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Amin, Munia, Kothamachu, Varun B., Feliu, Elisenda, Scharf, Birgit E., Porter, Steven L. and Soyer, Orkun S.. (2014) Phosphate sink containing two-component signaling systems as tunable threshold devices. PLoS Computational Biology, Volume 10 (Number 10). Article number e1003890. ISSN 1553-7358
Feng, Song, Ollivier, Julien F., Swain, Peter S. and Soyer, Orkun S.. (2015) BioJazz : In silico evolution of cellular networks with unbounded complexity using rule-based modeling. Nucleic Acids Research . pp. 1-15. ISSN 0305-1048 (In Press)