Journal Article

Abdelsamea, Mohammed M., Gnecco, Giorgio and Medhat Gaber, Mohamed (2017) A SOM-based Chan–Vese model for unsupervised image segmentation. Soft Computing, 21 (8). pp. 2047-2067. doi:10.1007/s00500-015-1906-z

Adaikalakoteswari, Antonysunil, Vatish, Manu, Alam, Mohammad T., Ott, Sascha, Kumar, Sudhesh and Saravanan, P. (2017) Low vitamin B12 in pregnancy is associated with adipose-derived circulating miRs targeting PPARγ and insulin resistance. The Journal of Clinical Endocrinology & Metabolism, 102 (11). pp. 4200-4209. doi:10.1210/jc.2017-01155

Alam, Mohammad T., Olin-Sandoval, Viridiana, Stincone, Anna, Keller, Markus A., Zelezniak, Aleksej, Luisi, Ben and Ralser, Markus (2017) The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization. Nature Communications, 8 . 16018. doi:10.1038/ncomms16018

Alsubaie, Najah, Trahearn, Nicholas, Raza, Shan-e-Ahmed, Snead, David and Rajpoot, Nasir M. (2017) Stain deconvolution using statistical analysis of multi-resolution stain colour representation. PLoS One, 12 (1). e0169875. doi:10.1371/journal.pone.0169875

Auckland, Philip, Clarke, Nicholas I., Royle, Stephen J. and McAinsh, Andrew D. (2017) Congressing kinetochores progressively load Ska complexes to prevent force-dependent detachment. The Journal of Cell Biology, 216 (6). pp. 1623-1639. doi:10.1083/jcb.201607096

Bonfanti, Mirko, Balabani, Stavroula, Greenwood, John P., Puppala, Sapna, Homer-Vanniasinkam, Shervanthi and Díaz-Zuccarini, Vanessa (2017) Computational tools for clinical support : a multi-scale compliant model for haemodynamic simulations in an aortic dissection based on multi-modal imaging data. Journal of The Royal Society Interface, 14 (136). 20170632. doi:10.1098/rsif.2017.0632

Bowman, Andrew J., Koide, Akiko, Goodman, Jay S., Colling, Meaghan E., Zinne, Daria, Koide, Shohei and Ladurner, Andreas G. (2017) sNASP and ASF1A function through both competitive and compatible modes of histone binding. Nucleic Acids Research, 45 (2). pp. 643-656. doi:10.1093/nar/gkw892

Chiou, Jian-geng, Balasubramanian, Mohan K. and Lew, Daniel J. (2017) Cell polarity in yeast. Annual Review of Cell and Developmental Biology, 33 (1). pp. 77-101. doi:10.1146/annurev-cellbio-100616-060856

Dean, Samuel, Sunter, Jack D. and Wheeler, Richard J. (2017) TrypTag.org : a Trypanosome genome-wide protein localisation resource. Trends in Parasitology, 33 (2). pp. 80-82. doi:10.1016/j.pt.2016.10.009

Dimitriadis, Georgios K., Randeva, Harpal S. and Miras, A. (2017) Microvascular complications after metabolic surgery. Lancet Diabetes and Endocrinology, 5 (4). pp. 240-241. doi:doi: 10.1016/S2213-8587(17)30042-6.

Dolan, Alan, Lomas, Tim, Ghobara, Tarek and Hartshorne, Geraldine M. (2017) ‘It's like taking a bit of masculinity away from you’ : towards a theoretical understanding of men's experiences of infertility. Sociology of Health & Illness, 39 (6). pp. 878-892. doi:10.1111/1467-9566.12548

Fonseca, V. G., Sinniger, F., Gaspar, J. M., Quince, C., Creer, S., Power, Deborah M., Peck, Lloyd S. and Clark, Melody S. (2017) Revealing higher than expected meiofaunal diversity in Antarctic sediments : a metabarcoding approach. Scientific Reports, 7 (1). doi:10.1038/s41598-017-06687-x

Greaves, Erin, Horne, Andrew W., Jerina, Helen, Mikolajczak, Marta, Hilferty, Lisa, Mitchell, Rory, Fleetwood-Walker, Sue M. and Saunders, Philippa T. K. (2017) EP2 receptor antagonism reduces peripheral and central hyperalgesia in a preclinical mouse model of endometriosis. Scientific Reports, 7 (1). 44169 . doi:10.1038/srep44169

