarra, Massimo Pica, Nicodemi, Mario and Coniglio, Antonio (2008) Flow, ordering, and jamming of sheared granular suspensions. Physical Review Letters, Volume 100 (Number 7). Article No. 078001. doi:10.1103/PhysRevLett.100.078001

2007

Ciamarra, M. Pica, Coniglio, A., de Martino, D. and Nicodemi, Mario (2007) Shear- and vibration-induced order-disorder transitions in granular media. European Physical Journal E. Soft Matter, Vol.24 (No.4). pp. 411-415. doi:10.1140/epje/i2007-10256-6

Nicodemi, Mario and Prisco, Antonella (2007) Self-assembly and DNA binding of the blocking factor in X chromosome inactivation. PLoS Computational Biology, Vol.3 (No.11). pp. 2135-2142. doi:10.1371/journal.pcbi.0030210

Ciamarra, Massimo Pica, Nicodemi, Mario and Coniglio, Antonio (2007) Granular packs under vertical tapping: structure evolution, grain motion, and dynamical heterogeneities. Physical Review E, Vol.75 (No.2). Article: 021303. doi:10.1103/PhysRevE.75.021303

2003

Warren, P., Weitz, D. A. , Nicodemi, Mario, Coffey, William, Felderhof, B. U. and Ball, Robin (2003) Dynamics of weakly aggregated colloidal particles - discussion. Royal Society of London. Philosophical Transactions A. Mathematical, Physical and Engineering Sciences, Vol.361 (No.1805). pp. 764-766. doi:10.1098/rsta.2002.1163