Journal Article

Adams, Sally and Carré, Isabelle A. (2011) Downstream of the plant circadian clock : output pathways for the control of physiology and development. Essays in Biochemistry, Vol.49 . pp. 53-69. doi:10.1042/BSE0490053

Alderwick, Luke J., Lloyd, Georgina S., Lloyd, Adrian, Lovering, Andrew L., Eggeling, L. and Besra, Gurdyal S. (2011) Biochemical characterization of the Mycobacterium tuberculosis phosphoribosyl-1-pyrophosphate synthetase. Glycobiology, Vol.21 (No.4). pp. 410-425. doi:10.1093/glycob/cwq173

Aletrari, Mina-Olga , McKibbin, Craig, Williams, Helen, Pawar, Vidya, Pietroni, Paola, Lord, Mike, Flitsch, Sabine L., Whitehead, Roger C., Swanton, Eileithyia, High, Stephen and Spooner, Robert A. (2011) Eeyarestatin 1 interferes with both retrograde and anterograde intracellular trafficking pathways. PLoS One, Vol.6 (No.7). e22713. doi:10.1371/journal.pone.0022713

Alexandersson, Erik, Becker, John V. W., Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J. and Vivier, Melané A. (2011) Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. BMC Research Notes, Vol.4 (No.1). p. 493. doi:10.1186/1756-0500-4-493

Alfano, G., Lustrato, G., Belli, C., Zanardini, E., Cappitelli, F., Mello, E., Sorlini, C. and Ranalli, G. (2011) The bioremoval of nitrate and sulfate alterations on artistic stonework: The case-study of Matera Cathedral after six years from the treatment. International Biodeterioration & Biodegradation , Vol.65 (No.7). pp. 1004-1011. doi:10.1016/j.ibiod.2011.07.010

Ansel, L., Bentsen, A. H., Ancel, C., Bolborea, Matei, Klosen, P., Mikkelsen, J. D. and Simonneaux, V. (2011) Peripheral kisspeptin reverses short photoperiod-induced gonadal regression in Syrian hamsters by promoting GNRH release. Reproduction, 142 (3). pp. 417-425. doi:10.1530/REP-10-0313

Anukool, Usanee, O’Neill, Colette E., Butr-Indr, Bordin, Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2011) Meticillin-resistant Staphylococcus aureus in pigs from Thailand. International Journal of Antimicrobial Agents, Volume 38 (Number 1). pp. 86-87. doi:10.1016/j.ijantimicag.2011.02.018

Appleby, Vanessa J., Corrêa, Sônia A. L., Duckworth, Joshua K., Nash, Joanne E., Noël, Jacques, Fitzjohn, Stephen M., Collingridge, Graham L. and Molnár, Elek (2011) LTP in hippocampal neurons is associated with a CaMKII-mediated increase in GluA1 surface expression. Journal of Neurochemistry, Vol.116 (No.4). pp. 530-543. doi:10.1111/j.1471-4159.2010.07133.x

Asally, Munehiro, Yasuda, Yoshinari, Oka, Masahiro, Otsuka, Shotaro, Yoshimura, Shige H., Takeyasu, Kunio and Yoneda, Yoshihiro (2011) Nup358, a nucleoporin, functions as a key determinant of the nuclear pore complex structure remodeling during skeletal myogenesis. FEBS Journal, 278 (4). pp. 610-621. doi:10.1111/j.1742-4658.2010.07982.x

Ateweberhan, Mebrahtu, McClanahan, T. R., Graham, N. A. J. and Sheppard, Charles (Charles R. C.) (2011) Episodic heterogeneous decline and recovery of coral cover in the Indian Ocean. Coral Reefs, Vol.30 (No.3). pp. 739-752. doi:10.1007/s00338-011-0775-x

Atterbury, Alison and Wall, Mark J. (2011) A population of immature cerebellar parallel fibre synapses are insensitive to adenosine but are inhibited by hypoxia. Neuropharmacology, Vol.61 (No.4). pp. 880-888. doi:10.1016/j.neuropharm.2011.06.006

Avrahami, S., Jia, Z., Neufeld, J. D., Murrell, J. C. (J. Colin), Conrad, R. and Kusel, K. (2011) Active Autotrophic Ammonia-Oxidizing Bacteria in Biofilm Enrichments from Simulated Creek Ecosystems at Two Ammonium Concentrations Respond to Temperature Manipulation. Applied and Environmental Microbiology, Vol.77 (No.20). pp. 7329-7338. doi:10.1128/AEM.05864-11

Bailey, Kate, Cevik, Volkan, Holton, Nicholas, Byrne-Richardson, Jane, Sohn, Kee-Hoon, Coates, Mary, Woods-Tör, Alison, Aksoy, H. Murat, Hughes, L., Baxter, Laura, Jones, Jonathan D. G., Beynon, Jim, Holub, E. B. and Tör, Mahmut (2011) Molecular cloning of ATR5Emoy2 from hyaloperonospora arabidopsidis, an avirulence determinant that triggers RPP5-mediated defense in Arabidopsis. Molecular Plant-Microbe Interactions, Vol.24 (No.7). pp. 827-838. doi:10.1094/MPMI-12-10-0278

Baines, A. E., Corrêa, Sônia A. L., Irving, A. J. and Frenguelli, Bruno G. (2011) Differential trafficking of adenosine receptors in hippocampal neurons monitored using GFP- and super-ecliptic pHluorin-tagged receptors. Neuropharmacology, Vol.61 (No.1-2). pp. 1-11. doi:10.1016/j.neuropharm.2011.02.005

Baranski, R., Allender, Charlotte J., Kaminska, I. and Rzeminska, M. J. (2011) Biodiversity of carrot genetic resources - variation in secondary metabolites. Planta Medica, Vol.77 (No.12). p. 1379.

Barnett, J. P., Lawrence, Janna, Mendel, Sharon and Robinson, Colin (2011) Expression of the bifunctional Bacillus subtilis TatAd protein in Escherichia coli reveals distinct TatA/B-family and TatB-specific domains. Archives of Microbiology, Vol.193 (No.8). pp. 583-594. doi:10.1007/s00203-011-0699-4

Barnett, James P., Robinson, Colin, Scanlan, David J. and Blindauer, Claudia A. (2011) The Tat protein export pathway and its role in cyanobacterial metalloprotein biosynthesis. FEMS Microbiology Letters, Vol.325 (No.1). pp. 1-9. doi:10.1111/j.1574-6968.2011.02391.x

Bartlett, Bryan J., Isakson, Pauline, Lewerenz, Jan, Sanchez, Heriberto, Kotzebue, Roxanne W., Cumming, Robert C., Harris, Greg L., Nezis, I. P., Schubert, David R., Simonsen, Anne and Finley, Kim D. (2011) Ref(2)P and ubiquitinated proteins are conserved markers of neuronal aging, aggregate formation and progressive autophagic defects. Autophagy, Vol. 7 (No. 6). pp. 572-583. doi:10.4161/auto.7.6.14943

Bassel, George, Glaab, Enrico, Marquez, Julietta, Holdsworth, Michael J. and Bacardit, Jaume (2011) Functional network construction in Arabidopsis using rule-based machine learning on large-scale data sets. The Plant Cell, 23 (9). pp. 3101-3116. doi:10.1105/tpc.111.088153

Bassel, George, Lan, H., Glaab, E., Gibbs, D. J., Gerjets, T., Krasnogor, N., Bonner, A. J., Holdsworth, M. J. and Provart, N. J. (2011) Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions. Proceedings of the National Academy of Sciences of the United States of America, 108 (23). pp. 9709-9714. doi:10.1073/pnas.1100958108

