Journal Article

(2019) Sharing data from molecular simulations. Journal of Chemical Information and Modeling, 59 (10). pp. 4093-4099. doi:10.1021/acs.jcim.9b00665

Adams, Sally, Pathak, Prachi, Shao, Hongguang, Lok, James B. and Pires-da Silva, André Francisco (2019) Liposome-based transfection enhances RNAi and CRISPR-1 mediated mutagenesis in non-model nematode systems. Scientific Reports, 9 . 483. doi:10.1038/s41598-018-37036-1

Agom, David A., Poole, Helen, Allen, Stuart C. H., Onyeka, Tonia C. and Ominyi, Jude (2019) Understanding the Organization of Hospital-Based Palliative Care in a Nigerian Hospital: An Ethnographic Study. Indian Journal of Palliative Care .

Agoti, Charles N., Phan, My V. T., Munywoki, Patrick K., Githinji, George, Medley, Graham, Cane, Patricia A., Kellam, Paul, Cotton, Matthew and Nokes, D. James (2019) Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant. Scientific Reports, 9 . 10076. doi:10.1038/s41598-019-46509-w

Ailloud, Florent, Didelot, Xavier, Woltemate, Sabrina, Pfaffinger, Gudrun, Overmann, Jörg, Bader, Ruth Christiane, Schulz, Christian, Malfertheiner, Peter and Suerbaum, Sebastian (2019) Within-host evolution of Helicobacter pylori shaped by niche-specific adaptation, intragastric migrations and selective sweeps. Nature Communications, 10 (1). 2273 . doi:10.1038/s41467-019-10050-1

Alberti, Fabrizio and Corre, Christophe (2019) Editing streptomycete genomes in the CRISPR/Cas9 age. Natural Product Reports, 36 (9). pp. 1237-1248. doi:10.1039/c8np00081f

Alberti, Fabrizio, Leng, Daniel J., Wilkening, Ina, Song, Lijiang, Tosin, Manuela and Corre, Christophe (2019) Triggering the expression of a silent gene cluster from genetically intractable bacteria results in scleric acid discovery. Chemical Science, 10 (2). pp. 453-463. doi:10.1039/C8SC03814G

Allaby, Robin G., Ware, Roselyn and Kistler, Logan (2019) A re-evaluation of the domestication bottleneck from archaeogenomic evidence. Evolutionary Applications, 12 (1). pp. 29-37. doi:10.1111/eva.12680

An, Hong, Qi, Xinshuai, Gaynor, Michelle L., Hao, Yue, Gebken, Sarah C., Mabry, Makenzie E., McAlvay, Alex C., Teakle, Graham R., Conant, Gavin C., Barker, Michael S., Fu, Tingdong, Yi, Bin and Pires, J. Chris (2019) Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. Nature Communications, 10 (1). 2878. doi:10.1038/s41467-019-10757-1

Anonye, Blessing O., Hassall, Jack, Patient, Jamie, Detamornrat, Usanee, Aladdad, Afnan M., Schüller, Stephanie, Rose, Felicity R. A. J. and Unnikrishnan, Meera (2019) Probing Clostridium difficile infection in complex human gut cellular models. Frontiers in Microbiology, 10 . 879. doi:10.3389/fmicb.2019.00879

Ar Rashid, Md. Harun, Cheng, Wei and Thomas, Brian (2019) Temporal and spatial expression of Arabidopsis gene homologs control daylength adaptation and bulb formation in onion (Allium cepa L.). Scientific Reports, 9 . 14629 . doi:10.1038/s41598-019-51262-1

Armitage, Andrew D., Taylor, Andrew, Hulin, Michelle T., Jackson, Alison C., Harrison, Richard J., Clarkson, John P. and Rokas, Antonis (2019) Draft genome sequence of an onion basal rot isolate of fusarium proliferatum. Microbiology Resource Announcements, 8 (1). e01385. doi:10.1128/MRA.01385-18

Arzt, Jonathan, Branan, Matthew A., Delgado, Amy H., Yadav, Shankar, Moreno-Torres, Karla I., Tildesley, Michael J. and Stenfeldt, Carolina (2019) Quantitative impacts of incubation phase transmission of foot-and-mouth disease virus. Scientific Reports, 9 (1). 2707. doi:10.1038/s41598-019-39029-0

