Journal Article

Aston, John A. D. and Kirch, Claudia (2012) Estimation of the distribution of change-points with appliction to fMRI data. Annals of Applied Statistics, Vol.6 (No.4). pp. 1906-1948. doi:10.1214/12-AOAS565SUPP

Aston, John A. D., Peng, Jyh-Ying and Martin, D. E. K. (2012) Implied distributions in multiple change point problems. Statistics and Computing, Vol.22 (No.4). pp. 981-993. doi:10.1007/s11222-011-9268-6

Chan, Andrew H., Jenkins, Paul and Song, Yun S. (2012) Genome-wide fine-scale recombination rate variation in Drosophila melanogaster. PLoS Genetics, Vol.8 (No.12). e1003090. doi:10.1371/journal.pgen.1003090

Croydon, David A. (2012) Scaling limit for the random walk on the largest connected component of the critical random graph. Research Institute for Mathematical Sciences. Publications, Vol.48 (No.2). pp. 279-338. doi:10.2977/PRIMS/70

Croydon, David A., Hambly, Ben M. and Kumagai, Takashi (2012) Convergence of mixing times for sequences of random walks on finite graphs. Electronic Journal of Probability, Vol.17 . article no.3. doi:10.1214/EJP.v17-1705

Firth, David and Turner, Heather L. (2012) Bradley-Terry models in R : the BradleyTerry2 package. Journal of Statistical Software, Volume 48 (Number 9).

Ge, Tian, Feng, Jianfeng, Hibar, Derrek P., Thompson, Paul M. and Nichols, Thomas E. (2012) Increasing power for voxel-wise genome-wide association studies : the random field theory, least square kernel machines and fast permutation procedures. NeuroImage, Vol.63 (No.2). pp. 858-873. doi:10.1016/j.neuroimage.2012.07.012

Grun, Bettina, Kosmidis, Ioannis and Zeileis, Achim (2012) Extended beta regression in R : shaken, stirred, mixed, and partitioned. Journal of Statistical Software, 48 (11). pp. 1-25.

Hatsuda, H. (2012) Finding differentially expressed regions of arbitrary length in quantitative genomic data based on marked point process model. Bioinformatics, Vol.28 (No.18). i633-i639. doi:10.1093/bioinformatics/bts371

Hill, Bryony J., Kendall, W. S. and Thönnes, Elke (2012) Fibre-generated point processes and fields of orientations. Annals of Applied Statistics, Vol.6 (No.3). pp. 994-1020. doi:10.1214/12-AOAS553

Hill, Steven M. (Mark), Neve, Richard M., Bayani, Nora, Kuo, Wen-Lin, Ziyad, Safiyyah, Spellman, Paul T., Gray, Joe W. and Mukherjee, Sach (2012) Integrating biological knowledge into variable selection : an empirical Bayes approach with an application in cancer biology. BMC Bioinformatics, Volume 13 (Number 1). Article no. 94. doi:10.1186/1471-2105-13-94

Hobson, David and Klimmek, Martin (2012) Model-independent hedging strategies for variance swaps. Finance and Stochastics, Vol.16 (No.4). pp. 611-649. doi:10.1007/s00780-012-0190-3

Hobson, David (David G.) and Neuberger, Anthony (2012) Robust bounds for forward start options. Mathematical Finance, Vol.22 (No.1). pp. 31-56. doi:10.1111/j.1467-9965.2010.00473.x

Jacka, Saul D. (2012) A simple proof of Kramkov's result on uniform supermartingale decompositions. Stochastics, Vol.84 (No.5-6). pp. 599-602. doi:10.1080/17442508.2011.570343

Jenkins, Paul, Song, Yun S. and Brem, Rachel B. (2012) Genealogy-based methods for inference of historical recombination and gene flow and their application in Saccharomyces cerevisiae. PLoS One, Volume 7 (Number 11). Article number e46947. doi:10.1371/journal.pone.0046947

