A

(2016) Taxonomy of the order Mononegavirales : update 2016. Archives of Virology, 161 (8). pp. 2351-2360. doi:10.1007/s00705-016-2880-1

Agoti, Charles N., Kiyuka, Patience K., Kamau, Everlyn, Munywoki, Patrick K., Bett, Anne, van der Hoek, Lia, Kellam, Paul, Nokes, D. James and Cotten, Matthew (2016) Human Rhinovirus B and C genomes from rural coastal Kenya. Genome Announcements, 4 (4). pp. 1-2. e00751. doi:10.1128/genomeA.00751-16

Alberti, Fabrizio (2016) Current trends in natural products research from the CBNP10 Symposium at Warwick. Exchanges: the Warwick Research Journal, 4 (1).

Alcock, Felicity, Stansfeld, Phillip J., Basit, Hajra, Habersetzer, Johann, Baker, Matthew A. B., Palmer, Tracy, Wallace, Mark I. and Berks, Ben C. (2016) Assembling the tat protein translocase. eLife, 5 . e20718. doi:10.7554/eLife.20718

Alford, Justine E., Marongiu, Michela, Watkins, Gemma L. and Anderson, Emma C. (2016) Human immunodeficiency virus type 2 (HIV-2) Gag is trafficked in an AP-3 and AP-5 dependent manner. PLoS One, 11 (7). e0158941. doi:10.1371/journal.pone.0158941

Alguel, Y., Cameron, Alexander, Diallinas, G. and Byrne, B. (2016) Transporter oligomerization : form and function. Biochemical Society Transactions, 44 (6). pp. 1737-1744. doi:10.1042/BST20160217

Alguel, Yilmaz, Amillis, Sotiris, Leung, James, Lambrinidis, George, Capaldi, Stefano, Scull, Nicola J., Craven, Gregory, Iwata, So, Armstrong, Alan, Mikros, Emmanuel, Diallinas, George, Cameron, Alexander and Byrne, Bernadette (2016) Structure of eukaryotic purine/H+ symporter UapA suggests a role for homodimerization in transport activity. Nature Communications, 7 . pp. 1-9. 11336. doi:10.1038/ncomms11336

Allaby, Robin G., Kitchen, James and Fuller, Dorian Q. (2016) Surprisingly low limits of selection in plant domestication. Evolutionary Bioinformatics (2). pp. 41-51. doi:10.4137/EBO.S33495

Ansari, M. Azim and Didelot, Xavier (2016) Bayesian inference of the evolution of a phenotype distribution on a phylogenetic tree. Genetics, 204 (1). pp. 89-98. doi:10.1534/genetics.116.190496

Araújo, Carlos Leonardo de A., Dias, Larissa M., Veras, Adonney A. O., Alves, Jorianne T. C., Cavalcante, Ana Lídia Q., Dowson, Christopher G., Azevedo, Vasco, Ramos, Rommel T. J., Silva, Artur and Carneiro, Adriana R. (2016) Whole-genome sequence of Corynebacterium pseudotuberculosis 262 biovar equi isolated from cow milk. Genome Announcements, 4 (2). e00176. doi:10.1128/genomeA.00176-16

Archer, Nathan, Walsh, Mark, Shahrezaie, Vahid and Hebenstreit, Daniel (2016) Modeling enzyme processivity reveals that RNA-Seq libraries are biased in characteristic and correctable ways. Cell Systems, 3 (5). pp. 467-479. doi:10.1016/j.cels.2016.10.012

Arias Ugarte, Renzo, Devarajan, Deepa, Mushinski, Ryan and Hudnall, Todd W. (2016) Antimony(v) cations for the selective catalytic transformation of aldehydes into symmetric ethers, α,β-unsaturated aldehydes, and 1,3,5-trioxanes. Dalton Transactions, 45 (27). pp. 11150-11161. doi:10.1039/c6dt02121b

Atwan, Zeenah, Wright, Jordan L., Leppard, Keith and Woodman, Andrew (2016) Promyelocytic leukemia protein isoform II inhibits infection by human adenovirus type 5 through effects on HSP70 and the interferon response. Journal of General Virology, 97 . pp. 1955-1967. doi:10.1099/jgv.0.000510

B

Badescu, George O., Marsh, Andrew, Smith, Timothy R., Thompson, Andrew J. and Napier, R. (Richard) (2016) Kinetic characterisation of a single chain antibody against the Hormone Abscisic Acid : comparison with its parental monoclonal. PLoS One, 11 (3). pp. 1-14. e0152148. doi:10.1371/journal.pone.0152148

Bailey, Andy M., Alberti, Fabrizio, Kilaru, Sreedhar, Collins, Catherine M., de Mattos-Shipley, Kate, Hartley, Amanda J., Hayes, Patrick, Griffin, Alison, Lazarus, Colin M., Cox, Russell J., Willis, Christine L., O’Dwyer, Karen, Spence, David W. and Foster, Gary D. (2016) Identification and manipulation of the pleuromutilin gene cluster from Clitopilus passeckerianus for increased rapid antibiotic production. Scientific Reports, 6 (1). doi:10.1038/srep25202

Bailey, Mark, Srivastava, Anjil, Conti, Lucio, Nelis, Stuart, Zhang, Cunjin, Florance, Hannah, Love, Andrew, Milner, Joel, Napier, R. (Richard), Grant, Murray R. and Sadanandom, Ari (2016) Stability of small ubiquitin-like modifier (SUMO) proteases OVERLY TOLERANT TO SALT1 and -2 modulates salicylic acid signalling and SUMO1/2 conjugation in Arabidopsis thaliana. Journal of Experimental Botany, 67 (1). pp. 353-363. doi:10.1093/jxb/erv468

Barnes, Christopher J., Burns, Caitlin A., van der Gast, Christopher J., McNamara, Niall P. and Bending, G. D. (2016) Spatio-temporal variation of core and satellite arbuscular mycorrhizal fungus communities in Miscanthus giganteus. Frontiers in Microbiology, 7 . 1278. doi:10.3389/fmicb.2016.01278

Barnes, Christopher J., van der Gast, Christopher J., Burns, Caitlin A., McNamara, Niall P. and Bending, G. D. (2016) Temporally variable geographical distance effects contribute to the assembly of root-associated fungal communities. Frontiers in Microbiology, 7 . pp. 1-13. 195. doi:10.3389/fmicb.2016.00195

Baroncelli, Riccardo, Amby, Daniel Buchvaldt, Zapparata, Antonio, Sarrocco, Sabrina, Vannacci, Giovanni, Le Floch, Gaétan, Harrison, Richard J., Holub, E. B., Sukno, Serenella A., Sreenivasaprasad, Surapareddy and Thon, Michael R. (2016) Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum. BMC Genomics, 17 (1). 555. doi:10.1186/s12864-016-2917-6

Barton, Kiah A., Schattat, Martin H., Jakob, Torsten, Hause, Gerd, Wilhelm, Christian, McKenna, Joseph F., Máthé, Csaba, Runions, John, Van Damme, Daniel and Mathur, Jaideep (2016) Epidermal pavement cells of Arabidopsis have chloroplasts. Plant Physiology, 171 (2). pp. 723-726. doi:10.1104/pp.16.00608

Bassel, George (2016) To grow or not to grow? Trends in Plant Science, 21 (6). pp. 498-505. doi:10.1016/j.tplants.2016.02.001

Bassel, George and Smith, Richard S. (2016) Quantifying morphogenesis in plants in 4D. Current Opinion in Plant Biology, 29 . pp. 87-94. doi:10.1016/j.pbi.2015.11.005

(2016) Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis. The Plant Cell, 28 (2). pp. 345-366. doi:10.1105/tpc.15.00910

(2016) Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nature Communications, 7 . 10165. doi:10.1038/ncomms10165

Bhandare, Amol M., Kapoor, K., Pilowsky, P. M. and Farnham, Melissa M. J. (2016) Seizure-induced sympathoexcitation is caused by activation of glutamatergic receptors in RVLM that also causes proarrhythmogenic changes mediated by PACAP and microglia in rats. Journal of Neuroscience, 36 (2). pp. 506-517.

Bhandare, Amol M., Kapoor, Komal, Farnham, Melissa M. J. and Pilowsky, Paul M. (2016) Microglia PACAP and glutamate : friends or foes in seizure-induced autonomic dysfunction and SUDEP? Respiratory Physiology & Neurobiology, 226 . pp. 39-50.

Bird, Alex D., Wall, Mark J. and Richardson, Magnus J. E. (2016) Bayesian inference of synaptic quantal parameters from correlated vesicle release. Frontiers in Computational Neuroscience, 10 . 116. doi:10.3389/fncom.2016.00116

Bjorness, T. E., Dale, Nicholas, Mettlach, G., Sonneborn, A., Sahin, B., Fienberg, A. A., Yanagisawa, M., Bibb, J. A. and Greene, R. W. (2016) An adenosine-mediated Glial-Neuronal circuit for homeostatic sleep. Journal of Neuroscience, 36 (13). pp. 3709-3721. doi:10.1523/JNEUROSCI.3906-15.2016

Bolivar, Juan H., Muñoz-García, Juan C., Castro-Dopico, Tomas, Dijkman, Patricia M., Stansfeld, Phillip J. and Watts, Anthony (2016) Interaction of lipids with the neurotensin receptor 1. Biochimica et Biophysica Acta (BBA) - Biomembranes, 1858 (6). pp. 1278-1287. doi:10.1016/j.bbamem.2016.02.032

Boltze, Johannes, Wagner, Daniel-Christoph, Henninger, Nils, Plesnila, Nikolaus and Ayata, Cenk (2016) Phase III preclinical trials in translational stroke research : community response on framework and guidelines. Translational Stroke Research, 7 (4). pp. 241-247. doi:10.1007/s12975-016-0474-6

Botta, Federico and Del Genio, Charo I. (2016) Finding network communities using modularity density. Journal of Statistical Mechanics : Theory and Experiment, 2016 (12). 123402. doi:10.1088/1742-5468/2016/12/123402

Brand, Samuel, Rock, Kat S. and Keeling, Matthew James (2016) The interaction between vector life history and short vector life in vector-borne disease transmission and control. PLoS Computational Biology, 12 (4). e1004837. doi:10.1371/journal.pcbi.1004837

Breen, Susan, Williams, Simon J., Winterberg, Britta, Kobe, Bostjan and Solomon, Peter S. (2016) Wheat PR-1 proteins are targeted by necrotrophic pathogen effector proteins. The Plant Journal, 88 (1). pp. 13-25. doi:10.1111/tpj.13228

Breeze, Emily, Dzimitrowicz, Natasha, Kriechbaumer, Verena, Brooks, Rhiannon, Botchway, Stanley W., Brady, Jacob P., Hawes, Chris, Dixon, Ann M., Schnell, Jason R., Fricker, Mark D. and Frigerio, Lorenzo (2016) A C-terminal amphipathic helix is necessary for the in-vivo tubule-shaping function of plant reticulon. Proceedings of the National Academy of Sciences of the United States of America, 113 (39). pp. 10902-10907. doi:10.1073/pnas.1605434113

Bridges, Rebecca G., Sohn, Sook-Young, Wright, Jordan L., Leppard, Keith and Hearing, Patrick (2016) The adenovirus E4-ORF3 protein stimulates SUMOylation of general transcription factor TFII-I to direct proteasomal degradation. mBio, 7 (1). e02184-15. doi:10.1128/mBio.02184-15

Brinkert, Katharina, De Causmaecker, Sven, Krieger-Liszkay, Anja, Fantuzzi, Andrea and Rutherford, A. William (2016) Bicarbonate-induced redox tuning in Photosystem II for regulation and protection. Proceedings of the National Academy of Sciences, 113 (43). pp. 12144-12149. doi:10.1073/pnas.1608862113

Brodel, Andreas K., Jaramillo, Alfonso and Isalan, Mark (2016) Engineering orthogonal dual transcription factors for multi-input synthetic promoters. Nature Communications, 7 . 13858 . doi:10.1038/ncomms13858

Brown, Thomas, Didelot, Xavier, Maio, Nicola De and Wilson, Daniel J. (2016) SimBac : simulation of whole bacterial genomes with homologous recombination. Microbial Genomics, 2 (1). doi:10.1099/mgen.0.000044