Guy, Collette S., Tichauer, Esther, Kay, Gemma L., Phillips, Daniel J., Bailey, Trisha L., Harrison, James, Furze, Christopher M., Millard, Andrew D., Gibson, Matthew I., Pallen, Mark J. and Fullam, Elizabeth (2017) Identification of the anti-mycobacterial functional properties of piperidinol derivatives. British Journal of Pharmacology, 174 (14). pp. 2183-2193. doi:10.1111/bph.13744

Hasdemir, Burcu, Mahajan, Shilpi, Oses-Prieto, Juan, Chand, Shreya, Woolley, Michael J., Burlingame, Alma, Grammatopoulos, Dimitris K. and Bhargava, Aditi (2017) Actin cytoskeleton-dependent regulation of corticotropin-releasing factor receptor heteromers. Molecular Biology of the Cell, 28 (18). pp. 2386-2399. doi:10.1091/mbc.e16-11-0778

Hu, Jiamiao, Lin, Shaoling, Zheng, Baodong and Cheung, Peter C. K. (2017) Short-chain fatty acids in control of energy metabolism. Critical Reviews in Food Science and Nutrition, 58 (8). pp. 1243-1249. doi:10.1080/10408398.2016.1245650

Huang, Anqi, Amourda, Christopher, Zhang, Shaobo, Tolwinski, Nicholas S. and Saunders, Timothy E. (2017) Decoding temporal interpretation of the morphogen Bicoid in the early Drosophila embryo. eLife, 6 . e26258. doi:10.7554/eLife.26258

Ijaz, Umer Zeeshan, Quince, Christopher, Hanske, Laura, Loman, Nick, Calus, Szymon T., Bertz, Martin, Edwards, Christine A., Gaya, Daniel R., Hansen, Richard, McGrogan, Paraic, Russell, Richard K. and Gerasimidis, Konstantinos (2017) The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred. PLoS One, 12 (2). e0172605. doi:10.1371/journal.pone.0172605

James, John R. (2017) Using the force to find the peptides you’re looking for. Proceedings of the National Academy of Sciences of the United States of America, 114 (39). pp. 10303-10305. doi:10.1073/pnas.1713970114

Kaur, Prameet, Saunders, Timothy E. and Tolwinski, Nicholas S. (2017) Coupling optogenetics and light-sheet microscopy, a method to study Wnt signaling during embryogenesis. Scientific Reports, 7 (1). 16636. doi:10.1038/s41598-017-16879-0

Keasley, James, Blickwedel, Jessica and Quenby, Siobhan (2017) Adverse effects of exposure to armed conflict on pregnancy : a systematic review. BMJ Global Health, 2 (4). e000377. doi:10.1136/bmjgh-2017-000377

(2017) Membrane-proximal epitope facilitates efficient T cell synapse formation by anti-FcRH5/CD3 and is a requirement for myeloma cell killing. Cancer Cell, 31 (3). pp. 383-395. doi:10.1016/j.ccell.2017.02.001

Li, Xuan, Thome, Sarah, Ma, Xiaodan, Amrute-Nayak, Mamta, Finigan, Alison, Kitt, Lauren, Masters, Leanne, James, John R., Shi, Yuguang, Meng, Guoyu and Mallat, Ziad (2017) MARK4 regulates NLRP3 positioning and inflammasome activation through a microtubule-dependent mechanism. Nature Communications, 8 . 15986. doi:10.1038/ncomms15986

Liaunardy-Jopeace, Ardiyanto, Murton, Ben L, Mahesh, Mohan, Chin, Jason W and James, John R. (2017) Encoding optical control in LCK kinase to quantitatively investigate its activity in live cells. Nature Structural & Molecular Biology, 24 (12). pp. 1155-1163. doi:10.1038/nsmb.3492

Lutton, E. Josiah, Lammers, Wim J. E. P., James, Sean G., Berg, Hugo van den and Blanks, Andrew M. (2017) A computational method for three-dimensional reconstruction of the microarchitecture of myometrial smooth muscle from histological sections. PLoS One, 12 (3). e0173404. doi:10.1371/journal.pone.0173404