Battaglia-Brunet, F., El Achbouni, H., Quemeneur, M., Hallberg, K. B., Kelly, Donovan P. and Joulian, C. (2011) Proposal that the arsenite-oxidizing organisms Thiomonas cuprina and 'Thiomonas arsenivorans' be reclassified as strains of Thiomonas delicata, and emended description of Thiomonas delicata. International Journal of Systematic and Evolutionary Microbiology, Vol.61 (No.12). pp. 2816-2821. doi:10.1099/ijs.0.023408-0

Bennett, Amanda J., Bending, G. D., Chandler, Dave, Hilton, Sally and Mills, P. R. (2011) Meeting the demand for crop production : the challenge of yield decline in crops grown in short rotations. Biological Reviews, Vol.87 (No.1). pp. 52-71. doi:10.1111/j.1469-185X.2011.00184.x

Blatherwick, Eleanor Q., Van Berkel, Gary J., Pickup, Kathryn, Johansson, Maria K., Beaudoin, Marie-Eve, Cole, Roderic O., Day, Jennifer M., Iverson, Suzanne, Wilson, Ian D., Scrivens, James H. and Weston, Daniel J. (2011) Utility of spatially-resolved atmospheric pressure surface sampling and ionization techniques as alternatives to mass spectrometric imaging (MSI) in drug metabolism. Xenobiotica, Vol.41 (No.8). pp. 720-734. doi:10.3109/00498254.2011.587550

Bode, Michael, Probert, William J. M., Turner, Will R., Wilson, Kerrie A. and Venter, Oscar (2011) Conservation planning with multiple organizations and objectives. Conservation Biology, 25 (2). pp. 295-304. doi:10.1111/j.1523-1739.2010.01610.x

(2011) Complete genome sequence of the aerobic marine methanotroph methylomonas methanica MC09. Journal of Bacteriology, Volume 193 (Number 24). pp. 7001-7002. doi:10.1128/JB.06267-11

Boden, Rich, Borodina, E., Wood, A. P., Kelly, Donovan P., Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2011) Purification and characterization of dimethylsulfide monooxygenase from hyphomicrobium sulfonivorans. Journal of Bacteriology, Vol.193 (No.5). pp. 1250-1258. doi:10.1128/JB.00977-10

Boden, Rich, Cleland, David, Green, Peter N., Katayama, Yoko, Uchino, Yoshihito, Murrell, J. C. (J. Colin) and Kelly, Donovan P. (2011) Phylogenetic assessment of culture collection strains of Thiobacillus thioparus, and definitive 16S rRNA gene sequences for T. thioparus, T. denitrificans, and Halothiobacillus neapolitanus. Archives of Microbiology, Vol.194 (No.3). pp. 187-195. doi:10.1007/s00203-011-0747-0

Boden, Rich, Ferriera, S., Johnson, J., Kelly, Donovan P., Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2011) Draft genome sequence of the chemolithoheterotrophic, halophilic methylotroph methylophaga thiooxydans DMS010. Journal of Bacteriology, Vol.193 (No.12). pp. 3154-3155. doi:10.1128/JB.00388-11

Boden, Rich and Murrell, J. C. (J. Colin) (2011) Response to mercury (II) ions in Methylococcus capsulatus (Bath). FEMS Microbiology Letters, Vol.324 (No.2). pp. 106-110. doi:10.1111/j.1574-6968.2011.02395.x

Boden, Rich, Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2011) Dimethylsulfide is an energy source for the heterotrophic marine bacterium Sagittula stellata. FEMS Microbiology Letters, Vol.322 (No.2). pp. 188-193. doi:10.1111/j.1574-6968.2011.02349.x

Bolborea, Matei, Laran-Chich, Marie-Pierre, Rasri, Kamontip, Hildebrandt, Herbert, Govitrapong, Piyarat, Simonneaux, V., Pévet, Paul, Steinlechner, Stephan and Klosen, Paul (2011) Melatonin controls photoperiodic changes in tanycyte vimentin and neural cell adhesion molecule expression in the Djungarian hamster (Phodopus sungorus). Endocrinology, 152 (10). pp. 3871-3883. 1039. doi:10.1210/en.2011-1039

Boltze, Johannes, Nitzsche, Björn, Geiger, Kathrin D. and Schoon, Heinz-Adolf (2011) Histopathological investigation of different MCAO modalities and impact of autologous bone marrow mononuclear cell administration in an ovine stroke model. Translational Stroke Research, 2 (3). pp. 279-293. doi:10.1007/s12975-011-0101-5

Bouman, Heather A., Ulloa, Osvaldo, Barlow, Ray, Li, William K. W., Platt, Trevor, Zwirglmaier, Katrin, Scanlan, David J. and Sathyendranath, Shubha (2011) Water-column stratification governs the community structure of subtropical marine picophytoplankton. Environmental Microbiology Reports, 3 (4). pp. 473-482. doi:10.1111/j.1758-2229.2011.00241.x

Bozkurt, T. O., Schornack, S., Win, J., Shindo, T., Ilyas, M., Oliva, R., Cano, L. M., Jones, Alexandra M., Huitema, E., van der Hoorn, R. A. L. and Kamoun, S. (2011) Phytophthora infestans effector AVRblb2 prevents secretion of a plant immune protease at the haustorial interface. Proceedings of the National Academy of Sciences of the United States of America, Volume 108 (Number 51). pp. 20832-20837. doi:10.1073/pnas.1112708109

Branston, Steven D., Matos, Cristina F. R. O., Freedman, R. B., Robinson, Colin and Keshavarz-Moore, Eli (2011) Investigation of the impact of Tat export pathway enhancement on E. coli culture, protein production and early stage recovery. Biotechnology and Bioengineering, Vol.109 (No.4). pp. 983-991. doi:10.1002/bit.24384

(2011) High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell, The, Vol.23 (No.3). pp. 873-894. doi:10.1105/tpc.111.083345

Bryan, Samantha J., Burroughs, Nigel John, Evered, Carol, Sacharz, Joanna, Nenninger, Anja, Mullineaux, Conrad W. and Spence, Edward M. (2011) Loss of the SPHF homologue Slr1768 leads to a catastrophic failure in the maintenance of thylakoid membranes in synechocystis sp. PCC 6803. PLoS One, Vol.6 (No.5). e19625. doi:10.1371/journal.pone.0019625

Bugg, Tim, Braddick, Darren, Dowson, Christopher G. and Roper, David I. (2011) Bacterial cell wall assembly : still an attractive antibacterial target. Trends in Biotechnology, Vol.29 (No.4). pp. 167-173. doi:10.1016/j.tibtech.2010.12.006

Burns, Ian G., Zhang, Kefeng, Turner, Mary K., Lynn, James R. , McClement, Sandy, Hand, Paul and Pink, David (2011) Genotype and environment effects on nitrate accumulation in a diversity set of lettuce accessions at commercial maturity : the influence of nitrate uptake and assimilation, osmotic interactions and shoot weight and development. Journal of the Science of Food and Agriculture, Vol.91 (No.12). pp. 2217-2233. doi:10.1002/jsfa.4442

Burns, Ian G., Zhang, Kefeng, Turner, Mary K., Meacham, Mark C., Al-Redhiman, Khalid, Lynn, James R. , Broadley, Martin R., Hand, Paul and Pink, David (2011) Screening for genotype and environment effects on nitrate accumulation in 24 species of young lettuce. Journal of the Science of Food and Agriculture, Vol.91 (No.3). pp. 553-562. doi:10.1002/jsfa.4220

Byrne-Bailey, K. G., Gaze, William H., Zhang, Lihong, Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2011) Integron prevalence and diversity in manured soil. Applied and Environmental Microbiology, Vol.77 (No.2). pp. 684-687. doi:10.1128/AEM.01425-10