Bubendorfer, Sebastian, Krebes, Juliane, Yang, Ines, Hage, Elias, Schulz, Thomas F., Bahlawane, Christelle, Didelot, Xavier and Suerbaum, Sebastian (2016) Genome-wide analysis of chromosomal import patterns after natural transformation of Helicobacter pylori. Nature Communications, 7 . 11995. doi:10.1038/ncomms11995

Buckley, James, Kilbride, Elizabeth, Cevik, Volkan, Vicente, Joana G., Holub, E. B. and Mable, Barbara K. (2016) R-gene variation across Arabidopsis lyrata subspecies : effects of population structure, selection and mating system. BMC Evolutionary Biology, 16 (1). 93. doi:10.1186/s12862-016-0665-5

Burgess, Alexandra J., Retkute, Renata, Preston, Simon P., Jensen, Oliver E., Pound, Michael P., Pridmore, Tony P. and Murchie, Erik H. (2016) The 4-dimensional plant : effects of wind-induced canopy movement on light fluctuations and photosynthesis. Frontiers in Plant Science, 7 (1392). doi:10.3389/fpls.2016.01392

C

(2016) Understanding the transmission dynamics of Leishmania donovani to provide robust evidence for interventions to eliminate visceral leishmaniasis in Bihar, India. Parasites & Vectors, 9 (1). pp. 1-9. 25. doi:10.1186/s13071-016-1309-8

Carpenter, Byron, Nehmé, Rony, Warne, Tony, Leslie, Andrew G. W. and Tate, Christopher G. (2016) Structure of the adenosine A2A receptor bound to an engineered G protein. Nature, 536 (7614). pp. 104-107. doi:10.1038/nature18966

Carpenter, Byron and Tate, Christopher G. (2016) Engineering a minimal G protein to facilitate crystallisation of G protein-coupled receptors in their active conformation. Protein Engineering Design and Selection, 29 (12). pp. 583-594. doi:10.1093/protein/gzw049

Cavallaro, Massimo and Harris, Rosemary J. (2016) A framework for the direct evaluation of large deviations in non-Markovian processes. Journal of Physics A: Mathematical and Theoretical, 49 (47). 47LT02. doi:10.1088/1751-8113/49/47/47LT02

Chapouthier, Georges, Panti-May, Jesús A., Carvalho-Pereira, Ticiana S. A., Serrano, Soledad, Pedra, Gabriel G., Taylor, Josh, Pertile, Arsinoê C., Minter, Amanda, Airam, Vladimir, Carvalho, Mayara, Júnior, Nivison N., Rodrigues, Gorete, Reis, Mitermayer G., Ko, Albert I., Childs, James E., Begon, Mike and Costa, Federico (2016) A two-year ecological study of Norway rats (Rattus norvegicus) in a Brazilian urban slum. PLoS One, 11 (3). e0152511. doi:10.1371/journal.pone.0152511

Chen, Jing, Dick, Richard, Lin, Jih-Gaw and Gu, Ji-Dong (2016) Current advances in molecular methods for detection of nitrite-dependent anaerobic methane oxidizing bacteria in natural environments. Applied Microbiology and Biotechnology, 100 (23). pp. 9845-9860. doi:10.1007/s00253-016-7853-5

Cizmeci, Deniz, Dempster, Emma L., Champion, Olivia L., Wagley, Sariqa, Akman, Ozgur E., Prior, Joann L., Soyer, Orkun S., Mill, Jonathan and Titball, Richard W. (2016) Mapping epigenetic changes to the host cell genome induced by Burkholderia pseudomallei reveals pathogen-specific and pathogen-generic signatures of infection. Scientific Reports, 6 . 30861. doi:10.1038/srep30861

Clark, Corinna C. A., Crump, Ron E., KilBride, Amy L. and Green, Laura E. (2016) Farm membership of voluntary welfare schemes results in better compliance with animal welfare legislation in Great Britain. Animal Welfare, 25 (4). pp. 461-469. doi:10.7120/09627286.25.4.461

Cleary, David W., Bishop, Alistair H., Zhang, Lihong, Topp, Edward, Wellington, E. M. H., Gaze, William H. and Smalla, Kornelia (2016) Long-term antibiotic exposure in soil is associated with changes in microbial community structure and prevalence of class 1 integrons. FEMS Microbiology Ecology, 92 (10). fiw159. doi:10.1093/femsec/fiw159

Coincon, Mathieu, Uzdavinys, Povilas, Nji, Emmanuel, Dotson, David L., Winkelmann, Iven, Abdul-Hussein, Saba, Cameron, Alexander, Beckstein, Oliver and Drew, David (2016) Crystal structures reveal the molecular basis of ion translocation in sodium/proton antiporters. Nature Structural & Molecular Biology, 23 (3). pp. 248-255. doi:10.1038/nsmb.3164

Collier, Rosemary, Birch, Nicholas E., Hallier, Sonia, Walley, Peter Glen, Teakle, Graham R. and Label, Alain (2016) The potential for identifying and utilising sources of host plant resistance to the pests and pathogens of Brassica crops as a key component of future IPM strategies. Working Paper. IOBC-WPRS Bulletin. Working Group "Integrated Protection in Field Vegetables". Proceedings of the Meeting at Pflanzenschutzdienst Hamburg (Germany), 04 - 07 October, 2015, 118 .

Collier, Rosemary, Cross, Jerry V. and Xu, Xiangming (2016) Horticulture. In: Hester, R. E. and Harrison, R. M., (eds.) Agricultural Chemicals and the Environment : Issues and Potential Solutions : Edition 2. London: Royal Society of Chemistry. ISBN 9781782626909

Collier, Rosemary and Hommes, Martin (2016) Side effects of pesticide applications. Working Paper. IOBC-WPRS Bulletin. Working Group "Integrated Protection in Field Vegetables". Proceedings of the Meeting at Pflanzenschutzdienst Hamburg (Germany), 04 - 07 October, 2015, 118 .

Collier, Rosemary, Jukes, Andrew and Collins, Spencer (2016) Implementation of integrated pest Management by vegetable and salad growers in the UK. Working Paper. IOBC-WPRS Bulletin. Working Group "Integrated Protection in Field Vegetables". Proceedings of the Meeting at Pflanzenschutzdienst Hamburg (Germany), 04 - 07 October, 2015, 118 .

Collier, Rosemary, Jukes, Andrew, Daniel, Claudia and Hommes, Martin (2016) Ecological selectivity of pesticides and pesticide application methods. Working Paper. IOBC-WPRS Bulletin. Working Group "Integrated Protection in Field Vegetables". Proceedings of the Meeting at Pflanzenschutzdienst Hamburg (Germany), 04 - 07 October, 2015, 118 .

Collins, Caitlin and Didelot, Xavier (2016) Reconstructing the ancestral relationships between bacterial pathogen genomes. In: Nordenfelt, P. and Collin, M., (eds.) Bacterial Pathogenesis. Springer, pp. 109-137. ISBN 9781493966714

Cooper, Selin, Huntley, S. J. (Selene J.), Crump, Ron E., Lovatt, Fiona and Green, Laura E. (2016) A cross-sectional study of 329 farms in England to identify risk factors for ovine clinical mastitis. Preventive Veterinary Medicine, 125 . pp. 89-98. doi:10.1016/j.prevetmed.2016.01.012

Couto, Daniel, Niebergall, Roda, Liang, Xiangxiu, Bücherl, Christoph A., Sklenar, Jan, Macho, Alberto P., Ntoukakis, Vardis, Derbyshire, Paul, Altenbach, Denise, Maclean, Dan, Robatzek, Silke, Uhrig, Joachim, Menke, Frank, Zhou, Jian-Min and Zipfel, Cyril (2016) The Arabidopsis protein phosphatase PP2C38 negatively regulates the central immune kinase BIK1. PLoS Pathogens, 12 (8). e1005811. doi:10.1371/journal.ppat.1005811

Crow, Allister, Matsuda, Yuji, Arata, Hiroyuki and Oubrie, Arthur (2016) Structure of the membrane-intrinsic nitric oxide reductase from roseobacter denitrificans. Biochemistry, 55 (23). pp. 3198-3203. doi:10.1021/acs.biochem.6b00332

Cruz, João C. S., Maffioli, Sonia I., Bernasconi, Alice, Brunati, Cristina, Gaspari, Eleonora, Sosio, Margherita, Wellington, E. M. H. and Donadio, Stefano (2016) Allocyclinones, hyperchlorinated angucyclinones from Actinoallomurus. The Journal of Antibiotics . doi:10.1038/ja.2016.62

Cui, Li-li, Kinnunen, Tuure, Boltze, Johannes, Nystedt, Johanna and Jolkkonen, Jukka (2016) Clumping and viability of bone marrow derived mesenchymal stromal cells under different preparation procedures : a flow cytometry-based in vitro study. Stem Cells International, 2016 . pp. 1-8. doi:10.1155/2016/1764938

Cuthbertson, Leah, Rogers, Geraint B., Walker, Alan W., Oliver, Anna, Green, Laura E., Daniels, Thomas W. V., Carroll, Mary P., Parkhill, Julian, Bruce, Kenneth D. and van der Gast, Christopher J. (2016) Respiratory microbiota resistance and resilience to pulmonary exacerbation and subsequent antimicrobial intervention. The ISME Journal, 10 (5). pp. 1081-1091. doi:10.1038/ismej.2015.198

D

DaSilva, Luis L., Wall, Mark J., Almeida, Luciana P. de , Wauters, Sandrine, Januario, Yunan C., Müller, Jürgen and Corrêa, Sônia A. L. (2016) Arc controls AMPAR endocytosis through a direct interaction with clathrin-adaptor protein 2. eNeuro, 3 (3). 0144-15.2016. doi:10.1523/ENEURO.0144-15.2016

Daniel, Claudia, Collier, Rosemary, Thomas, Jane and Hommes, Martin (2016) Effects of landscape and region on pests and pathogens in Brassica vegetables and oilseed rape. Working Paper. IOBC-WPRS Bulletin. Working Group "Integrated Protection in Field Vegetables". Proceedings of the Meeting at Pflanzenschutzdienst Hamburg (Germany), 04 - 07 October, 2015, 118 .

Das, Vidya Nand Ravi, Pandey, Ravindra Nath, Siddiqui, Niyamat Ali, Chapman, Lloyd A. C., Kumar, Vijay, Pandey, Krishna, Matlashewski, Greg and Das, Pradeep (2016) Longitudinal study of transmission in households with visceral leishmaniasis, asymptomatic infections and PKDL in highly endemic villages in Bihar, India. PLoS Neglected Tropical Diseases, 10 (12). e0005196. doi:10.1371/journal.pntd.0005196

De Silva, Dilrini, Peters, Joanna, Cole, Kevin, Cole, Michelle J, Cresswell, Fiona, Dean, Gillian, Dave, Jayshree, Thomas, Daniel Rh, Foster, Kirsty, Waldram, Alison, Wilson, Daniel J, Didelot, Xavier, Grad, Yonatan H, Crook, Derrick W, Peto, Tim E A, Walker, A Sarah, Paul, John and Eyre, David W (2016) Whole-genome sequencing to determine transmission of Neisseria gonorrhoeae : an observational study. The Lancet Infectious Diseases, 16 (11). pp. 1295-1303. doi:10.1016/S1473-3099(16)30157-8

Del Genio, Charo I., Gomez-Gardenes, J., Bonamassa, I. and Boccaletti, S. (2016) Synchronization in networks with multiple interaction layers. Science Advances, 2 (11). e1601679. doi:10.1126/sciadv.1601679

Deol, Arminder, Webster, Joanne P., Walker, Martin, Basáñez, Maria-Gloria, Hollingsworth, T. Déirdre, Fleming, Fiona M., Montresor, Antonio and French, Michael D. (2016) Development and evaluation of a Markov model to predict changes in schistosomiasis prevalence in response to praziquantel treatment : a case study of Schistosoma mansoni in Uganda and Mali. Parasites & Vectors, 9 (1). 543. doi:10.1186/s13071-016-1824-7

Di Fonzo, Martina M. I., Possingham, Hugh P., Probert, William J. M., Bennett, Joseph R., Joseph, Liana N., Tulloch, Ayesha I. T., O'Connor, Shaun, Densem, Jodie and Maloney, Richard F. (2016) Evaluating trade-offs between target persistence levels and numbers of species conserved. Conservation Letters, 9 (1). pp. 51-57. doi:10.1111/conl.12179