Lévi, Francis A., Karaboué, Abdoulaye, Saffroy, Raphaël, Desterke, Christophe, Boige, Valerie, Smith, Denis, Hebbar, Mohamed, Innominato, Pasquale, Taieb, Julien, Carvalho, Carlos, Guimbaud, Rosine, Focan, Christian, Bouchahda, Mohamed, Adam, René, Ducreux, Michel, Milano, Gérard and Lemoine, Antoinette (2017) Pharmacogenetic determinants of outcomes on triplet hepatic artery infusion and intravenous cetuximab for liver metastases from colorectal cancer (European trial OPTILIV, NCT00852228). British Journal of Cancer, 117 (7). pp. 965-973. doi:10.1038/bjc.2017.278

Maciejowski, John, Drechsler, Hauke, Grundner-Culemann, Kathrin, Ballister, Edward R., Rodriguez-Rodriguez, Jose-Antonio, Rodriguez-Bravo, Veronica, Jones, Mathew J. K., Foley, Emily, Lampson, Michael A., Daub, Henrik, McAinsh, Andrew D. and Jallepalli, Prasad V. (2017) Mps1 regulates kinetochore-microtubule attachment stability via the ska complex to ensure error-free chromosome segregation. Developmental Cell, 41 (2). 143-156.e6. doi:10.1016/j.devcel.2017.03.025

Maguire, John J., Tyurina, Yulia Y., Mohammadyani, Dariush, Kapralov, Aleksandr A., Anthonymuthu, Tamil S., Qu, Feng, Amoscato, Andrew A., Sparvero, Louis J., Tyurin, Vladimir A., Planas-Iglesias, Joan, He, Rong-Rong, Klein-Seetharaman, Judith, Bayır, Hülya and Kagan, Valerian E. (2017) Known unknowns of cardiolipin signaling : the best is yet to come. Biochimica and Biophysica Acta. Molecular and Cell Biology of Lipids, 1862 (1). pp. 8-24. doi:10.1016/j.bbalip.2016.08.001

Martinez de la Escalera Clapp, Lucia, Kyrou, Ioannis, Vrbikova, Jana, Hainer, Voitech, Sramkova, Petra, Fried, Martin, Piya, Milan K., Kumar, Sudhesh, Tripathi, Gyanendra and McTernan, P. G. (2017) Impact of gut hormone FGF-19 on type-2 diabetes and mitochondrial recovery in a prospective study of obese diabetic women undergoing bariatric surgery. BMC Medicine, 15 (1). 34. doi:10.1186/s12916-017-0797-5

McGovern, Andrew, Feher, Michael D., Munro, Neil and de Lusignan, Simon (2017) Sodium-glucose co-transporter 2 (SGLT2) inhibitor : comparing trial data and real-world use. Diabetes therapy, 8 (2). pp. 365-376. doi:10.1007/s13300-017-0254-7

McGovern, Andrew, Feher, Michael D., Munro, Neil and de Lusignan, Simon (2017) Sodium-glucose co-transporter-2 (SGLT2) inhibitors : comparing trial and real world use (study protocol). Diabetes therapy, 8 (2). pp. 355-363. doi:10.1007/s13300-017-0229-8

Meadows, John C. and Millar, Jonathan B. A. (2017) Some assembly required : redefining the mitotic checkpoint. Molecular & Cellular Oncology, 4 (6). e1314238. doi:10.1080/23723556.2017.1314238

Michniewski, Slawomir, Redgwell, Tamsin, Scanlan, David J. and Millard, Andrew D. (2017) Draft genome sequence of Bacteriophage vB_Eco_swan01. Genome Announcements, 5 (28). pp. 1-17. e00501. doi:10.1128/genomeA.00501-17

Nixon, Faye M., Honnor, Thomas R., Clarke, Nicholas I., Starling, Georgina, Beckett, Alison J., Johansen, Adam M., Brettschneider, Julia, Prior, Ian A. and Royle, Stephen J. (2017) Microtubule organization within mitotic spindles revealed by serial block face scanning electron microscopy and image analysis. Journal of Cell Science, 130 (10). pp. 1845-1855. doi:10.1242/jcs.203877