Böhmdorfer, Gudrun, Schleiffer, Alexander, Brunmeir, Reinhard, Ferscha, Stefan, Nizhynska, Viktoria, Kozák, Jaroslav, Angelis, Karel J., Kreil, David and Schweizer, Dieter (2011) GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis. Plant Journal, Vol.67 (No.3). pp. 420-433. doi:10.1111/j.1365-313X.2011.04604.x

Caillaud, Marie-Cécile, Piquerez, Sophie J. M., Fabro, Georgina, Steinbrenner, Jens, Ishaque, Naveed, Beynon, Jim and Jones, Jonathan D. G. (2011) Subcellular localization of the Hpa RxLR effector repertoire identifies a tonoplast-associated protein HaRxL17 that confers enhanced plant susceptibility. Plant Journal, Vol.69 (No.2). pp. 252-265. doi:10.1111/j.1365-313X.2011.04787.x

Cain, Peter, Holdermann, Iris, Sinning, Irmgard, Johnson, Arthur E. and Robinson, Colin (2011) Binding of chloroplast signal recognition particle to a thylakoid membrane protein substrate in aqueous solution and delineation of the cpSRP43–substrate interaction domain. Biochemical Journal, Vol.437 (No.1). pp. 149-155. doi:10.1042/BJ20110270

Calvo-Bado, Leo A., Oakley, Brian B., Dowd, Scot E., Green, Laura E., Medley, Graham, Ul-Hassan, Atiya, Bateman, Vicky, Gaze, William H., Witcomb, Luci, Grogono-Thomas, Rosemary, Kaler, Jasmeet, Russell, Claire L. and Wellington, E. M. H. (2011) Ovine pedomics : the first study of the ovine foot 16S rRNA-based microbiome. ISME Journal, Vol.5 (No.9). pp. 1426-1437. doi:10.1038/ismej.2011.25

Camsund, Daniel, Lindblad, Peter and Jaramillo, Alfonso (2011) Genetically engineered light sensors for control of bacterial gene expression. Biotechnology Journal, 6 (7). pp. 826-836. doi:10.1002/biot.201100091

Canal, F., Palygin, Oleg, Pankratov, Yuriy, Corrêa, Sônia A. L. and Müller, Jürgen (2011) Compartmentalization of the MAPK scaffold protein KSR1 modulates synaptic plasticity in hippocampal neurons. The FASEB Journal, Vol.25 (No.7). pp. 2362-2372. doi:10.1096/fj.10-173153

Carrera, Javier, Rodrigo, Guillermo, Singh, Vijai, Kirov, Boris and Jaramillo, Alfonso (2011) Empirical model and in vivo characterization of the bacterial response to synthetic gene expression show that ribosome allocation limits growth rate. Biotechnology Journal, 6 (7). pp. 773-783. doi:10.1002/biot.201100084

Carroll, Kathleen M., Simpson, Deborah M., Eyers, Claire E., Knight, Christopher G., Brownridge, Philip, Dunn, Warwick B., Winder, Catherine L., Lanthaler, Karin, Pir, Pınar, Malys, Naglis, Kell, Douglas B., Oliver, Stephen G., Gaskell, Simon J. and Beynon, Robert J. (2011) Absolute quantification of the glycolytic pathway in yeast : deployment of a complete qconCAT approach. Molecular & Cellular Proteomics, 10 (12). M111.007633. doi:10.1074/mcp.M111.007633

Carslake, David, Grant, Wyn, Green, Laura E., Cave, Jonathan A. K., Greaves, Justin, Keeling, Matthew James, McEldowney, John F., Weldegebriel, Habtu Tadesse and Medley, Graham (2011) Endemic cattle diseases : comparative epidemiology and governance. Royal Society of London. Philosophical Transactions B. Biological Sciences, Vol.366 (No.1573). pp. 1975-1986. doi:10.1098/rstb.2010.0396

Caves, Michael S., Derham, Barry K., Jezek, Jan and Freedman, R. B. (2011) Corrigendum to “The mechanism of inactivation of glucose oxidase from Penicillium amagasakiense under ambient storage conditions” [Enzyme Microb. Technol. 49 (2011) 79–87]. Enzyme and Microbial Technology, Vol.49 (No.4). p. 427. doi:10.1016/j.enzmictec.2011.07.001

Caves, Michael S., Derham, Barry K., Jezek, Jan and Freedman, R. B. (2011) The mechanism of inactivation of glucose oxidase from Penicillium amagasakiense under ambient storage conditions. Enzyme and Microbial Technology, Vol.49 (No.1). pp. 79-87. doi:10.1016/j.enzmictec.2011.03.004

Chan, Yi-Wah, Mohr, Remus, Millard, Andrew D., Holmes, Antony B., Larkum, Anthony W. D., Whitworth, Anna L., Mann, Nicholas H., Scanlan, David J., Hess, Wolfgang R. and Clokie, Martha R. J. (2011) Discovery of cyanophage genomes which contain mitochondrial DNA polymerase. Molecular Biology and Evolution, Vol.28 (No.8). pp. 2269-2274. doi:10.1093/molbev/msr041

Chandler, Dave, Bailey, Alastair, Tatchell, Mark (G. Mark), Davidson, G. (Gill), Greaves, Justin and Grant, Wyn (2011) The development, regulation and use of biopesticides for integrated pest management. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol.366 (No.1573). pp. 1987-1998. doi:10.1098/rstb.2010.0390

Chandler, Dave, Prince , G. and Pell, Judith K. (2011) Biological control of varroa with entomopathogenic fungi : a sustainable solution for a globally important pest? Microbiology Today, 39 (4). pp. 222-225.

Chaudhuri, Jyotiska, Kache, Vikas and Pires-da Silva, André Francisco (2011) Regulation of sexual plasticity in a nematode that produces males, females, and hermaphrodites. Current Biology, Vol.21 (No.18). pp. 1548-1551. doi:10.1016/j.cub.2011.08.009

Chaudhuri, Jyotiska, Parihar, Manish and Pires-da Silva, André Francisco (2011) An introduction to Worm Lab : from culturing worms to mutagenesis. Journal of Visualized Experiments, Vol.47 . Article no. e2293. doi:10.3791/2293

Chen, Yin, Patel, Nisha A., Crombie, Andrew, Scrivens, James H. and Murrell, J. C. (J. Colin) (2011) Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. Proceedings of the National Academy of Sciences, Vol.108 (No.43). pp. 17791-17796. doi:10.1073/pnas.1112928108

Chivasa, S., Tomé, Daniel F. A., Hamilton, J. M. and Slabas, A. R. (2011) Proteomic Analysis of Extracellular ATP-Regulated Proteins Identifies ATP Synthase -Subunit as a Novel Plant Cell Death Regulator. Molecular & Cellular Proteomics, Vol.10 (No.3). doi:10.1074/mcp.M110.003905

Choudhury, Hassanul G., Cameron, Alexander, Iwata, So and Beis, Konstantinos (2011) Structure and mechanism of the chalcogen-detoxifying protein TehB fromEscherichia coli. Biochemical Journal, Vol. 435 (No. 1). pp. 85-91. doi:10.1042/BJ20102014

Chung, K. T. and McCrae, Malcolm A. (2011) Regulation of gene expression by the NSP1 and NSP3 non-structural proteins of rotavirus. Archives of Virology, Vol.156 (No.12). pp. 2197-2203. doi:10.1007/s00705-011-1117-6

Clark, Corinna , Mendl, Mike, Jamieson, Jennifer, Arnone, Ashleigh, Waterman-Pearson, Avril and Murrell, J. C. (J. Colin) (2011) Do psychological and physiological stressors alter the acute pain response to castration and tail docking in lambs? Veterinary Anaesthesia and Analgesia, 38 (2). pp. 134-145. doi:10.1111/j.1467-2995.2011.00594.x

Cools, Katherine, Chope, Gemma A., Hammond, John P., Thompson, Andrew J. and Terry, Leon A. (Leon Alexander) (2011) Ethylene and 1-methylcyclopropene differentially regulate gene expression during onion sprout suppression. Plant Physiology, Vol.156 (No.3). pp. 1639-1652. doi:10.1104/pp.111.174979

Cools, Katherine, Chope, Gemma A., Hammond, John P., Thompson, Andrew J. and Terry, Leon A. (Leon Alexander) (2011) Onion gene expression in response to ethylene and 1-MCP. Plant Physiology, Vol.156 (No.3). pp. 1639-1652.