Dickins, Alan, Clark, Corinna C. A., Kaler, Jasmeet, Ferguson, Eamonn, O'Kane, Holly and Green, Laura E. (2016) Factors associated with the presence and prevalence of contagious ovine digital dermatitis : a 2013 study of 1136 random English sheep flocks. Preventive Veterinary Medicine, 130 . pp. 86-93. doi:10.1016/j.prevetmed.2016.06.009

Didelot, Xavier (2016) Heroic sacrifice or tragic mistake? Revisiting the Eyam plague, 350 years on. Significance, 13 (5). pp. 20-25. doi:10.1111/j.1740-9713.2016.00961.x

Didelot, Xavier, Dordel, Janina, Whittles, Lilith K., Collins, Caitlin, Bilek, Nicole, Bishop, Cynthia J., White, Peter J., Aanensen, David M., Parkhill, Julian, Bentley, Stephen D., Spratt, Brian G. and Harris, Simon R. (2016) Genomic analysis and comparison of two Gonorrhea outbreaks. mBio, 7 (3). doi:10.1128/mBio.00525-16

Didelot, Xavier, Walker, A. Sarah, Peto, Tim E., Crook, Derrick W. and Wilson, Daniel J. (2016) Within-host evolution of bacterial pathogens. Nature Reviews Microbiology, 14 (3). pp. 150-162. doi:10.1038/nrmicro.2015.13

Diehl, Rita, Ferrara, Fabienne, Müller, Claudia, Dreyer, Antje Y., McLeod, Damian D., Fricke, Stephan and Boltze, Johannes (2016) Immunosuppression for in vivo research : state-of-the-art protocols and experimental approaches. Cellular & Molecular Immunology, 14 (2). pp. 146-179. doi:10.1038/cmi.2016.39

Dowson, Christopher G. and O’Reilly, Steven (2016) DNA methylation in fibrosis. European Journal of Cell Biology, 95 (9). pp. 323-330. doi:10.1016/j.ejcb.2016.06.003

de Mattos-Shipley, K. M. J., Ford, K. L., Alberti, Fabrizio, Banks, A. M., Bailey, A. M. and Foster, G. D. (2016) The good, the bad and the tasty : the many roles of mushrooms. Studies in Mycology, 85 . pp. 125-157. doi:10.1016/j.simyco.2016.11.002

de Wolf, Elizabeth, van de Wiel, Joseph, Cook, Jonathan and Dale, Nicholas (2016) Altered CO2 sensitivity of connexin26 mutant hemichannels in vitro. Physiological Reports, 4 (22). e13038.

E

Eldholm, Vegard, Rieux, Adrien, Monteserin, Johana, Lopez, Julia Montana, Palmero, Domingo, Lopez, Beatriz, Ritacco, Viviana, Didelot, Xavier and Balloux, Francois (2016) Impact of HIV co-infection on the evolution and transmission of multidrug-resistant tuberculosis. eLife, 5 . doi:10.7554/eLife.16644

Emmanuel de los Santos, L. C., Meyerowitz, Joseph T., Mayo, Stephen L. and Murray, Richard M. (2016) Engineering transcriptional regulator effector specificity using computational design and in vitrorapid prototyping : developing a vanillin sensor. ACS Synthetic Biology, 5 (4). pp. 287-295. doi:10.1021/acssynbio.5b00090

Emukule, Gideon O. , Mott, Joshua A., Spreeuwenberg, Peter, Viboud, Cecile, Commanday, Alexander, Muthoka, Philip, Munywoki, Patrick K., Nokes, D. James, Velden, Koos van der and Paget, John W. (2016) Influenza activity in Kenya, 2007-2013 : timing, association with climatic factors, and implications for vaccination campaigns. Influenza and Other Respiratory Viruses, 10 (5). pp. 375-385. doi:10.1111/irv.12393

Eyice, Özge and Schäfer, Hendrik (2016) Culture-dependent and culture-independent methods reveal diverse methylotrophic communities in terrestrial environments. Archives of Microbiology, 198 (1). pp. 17-26. doi:10.1007/s00203-015-1160-x

F

Farrant, Gregory K., Doré, Hugo, Cornejo-Castillo, Francisco M., Partensky, Frédéric, Ratin, Morgane, Ostrowski, Martin, Pitt, Frances D., Wincker, Patrick, Scanlan, David J. , Iudicone, Daniele, Acinas, Silvia G. and Garczarek, Laurence (2016) Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 113 (24). E3365-E3374. doi:10.1073/pnas.1524865113

Feng, Song, Ollivier, Julien F. and Soyer, Orkun S. (2016) Enzyme sequestration as a tuning point in controlling response dynamics of signalling networks. PLoS Computational Biology, 12 (5). e1004918. doi:10.1371/journal.pcbi.1004918

Feng, Song, Sáez, Meritxell, Wiuf, Carsten, Feliu, Elisenda and Soyer, Orkun S. (2016) Core signalling motif displaying multistability through multi-state enzymes. Journal of The Royal Society Interface, 13 (123). 20160524. doi:10.1098/rsif.2016.0524

Ferrández-Ayela, Almudena , Sánchez-García, Ana Belén, Martinez-Andejar, Cristina, Kevei, Zoltan, Gifford, Miriam L., Thompson, Andrew J., Pérez-Alfocea, Francisco and Pérez-Pérez, José Manuel (2016) Identification of novel stress-responsive biomarkers from gene expression datasets in tomato roots. Functional Plant Biology, 43 (8). pp. 783-796. doi:10.1071/FP15385

Ferrández-Ayela, Almudena , Sánchez-García, Ana Belén, Martínez-Andújar, Cristina, Gifford, Miriam L., Thompson, Andrew J., Pérez-Alfocea, Francisco and Pérez-Pérez, José Manuel (2016) Identification of novel stress-responsive biomarkers from gene expression datasets in tomato roots. Functional Plant Biology, 43 (8). pp. 783-796. doi:10.1071/FP15385

Finch-Savage, William E. and Bassel, George (2016) Seed vigour and crop establishment : extending performance beyond adaptation. Journal of Experimental Botany, 67 (3). pp. 567-591. doi:10.1093/jxb/erv490

Footitt, Steven, Palleschi, Simonetta, Fazio, Eugenio, Palomba, Raffaele, Finch-Savage, William E. and Silvestroni, Leopoldo (2016) Ultra-weak photon emission from the seed coat in response to temperature and humidity - a potential mechanism for environmental signal transduction in the soil seed bank. Photochemistry and Photobiology, 92 (5). pp. 678-687. doi:10.1111/php.12616

Frenguelli, Bruno G. and Wall, Mark J. (2016) Combined electrophysiological and biosensor approaches to study purinergic regulation of epileptiform activity in cortical tissue. Journal of Neuroscience Methods, 260 . pp. 202-214. doi:10.1016/j.jneumeth.2015.09.011

Fullam, Elizabeth, Prokes, Ivan, Fütterer, Klaus and Besra, Gurdyal S. (2016) Structural and functional analysis of the solute-binding protein UspC from Mycobacterium tuberculosis that is specific for amino sugars. Open Biology (6). doi:10.1098/rsob.160105

G

Garcia-Ojalvo, Jordi, Khalil, Ahmad S. and McCarthy, John E. G. (2016) Editorial : Biological insights from synthetic biology. Integrative Biology, 8 (4). pp. 380-382. doi:10.1039/c6ib90013e

Golicz, Agnieszka A., Bayer, Philipp E. , Barker, Guy C., Edger, Patrick P., Kim, Hye Ran, Martinez, Paula A., Chan, Chon Kit Kenneth, Severn-Ellis, Anita , McCombie, Richard , Parkin, Isobel A. P., Paterson, Andrew H., Pires, Chris , Sharpe, Andrew G., Tang, Haibao , Teakle, Graham R., Town, Christopher D., Batley, Jacqueline and Edwards, David (2016) The pangenome of an agronomically important crop plant Brassica oleracea. Nature Communications, 17 . 13390. doi:10.1038/NCOMMS13390

Gonçalves, Bronner P., Gupta, Sunetra and Penman, Bridget S. (2016) Sickle haemoglobin, haemoglobin C and malaria mortality feedbacks. Malaria Journal, 15 (1). pp. 1-7. 26. doi:10.1186/s12936-015-1077-5

Gorsich, Erin E., Luis, Angela D., Buhnerkempe, Michael G., Grear, Daniel A., Portacci, Katie, Miller, Ryan S. and Webb, Colleen T. (2016) Mapping U.S. cattle shipment networks : spatial and temporal patterns of trade communities from 2009 to 2011. Preventive Veterinary Medicine, 134 . pp. 82-91. doi:10.1016/j.prevetmed.2016.09.023

Gosling, Paul, Jones, Julie and Bending, G. D. (2016) Evidence for functional redundancy in arbuscular mycorrhizal fungi and implications for agroecosystem management. Mycorrhiza, 26 (1). pp. 77-83. doi:10.1007/s00572-015-0651-6

Granato, Elisa T., Harrison, Freya, Kümmerli, Rolf and Ross-Gillespie, Adin (2016) Do bacterial “virulence factors” always increase virulence? A meta-analysis of pyoverdine production in pseudomonas aeruginosa as a test case. Frontiers in Microbiology, 7 . doi:10.3389/fmicb.2016.01952

Granato, Elisa T., Harrison, Freya, Kümmerli, Rolf and Ross-Gillespie, Adin (2016) When is a bacterial "virulence factor" really virulent? Working Paper. bioRxiv . (Unpublished)

Grant, Claire, Smith, Edward M. and Green, Laura E. (2016) A longitudinal study of factors associated with acute and chronic mastitis and their impact on lamb growth rate in 10 suckler sheep flocks in Great Britain. Preventive Veterinary Medicine, 127 . pp. 27-36. doi:10.1016/j.prevetmed.2016.03.002

Großkopf, Tobias, Consuegra, Jessika, Gaffé, Joël, Willison, John C., Lenski, Richard E., Soyer, Orkun S. and Schneider, Dominique (2016) Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment. BMC Evolutionary Biology, 16 (1). doi:10.1186/s12862-016-0733-x

Großkopf, Tobias and Soyer, Orkun S. (2016) Microbial diversity arising from thermodynamic constraints. The ISME Journal, 10 . pp. 2725-2733. doi:10.1038/ismej.2016.49

Großkopf, Tobias, Zenobi, Simone, Alston, Mark, Folkes, Leighton, Swarbreck, David and Soyer, Orkun S. (2016) A stable genetic polymorphism underpinning microbial syntrophy. The ISME Journal, 10 . pp. 2844-2853. doi:10.1038/ismej.2016.80

Gu, Yinghong, Li, Huanyu, Dong, Haohao, Zeng, Yi, Zhang, Zhengyu, Paterson, Neil G., Stansfeld, Phillip J., Wang, Zhongshan, Zhang, Yizheng, Wang, Wenjian and Dong, Changjiang (2016) Structural basis of outer membrane protein insertion by the BAM complex. Nature, 531 (7592). pp. 64-69. doi:10.1038/nature17199

Guardiani, Carlo, Rodger, P. Mark, Fedorenko, Olena A., Roberts, Stephen K. and Khovanov, Igor A. (2016) Sodium binding sites and permeation mechanism in the NaChBac channel : a molecular dynamics study. Journal of Chemical Theory and Computation, 13 (3). pp. 1389-1400. doi:10.1021/acs.jctc.6b01035

Gudeta, Dereje Dadi, Bortolaia, Valeria, Amos, Gregory C. A., Wellington, E. M. H., Brandt, Kristian K., Poirel, Laurent, Nielsen, Jesper Boye, Westh, Henrik and Guardabassi, Luca (2016) The soil microbiota harbors a diversity of Carbapenem-Hydrolyzing ß-Lactamases of potential clinical relevance. Antimicrobial Agents and Chemotherapy, 60 (1). pp. 151-160. doi:10.1128/AAC.01424-15

Gupta, Shabarni, Manubhai, K. P., Kulkarni, Vishwesh V. and Srivastava, Sanjeeva (2016) An overview of innovations and industrial solutions in protein microarray technology. Proteomics, 16 (8). pp. 1297-1308. doi:10.1002/pmic.201500429