Ozaki, Rie, Kuroda, Keiji, Ikemoto, Yuko, Ochiai, Asako, Matsumoto, Akemi, Kumakiri, Jun, Kitade, Mari, Itakura, Atsuo, Muter, Joanne, Brosens, Jan J. and Takeda, Satoru (2017) Reprogramming of the retinoic acid pathway in decidualizing human endometrial stromal cells. PLoS One, 12 (3). e0173035. doi:10.1371/journal.pone.0173035

Palani, S., Chew, Ting Gang, Ramanujam, Srinivasan, Kamnev, Anton, Harne, Shrikant, Chapa y Lazo, Bernardo, Hogg, Rebecca, Sevugan, Mayalagu, Mishra, Mithilesh, Gayathri, Pananghat and Balasubramanian, Mohan K. (2017) Motor activity dependent and independent functions for Myosin II in cytokinesis contribute to actomyosin ring assembly and contraction in Schizosaccharomyces pombe. Current Biology, 27 (5). pp. 751-757. doi:10.1016/j.cub.2017.01.028

Palesh, Oxana, Haitz, Karyn, Lévi, Francis A., Bjarnason, Georg A., Deguzman, Carl, Alizeh, Igbal, Ulusakarya, Ayhan, Packer, Mary Melissa and Innominato, Pasquale F. (2017) Relationship between subjective and actigraphy-measured sleep in 237 patients with metastatic colorectal cancer. Quality of Life Research, 26 (10). pp. 2783-2791. doi:10.1007/s11136-017-1617-2

Quince, Christopher, Walker, Alan W., Simpson, Jared T., Loman, Nicholas J. and Segata, Nicola (2017) Shotgun metagenomics, from sampling to analysis. Nature Biotechnology, 35 (9). pp. 833-844. doi:10.1038/nbt.3935

Quince, Christopher , Delmont, Tom O., Raguideau, Sébastien, Alneberg, Johannes, Darling, Aaron E., Collins, Gavin and Eren, A. Murat (2017) DESMAN : a new tool for de novo extraction of strains from metagenomes. Genome Biology, 18 (1). doi:10.1186/s13059-017-1309-9

Rhys, Alexander D., Monteiro, Pedro, Smith, Christopher Matthew, Vaghela, Malti, Arnandis, Teresa, Kato, Takuya, Leitinger, Birgit, Sahai, Erik, McAinsh, Andrew D., Charras, Guillaume and Godinho, Susana A. (2017) Loss of E-cadherin provides tolerance to centrosome amplification in epithelial cancer cells. The Journal of Cell Biology, 217 (1). pp. 195-209. doi:10.1083/jcb.201704102

Rupprecht, Jean-Francois, Ong, Kok Haur, Yin, Jianmin, Huang, Anqi, Dinh, Huy-Hong-Quan, Singh, Anand P., Zhang, Shaobo, Yu, Weimiao, Saunders, Timothy E. and Yap, Alpha (2017) Geometric constraints alter cell arrangements within curved epithelial tissues. Molecular Biology of the Cell, 28 (25). pp. 3582-3594. doi:10.1091/mbc.E17-01-0060

Saffroy, Raphael, Morère, Jean-François, Bosselut, Nelly, Innominato, Pasquale F., Hamelin, Jocelyne, Trédaniel, Jean, Masse, Sophie, Dussaule-Duchatelle, Véronique, Balaton, André, Validire, Pierre, Guettier, Catherine, Bouchahda, Mohamed and Lemoine, Antoinette (2017) Impact of country of birth on genetic testing of metastatic lung adenocarcinomas in France : African women exhibit a mutational spectrum more similar to Asians than to Caucasians. Oncotarget, 8 . pp. 50792-50803. doi:doi:10.18632/oncotarget.15132

Sandu, Pamela, Crepin, Valerie F., Drechsler, Hauke, McAinsh, Andrew D., Frankel, Gad and Berger, Cedric N. (2017) The Enterohemorrhagic Escherichia coli effector EspW triggers actin remodeling in a Rac1-dependent manner. Infection and Immunity, 85 (9). e00244-17. doi:10.1128/IAI.00244-17