Dale, Nicholas (2011) Purinergic signaling in hypothalamic tanycytes : potential roles in chemosensing. Seminars in Cell and Developmental Biology, Vol.22 (No.2). pp. 237-244. doi:10.1016/j.semcdb.2011.02.024

Dame, Remus T. (Remus Thei), Kalmykowa, Olga J. and Grainger, David C. (2011) Chromosomal macrodomains and associated proteins : implications for DNA organization and replication in gram negative bacteria. PLoS Genetics, Vol.7 (No.6). e1002123. doi:10.1371/journal.pgen.1002123

Danon, Leon, Ford, Ashley P., House, Thomas A., Jewell, Chris P., Keeling, Matthew James, Roberts, Gareth O., Ross, Joshua V. and Vernon, Matthew C. (2011) Networks and the epidemiology of infectious disease. Interdisciplinary Perspectives on Infectious Diseases, Vol.2011 . Article no. 284909. doi:10.1155/2011/284909

Dawkar, Vishal V., Chikate, Yojana R., Gupta, Vidya S., Slade, Susan E. and Giri, Ashok P. (2011) Assimilatory potential of Helicoverpa armigera reared on host (Chickpea) and nonhost (Cassia tora) diets. Journal of Proteome Research, Vol.10 (No.11). pp. 5128-5138. doi:10.1021/pr200591m

Dehnen-Schmutz, Katharina (2011) Determining non-invasiveness in ornamental plants to build green lists. Journal of Applied Ecology, Vol.48 (No.6). pp. 1374-1380. doi:10.1111/j.1365-2664.2011.02061.x

Dekkers, Bas J. W., Willems, Leo, Bassel, George, van Bolderen-Veldkamp, R. P. (Marieke), Ligterink, Wilco, Hilhorst, Henk W. M. and Bentsink, Leónie (2011) Identification of reference genes for RT–qPCR expression analysis in Arabidopsis and tomato seeds. Plant and Cell Physiology, 53 (1). pp. 28-37. doi:10.1093/pcp/pcr113

Denness, Lucinda, McKenna, Joseph F., Segonzac, Cecile, Wormit, Alexandra, Madhou, Priya, Bennett, Mark, Mansfield, John, Zipfel, Cyril and Hamann, Thorsten (2011) Cell wall damage-induced lignin biosynthesis is regulated by a reactive oxygen species- and jasmonic acid-dependent process in arabidopsis. Plant Physiology, 156 (3). pp. 1364-1374. doi:10.1104/pp.111.175737

Devran, Z., Firat, A. F., Tor, M., Mutlu, N. and Elekçioglu, I. H. (2011) AFLP and SRAP markers linked to the mj gene for root-knot nematode resistance in cucumber. Scientia Agricola, Vol.68 (No.1). pp. 115-119.

Dingle, Kate E., Griffiths, David, Didelot, Xavier, Evans, Jessica, Vaughan, Alison, Kachrimanidou, Melina, Stoesser, Nicole, Jolley, Keith A., Golubchik, Tanya, Harding, Rosalind M., Peto, Tim E., Fawley, Warren, Walker, A. Sarah, Wilcox, Mark and Crook, Derrick W. (2011) Clinical Clostridium difficile : clonality and pathogenicity locus diversity. PLoS One, 6 (5). e19993. doi:10.1371/journal.pone.0019993

Dowler, Elizabeth, Kneafsey, Moya, Lambie, Hannah, Inman, Alex and Collier, Rosemary (2011) Thinking about 'food security' : engaging with UK consumers. Critical Public Health, Vol.21 (No.4). pp. 403-416. doi:10.1080/09581596.2011.620945

Downey, Mike J., Jeziorska, Danuta M., Ott, Sascha, Tamai, T. Katherine, Koentges, Georgy, Vance, Keith W. and Bretschneider, Till (2011) Extracting fluorescent reporter time courses of cell lineages from high-throughput microscopy at low temporal resolution. PLoS ONE, Vol.6 (No.12). e27886. doi:10.1371/journal.pone.0027886

Driscoll, Erin E., Hoffman, Joseph I., Green, Laura E., Medley, Graham and Amos, William (2011) A preliminary study of genetic factors that influence susceptibility to bovine tuberculosis in the British cattle herd. PLoS One, Vol.6 (No.4). e18806. doi:10.1371/journal.pone.0018806

Drummond, Sheona P., Hildyard, John, Firczuk, Helena, Reamtong, Onrapak, Li, Ning, Kannambath, Shichina, Claydon, Amy J., Beynon, R. J. (Robert J.), Eyers, Claire E. and McCarthy, John E. G. (2011) Diauxic shift-dependent relocalization of decapping activators Dhh1 and Pat1 to polysomal complexes. Nucleic Acids Research, Vol.39 (No.17). pp. 7764-7774. doi:10.1371/journal.pone.0023630

Eastmond, Peter J., Quettier, Anne-Laure, Kroon, Johan T., Craddock, Christian P., Adams, Nicolette and Slabas, Antoni R. (2011) A phosphatidate phosphatase double mutant provides a new insight into plant membrane lipid homeostasis. Plant Signaling & Behavior, Vol.6 (No.4). pp. 526-527. doi:10.4161/psb.6.4.14748

Easton, A. J. (Andrew J.), Scott, P. D. (Paul D.), Edworthy, Nicole Lynn, Meng, Bo, Marriott, Anthony C. and Dimmock, N. J. (2011) A novel broad-spectrum treatment for respiratory virus infections : influenza-based defective interfering virus provides protection against pneumovirus infection in vivo. Vaccine, Vol.29 (No.15). pp. 2777-2784. doi:10.1016/j.vaccine.2011.01.102

Eastwood, Daniel C., Bains, N. K., Henderson, Janey and Burton, Kerry S. (2011) Genome organization and transcription response to harvest of two Metallothionein-like genes in agaricus bisporus fruiting bodies. Journal of Microbiology and Biotechnology, Volume 21 (Number 5). pp. 455-463. doi:10.4014/jmb.1007.07031

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Gaze, William H., Morgan, Gina, Zhang, Lihong and Wellington, E. M. H. (2011) Mimivirus-like particles in Acanthamoebae from sewage sludge. Emerging Infectious Diseases , Volume 17 (Number 6). pp. 1127-1129. doi:10.3201/eid1706.101282

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Gladders, P. (Peter), Smith, J. E., Kirkpatrick, L., Clewes, E., Grant, C., Barbara, Dez J., Barnes, A. V. and Lane, C. R. (2011) First record of verticillium wilt (Verticillium longisporum) in winter oilseed rape in the UK. New Disease Reports, Volume 23 (Number 8). doi:10.5197/j.2044-0588.2011.023.008