H

Hackenberg, Dieter, McKain, Michael R., Lee, Soon Goo, Roy Choudhury, Swarup, McCann, Tyler, Schreier, Spencer, Harkess, Alex, Pires, J. Chris, Wong, Gane Ka-Shu, Jez, Joseph M., Kellogg, Elizabeth A. and Pandey, Sona (2016) Gα and regulator of G-protein signaling (RGS) protein pairs maintain functional compatibility and conserved interaction interfaces throughout evolution despite frequent loss of RGS proteins in plants. New Phytologist, 216 (2). pp. 562-575. doi:10.1111/nph.14180

Hackenberg, Dieter, Perroud, Pierre-François, Quatrano, Ralph S. and Pandey, Sona (2016) Sporophyte formation and life cycle completion in moss requires heterotrimeric G-proteins. Plant Physiology, 172 (2). 01088.2016. doi:10.1104/pp.16.01088

Hacker, Kathryn P., Minter, Amanda, Begon, Mike, Diggle, Peter J., Serrano, Soledad, Reis, Mitermayer G., Childs, James E., Ko, Albert I. and Costa, Federico (2016) A comparative assessment of track plates to quantify fine scale variations in the relative abundance of Norway rats in urban slums. Urban Ecosystems, 19 (2). pp. 561-575. doi:10.1007/s11252-015-0519-8

Harrison, Freya and Diggle, Stephen P. (2016) An ex vivo lung model to study bronchioles infected with Pseudomonas aeruginosa biofilms. Working Paper. bioRxiv . (Unpublished)

Harrison, Freya and Diggle, Stephen P. (2016) An ex vivo lung model to study bronchioles infected with Pseudomonas aeruginosa biofilms. Microbiology, 162 . pp. 1755-1760. doi:10.1099/mic.0.000352

Harvey, David J., Scarff, Charlotte A., Edgeworth, Matthew, Pagel, Kevin, Thalassinos, Konstantinos, Struwe, Weston B., Crispin, Max and Scrivens, James H. (2016) Travelling-wave ion mobility mass spectrometry and negative ion fragmentation of hybrid and complex N -glycans. Journal of mass spectrometry, 51 (11). pp. 1064-1079. doi:10.1002/jms.3828

Hatherell, Hollie-Ann, Tang, Patrick, Pollock, Sue L., Didelot, Xavier, Johnston, James C., Gardy, Jennifer L., Crisan, Anamaria and Colijn, Caroline (2016) Declaring a tuberculosis outbreak over with genomic epidemiology. Microbial Genomics, 2 (5). doi:10.1099/mgen.0.000060

Hebenstreit, Daniel (2016) Funding : would Mendel have won it? Nature, 536 (7615). p. 148. doi:10.1038/536148c

Helliwell, Katherine Emma, Lawrence, Andrew David, Holzer, Andre, Kudahl, Johan, Sasso, Severin, Kräutler, Bernhard , Scanlan, David J. , Warren , Martin James and Smith, Alison Gail (2016) Cyanobacteria and eukaryotic algae use different chemical variants of vitamin B12. Current Biology, 26 (8). pp. 999-1008. doi:10.1016/j.cub.2016.02.041

Henrichs, Brian, Oosthuizen, Marinda C., Troskie, Milana, Gorsich, Erin E., Gondhalekar, Carmen, Beechler, Brianna R., Ezenwa, Vanessa O., Jolles, Anna E. and Fenton, Andy (2016) Within guild co-infections influence parasite community membership : a longitudinal study in African Buffalo. Journal of Animal Ecology, 85 (4). pp. 1025-1034. doi:10.1111/1365-2656.12535

Hilbrant, Maarten, Horn, Thorsten, Koelzer, Stefan and Panfilio, Kristen A. (2016) The beetle amnion and serosa functionally interact as apposed epithelia. eLife, 5 . e13834. doi:10.7554/eLife.13834

Horn, Thorsten and Panfilio, Kristen A. (2016) Novel functions for Dorsocrossin epithelial morphogenesis in the beetle Tribolium castaneum. Development , 143 (16). pp. 3002-3011. doi:10.1242/dev.133280

Hossain, Mohammad R., Bassel, George, Pritchard, Jeremy, Sharma, Garima P. and Ford-Lloyd, Brian V. (2016) Trait specific expression profiling of salt stress responsive genes in diverse rice genotypes as determined by modified significance analysis of microarrays. Frontiers in Plant Science, 7 . 567. doi:10.3389/fpls.2016.00567

Huckstepp, Robert T. R., Henderson, Lauren E., Cardoza, Kathryn P. and Feldman, Jack L. (2016) Interactions between respiratory oscillators in adult rats. eLife, 5 . e14203. doi:10.7554/eLife.14203

Huckstepp, Robert T. R., Llaudet, Enrique and Gourine, Alexander V. (2016) CO2-induced ATP-dependent release of acetylcholine on the ventral surface of the medulla oblongata. PLoS One, 11 (12). e0167861. doi:10.1371/journal.pone.0167861

I

Irvine, Michael Alastair, Bull, James C. (James Christopher) and Keeling, Matthew James (2016) Disease transmission promotes evolution of host spatial patterns. Journal of The Royal Society Interface, 13 (122). 20160463. doi:10.1098/rsif.2016.0463

Irvine, Michael Alastair, Jackson, E. L., Kenyon, Emma J., Cook, Kevan J., Keeling, Matthew James and Bull, J. C. (2016) Fractal measures of spatial pattern as a heuristic for return rate in vegetative systems. Royal Society Open Science , 3 (3). pp. 1-11. 150519. doi:10.1098/rsos.150519

Irvine, Michael Alastair, Njenga, Sammy M., Gunawardena, Shamini, Njeri Wamae, Claire, Cano, Jorge, Brooker, Simon J. and Hollingsworth, T. Déirdre (2016) Understanding the relationship between prevalence of microfilariae and antigenaemia using a model of lymphatic filariasis infection. Transactions of the Royal Society of Tropical Medicine and Hygiene, 110 (2). pp. 118-124. doi:10.1093/trstmh/trv096

J

Jacomin, Anne-Claire, Fauvarque, Marie-Odile and Taillebourg, Emmanuel (2016) A functional endosomal pathway is necessary for lysosome biogenesis in Drosophila. BMC Cell Biology, 17 (1). doi:10.1186/s12860-016-0115-7

Jacomin, Anne-Claire and Nezis, Ioannis P. (2016) Using fluorescent reporters to monitor autophagy in the female germline cells in Drosophila melanogaster. In: Oogenesis : Methods and Protocols. Springer, pp. 69-78. ISBN 9781493937936

Jacomin, Anne-Claire, Samavedam, Siva, Promponas, Vasilis and Nezis, Ioannis P. (2016) iLIR database : a web resource for LIR motif-containing proteins in eukaryotes. Autophagy, 12 (10). pp. 1945-1953. doi:10.1080/15548627.2016.1207016

Jameson, Eleanor, Doxey, Andrew C., Airs, Ruth, Purdy, Kevin J., Murrell, J. C. (J. Colin) and Chen, Yin (2016) Metagenomic data-mining reveals contrasting microbial populations responsible for trimethylamine formation in human gut and marine ecosystems. Microbial Genomics, 2 (9). doi:10.1099/mgen.0.000080

Janzén, David, Bergenholm, Linnéa, Jirstrand, Mats, Parkinson, Joanna, Yates, James, Evans, Neil D. and Chappell, Michael J. (2016) Parameter identifiability of fundamental pharmacodynamic models. Frontiers in Physiology, 7 . 590. doi:10.3389/fphys.2016.00590

Jochimsen, Thies H., Zeisig, Vilia, Schulz, Jessica, Werner, Peter, Patt, Marianne, Patt, Jörg, Dreyer, Antje Y., Boltze, Johannes, Barthel, Henryk, Sabri, Osama and Sattler, Bernhard (2016) Fully automated calculation of image-derived input function in simultaneous PET/MRI in a sheep model. EJNMMI Physics, 3 (1). 2. doi:10.1186/s40658-016-0139-2

Jolkkonen, Jukka, Mendez-Otero, Rosalia, de Freitas, Gabriel Rodriguez, Boltze, Johannes and Rosado-de-Castro, Paulo Henrique (2016) The current state of cell therapies for cerebrovascular diseases. Stem Cells International, 2016 . pp. 1-2. 5215824. doi:10.1155/2016/5215824

Joseph, Sandeep J., Cox, Daniel, Wolff, Bernard, Morrison, Shatavia S., Kozak-Muiznieks, Natalia A., Frace, Michael, Didelot, Xavier, Castillo-Ramirez, Santiago, Winchell, Jonas, Read, Timothy D. and Dean, Deborah (2016) Dynamics of genome change among Legionella species. Scientific Reports, 6 (1). 33442. doi:10.1038/srep33442

Joseph, Sandeep J., Marti, Hanna, Didelot, Xavier, Read, Timothy D. and Dean, Deborah (2016) Tetracycline selective pressure and homologous recombination shape the evolution of Chlamydia suis : a recently identified zoonotic pathogen. Genome Biology and Evolution, 8 (8). pp. 2613-2623. doi:10.1093/gbe/evw182

K

Kaner, Rebecca A., Allison, Simon A., Faulkner, Alan D., Simpson, Daniel H., Waterfield, Nicholas R., Phillips, Roger M., Roper, David I., Shepherd, Samantha L. and Scott, Peter (2016) Anticancer metallohelices : nanomolar potency and high selectivity. Chemical Science, 7 (2). pp. 951-958. doi:10.1039/c5sc03677a

Kang, Yan, Pitto-Barry, Anaïs, Rolph, Marianne S., Hua, Zan, Hands-Portman, Ian, Kirby, Nigel and O’Reilly, Rachel K. (2016) Use of complementary nucleobase-containing synthetic polymers to prepare complex self-assembled morphologies in water. Polymer Chemistry, 7 . pp. 2836-2846. doi:10.1039/c6py00263c

Kapoor, Komal, Bhandare, Amol M., Farnham, Melissa M. J. and Pilowsky, Paul M. (2016) Alerted microglia and the sympathetic nervous system : a novel form of microglia in the development of hypertension. Respiratory Physiology & Neurobiology, 226 . pp. 51-62.

Kapoor, Komal, Bhandare, Amol M., Mohammed, Suja, Farnham, Melissa M.J. and Pilowsky, Paul M. (2016) Microglial number is related to the number of tyrosine hydroxylase neurons in SHR and normotensive rats. Autonomic Neuroscience, 198 . pp. 10-18.

Kapoor, Komal, Bhandare, Amol M., Nedoboy, Polina E., Mohammed, Suja, Farnham, Melissa M. J. and Pilowsky, Paul M. (2016) Dynamic changes in the relationship of microglia to cardiovascular neurons in response to increases and decreases in blood pressure. Neuroscience, 329 . pp. 12-29.