Jiwaji, Meesbah, Daly, Rónán, Gibriel, Abdullah, Barkess, Gráinne, McLean, Pauline, Yang, Jingli, Pansare, Kshama, Cumming, Sarah, McLauchlan, Alisha, Kamola, Piotr J., Bhutta, Musab S., West, Adam G., West, Katherine L., Kolch, Walter, Girolami, Mark and Pitt, A. R. (2012) Unique reporter-based sensor platforms to monitor signalling in cells. PLoS One, Volume 7 (Number 11). Article number e50521. doi:10.1371/journal.pone.0050521

(2012) Deep sequence analysis of on-small cell lung cancer : integrated analysis of gene expression, alternative splicing, and single nucleotide variations in lung adenocarcinomas with and without oncogenic KRAS mutations. Frontiers in Oncology, Volume 2 . Article number 12. doi:10.3389/fonc.2012.00012

Kolokoltsov, V. N. (Vasiliĭ Nikitich) (2012) Nonlinear Markov games on a finite state space (mean-field and binary interactions). International Journal of Statistics and Probability, Volume 1 (Number 1). doi:10.5539/ijsp.v1n1p77

Lamnisos, Demetris, Griffin, Jim E. and Steel, Mark F. J. (2012) Cross-validation prior choice in Bayesian probit regression with many covariates. Statistics and Computing, Vol.22 (No.2). pp. 359-373. doi:10.1007/s11222-011-9228-1

Ley, Eduardo and Steel, Mark F. J. (2012) Mixtures of g-priors for Bayesian model averaging with economic applications. Journal of Econometrics, Volume 171 (Number 2). pp. 251-266. doi:10.1016/j.jeconom.2012.06.009

Lloret-Llinares, Marta, Pérez-Lluch, Sílvia, Rossell, David, Morán, Tomás, Ponsa-Cobas, Joan, Auer, Herbert, Corominas, Montserrat and Azorín, Fernando (2012) dKDM5/LID regulates H3K4me3 dynamics at the transcription-start site (TSS) of actively transcribed developmental genes. Nucleic Acids Research, Volume 40 (Number 19). pp. 9493-9505. doi:10.1093/nar/gks773

Nam, Christopher F. H., Aston, John A. D. and Johansen, Adam M. (2012) Quantifying the uncertainty in change points. Journal of Time Series Analysis, Volume 33 (Number 5). pp. 807-823. doi:10.1111/j.1467-9892.2011.00777.x

Oates, Chris J. and Mukherjee, Sach (2012) Network inference and biological dynamics. Annals of Applied Statistics, Vol.6 (No.3). pp. 1209-1235. doi:10.1214/11-AOAS532

Pillai, Natesh S., Stuart, A. M. and Thiéry, Alexandre H. (2012) Optimal scaling and diffusion limits for the Langevin algorithm in high dimensions. The Annals of Applied Probability, Vol.22 (No.6). pp. 2320-2356. doi:10.1214/11-AAP828

Sidebotham, Peter, Atkins, Ben and Hutton, Jane (2012) Changes in rates of violent child deaths in England and Wales between 1974 and 2008 : an analysis of national mortality data. Archives of Disease in Childhood, Vol.97 (No.3). pp. 193-199. doi:10.1136/adc.2010.207647

Vavoulis, Dimitrios V., Straub, Volko A., Aston, John A. D. and Feng, Jianfeng (2012) A self-organizing state-space-model approach for parameter estimation in Hodgkin-Huxley-type models of single neurons. PLoS Computational Biology, Vol.8 (No.3). e1002401. doi:10.1371/journal.pcbi.1002401

(2012) Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. The Plant Cell, Vol.24 (No.9). pp. 3530-3557. doi:10.1105/tpc.112.102046

Conference Item

Johansen, Adam M., Whiteley, Nick and Doucet, Arnaud (2012) Exact approximation of Rao-Blackwellised particle filters. In: 16th IFAC Symposium on System Identification, SYSID 2012, Brussels, Belgium, 11-13 July 2012. Published in: System Identification, Vol.16 (No.1). pp. 488-493. ISSN 0040-6376. doi:10.1136/thoraxjnl-2012-202678.081

Journal Item

Yuan, Ke, Girolami, Mark and Niranjan, Mahesan (2012) Markov chain Monte Carlo methods for state-space models with point process observations. Neural Computation, Volume 24 (Number 6). pp. 1462-1486. doi:10.1162/NECO_a_00281