Glykys, Doris J., Szilvay, Géza R., Tortosa, Pablo, Suárez Diez, María, Jaramillo, Alfonso and Banta, Scott (2011) Pushing the limits of automatic computational protein design : design, expression, and characterization of a large synthetic protein based on a fungal laccase scaffold. Systems and synthetic biology, 5 (1-2). pp. 45-58. doi:10.1007/s11693-011-9080-9

Granier, Céline, Gurchenkov, Vasily, Perea-Gomez, Aitana, Camus, Anne, Ott, Sascha, Papanayotou, Costis, Iranzo, Julian, Moreau, Anne, Reid, John, Koentges, Georgy, Sabéran-Djoneidi, Délara and Collignon, Jérôme (2011) Nodal cis-regulatory elements reveal epiblast and primitive endoderm heterogeneity in the peri-implantation mouse embryo. Developmental Biology, Vol.349 (No.2). pp. 350-362. doi:10.1016/j.ydbio.2010.10.036

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Grob, Carolina, Hartmann, Manuela, Zubkov, Mikhail V. and Scanlan, David J. (2011) Invariable biomass-specific primary production of taxonomically discrete picoeukaryote groups across the Atlantic Ocean. Environmental Microbiology, 13 (12). pp. 3266-3274. doi:10.1111/j.1462-2920.2011.02586.x

Guttman, David S., Schwessinger, Benjamin, Roux, Milena, Kadota, Yasuhiro, Ntoukakis, Vardis, Sklenar, Jan, Jones, Alexandra M. and Zipfel, Cyril (2011) Phosphorylation-Dependent Differential Regulation of Plant Growth, Cell Death, and Innate Immunity by the Regulatory Receptor-Like Kinase BAK1. PLoS Genetics, Vol. 7 (No. 4). e1002046. doi:10.1371/journal.pgen.1002046

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Hammond, John P., Broadley, Martin R., Bowen, Helen C., Spracklen, William P., Hayden, Rory M. and White, Philip J. (2011) Gene expression changes in phosphorus deficient potato (Solanum tuberosum L.) leaves and the potential for diagnostic gene expression markers. PLoS ONE, Vol.6 (No.9). e24606. doi:10.1371/journal.pone.0024606

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Harrison, Freya, Sciberras, James and James, Richard (2011) Strength of social tie predicts cooperative investment in a human social network. PLoS One, 6 (3). e18338. doi:10.1371/journal.pone.0018338

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Sanghera, Narinder, Correia, Bruno E. F. S, Correia, Joana R. S., Ludwig, Christian, Agarwal, Sonya, Nakamura, Hironori K., Kuwata, Kazuo, Samain, Eric, Gill, Andrew C., Bonev, Boyan B. and Pinheiro, Teresa J. T. (2011) Deciphering the molecular details for the binding of the prion protein to main ganglioside GM1 of neuronal membranes. Chemistry & Biology, Vol.18 (No.11). pp. 1422-1431. doi:10.1016/j.chembiol.2011.08.016

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Schmidt Andersen, Maj-Britt, Hall, Sharon A. and Dragsted, Lars Ove (2011) Identification of European allergy patterns to the allergen families PR-10, LTP, and profilin from rosaceae fruits. Clinical Reviews in Allergy & Immunology, Vol.41 (No.1). pp. 4-19. doi:10.1007/s12016-009-8177-3

Scott, P. D. (Paul D.), Meng, B. (Bo), Marriott, Anthony C., Easton, A. J. (Andrew J.) and Dimmock, N. J. (2011) Defective interfering influenza A virus protects in vivo against disease caused by a heterologous influenza B virus. Journal of General Virology, Vol.92 (No.9). pp. 2122-2132. doi:10.1099/vir.0.034132-0

Scott, P. D. (Paul D.), Meng, Bo, Marriott, Anthony C., Easton, A. J. (Andrew J.) and Dimmock, N. J. (2011) Defective interfering influenza virus confers only short-lived protection against influenza virus disease : evidence for a role for adaptive immunity in DI virus-mediated protection in vivo. Vaccine, Vol.29 (No.38). pp. 6584-6591. doi:10.1016/j.vaccine.2011.06.114

Scott, P. D. (Paul D.), Meng, Bo, Marriott, Anthony C., Easton, A. J. (Andrew J.) and Dimmock, N. J. (2011) Defective interfering virus protects elderly mice from influenza. Virology Journal, Vol.8 (No.212). doi:10.1186/1743-422X-8-212

Shakes, Diane C., Neva, Bryan J., Huynh, Henry, Chaudhuri, Jyotiska and Pires-da Silva, André Francisco (2011) Asymmetric spermatocyte division as a mechanism for controlling sex ratios. Nature Communications, Vol.2 (No.1). Article no. 157. doi:10.1038/ncomms1160

Shi, Xiao Li, Lepère, Cécile, Scanlan, David J. and Vaulot, Daniel (2011) Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean. PL o S One, Vol.6 (No.4). e18979 . doi:10.1371/journal.pone.0018979

Siddique, Shahid, Wieczorek, Krzysztof, Szakasits, Dagmar, Kreil, David and Bohlmann, Holger (2011) The promoter of a plant defensin gene directs specific expression in nematode-induced syncytia in Arabidopsis roots. Plant Physiology and Biochemistry, Vol.49 (No.10). pp. 1100-1107. doi:10.1016/j.plaphy.2011.07.005

Silver, Barry R., Fülöp, Vilmos and Unwin, Patrick R. (2011) Protein crystallization at oil/water interfaces. New Journal of Chemistry, Vol.35 (No.3). pp. 602-606. doi:10.1039/c0nj00822b

Singh, Shivani S., Typas, Athanasios, Hengge, Regine and Grainger, David C. (2011) Escherichia coli σ70 senses sequence and conformation of the promoter spacer region. Nucleic Acids Research, Vol.39 (No.12). pp. 5109-5118. doi:10.1093/nar/gkr080

Skardelly, Marco, Gaber, Khaled, Burdack, Swen, Scheidt, Franziska, Hilbig, Heidegard, Boltze, Johannes, Förschler, Annette, Schwarz, Sigrid, Schwarz, Johannes, Meixensberger, Jürgen and Schuhmann, Martin U. (2011) Long-term benefit of human fetal neuronal progenitor cell transplantation in a clinically adapted model after traumatic brain injury. Journal of Neurotrauma, 28 (3). pp. 401-414. doi:10.1089/neu.2010.1526

Skirvin, David J., Kravar-Garde, L. (Lidija), Reynolds, K., Wright, C. and Mead, A. (Andrew) (2011) The effect of within-crop habitat manipulations on the conservation biological control of aphids in field-grown lettuce. Bulletin of Entomological Research, Vol.101 (No.6). pp. 623-631. doi:10.1017/S0007485310000659

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Smith, C., Ondračková, M., Spence, R., Adams, Sally, Betts, D. S. and Mallon, E. (2011) Pathogen-mediated selection for MHC variability in wild zebrafish. Evolutionary Ecology Research, Vol.67 (No.4). pp. 217-218.