Karikari, Thomas K., Cobham, Ansa E. and Ndams, Iliya S. (2016) Building sustainable neuroscience capacity in Africa : the role of non-profit organisations. Metabolic Brain Disease, 31 (1). pp. 3-9. doi:10.1007/s11011-015-9687-8

Karikari, Thomas K., Turner, Alexandra, Stass, Robert, Lee, Leonie C.Y., Wilson, Bethany, Nagel, David A., Hill, Eric J. and Moffat, Kevin G. (2016) Expression and purification of tau protein and its frontotemporal dementia variants using a cleavable histidine tag. Protein Expression and Purification, 130 . pp. 44-54. doi:10.1016/j.pep.2016.09.009

Kaufmann, Timothy J., Harrison, Paul Michael, Richardson, Magnus J. E., Pinheiro, Teresa J. T. and Wall, Mark J. (2016) Intracellular soluble α-synuclein oligomers reduce pyramidal cell excitability. The Journal of Physiology, 594 (10). 2751-2772 . doi:10.1113/JP271968

Kiti, Moses C., Tizzoni, Michele, Kinyanjui, Timothy M., Koech, Dorothy C., Munywoki, Patrick K., Meriac, Milosch, Cappa, Luca, Panisson, André, Barrat, Alain, Cattuto, Ciro and Nokes, D. James (2016) Quantifying social contacts in a household setting of rural Kenya using wearable proximity sensors. EPJ Data Science, 5 (1). doi:10.1140/epjds/s13688-016-0084-2

(2016) Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy, 12 (1). pp. 1-222. doi:10.1080/15548627.2015.1100356

Knight, Anthony, Hemmings, Jennifer L., Winfield, Ian J., Leuenberger, Michele, Frattini, Eugenia, Frenguelli, Bruno G., Dowell, Simon J., Lochner, Martin and Ladds, Graham (2016) Discovery of novel adenosine receptor agonists that exhibit subtype selectivity. Journal of Medicinal Chemistry, 59 (3). pp. 947-964. doi:10.1021/acs.jmedchem.5b01402

Kowalczyk, Agnieszka, Price, Oliver R., van der Gast, Christopher J., Finnegan, Christopher J., van Egmond, Roger A., Schäfer, Hendrik and Bending, G. D. (2016) Spatial and temporal variability in the potential of river water biofilms to degrade p-nitrophenol. Chemosphere, 164 . pp. 355-362. doi:10.1016/j.chemosphere.2016.08.095

Kraft, Indra, Schreiber, Jan, Cafiero, Riccardo, Metere, Riccardo, Schaadt, Gesa, Brauer, Jens, Neef, Nicole E., Müller, Bent, Kirsten, Holger, Wilcke, Arndt, Boltze, Johannes, Friederici, Angela D. and Skeide, Michael A. (2016) Predicting early signs of dyslexia at a preliterate age by combining behavioral assessment with structural MRI. NeuroImage, 143 . pp. 378-386. doi:10.1016/j.neuroimage.2016.09.004

Kushwaha, Manish, Rostain, William, Prakash, Satya, Duncan, John and Jaramillo, Alfonso (2016) Using RNA as molecular code for programming cellular function. ACS Synthetic Biology, 5 (8). pp. 795-809. doi:10.1021/acssynbio.5b00297

L

Lafuerz, Luis F., Dyson, Louise, Edmonds, Bruce and McKane, Alan J. (2016) Simplification and analysis of a model of social interaction in voting. Physical Journal B: Condensed Matter and Complex Systems, 89 (7). 159.

Lafuerza, Luis F., Dyson, Louise, Edmonds, Bruce and McKane, Alan J. (2016) Staged models for interdisciplinary research. PLoS One, 11 (6). e0157261. doi:10.1371/journal.pone.0157261

Lake, David, Corrêa, Sônia A. L. and Müller, Jürgen (2016) Negative feedback regulation of the ERK1/2 MAPK pathway. Cellular and molecular life sciences : CMLS, 73 (23). 4397. doi:10.1007/s00018-016-2297-8

Lalo, Ulyana, Palygin, Oleg, Verkhratsky, A., Grant, S. G. N. and Pankratov, Yuriy (2016) ATP from synaptic terminals and astrocytes regulates NMDA receptors and synaptic plasticity through PSD-95 multi-protein complex. Scientific Reports, 6 . 33609. doi:10.1038/srep33609

Lareen, Andrew, Burton, Frances and Schäfer, Patrick (2016) Plant root-microbe communication in shaping root microbiomes. Plant Molecular Biology, 90 (6). pp. 575-587. doi:10.1007/s11103-015-0417-8

Latham, Jonathan, Henry, Jean-Marc, Sharif, Humera H., Menon, Binuraj R. K., Shepherd, Sarah A., Greaney, Michael F. and Micklefield, Jason (2016) Integrated catalysis opens new arylation pathways via regiodivergent enzymatic C–H activation. Nature Communications, 7 . 11873. doi:10.1038/ncomms11873

Lehmann, Katja, Bell, Thomas, Bowes, Michael J., Amos, Gregory C. A., Gaze, William H., Wellington, E. M. H. and Singer, Andrew C. (2016) Trace levels of sewage effluent are sufficient to increase class 1 integron prevalence in freshwater biofilms without changing the core community. Water Research, 106 . pp. 163-170. doi:10.1016/j.watres.2016.09.035

Li, L., Shi, Z., Zhu, H., Hong, W., Xie, Fengwei and Sun, K. (2016) Adsorption of azo dyes from aqueous solution by the hybrid MOFs/GO. Water Science and Technology, 73 (7). pp. 1728-1737. doi:10.2166/wst.2016.009

Lidbury, Ian, Kröber, Eileen, Zhang, Zhidong, Zhu, Yijun , Murrell, J. C. (J. Colin), Chen, Yin and Schäfer, Hendrik (2016) A mechanism for bacterial transformation of dimethylsulfide to dimethylsulfoxide : a missing link in the marine organic sulfur cycle. Environmental Microbiology, 18 . pp. 2754-2766. doi:10.1111/1462-2920.13354

Lidbury, Ian, Murphy, Andrew, Scanlan, David J., Bending, G. D., Jones, Alexandra M., Moore, Jonathan D., Goodall, Amanda, Hammond, John P. and Wellington, E. M. H. (2016) Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria. Environmental Microbiology, 18 (10). pp. 3535-3549. doi:10.1111/1462-2920.13390

Lopez, David, Amira, Maroua Ben, Brown, Daniel, Muries, Beatriz, Brunel-Michac, Nicole, Bourgerie, Sylvain, Porcheron, Benoit, Lemoine, Remi, Chrestin, Hervé, Mollison, Ewan, Di Cola, Alessandra, Frigerio, Lorenzo, Julien, Jean-Louis, Gousset-Dupont, Aurélie, Fumanal, Boris, Label, Philippe, Pujade-Renaud, Valérie, Auguin, Daniel and Venisse, Jean-Stéphane (2016) The Hevea brasiliensis XIP aquaporin subfamily : genomic, structural and functional characterizations with relevance to intensive latex harvesting. Plant Molecular Biology, 91 (4). pp. 375-396. doi:10.1007/s11103-016-0462-y

Lörinczi, Eva, Helliwell, Matthew, Finch, Alina, Stansfeld, Phillip J., Davies, Noel W., Mahaut-Smith, Martyn, Muskett, Frederick W. and Mitcheson, John S. (2016) Calmodulin regulates human ether à Go-Go 1 (hEAG1) potassium channels through interactions of the eag domain with the cyclic nucleotide binding homology domain. Journal of Biological Chemistry, 291 (34). pp. 17907-17918. doi:10.1074/jbc.M116.733576

M

Marshall, John M., Touré, Mahamoudou, Ouédraogo, André Lin, Ndhlovu, Micky, Kiware, Samson S., Rezai, Ashley, Nkhama, Emmy, Griffin, Jamie T., Hollingsworth, T. Déirdre, Doumbia, Seydou, Govella, Nicodem J., Ferguson, Neil M. and Ghani, Azra C. (2016) Key traveller groups of relevance to spatial malaria transmission : a survey of movement patterns in four sub-Saharan African countries. Malaria Journal, 15 (200). pp. 1-12. doi:DOI: 10.1186/s12936-016-1252-3

Martins, Bruno M. C., Das, Arijit K., Antunes, Liliana and Locke, James C. W. (2016) Frequency doubling in the cyanobacterial circadian clock. Molecular Systems Biology, 12 (12). 896. doi:10.15252/msb.20167087

Maughan, Daniel, Lillywhite, Robert, Pearce, Steve, Pillinger, Toby and Weich, Scott (2016) Evaluating sustainability : a retrospective cohort analysis of the Oxfordshire therapeutic community. BMC Psychiatry, 16 (1). 285. doi:10.1186/s12888-016-0994-3

Maughan, Daniel L., Patel, Alisha, Parveen, Tahmina, Braithwaite, Isobel, Cook, Jonathan, Lillywhite, Robert and Cooke, Matthew (2016) Primary-care-based social prescribing for mental health : an analysis of financial and environmental sustainability. Primary Health Care Research & Development, 17 (2). pp. 114-121. doi:10.1017/S1463423615000328

McCarthy, John E. G. (2016) WISB : Warwick Integrative Synthetic Biology Centre. Biochemical Society Transactions, 44 (3). pp. 678-680. doi:10.1042/BST20160011

McClean, Gary J., Meredith, Will, Cross, Andrew, Heal, Kate V., Bending, G. D. and Sohi, Saran P. (2016) The priming potential of environmentally weathered pyrogenic carbon during land-use transition to biomass crop production. GCB Bioenergy, 8 (4). pp. 805-817. doi:10.1111/gcbb.12293

(2016) Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle - plant interface. Genome Biology, 17 (1). 227. doi:10.1186/s13059-016-1088-8

Medley, Graham, Turner, H. C., Baggaley, R. F., Holland, C. and Hollingsworth, T. Déirdre (2016) The role of more sensitive helminth diagnostics in mass drug administration campaigns : elimination and health impacts. In: Advances in Parasitology. Mathematical Models for Neglected Tropical Diseases — Essential Tools for Control and Elimination, Part B, 94 . Academic Press, pp. 343-392. ISBN 9780128103951

Melin, Amanda D., Wells, Konstans, Moritz, Gillian L., Kistler, Logan, Orkin, Joseph D., Timm, Robert M., Bernard, Henry, Lakim, Maklarin B., Perry, George H., Kawamura, Shoji and Dominy, Nathaniel J. (2016) Euarchontan opsin variation brings new focus to primate origins. Molecular Biology and Evolution, 33 (4). pp. 1029-1041. doi:10.1093/molbev/msv346

Meng, Xiang, Firczuk, Helena, Pietroni, Paola, Westbrook, Richard, Dacheux, Estelle, Mendes, Pedro and McCarthy, John E. G. (2016) Minimum-noise production of translation factor eIF4G maps to a mechanistically determined optimal rate control window for protein synthesis. Nucleic Acids Research, 45 (2). pp. 1015-1025. doi:10.1093/nar/gkw1194

Menon, Binuraj R. K., Hardman, Samantha J. O., Scrutton, Nigel S. and Heyes, Derren J. (2016) Multiple active site residues are important for photochemical efficiency in the light-activated enzyme protochlorophyllide oxidoreductase (POR). Journal of Photochemistry and Photobiology B: Biology , 161 . pp. 236-243. doi:10.1016/j.jphotobiol.2016.05.029

Menon, Binuraj R. K., Latham, Jonathan, Dunstan, Mark S., Brandenburger, Eileen, Klemstein, Ulrike, Leys, David, Karthikeyan, Chinnan, Greaney, Michael F., Shepherd, Sarah A. and Micklefield, Jason (2016) Structure and biocatalytic scope of thermophilic flavin-dependent halogenase and flavin reductase enzymes. Organic and Biomolecular Chemistry, 14 (39). pp. 9354-9361. doi:10.1039/C6OB01861K

Millard, Christopher J., Varma, Niranjan, Saleh, Almutasem, Morris, Kyle L., Watson, Peter J., Bottrill, Andrew R., Fairall, Louise, Smith, Corinne J. and Schwabe, John W. R. (2016) The structure of the core NuRD repression complex provides insights into its interaction with chromatin. eLife, 5 . e13941. doi:10.7554/eLife.13941

WHO RSV Vaccine Consultation Expert Group (Including: Modjarrad, Kayvon, Giersing, Birgitte, Kaslow, David C., Smith, Peter G. and Moorthy, Vasee S.). (2016) WHO consultation on Respiratory Syncytial Virus Vaccine Development Report from a World Health Organization Meeting held on 23–24 March 2015. Vaccine, 34 (2). pp. 190-197. doi:10.1016/j.vaccine.2015.05.093

Montefusco, Francesco, Akman, Ozgur E., Soyer, Orkun S. and Bates, Declan (2016) Ultrasensitive negative feedback control : a natural approach for the design of synthetic controllers. PLoS One, 11 (8). e0161605. doi:10.1371/journal.pone.0161605

Morris, Karl, Barker, Guy C., Walley, Peter Glen, Lynn, James R. and Finch-Savage, William E. (2016) Trait to gene analysis reveals that allelic variation in three genes determines seed vigour. New Phytologist, 212 (4). pp. 964-976. doi:10.1111/nph.14102

Métras, Raphaëlle, Cavalerie, Lisa, Dommergues, Laure, Mérot, Philippe, Edmunds, W. John, Keeling, Matthew James, Cêtre-Sossah, Catherine and Cardinale, Eric (2016) The epidemiology of rift valley fever in Mayotte : insights and perspectives from 11 years of data. PLoS Neglected Tropical Diseases, 10 (6). pp. 1-12. e0004783. doi:10.1371/journal.pntd.0004783

Müller, Bent, Wilcke, Arndt, Boulesteix, Anne-Laure, Brauer, Jens, Passarge, Eberhard, Boltze, Johannes and Kirsten, Holger (2016) Improved prediction of complex diseases by common genetic markers : state of the art and further perspectives. Human Genetics, 135 (3). pp. 259-272. doi:10.1007/s00439-016-1636-z

Müller, Bent, Wilcke, Arndt, Czepezauer, Ivonne, Ahnert, Peter, Boltze, Johannes and Kirsten, Holger (2016) Association, characterisation and meta-analysis of SNPs linked to general reading ability in a German dyslexia case-control cohort. Scientific Reports, 6 (1). 27901 . doi:10.1038/srep27901

N

Nedoboy, P. E., Mohammed, S., Kapoor, K., Bhandare, Amol M., Farnham, M. M. J. and Pilowsky, P. M. (2016) pSer40 tyrosine hydroxylase immunohistochemistry identifies the anatomical location of C1 neurons in rat RVLM that are activated by hypotension. Neuroscience, 317 . pp. 162-172.