Sarkar, Sourav, Ryan, Ellis L. and Royle, Stephen J. (2017) FGFR3–TACC3 cancer gene fusions cause mitotic defects by removal of endogenous TACC3 from the mitotic spindle. Open Biology, 7 (8). 170080. doi:10.1098/rsob.170080

(2017) Critical assessment of metagenome interpretation - a benchmark of metagenomics software. Nature Methods, 14 (11). pp. 1063-1071. doi:10.1038/nmeth.4458

Singh, Anand P., Galland, Rémi, Finch-Edmondson, Megan L., Grenci, Gianluca, Sibarita, Jean-Baptiste, Studer, Vincent, Viasnoff, Virgile and Saunders, Timothy E. (2017) 3D protein dynamics in the cell nucleus. Biophysical Journal, 112 (1). pp. 133-142. doi:10.1016/j.bpj.2016.11.3196

Smutny, Michael, Ákos, Zsuzsa, Grigolon, Silvia, Shamipour, Shayan, Ruprecht, Verena, Čapek, Daniel, Behrndt, Martin, Papusheva, Ekaterina, Tada, Masazumi, Hof, Björn, Vicsek, Tamás, Salbreux, Guillaume and Heisenberg, Carl-Philipp (2017) Friction forces position the neural anlage. Nature Cell Biology, 19 (4). pp. 306-317. doi:10.1038/ncb3492

Sposini, Silvia, Jean-Alphonse, Frederic G., Ayoub, Mohammed A., Oqua, Affiong, West, Camilla, Lavery, Stuart, Brosens, Jan J., Reiter, Eric and Hanyaloglu, Aylin C. (2017) Integration of GPCR signaling and sorting from very early endosomes via opposing APPL1 mechanisms. Cell Reports, 21 (10). pp. 2855-2867. doi:10.1016/j.celrep.2017.11.023

Stefanini, Irene, Albanese, Davide, Sordo, Maddalena, Legras, Jean-Luc, De Filippo, Carlotta, Cavalieri, Duccio and Donati, Claudio (2017) SaccharomycesIDentifier, SID : strain-level analysis of Saccharomyces cerevisiae populations by using microsatellite meta-patterns. Scientific Reports, 7 (1). 15343. doi:10.1038/s41598-017-15729-3

Sun, Zijun, Amourda, Christopher, Shagirov, Murat, Hara, Yusuke, Saunders, Timothy E. and Toyama, Yusuke (2017) Basolateral protrusion and apical contraction cooperatively drive Drosophila germ-band extension. Nature Cell Biology, 19 (4). pp. 375-383. doi:10.1038/ncb3497

(2017) Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis. Scientific Reports, 7 (1). doi:10.1038/s41598-017-11866-x

Tarabra, Elena, An Lee, Ting-Wen, Zammit, Victor A., Vatish, Manu, Yamada, Eijiro, Pessin, Jeffrey E. and Bastie, Claire C. (2017) Differential activation of Fyn kinase distinguishes saturated and unsaturated fats in mouse macrophages. Oncotarget . doi:doi:10.18632/oncotarget.21258

Tochigi, Hideno, Kajihara, Takeshi, Mizuno, Yosuke, Mizuno, Yumi, Tamaru, Shunsuke, Kamei, Yoshimasa, Okazaki, Yasushi, Brosens, Jan J. and Ishihara, Osamu (2017) Loss of miR-542-3p enhances IGFBP-1 expression in decidualizing human endometrial stromal cells. Scientific Reports, 7 . 40001. doi:10.1038/srep40001

NESCOP (Including: Watson, Samuel I., Arulampalam, Wiji and Petrou, Stavros). (2017) The effect of health care expenditure on patient outcomes : evidence from English neonatal care. Health Economics, 26 (12). e274-e284. doi:10.1002/hec.3503

Yamada, Eijiro, Okada, Shuichi, Nakajima, Yasuyo, Bastie, Claire C., Tagaya, Yuko, Osaki, Aya, Shimoda, Yoka, Shibusawa, Ryo, Saito, Tsugumichi, Ozawa, Atsushi and Yamada, Masanobu (2017) Effect of carbohydrate counting using bolus calculators on glycemic control in type 1 diabetes patients during continuous subcutaneous insulin infusion. Journal of Diabetes Investigation, 8 (4). pp. 496-500. doi:10.1111/jdi.12604