Smith, C. M. (Claire M.), Hirst, R. A., Bankart, Michael J. G., Jones, D. W. (David W.), Easton, A. J. (Andrew J.), Andrew, P. W. and O'Callaghan, Christopher (2011) Cooling of cilia allows functional analysis of the beat pattern for diagnostic testing. Chest, Vol.140 (No.1). pp. 186-190. doi:10.1378/chest.10-1920

Smith, Edward M., Monaghan, E. M. (Emma M.), Huntley, Selene J. and Green, Laura E. (2011) Short communication : preliminary investigation into the effect of freezing and a cryopreservant on the recovery of mastitis pathogens from ewe milk. Journal of Dairy Science, Vol.94 (No.10). pp. 4850-4855. doi:10.3168/jds.2010-4076

Sonoda, Yo, Newstead, Simon, Hu, Nien-Jen, Alguel, Yilmaz, Nji, Emmanuel, Beis, Konstantinos, Yashiro, Shoko, Lee, Chiara, Leung, James, Cameron, Alexander, Byrne, Bernadette, Iwata, So and Drew, David (2011) Benchmarking Membrane Protein Detergent Stability for Improving Throughput of High-Resolution X-ray Structures. Structure, Vol. 19 (No. 1). pp. 17-25. doi:10.1016/j.str.2010.12.001

Sopeña, Fatima, Villaverde, Jaime, Maqueda, Celia and Morillo, Esmeralda (2011) Photostabilization of the herbicide norflurazon microencapsulated with ethylcellulose in the soil–water system. Journal of Hazardous Materials, Vol. 195 . pp. 298-305. doi:10.1016/j.jhazmat.2011.08.039

Sorieul, Mathias, Langhans, Markus, Guetzoyan, Lucie J., Hillmer, Stefan, Clarkson, Guy J., Lord, Mike, Roberts, L. M. (Lynne M.), Robinson, David G., Spooner, Robert A. and Frigerio, Lorenzo (2011) An Exo2 derivative affects ER and Golgi morphology and vacuolar sorting in a tissue-specific manner in arabidopsis. Traffic, Vol.12 (No.11). pp. 1552-1562. doi:10.1111/j.1600-0854.2011.01258.x

Soyer, Orkun S. and Goldstein, Richard A. (2011) Evolution of response dynamics underlying bacterial chemotaxis. BMC Evolutionary Biology, 11 (1). 240. doi:10.1186/1471-2148-11-240

Sparkes, Imogen, Hawes, C. R. and Frigerio, Lorenzo (2011) FrontiERs: movers and shapers of the higher plant cortical endoplasmic reticulum. Current Opinion in Plant Biology, Vol.14 (No.6). pp. 658-665. doi:10.1016/j.pbi.2011.07.006

Stanne, Tara M., Kushwaha, Manish, Wand, Matthew, Taylor, Jesse E and Rudenko, Gloria (2011) TbISWI regulates multiple polymerase I (Pol I)-transcribed loci and is present at Pol II transcription boundaries in Trypanosoma brucei. Eukaryotic Cell, 10 (7). pp. 964-976. doi:10.1128/EC.05048-11

Stansfeld, Phillip J. and Sansom, Mark S. P. (2011) From coarse grained to atomistic : a serial multiscale approach to membrane protein simulations. Journal of Chemical Theory and Computation, 7 (4). pp. 1157-1166. doi:10.1021/ct100569y

Stansfeld, Phillip J. and Sansom, Mark S.P. (2011) Molecular simulation approaches to membrane proteins. Structure, 19 (11). pp. 1562-1572. doi:10.1016/j.str.2011.10.002

Statham, Poppy, Green, Laura E. and Mendl, M. (Michael) (2011) A longitudinal study of the effects of providing straw at different stages of life on tail-biting and other behaviour in commercially housed pigs. Applied Animal Behaviour Science, Vol.134 (No.3). pp. 100-108. doi:10.1016/j.applanim.2011.08.009

Statham, Poppy, Green, Laura E. and Mendl, M. (Michael) (2011) A longitudinal study of the effects of providing straw at different stages of life on tail-biting and other behaviour in commercially housed pigs. Applied Animal Behaviour Science, Vol.134 (No.3). pp. 100-108. doi:10.1016/j.applanim.2011.08.009

Streit, Anne K., Netter, Michael F., Kempf, Franca, Walecki, Magdalena, Rinné, Susanne, Bollepalli, Murali K., Preisig-Müller, Regina, Renigunta, Vijay, Daut, Jürgen, Baukrowitz, Thomas, Sansom, Mark S. P., Stansfeld, Phillip J. and Decher, Niels (2011) A specific two-pore domain potassium channel blocker defines the structure of the TASK-1 Open Pore. Journal of Biological Chemistry, 286 (16). pp. 13977-13984. doi:10.1074/jbc.M111.227884

Studholme, David J., Wasukira, Arthur, Paszkiewicz, Konrad, Aritua, Valente, Thwaites, Richard, Smith, Julian and Grant, Murray (2011) Draft genome sequences of xanthomonas sacchari and two banana-associated xanthomonads reveal insights into the xanthomonas group 1 clade. Genes, 2 (4). pp. 1050-1065. doi:10.3390/genes2041050

Sykacek, Peter, Kreil, David, Meadows, Lisa A, Auburn, Richard P, Fischer, Bettina, Russell, Steven and Micklem, Gos (2011) The impact of quantitative optimization of hybridization conditions on gene expression analysis. BMC Bioinformatics, Vol.12 (No.1). p. 73. doi:10.1186/1471-2105-12-73

Tait, Joyce and Barker, Guy C. (2011) Global food security and the governance of modern biotechnologies. EMBO reports, Vol.12 (No.8). pp. 763-768. doi:10.1038/embor.2011.135

Travis, Emma Rachel, Gaze, William H., Pontiroli, Alessandra, Sweeney, Francis P., Porter, David, Mason, Sam, Keeling, Matthew James, Jones, Rebecca M., Sawyer, Jason, Aranaz, Alicia, Castellanos Rizaldos, Elena, Cork, Jennifer, Delahay, Richard J., Wilson, Gavin J., Hewinson, R. Glyn, Courtenay, Orin and Wellington, E. M. H. (2011) An inter-laboratory validation of a real time PCR assay to measure host excretion of bacterial pathogens, particularly of mycobacterium bovis. PLoS One, Vol.6 (No.11). e27369. doi:10.1371/journal.pone.0027369

Tsibidis, George D., Burroughs, Nigel John, Gaze, William H. and Wellington, E. M. H. (2011) Semi-automated Acanthamoeba polyphaga detection and computation of Salmonella typhimurium concentration in spatio-temporal images. Micron, Vol.42 (No.8). pp. 911-920. doi:10.1016/j.micron.2011.06.010

Tuplin, Andrew, Evans, David J., Buckley, A., Jones, I. M. (Ian M.), Gould, E. and Gritsun, T. S. (2011) Replication enhancer elements within the open reading frame of tick-borne encephalitis virus and their evolution within the Flavivirus genus. Nucleic Acids Research, Vol.39 (No.16). pp. 7034-7048. doi:10.1093/nar/gkr237

Usha, Veeraraghavan, Gurcha, Sudagar S., Lovering, Andrew L., Lloyd, Adrian, Papaemmanouil, A., Reynolds, Robert C. and Besra, Gurdyal S. (2011) Identification of novel diphenyl urea inhibitors of Mt-GuaB2 active against Mycobacterium tuberculosis. Microbiology, Vol.157 (No.1). pp. 290-299. doi:10.1099/mic.0.042549-0

Vernon, Matthew C. (2011) Demographics of cattle movements in the United Kingdom. BMC Veterinary Research, Vol.7 . p. 31. doi:10.1186/1746-6148-7-31

Vila-Aiub, Martin M., Neve, Paul and Roux, Fabrice (2011) A unified approach to the estimation and interpretation of resistance costs in plants. Heredity, Vol.107 (No.5). pp. 386-394. doi:10.1038/hdy.2011.29

Vogwill, T., Fenton, A. and Brockhurst, M. A. (2011) Coevolving parasites enhance the diversity-decreasing effect of dispersal. Biology Letters, Vol.7 (No.4). pp. 578-580. doi:10.1098/rsbl.2011.0071