Nelson, A. C., Mould, Arne W., Bikoff, Elizabeth K. and Robertson, Elizabeth J. (2016) Single-cell RNA-seq reveals cell type-specific transcriptional signatures at the maternal-foetal interface during pregnancy. Nature Communications, 7 . 11414. doi:10.1038/ncomms11414

Nelson, E Andrea, Wright-Hughes, Alexandra, Brown, Sarah, Lipsky, Benjamin A, Backhouse, Michael, Bhogal, Moninder, Ndosi, Mwidimi, Reynolds, Catherine, Sykes, Gill, Dowson, Christopher G., Edmonds, Michael, Vowden, Peter, Jude, Edward B., Dickie, Tom and Nixon, Jane (2016) Concordance in diabetic foot ulceration : a cross-sectional study of agreement between wound swabbing and tissue sampling in infected ulcers. Health Technology Assessment, 20 (82). doi:10.3310/hta20820

Ni, Jun, Yu, Zhiming, Du, Guankui, Zhang, Yanyan, Taylor, Jemma L., Shen, Chenjia, Xu, Jing, Liu, Xunyan, Wang, Yifeng and Wu, Yunrong (2016) Heterologous expression and functional analysis of Rice glutamate receptor-like family indicates its role in glutamate triggered calcium flux in rice roots. Rice, 9 (1). doi:10.1186/s12284-016-0081-x

Nieuwland, Jeroen, Stamm, Petra, Wen, Bo, Randall, Ricardo S., Murray, James A. H. and Bassel, George (2016) Re-induction of the cell cycle in the Arabidopsis post-embryonic root meristem is ABA-insensitive, GA-dependent and repressed by KRP6. Scientific Reports, 6 (1). 23586 . doi:10.1038/srep23586

Nitzsche, Björn, Barthel, Henryk, Lobsien, Donald, Boltze, Johannes, Zeisig, Vilia and Dreyer, Antje Y. (2016) Focal cerebral ischemia by permanent middle cerebral artery occlusion in sheep : surgical technique, clinical imaging, and histopathological results. In: Janowski , M., (ed.) Experimental Neurosurgery in Animal Models. New York, NY: Humana Press, pp. 195-225. ISBN 9781493937288

Ntoukakis, Vardis and Gimenez-Ibanez, S. (2016) Parasitic plants--A CuRe for what ails thee. Science, 353 (6298). pp. 442-443. doi:10.1126/science.aag3111

Nyiro, Joyce Uchi, Sande, Charles Jumba, Mutunga, Martin, Kiyuka, Patience Kerubo, Munywoki, Patrick Kioo, Scott, John Anthony G. and Nokes, D. James (2016) Absence of association between cord specific antibody levels and severe respiratory syncytial virus (RSV) disease in early infants : a case control study from coastal Kenya. PLoS One, 11 (11). e0166706. doi:10.1371/journal.pone.0166706

O

Oettinghaus, B., Schulz, J. M., Restelli, L. M., Licci, M., Savoia, C., Schmidt, A., Schmitt, K., Grimm, A., Morè, Lorenzo, Hench, J., Tolnay, M., Eckert, A., D'Adamo, P., Franken, P., Ishihara, N., Mihara, K., Bischofberger, J., Scorrano, L. and Frank, S. (2016) Synaptic dysfunction, memory deficits and hippocampal atrophy due to ablation of mitochondrial fission in adult forebrain neurons. Cell Death and Differentiation, 23 . pp. 18-23. doi:10.1038/cdd.2015.39

Ortmayer, Mary, Lafite, Pierre, Menon, Binuraj R. K., Tralau, Tewes, Fisher, Karl, Denkhaus, Lukas, Scrutton, Nigel S., Rigby, Stephen E. J., Munro, Andrew W., Hay, Sam and Leys, David (2016) An oxidative N-demethylase reveals PAS transition from ubiquitous sensor to enzyme. Nature, 539 (7630). pp. 593-597. doi:10.1038/nature20159

Otieno, James R., Agoti, Charles N., Gitahi, Caroline W., Bett, Ann, Ngama, Mwanajuma, Medley, Graham F, Cane, Patricia A. and Nokes, D. James (2016) Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya. Journal of Virology, 90 (10). pp. 4990-5002. doi:10.1128/JVI.03105-15

Otten, Lucienne, Fullam, Elizabeth and Gibson, Matthew I. (2016) Discrimination between bacterial species by ratiometric analysis of their carbohydrate binding profile. Molecular BioSystems, 12 (2). pp. 341-344. doi:10.1039/c5mb00720h

Owor, Betty E., Masankwa, Geoffrey N., Mwango, Lilian C., Njeru, Regina W., Agoti, Charles N. and Nokes, D. James (2016) Human metapneumovirus epidemiological and evolutionary patterns in Coastal Kenya, 2007-11. BMC Infectious Diseases, 16 (1). doi:10.1186/s12879-016-1605-0

P

Palara, Anthimi, Sagona, Antonia P. and Nezis, Ioannis P. (2016) Preparation of Drosophila follicles for transmission electron microscopy. In: Oogenesis : Methods and Protocols. Methods in Molecular Biology, 1457 . Springer, pp. 105-110. ISBN 9781493937936

Pasini, Martina, Fernández-Castané, Alfred , Jaramillo, Alfonso, de Mas, Carles , Caminal, Gloria and Ferrer, Pau (2016) Using promoter libraries to reduce metabolic burden due to plasmid-encoded proteins in recombinant Escherichia coli. New Biotechnology, 33 (1). pp. 78-90. doi:10.1016/j.nbt.2015.08.003

Pauli, Ruth, Bowring, Alexander, Reynolds, Richard, Chen, Gang, Nichols, Thomas E. and Maumet, Camille (2016) Exploring fMRI Results Space : 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM. Frontiers in neuroinformatics, 10 . 24. doi:10.3389/fninf.2016.00024

Penman, Bridget S., Moffett, Ashley, Chazara, Olympe, Gupta, Sunetra and Parham, Peter (2016) Reproduction, infection and killer-cell immunoglobulin-like receptor haplotype evolution. Immunogenetics, 68 (10). pp. 755-764. doi:10.1007/s00251-016-0935-9

Perez-Sepulveda, Blanca, Redgwell, Tamsin, Rihtman, Branko, Pitt, Frances Diana, Scanlan, David J. , Millard, Andrew D. and Hantke, Klaus (2016) Marine phage genomics : the tip of the iceberg. FEMS Microbiology Letters, 363 (15). doi:10.1093/femsle/fnw158

Perry, David, Paulose Nadappuram, Binoy, Momotenko, Dmitry, Voyias, Philip D., Page, Ashley M., Tripathi, Gyanendra, Frenguelli, Bruno G. and Unwin, Patrick R. (2016) Surface charge visualization at viable living cells. Journal of the American Chemical Society, 138 (9). pp. 3152-3160. doi:10.1021/jacs.5b13153

Phan, Huyen T. T., Rybak, Kasia, Furuki, Eiko, Breen, Susan, Solomon, Peter S., Oliver, Richard P. and Tan, Kar-Chun (2016) Differential effector gene expression underpins epistasis in a plant fungal disease. The Plant Journal, 87 (4). pp. 343-354. doi:10.1111/tpj.13203

Pitt, Frances Diana, Millard, Andrew D., Ostrowski, Martin, Dervish, Suat, Mazard, Sophie, Paulsen, Ian T., Zubkov, Mikhail V. and Scanlan, David J. (2016) A sample-to-sequence protocol for genus targeted transcriptomic profiling : application to marine Synechococcus. Frontiers in Microbiology, 7 . 1592. doi:10.3389/fmicb.2016.01592

Popat, Roman, Harrison, Freya, McNally, Luke, Williams, Paul and Diggle, Stephen P. (2016) Environmental modification via a quorum sensing molecule influences the social landscape of siderophore production. Working Paper. bioRxiv . (Unpublished)

Probert, William J. M. , Shea, Katriona, Fonnesbeck, Christopher J., Runge, Michael C., Carpenter, Tim E., Dürr, Salome, Garner, M. G. (Michael Graeme), Harvey, Neil, Stevenson, Mark A., Webb, Colleen T., Werkman, Marleen, Tildesley, Michael J. and Ferrari, Matthew J. (2016) Decision-making for foot-and-mouth disease control : objectives matter. Epidemics, 15 . pp. 10-19. doi:10.1016/j.epidem.2015.11.002

Puxty, Richard J., Millard, Andrew D., Evans, David J. and Scanlan, David J. (2016) Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology, 26 (12). pp. 1585-1589. doi:10.1016/j.cub.2016.04.036

Pösel, Claudia, Möller, Karoline, Boltze, Johannes, Wagner, Daniel-Christoph and Weise, Gesa (2016) Isolation and flow cytometric analysis of immune cells from the ischemic mouse brain. Journal of Visualized Experiments (108). e53658. doi:10.3791/53658

Q

Quansah, Emmanuel and Karikari, Thomas K. (2016) Potential role of metabolomics in the improvement of research on traditional African medicine. Phytochemistry Letters, 17 . pp. 270-277. doi:10.1016/j.phytol.2016.08.004

Quansah, Emmanuel, Ohene, Lilian Akorfa, Norman, Linda, Mireku, Michael Osei and Karikari, Thomas K. (2016) Social factors influencing child health in Ghana. PLoS One, 11 (1). pp. 1-20. e0145401. doi:10.1371/journal.pone.0145401

Quansah, Emmanuel, Sarpong, Esther and Karikari, Thomas K. (2016) Disregard of neurological impairments associated with neglected tropical diseases in Africa. eNeurologicalSci, 3 . pp. 11-14. doi:10.1016/j.ensci.2015.11.002

R

Rahmanpour, Rahman , Rea, Dean, Jamshidi, Shirin, Fülöp, Vilmos and Bugg, Tim (2016) Structure of thermobifida fusca DyP-type peroxidase and activity towards kraft lignin and lignin model compounds. Archives of Biochemistry and Biophysics, 594 . pp. 54-60. doi:10.1016/j.abb.2016.02.019

Randall, L. V., Green, M. J., Chagunda, M. G. G., Mason, C., Green, Laura E. and Huxley, J. N. (2016) Lameness in dairy heifers ; impacts of hoof lesions present around first calving on future lameness, milk yield and culling risk. Preventive Veterinary Medicine, 133 . pp. 52-63. doi:10.1016/j.prevetmed.2016.09.006

Ray, Swagat and Anderson, Emma C. (2016) Stimulation of translation by human Unr requires cold shock domains 2 and 4, and correlates with poly(A) binding protein interaction. Scientific Reports, 6 . 22461. doi:10.1038/srep22461

Real, Francisco X., Ward, Douglas G., Baxter, Laura, Gordon, Naheema S., Ott, Sascha, Savage, Richard S., Beggs, Andrew D., James, Jonathan D., Lickiss, Jennifer, Green, Shaun, Wallis, Yvonne, Wei, Wenbin, James, Nicholas D., Zeegers, Maurice P., Cheng, K. K., Mathews, Glenn M., Patel, Prashant, Griffiths, Michael and Bryan, Richard T. (2016) Multiplex PCR and next generation sequencing for the non-invasive detection of bladder cancer. PLoS One, 11 (2). pp. 1-11. e0149756. doi:10.1371/journal.pone.0149756

Reed, Kelly (2016) Archaeobotanical analysis of Bronze Age Feudvar. In: Kroll, H. and Reed, Kelly, (eds.) Die Archäobotanik Feudvar III. Würzburger University Press, pp. 197-297. ISBN 9783958260320

Reed, Kelly and Colledge, Sue (2016) Plant economies in the Neolithic Eastern Adriatic : archaeobotanical results from Danilo and Pokrovnik. Vjesnik za Arheologiju i Povijest Dalmatinsku ; Journal of Dalmatian Archaeology and History, 109 (1). pp. 9-23.