Zambon, Paola, Palani, S., Kamnev, Anton and Balasubramanian, Mohan K. (2017) Myo2p is the major motor involved in actomyosin ring contraction in fission yeast. Current Biology, 27 (3). R99-R100. doi:10.1016/j.cub.2016.12.024

von Loeffelholz, Ottilie, Venables, Neil A., Drummond, Douglas R., Katsuki, Miho, Cross, R. A. and Moores, Carolyn A. (2017) Nucleotide– and Mal3-dependent changes in fission yeast microtubules suggest a structural plasticity view of dynamics. Nature Communications, 8 (1). 2110. doi:10.1038/s41467-017-02241-5

Book Item

Barber, T. M., Joharatnam, J. and Franks, S. (2017) Pathogenesis and management of adiposity and insulin resistance in PCOS. In: Freemark, M., (ed.) Pediatric obesity : etiology, pathogenesis, and treatment. Contemporary Endocrinology . Springer. (Unpublished)

Kaltsas, Gregory, Dimitriadis, Georgios K., Androulakis, Ioannis I. and Grossman, Ashley (2017) Paraneoplastic syndromes related to neuroendorine tumours. In: De Groot, Leslie J., (ed.) Endotext [Internet]. South Dartmouth (MA: MDText.com, Inc.

Mishima, Masanori (2017) Preparation of centralspindlin as an active heterotetramer of kinesin and GTPase activating protein subunits for in vitro structural and functional assays. In: Echard, Arnaud , (ed.) Cytokinesis. Elsevier , pp. 371-385. ISBN 9780128096734

Conference Item

Castelino, M., Tutino, M., Moat, J., Ijaz, U. Z., Parslew, R., Al-Sharqi, A., Warren, R. B., Quince, Christopher, Ho, P., Upton, M., Eyre, S. and Barton, A. (2017) AB0115C Comparison of the bacterial stool microbiota in established psoriatic arthritis (PSA) and psoriasis (PSC) - exploratory analysis of pilot data. In: Annual European Congress of Rheumatology, 14–17 June 2017. Published in: Annals of the Rheumatic Diseases, 76 (Suppl 2). p. 1087. ISSN 0003-4967.

Svolos, V., Hansen, R., Ijaz, U. Z., Quince, Christopher, Watson, D., Alghamdi, A., Brejnrod, A., Ansalone, C., Klopfleisch, R., Milling, S., Gaya, D. R., Russell, R. K. and Gerasimidis, K. (2017) AODTH-007 Dietary manipulation of the healthy human and colitic rat gut microbiome by cd-treat diet and exclusive enteral nutrition; a proof of concept study. In: British Society of Gastroenterology, Annual General Meeting, 19–22 June 2017. Published in: Gut, 66 (Suppl 2). A202. ISBN 0017-5749.

Svolos, V., Hansen, R., Ijaz, U. Z., Quince, Christopher, Watson, D., Alghamdi, A., Brejnrod, A., Ansalone, C., Milling, S., Gaya, D., Russell, R. and Gerasimidis, K. (2017) DOP008 Dietary manipulation of the healthy human and colitic murine gut microbiome by CD-TREAT diet and exclusive enteral nutrition; a proof of concept study. In: 12th Congress of ECCO, Barcelona, Spain, 15-18 Feb 2017. Published in: Journal of Crohn's and Colitis, 11 (Suppl_1). S29-S30. ISSN 1873-9946. doi:10.1093/ecco-jcc/jjx002.045

Working or Discussion Paper

Ijaz, Ali Z., Jeffries, Thomas, Quince, Christopher, Hamonts, Kelly and Singh, Brajesh (2017) TaxaSE : exploiting evolutionary conservation within 16S rDNA sequences for enhanced taxonomic annotation. Working Paper. PeerJ Preprints.

(2017) Critical assessment of metagenome interpretation − a benchmark of computational metagenomics software. Working Paper. bioRxiv: Cold Spring Harbour Laboratory. (Unpublished)

Journal Item

Arduini, Arduino and Zammit, Victor A. (2017) Acetate transport into mitochondria does not require a carnitine shuttle mechanism. Magnetic Resonance in Medicine, 77 (1). doi:10.1002/mrm.26492