Wagner, Daniel-Christoph, Riegelsberger, Ute Maria, Michalk, Stefanie, Härtig, Wolfgang, Kranz, Alexander and Boltze, Johannes (2011) Cleaved caspase-3 expression after experimental stroke exhibits different phenotypes and is predominantly non-apoptotic. Brain Research, 1381 . pp. 237-242. doi:10.1016/j.brainres.2011.01.041

Waldvogel, Eva, Herbig, Alexander, Battke, Florian, Amin, Rafat, Nentwich, Merle, Nieselt, Kay, Ellingsen, Trond E., Wentzel, Alexander, Hodgson, D. A., Wohlleben, Wolfgang and Mast, Yvonne (2011) The PII protein GlnK is a pleiotropic regulator for morphological differentiation and secondary metabolism in Streptomyces coelicolor. Applied Microbiology and Biotechnology, Vol.92 (No.6). pp. 1219-1236. doi:10.1007/s00253-011-3644-1

Watt, M. S., Bloomberg, M. and Finch-Savage, William E. (2011) Development of a hydrothermal time model that accurately characterises how thermoinhibition regulates seed germination. Plant, Cell & Environment, Vol.34 (No.5). pp. 870-876. doi:10.1111/j.1365-3040.2011.02292.x

Weyand, Simone, Shimamura, Tatsuro, Beckstein, Oliver, Sansom, M. S. P. (Mark S. P.), Iwata, So, Henderson, P. J. F. (Peter J. F.) and Cameron, Alexander (2011) The alternating access mechanism of transport as observed in the sodium-hydantoin transporter Mhp1. Journal of Synchrotron Radiation, Vol. 18 (No. 1). pp. 20-23. doi:10.1107/S0909049510032449

Weynberg, Karen Dawn, Allen, Michael J., Gilg, Ilana C., Scanlan, David J. and Wilson, William H. (2011) Genome sequence of Ostreococcus tauri virus OtV-2 enlightens the role of picoeukaryote niche separation in the ocean. Journal of Virology, Vol.85 (No.9). pp. 4520-4529. doi:10.1128/JVI.02131-10

Wilkinson, Katy, Grant, Wyn, Green, Laura E., Hunter, Stephen, Jeger, Michael J., Lowe, Philip, Medley, Graham, Mills, P. R., Phillipson, Jeremy, Poppy, Guy M. and Waage, J. K. (2011) Infectious diseases of animals and plants : an interdisciplinary approach. Royal Society of London. Philosophical Transactions B. , Vol.366 (No.1573). pp. 1933-1942. doi:10.1098/rstb.2010.0415

Win, Joe, Kamoun, Sophien and Jones, Alexandra M. (2011) Purification of effector–target protein complexes via transient expression in Nicotiana benthamiana. Methods in Molecular Biology, Volume 712 . pp. 181-194. doi:10.1007/978-1-61737-998-7_15

Wise, Helen M., Barbezange, Cyril, Jagger, Brett W., Dalton, Rosa Maria, Gog, Julia R., Curran, Martin D., Taubenberger, Jeffery, Anderson, Emma C. and Digard, Paul (2011) Overlapping signals for translational regulation and packaging of influenza A virus segment 2. Nucleic Acids Research, Vol.39 (No.17). pp. 7775-7790. doi:10.1371/journal.pone.0023630

Yamamoto, Kaneyoshi, Ishihama, Akira, Busby, S. (Stephen) and Grainger, David C. (2011) The escherichia coli K-12 MntR miniregulon includes dps, which encodes the major stationary-phase DNA-binding protein. Journal of Bacteriology, Volume 193 (Number 6). pp. 1477-1480. doi:10.1128/JB.01230-10

Yasuda, Yoshinari, Miyamoto, Yoichi, Yamashiro, Tomoko, Asally, Munehiro, Masui, Ayumi, Wong, Chin, Loveland, Kate L and Yoneda, Yoshihiro (2011) Nuclear retention of importin α coordinates cell fate through changes in gene expression. The EMBO Journal, 31 (1). pp. 83-94. doi:10.1038/emboj.2011.360

Yuan, Yinyin, Li, Chang-Tsun and Windram, Oliver P. (2011) Directed partial correlation : inferring large-scale gene regulatory network through induced topology disruptions. PL o S One, Vol.6 (No.4). doi:10.1371/journal.pone.0016835

Zhang, Kefeng, Hilton, Howard W., Greenwood, Duncan J. and Thompson, Andrew J. (2011) A rigorous approach of determining FAO56 dual crop coefficient using soil sensor measurements and inverse modeling techniques. Agricultural Water Management . doi:10.1016/j.agwat.2011.02.001

Zur Nedden, Stephanie, Hawley, Simon, Pentland, Naomi, Hardie, D. G. (D. Grahame), Doney, Alexander S. and Frenguelli, Bruno G. (2011) Intracellular ATP influences synaptic plasticity in area CA1 of rat hippocampus via metabolism to adenosine and activity-dependent activation of adenosine A1 receptors. The Journal of Neuroscience, Vol.31 (No.16). pp. 6221-6234. doi:10.1523/JNEUROSCI.4039-10.2011

van Nimwegen, Erik, Martins, Bruno M. C. and Swain, Peter S. (2011) Trade-offs and constraints in allosteric sensing. PLoS Computational Biology, 7 (11). e1002261. doi:10.1371/journal.pcbi.1002261

van der Gast, Christopher J., Gosling, Paul, Tiwari, Bela and Bending, G. D. (2011) Spatial scaling of arbuscular mycorrhizal fungal diversity is affected by farming practice. Environmental Microbiology, Vol.13 (No.1). pp. 241-249. doi:10.1111/j.1462-2920.2010.02326.x

Ó Lochlainn, Seosamh, Bowen, Helen C., Fray, R. G. , Hammond, John P., King, Graham J., White, Philip J., Graham, Neil S. and Broadley, Martin R. (2011) Tandem quadruplication of HMA4 in the zinc (Zn) and cadmium (Cd) hyperaccumulator noccaea caerulescens. PL o S One, Vol.6 (No.3). e17814. doi:10.1371/journal.pone.0017814

Łabaj, Paweł P, Sykacek, Peter and Kreil, David (2011) An analysis of single amino acid repeats as use case for application specific background models. BMC Bioinformatics, Vol.12 (No.1). p. 173. doi:10.1186/1471-2105-12-173

Book Item

Bassel, George, Holdsworth, Michael J. and Provart, Nicholas J. (2011) Seed bioinformatics. In: Kermode, A., (ed.) Seed Dormancy. Methods in Molecular Biology, 773 . Humana Press, pp. 403-419. ISBN 9781617792304

Battke, F., Herbig, A., Wentzel, A., Jakobsen, Ø. M., Bonin, M., Hodgson, D. A., Wohlleben, W., Ellingsen, T. E. and Nieselt, K. (2011) A Technical Platform for Generating Reproducible Expression Data from Streptomyces coelicolor Batch Cultivations. In: Arabnia, H.R and Tran, Q-N., (eds.) Software Tools and Algorithms for Biological Systems. Advances in Experimental Medicine and Biology , Vol.696 . New York: Springer, pp. 3-15. ISBN 978-1-4419-7045-9

Chen, Yin, Dumont, Marc G., Neufeld, Joshua D. and Murrell, J. C. (J. Colin) (2011) Towards “focused” metagenomics : a case study combining DNA stable-isotope probing, multiple displacement amplification, and metagenomics. In: Handbook of Molecular Microbial Ecology I : Metagenomics and Complementary Approaches. Handbook of Molecular Microbial Ecology . NJ, USA: John Wiley & Sons Ltd., pp. 491-496. ISBN 9780470644799