Reed, Kelly and Drnić, Ivan (2016) Iron age diet at Sisak, Croatia : Archaeobotanical evidence of Foxtail Millet (Setaria Italica[L.] P. Beauv.). Oxford Journal of Archaeology, 35 (4). pp. 359-368. doi:10.1111/ojoa.12101

Reed, Kelly and Podrug, Emil (2016) Reconstructing late Neolithic plant economies at the Eastern Adriatic site of Velištak (5th millennium cal BC). Documenta Praehistorica, 43 . pp. 399-412. doi:10.4312/dp.43.19

Reinhardt , Hagen , Hachez , Charles , Bienert, Manuela Désirée, Beebo , Azeez , Swarup , Kamal , Voss , Ute, Bouhidel , Karim , Frigerio, Lorenzo, Schjoerring, Jan K. , Bennett , Malcolm J. and Chaumont , Francois (2016) Tonoplast aquaporins facilitate lateral root emergence. Plant Physiology, 170 (3). pp. 1640-1654. 01635.2015. doi:10.1104/pp.15.01635

Rihtman, Branko, Meaden, Sean, Clokie, Martha R. J., Koskella, Britt and Millard, Andrew D. (2016) Assessing Illumina technology for the high-throughput sequencing of bacteriophage genomes. PeerJ, 4 . pp. 1-21. e2055. doi:10.7717/peerj.2055

Rock, Kat S., Medley, Graham, Quinnell, R. J. and Courtenay, Orin (2016) Progress in the mathematical modelling of visceral leishmaniasis. In: Advances in Parasitology. Mathematical Models for Neglected Tropical Diseases Essential Tools for Control and Elimination, Part B, 94 . Elsevier BV, 49-131 . ISBN 9780128099711

Rock, Kat S., Medley, Graham, Quinnell, Rupert and Courtenay, Orin (2016) Progress in the mathematical modelling of visceral leishmaniasis. In: Advances in Parasitology. Academic Press. (In Press)

Rodrigo, Guillermo, Prakash, Satya, Cordero, Teresa, Kushwaha, Manish and Jaramillo, Alfonso (2016) Functionalization of an antisense small RNA. Journal of Molecular Biology, 428 Part B (5). pp. 889-892. doi:10.1016/j.jmb.2015.12.022

Rooney, Nicola J., Clark, Corinna C. A. and Casey, Rachel A. (2016) Minimizing fear and anxiety in working dogs : a review. Journal of Veterinary Behavior: Clinical Applications and Research, 16 . pp. 53-64. doi:10.1016/j.jveb.2016.11.001

Ruparell, Avika, Dubern, Jean Frederic, Ortori, Cartherine A, Harrison, Freya, Halliday, Nigel M, Emtage, Abigail, Ashawesh, Mahmoud, Laughton, Charles A, Diggle, Steve, Williams, Paul, Barrett, David A and Hardie, Kim Rachael (2016) The fitness burden imposed by synthesizing quorum sensing signals. Working Paper. bioRxiv . (Unpublished)

Ruparell, Avika, Dubern, Jean Frederic, Ortori, Cartherine A, Harrison, Freya, Halliday, Nigel M., Emtage, Abigail, Ashawesh, Mahmoud, Laughton, Charles A., Diggle, Stephen P., Williams, P., Barrett, D. A. (David A.) and Hardie, Kim Rachael (2016) The fitness burden imposed by synthesising quorum sensing signals. Scientific Reports, 6 . pp. 1-10. 33101. doi:10.1038/srep33101

Rutolo, Massimo, Iliescu, Daciana, Clarkson, John P. and Covington, James A. (2016) Early identification of potato storage disease using an array of metal-oxide based gas sensors. Postharvest Biology and Technology, 116 . pp. 50-58. doi:10.1016/j.postharvbio.2015.12.028

Römer, Rudolf A., Wells, Stephen A., Jiménez Roldán, J. E. (José Emilio), Bhattacharyya, Moitrayee, Vishweshwara, Saraswathi and Freedman, R. B. (2016) The flexibility and dynamics of protein disulphide-isomerase. Proteins : Structure, Function, and Bioinformatics, 84 (12). pp. 1776-1785. doi:10.1002/prot.25159

S

Sagona, Antonia P., Grigonyte, Aurelija M., MacDonald, Paul and Jaramillo, Alfonso (2016) Genetically modified bacteriophages. Integrative Biology, 8 . pp. 465-474. doi:10.1039/c5ib00267b

Salimraj, Ramya, Zhang, Lihong, Hinchliffe, Philip, Wellington, E. M. H., Brem, Jürgen, Schofield, Christopher J., Gaze, William H. and Spencer, James (2016) Structural and biochemical characterization of Rm3, a subclass B3 Metallo-β-Lactamase identified from a functional metagenomic study. Antimicrobial Agents and Chemotherapy, 60 (10). pp. 5828-5840. doi:10.1128/AAC.00750-16

Sari, Citra Recha, Taylor, Jemma L., Hong, Yiguo and Jackson, Stephen D. (2016) Development of a transient viral CRISPR expression system to manipulate flowering time in plants. International Journal of Applied and Physical Sciences, 2 (3). pp. 65-70. doi:doi:10.20469/ijaps.2.50002-3

Sazinas, Pavelas, Smith, Carrie, Suhaimi, Aqilah, Hobman, Jon L., Dodd, Christine and Millard, Andrew D. (2016) Draft genome sequence of the Bacteriophage vB_Eco_slurp01. Genome Announcements, 4 (6). e01111-16. doi:10.1128/genomeA.01111-16

Sebastián, Marta, Smith, Alastair F., González, José M., Fredricks, Helen F., Van Mooy, Benjamin, Koblížek, Michal, Brandsma, Joost, Koster, Grielof, Mestre, Mireia, Mostajir, Behzad, Pitta, Paraskevi, Postle, Anthony D., Sánchez, Pablo, Gasol, Josep M., Scanlan, David J. and Chen, Yin (2016) Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency. The ISME Journal, 10 (4). pp. 968-978. doi:10.1038/ismej.2015.172

Sgamma, Tiziana, Pape, Judith, Massiah, Andrea J. and Jackson, Stephen D. (2016) Selection of reference genes for diurnal and developmental time-course real-time PCR expression analyses in lettuce. Plant Methods, 12 (1). pp. 1-9. doi:10.1186/s13007-016-0121-y

Shafie, Alaa, Xue, Mingzhan, Barker, Guy C., Zehnder, Daniel, Thornalley, Paul J. and Rabbani, Naila (2016) Reappraisal of putative glyoxalase 1-deficient mouse and dicarbonyl stress on embryonic stem cells in vitro. Biochemical Journal, 473 (22). pp. 4255-4270. doi:10.1042/BCJ20160691

Shaw, Sophie, Le Cocq, Kate, Paszkiewicz, Konrad, Moore, Karen, Winsbury, Rebecca, de Torres Zabala, Marta, Studholme, David, Salmon, Deborah, Thornton, Christopher R. and Grant, Murray R. (2016) Transcriptional reprogramming underpins enhanced plant growth promotion by the biocontrol fungus Trichoderma hamatum GD12 during antagonistic interactions with Sclerotinia sclerotiorumin soil. Molecular Plant Pathology, 17 (9). pp. 1425-1441. doi:10.1111/mpp.12429

Shepherd, Sarah A., Menon, Binuraj R. K., Fisk, Heidi, Struck, Anna-Winona, Levy, Colin, Leys, David and Micklefield, Jason (2016) A structure-guided switch in the regioselectivity of a tryptophan halogenase. Chembiochem, 17 (9). pp. 821-824. doi:10.1002/cbic.201600051

Sidda, John D., Poon, Vincent, Song, Lijiang, Wang, Weishan, Yang, Keqian and Corre, Christophe (2016) Overproduction and identification of butyrolactones SCB1-8 in the antibiotic production superhost Streptomyces M1152. Organic and Biomolecular Chemistry, 14 . pp. 6390-6393. doi:10.1039/c6ob00840b

Singh, Dinesh, Rathaur, Priyanka Singh and Vicente, J. G. (2016) Characterization, genetic diversity and distribution of Xanthomonas campestris pv. campestris races causing black rot disease in cruciferous crops of India. Plant Pathology, 65 (9). pp. 1411-1418. doi:10.1111/ppa.12508

Skeide, Michael A., Kraft, Indra, Müller, Bent, Schaadt, Gesa, Neef, Nicole E., Brauer, Jens, Wilcke, Arndt, Kirsten, Holger, Boltze, Johannes and Friederici, Angela D. (2016) NRSN1 associated grey matter volume of the visual word form area reveals dyslexia before school. Brain, 139 (10). pp. 2792-2803. doi:10.1093/brain/aww153

Smith, Claire, Scott, Paul, O’Callaghan, Christopher, Easton, A. J. (Andrew J.) and Dimmock, N. J. (2016) A defective interfering influenza RNA inhibits infectious influenza virus replication in human respiratory tract cells : a potential new human antiviral. Viruses, 8 (8). 237. doi:10.3390/v8080237

Smith, Nichola A., Zhang, Pingyu, Greenough, Simon E., Horbury, Michael D., Clarkson, Guy J., McFeely, Daniel, Habtemariam, Abraha, Salassa, Luca, Stavros, Vasilios G., Dowson, Christopher G. and Sadler, P. J. (2016) Combatting AMR : photoactivatable ruthenium(ii)-isoniazid complex exhibits rapid selective antimycobacterial activity. Chemical Science, 8 (1). pp. 395-404. doi:10.1039/C6SC03028A

Sotenko, Maria V., Coles, Stuart R., McEwen, Iain, DeCampos, Rejane, Barker, Guy C. and Kirwan, Kerry (2016) Biodegradation as natural fibre pre-treatment in composite manufacturing. Green Materials, 4 (1). pp. 8-17. doi:10.1680/jgrma.15.00025

Sousa, Paulo and Swiney, Lauren (2016) Intentionality, morality, and the incest taboo in Madagascar. Frontiers in Psychology, 7 . 494. doi:10.3389/fpsyg.2016.00494

Stamm, Petra, Strauss, Soeren, Montenegro-Johnson, Thomas D., Smith, Richard and Bassel, George (2016) In silico methods for cell annotation, quantification of gene expression, and cell geometry at single-cell resolution using 3DCellAtlas. In: Plant Hormones. New York, NY: Humana Press, pp. 99-123. ISBN 9781493964673

Stamm, Petra, Topham, Alexander T., Mukhtar, Nur Karimah, Jackson, Matthew D. B., Tomé, Daniel F. A., Beynon, Jim L. and Bassel, George (2016) The transcription factor ATHB5 affects GA-mediated plasticity in hypocotyl cell growth during seed germination. Plant Physiology, 173 (1). pp. 907-917. doi:10.1104/pp.16.01099

Stead, D. E., Parkinson, N., Aspin, A., Heeney, J., Crump, S. and Vicente, Joana G. (2016) First occurrence of Xanthomonas campestris pv. raphanion wallflower (Erysimum cheiri) in the United Kingdom. New Disease Reports, 34 . 14. doi:10.5197/j.2044-0588.2016.034.014

Steenackers, Ward Jan, Cesarino, Igor, Klíma, Petr, Quareshy, Mussa, Vanholme, Ruben, Corneillie, Sander, Kumpf, Robert P., Van de Wouwer, Dorien, Ljung, Karin, Goeminne, Geert, Novak, Ondrej, Zažímalová, Eva, Napier, R. (Richard), Boerjan, Wout A. and Vanholme, Bartel (2016) The allelochemical MDCA inhibits lignification and affects auxin homeostasis. Plant Physiology, 172 (2). pp. 874-888. doi:10.1104/pp.15.01972