Chen, Yin, Kumaresan, Deepak and Murrell, J. C. (J. Colin) (2011) Stable-isotope probing and its application in soil microbiology. In: Handbook of Soil Science (2nd Edition). CRC Press, pp. 30-38. ISBN 978-0-8493-3136-7

Crombie, Andrew and Murrell, J. C. (J. Colin) (2011) Development of a system for genetic manipulation of the facultative methanotroph methylocella silvestris BL2. In: Rosenzweig, A. C. and Ragsdale, Stephen W., (eds.) Methods in methane metabolism. Part B , Methanotrophy. Methods in enzymology, Volume 495 . Amsterdam, [Netherlands] ; Boston, [Mass.] : Elsevier/Academic Press, pp. 119-133. ISBN 9780123869050

Footitt, Steven and Finch-Savage, William E. (2011) Production of Seed Samples for the Effective Molecular Analysis of Dormancy Cycling in Arabidopsis. In: Seed Dormancy: Methods and Protocols. Methods in Molecular Biology, Vol.773 . United States: Humana Press, Inc., pp. 65-79. ISBN 978-1-61779-230-4

Ghaffari, Reza, Zhang, Fu, Iliescu, Daciana, Hines, Evor, Leeson, Mark S. and Napier, R. (2011) Field asymmetric ion mobility spectrometry based plant disease detection : intelligent systems approach. In: Qahwaji, Rami, 1972- and Green, Roger, 1951- and Hines, Evor, 1957-, (eds.) Applied signal and image processing : multidisciplinary advancements. Hershey, PA: IGI Global, pp. 102-114. ISBN 9781609604776

Ghaffari, Reza, Zhang, Fu, Iliescu, Daciana, Hines, Evor, Leeson, Mark S. and Napier, R. (2011) The analysis of plant's organic volatiles compounds with electronic nose and pattern recognition techniques. In: Qahwaji, Rami, 1972- and Green, Roger, 1951- and Hines, Evor, 1957-, (eds.) Applied signal and image processing : multidisciplinary advancements. Hershey, PA: IGI Global, pp. 115-126. ISBN 9781609604776

Lomonossoff, George P. and Evans, David J. (2011) Applications of plant viruses in bionanotechnology. In: Palmer , Kenneth (Kenneth E.) and Gleba , Yuri, (eds.) Plant viral vectors. Current Topics in Microbiology and Immunology, 375 . Berlin ; Heidelberg: Springer, pp. 61-87. ISBN 9783642408281

Malys, Naglis, Wishart, Jill A., Oliver, Stephen G. and McCarthy, John E. G. (2011) Protein production in Saccharomyces cerevisiae for systems biology studies. In: Jameson, Daniel and Verma , Malkhey and Westerhoff, Hans V. , (eds.) Methods in Systems Biology. Methods in Enzymology, Vol.500 . Academic Press, pp. 197-212. ISBN 9780123851185

Smith, Thomas J. and Murrell, J. C. (J. Colin) (2011) Mutagenesis of soluble methane monooxygenase. In: Rosenzweig, A. C. and Ragsdale, Stephen W., (eds.) Methods in methane metabolism. Part B , Methanotrophy. Methods in enzymology, Volume 495 . Amsterdam, [Netherlands] ; Boston, [Mass.] : Elsevier/Academic Press, pp. 135-147. ISBN 9780123869050

Walley, Peter Glen and Buchanan-Wollaston, Vicky (2011) Brassicas. In: Terry, L., (ed.) Health promoting properties of fruit and vegetables. Oxfordshire, UK: CABI, pp. 74-90. ISBN 978-1-8459-3528-3

Conference Item

Higginson, A., Haynes, M., Probert, William J. M. and Boreham, P. (2011) Interrelationships and social determinants of residential location moves and unemployment duration in Australia. In: 2011 HILDA conference, Melbourne, Australia, 14-15 July 2011. Published in: Proceedings of the 2011 HILDA conference ISSN 2202-9923.

Humayun, A., Raza, Shan-e-Ahmed, Waddington, C., Abouna, Sylvie, Khan, Michael and Rajpoot, Nasir M. (Nasir Mahmood) (2011) A novel framework for molecular co-expression pattern analysis in multi-channel toponome fluorescence images. In: MIAAB 2011 (Microscopic Image Analysis with Applications in Biology), Heidelberg, Germany, 2 Sep 2011. Published in: Proceedings of the 2011 Microscopic Image Analysis with Applications in Biology (Submitted)

Langenkämper, Daniel, Kölling, Jan, Abouna, Sylvie, Khan, Michael, Niehaus, Karsten and Nattkemper, Tim W. (2011) TICAL - a web-tool for multivariate image clustering and data topology preserving visualization. In: MIAAB 2011 (Microscopic Image Analysis with Applications in Biology), Heidelberg, Germany, 2 Sep 2011. Published in: Proceedings of the 2011 Microscopic Image Analysis with Applications in Biology pp. 1-5.

Nicolaides, K. H., Slade, Susan E., Breslin, Eamonn, Scrivens, James H. and Thornton, Steven (2011) Identification of predictive biomarkers for pre-eclampsia by plasma proteomic profiling. In: 30th Annual Meeting of the Society-for-Maternal-Fetal-Medicine, Chicago, Ilinois, 01-06 Feb 2010. Published in: American Journal of Obstetrics and Gynecology, Volume 204 (Supplement 1). S294. ISSN 0002-9378.

Walley, Peter Glen (2011) Improving broccoli post harvest quality. In: UK Brassica Research Community Annual Meeting, Loughborough, Leicestershire, 17th May 2011. Published in: Proceeding of the 2011 UK Brassica Research Community Annual Meeting

Journal Item

Booyjzsen, Claire, Scarff, Charlotte A., Moreton, Ben, Portman, Ian J., Costantini, Giovanni, Scrivens, James H., Mukherjee, Arindam and Sadler, P. J. (2011) Human transferrin : association and fibril formation. American Chemical Society. Abstracts of Papers (at the National Meeting), Vol.241 (No.171-BIOL ).

Bruce, Gareth, Gu, Mei, Shi, Nongnong, Liu, Yule and Hong, Yiguo (2011) Influence of retinoblastoma-related gene silencing on the initiation of DNA replication by African cassava mosaic virus Rep in cells of mature leaves in Nicotiana benthamiana plants. Virology Journal, Vol.8 (No.1). p. 561. doi:10.1186/1743-422X-8-561

Frenguelli, Bruno G. (2011) Purinergic signalling between neurones and glia : for those about to rock. Seminars in Cell and Developmental Biology, Vol.22 (No.2). p. 193. doi:10.1016/j.semcdb.2011.03.001

Macpherson, Julie V., Dudin, Petr V., Ebejer, Neil, Güell, Aleix G., McKelvey, Kim M. (Kim Martin) and Unwin, Patrick R. (2011) Further electrochemical adventures with single walled carbon nanotubes. American Chemical Society. Abstracts of Papers (at the National Meeting), Vol.241 (No. 1225-CHED ).

McCarthy, John E. G. (2011) Synthetic biology themed issue. Integrative Biology, Volume 3 (Number 2). p. 85. doi:10.1039/c1ib90001c

Sabalza, Maite, Miralpeix, Bruna, Twyman, Richard M., Capell, Teresa and Christou, Paul (2011) EU legitimizes GM crop exclusion zones. Nature Biotechnology, Volume 29 (Number 4). pp. 315-317. doi:10.1038/nbt.1840

Performance

Collier, Rosemary and Teakle, Graham R. (2011) Farming Today. [Performance]. 28/1/11.

Collier, Rosemary, Teakle, Graham R. and Allender, Charlotte J. (2011) Farming Today. [Performance]. 13/8/11 .