Steenackers, Ward Jan, Klíma, Petr, Quareshy, Mussa, Cesarino, Igor, Kumpf, Robert P., Corneillie, Sander, Araújo, Pedro, Viaene, Tom, Goeminne, Geert, Nowack, Moritz K, Ljung, Karin, Friml, Jiří, Blakeslee, Joshua J, Novák, Ondřej, Zažímalová, Eva, Napier, R. (Richard), Boerjan, Wout A and Vanholme, Bartel (2016) cis-cinnamic acid is a novel, natural auxin efflux inhibitor that promotes lateral root formation. Plant Physiology, 173 (1). pp. 552-565. doi:10.1104/pp.16.00943

(2016) Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131. mBio, 7 (2). doi:10.1128/mBio.02162-15

Studholme, David J., McDougal, R. L., Sambles, Christine, Hansen, Everett, Hardy, Giles, Grant, Murray R., Ganley, R. J. and Williams, N. M. (2016) Genome sequences of six Phytophthora species associated with forests in New Zealand. Genomics Data , 7 . pp. 54-56. doi:10.1016/j.gdata.2015.11.015

T

Tandonnet, Sophie and Pires-da Silva, André Francisco (2016) Phenotypic plasticity and developmental innovations in nematodes. Current Opinion in Genetics and Development, 39 . pp. 8-13. doi:10.1016/j.gde.2016.05.018

Taylor, Andrew, Vágány, Viktória, Jackson, Alison C., Harrison, Richard J., Rainoni, Alessandro and Clarkson, John P. (2016) Identification of pathogenicity-related genes in Fusarium oxysporum f. sp. cepae. Molecular Plant Pathology, 17 (7). pp. 1032-1047. doi:10.1111/mpp.12346

Thatcher, Louise F., Cevik, Volkan, Grant, Murray R., Zhai, Bing, Jones, Jonathan D. G., Manners, John M. and Kazan, Kemal (2016) Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum. Journal of Experimental Botany, 67 (8). pp. 2367-2386. doi:10.1093/jxb/erw040

Torrecilha, R. B. P., Utsunomiya, Y. T., Bosco, A. M., Almeida, B. F., Pereira, P. P., Narciso, L. G., Pereira, D. C. M., Baptistiolli, L., Calvo-Bado, Leo A., Courtenay, Orin, Nunes, C. M. and Ciarlini, P. C. (2016) Correlations between peripheral parasite load and common clinical and laboratory alterations in dogs with visceral leishmaniasis. Preventive Veterinary Medicine, 132 . pp. 83-87. doi:10.1016/j.prevetmed.2016.08.006

Torres Zabala, Marta de, Zhai, Bing, Jayaraman, Siddharth, Eleftheriadou, Garoufalia, Winsbury, Rebecca, Yang, Ron, Truman, William, Tang, Saijung, Smirnoff, N. and Grant, Murray R. (2016) Novel JAZ co-operativity and unexpected JA dynamics underpin Arabidopsis defence responses to Pseudomonas syringae infection. New Phytologist, 209 (3). pp. 1120-1134. doi:10.1111/nph.13683

Trimmer, Mark, Chronopoulou, Panagiota-Myrsini, Maanoja, Susanna T., Upstill-Goddard, Robert C., Kitidis, Vassilis and Purdy, Kevin J. (2016) Nitrous oxide as a function of oxygen and archaeal gene abundance in the North Pacific. Nature Communications, 7 . 13451. doi:10.1038/ncomms13451

Tsapras, Panagiotis , Sagona, Antonia P. and Nezis, Ioannis P. (2016) Immuno-gold labeling of Drosophila follicles for transmission electron microscopy. In: Oogenesis : Methods and Protocols. Methods in Molecular Biology, 1457 . Springer, pp. 97-103. ISBN 9781493937936

Turner, Hugo C., Truscott, James E., Bettis, Alison A., Hollingsworth, T. Déirdre, Brooker, Simon J. and Anderson, Roy M. (2016) Analysis of the population-level impact of co-administering ivermectin with albendazole or mebendazole for the control and elimination of Trichuris trichiura. Parasite Epidemiology and Control, 1 (2). pp. 177-178. doi:10.1016/j.parepi.2016.02.004

Turner, Hugo C., Truscott, James E., Fleming, Fiona M., Hollingsworth, T. Déirdre, Brooker, Simon J. and Anderson, Roy M. (2016) Cost-effectiveness of scaling up mass drug administration for the control of soil-transmitted helminths : a comparison of cost function and constant costs analyses. The Lancet Infectious Diseases, 16 (7). pp. 838-846. doi:10.1016/S1473-3099(15)00268-6

U

Uzunova, Veselina V., Quareshy, Mussa, Del Genio, Charo I. and Napier, R. (Richard) (2016) Tomographic docking suggests the mechanism of auxin receptor TIR1 selectivity. Open Biology, 6 (10). 160139. doi:10.1098/rsob.160139

V

Vesty, Eleanor F., Saidi, Younousse, Moody, Laura A., Holloway, Daniel, Whitbread, Amy, Needs, Sarah, Choudhary, Anushree, Burns, Bethany, McLeod, Daniel, Bradshaw, Susan J., Bae, Hansol, King, Brian Christopher, Bassel, George, Simonsen, Henrik Toft and Coates, Juliet C. (2016) The decision to germinate is regulated by divergent molecular networks in spores and seeds. New Phytologist, 211 (3). pp. 952-966. doi:10.1111/nph.14018

Vogeley, L., El Arnaout, T., Bailey, J., Stansfeld, Phillip J., Boland, C. and Caffrey, M. (2016) Structural basis of lipoprotein signal peptidase II action and inhibition by the antibiotic globomycin. Science, 351 (6275). pp. 876-880. doi:10.1126/science.aad3747

W

Wang, Weishan, Yang, Tongjian, Li, Yihong, Li, Shanshan, Yin, Shouliang, Styles, Kathryn, Corre, Christophe and Yang, Keqian (2016) Development of a synthetic oxytetracycline-inducible expression system for streptomycetes using de novo characterized genetic parts. ACS Synthetic Biology, 5 (7). pp. 765-773. doi:10.1021/acssynbio.6b00087

Warmington, Rachel and Clarkson, John P. (2016) Volatiles from biofumigant plants have a direct effect on carpogenic germination of sclerotia and mycelial growth of Sclerotinia sclerotiorum. Plant and Soil, 401 (1). pp. 213-229. doi:10.1007/s11104-015-2742-8

Waterworth, W. M., Footitt, S., Bray, C. M., Finch-Savage, William E. and West, C. E. (2016) DNA damage checkpoint kinase ATM regulates germination and maintains genome stability in seeds. Proceedings of the National Academy of Sciences of the United States of America, 113 (34). pp. 9647-9652. doi:10.1073/pnas.1608829113

Werkman, Marleen, Tildesley, Michael J., Brooks-Pollock, Ellen and Keeling, Matthew James (2016) Preserving privacy whilst maintaining robust epidemiological predictions. Epidemics, 17 . pp. 35-41. doi:10.1016/j.epidem.2016.10.004

West, Nyree J., Lepère, Cécile, Manes, Carmem-Lara de O., Catala, Philippe, Scanlan, David J. and Lebaron, Philippe (2016) Distinct spatial patterns of SAR11, SAR86, and actinobacteria diversity along a transect in the ultra-oligotrophic South Pacific ocean. Frontiers in Microbiology, 7 . 234. doi:10.3389/fmicb.2016.00234

Whittles, Lilith K. and Didelot, Xavier (2016) Epidemiological analysis of the Eyam plague outbreak of 1665–1666. Proceedings of the Royal Society B: Biological Sciences, 283 (1830). doi:10.1098/rspb.2016.0618

Wibowo, Anjar, Becker, Claude, Marconi, Gianpiero, Durr, Julius, Price, Jonathan, Hagmann, Jorg, Papareddy, Ranjith, Putra, Hadi, Kageyama, Jorge, Becker, Jorg, Weigel, Detlef and Gutierrez-Marcos, José F. (2016) Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity. eLife, 5 . e13546. doi:10.7554/eLife.13546

(2016) Challenges in microbial ecology : building predictive understanding of community function and dynamics. The ISME Journal, 2016 (10). pp. 2557-2568. doi:10.1038/ismej.2016.45

Wielgoss, Sébastien, Didelot, Xavier, Chaudhuri, Roy R, Liu, Xuan, Weedall, Gareth D, Velicer, Gregory J and Vos, Michiel (2016) A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium Myxococcus xanthus. The ISME Journal, 10 (10). pp. 2468-2477. doi:10.1038/ismej.2016.34

Windheim, Mark, Höning, Stefan, Leppard, Keith, Butler, Larrisa, Seed, Christina, Ponnambalam, Sreenivasan and Burgert, Hans-Gerhard (2016) Sorting motifs in the cytoplasmic tail of the immunomodulatory E3/49K protein of species D adenoviruses modulate cell surface expression and ectodomain shedding. Journal of Biological Chemistry, 291 . pp. 6796-6812. doi:10.1074/jbc.M115.684787

Withycombe, C., Purdy, Kevin J. and Maddocks, S. E. (2016) Micro-management : curbing chronic wound infection. Molecular Oral Microbiology, 2041-1006 . doi:10.1111/omi.12174

Y

Yahara, Koji, Didelot, Xavier, Jolley, Keith A., Kobayashi, Ichizo, Maiden, Martin C. J., Sheppard, Samuel K. and Falush, Daniel (2016) The landscape of realized homologous recombination in pathogenic bacteria. Molecular Biology and Evolution, 33 (2). pp. 456-471. doi:10.1093/molbev/msv237

Z

Zabala, Daniel, Cartwright, Joshua W., Roberts, Douglas M., Law, Brian J. C., Song, Lijiang, Samborskyy, Markiyan, Leadlay, P. F., Micklefield, Jason and Challis, Gregory L. (2016) A flavin-dependent decarboxylase–dehydrogenase–monooxygenase assembles the warhead of α,β-Epoxyketone proteasome inhibitors. Journal of the American Chemical Society, 138 (13). pp. 4342-4345. doi:10.1021/jacs.6b01619

Zanardini, E., May, Eric, Inkpen, Robert, Cappitelli, Francesca, Murrell, J. C. (J. Colin) and Purdy, Kevin J. (2016) Diversity of archaeal and bacterial communities on exfoliated sandstone from Portchester Castle (UK). International Biodeterioration & Biodegradation , 109 . pp. 78-87. doi:10.1016/j.ibiod.2015.12.021

Zhou, Shanshan, Alkhalaf, Lona M., Emmanuel de los Santos, L. C. and Challis, Gregory L. (2016) Mechanistic insights into class B radical-S-adenosylmethionine methylases : ubiquitous tailoring enzymes in natural product biosynthesis. Current Opinion in Chemical Biology, 35 . pp. 73-79. doi:10.1016/j.cbpa.2016.08.021

Zhu, Yijun , Ksibe, Amira Z., Schäfer, Hendrik, Blindauer, Claudia A., Bugg, Tim and Chen, Yin (2016) O2-independent demethylation of trimethylamine N-oxide by Tdm of Methylocella silvestris. FEBS Journal, 283 (21). pp. 3979-3993. doi:10.1111/febs.13902

Zhu, Z-X., Yu, Z-M., Taylor, Jemma L., Wu, Y-H. and Ni, J. (2016) The application of yeast hybrid systems in protein interaction analysis. Molecular Biology, 50 (5). pp. 663-670. doi:10.7868/S0026898416050189

Á

Álvarez-Martín, Alba, Hilton, Sally, Bending, G. D., Rodríguez-Cruz, M. Sonia and Sánchez-Martín, M. Jesús (2016) Changes in activity and structure of the soil microbial community after application of azoxystrobin or pirimicarb and an organic amendment to an agricultural soil. Applied Soil Ecology, 106 . pp. 47-57. doi:10.1016/j.apsoil.2016.05.005

Ü

Üstün, Suayib, Sheikh, Arsheed, Gimenez-Ibanez , Selena, Jones, Alexandra M., Ntoukakis, Vardis and Börnke, Frederik (2016) The proteasome acts as a hub for plant immunity and is targeted by Pseudomonas type-III effectors. Plant Physiology, 172 (3). 1941-1958 . doi:10.​1104/​pp.​16.​00808