Asare‐Bediako, Elvis, Jones, Julie E. , Hambidge, Angela, Stevenson, Mark, Mead, Andrew, Jenner, Carol E. and Walsh, John A. (2019) The incidence of Turnip yellows virus in oilseed rape crops (Brassica napus L.) in three different regions of England over three consecutive growing seasons and the relationship with the abundance of flying Myzus persicae. Annals of Applied Biology . doi:10.1111/aab.12565 (In Press)

(2019) Synthesis and testing of novel alternative oxidase (AOX) inhibitors with antifungal activity against Moniliophthora perniciosa (Stahel), the causal agent of witches' broom disease of cocoa, and other phytopathogens. Pest Management Science , 75 (5). pp. 1295-1303. doi:10.1002/ps.5243

Bartho, Joseph D., Demitri, Nicola, Bellini, Dom, Flachowsky, Henryk, Peil, Andreas, Walsh, Martin A. and Benini, Stefano (2019) The structure of Erwinia amylovora AvrRpt2 provides insight into protein maturation and induced resistance to fire blight by Malus × robusta 5. Journal of Structural Biology, 206 (2). pp. 233-242. doi:10.1016/j.jsb.2019.03.010

Bassel, George (2019) Multicellular systems biology : quantifying cellular patterning and function in plant organs using network science. Molecular Plant, 12 (6). pp. 731-742. doi:10.1016/j.molp.2019.02.004

Beal, Dave M., Bastow, Emma L., Staniforth, Gemma L., von der Haar, Tobias, Freedman, Robert B. and Tuite, Mick F. (2019) Quantitative analyses of the yeast oxidative protein folding pathway in vitro and in vivo. Antioxidants & Redox Signaling . doi:10.1089/ars.2018.7615

Beechler, B. R., Boersma, Kate S., Buss, Peter E., Coon, Courtney A. C., Gorsich, Erin E., Henrichs, Brian S., Siepielski, Adam M., Spaan, Johannie M., Spaan, Robert S., Ezenwa, Vanessa O. and Jolles, Anna E. (2019) Bovine tuberculosis disturbs parasite functional trait composition in African buffalo. Proceedings of the National Academy of Sciences of the United States of America, 116 (29). pp. 14645-14650. doi:10.1073/pnas.1903674116 (In Press)

Beentjes, C.H.L., Taylor-King, J.P., Bayani, A., Davis, C.N., Dunster, J.L., Jabbari, S., Mirams, G.R., Jenkinson, C., Kilby, M.D., Hewison, M. and Tamblyn, J.A. (2019) Defining vitamin D status using multi-metabolite mathematical modelling: A pregnancy perspective. The Journal of Steroid Biochemistry and Molecular Biology, 190 . pp. 152-160. doi:10.1016/j.jsbmb.2019.03.024

Bella, P., Moretti, C., Licciardello, G., Strano, C. P., Pulvirenti, A., Alaimo, S., Zaccardelli, M., Branca, F., Buonaurio, R., Vicente, J. G. and Catara, V. (2019) Multilocus sequence typing analysis of Italian Xanthomonas campestris pv. campestris strains suggests the evolution of local endemic populations of the pathogen and does not correlate with race distribution. Plant Pathology, 68 (2). pp. 278-287. doi:10.1111/ppa.12946

Bellini, Dom, Koekemoer, Lizbé, Newman, Hector and Dowson, Christopher G. (2019) Novel and improved crystal structures of H. influenzae, E. coli and P. aeruginosa penicillin-binding protein 3 (PBP3) and N. gonorrhoeae PBP2 : toward a better understanding of β-Lactam target-mediated resistance. Journal of Molecular Biology, 431 (18). pp. 3501-3519. doi:10.1016/j.jmb.2019.07.010

Benton, Matthew Alan, Frey, Nadine, Nunes da Fonseca, Rodrigo, von Levetzow, Cornelia, Stappert, Dominik, Hakeemi, Muhammad Salim, Conrads, Kai H., Pechmann, Matthias, Panfilio, Kristen A., Lynch, Jeremy A. and Roth, Siegfried (2019) Fog signaling has diverse roles in epithelial morphogenesis in insects. eLife, 8 . e47346. doi:10.7554/elife.47346

Bianchet, Chantal, Wong, Aloysius, Quaglia, Mara, Alqurashi, May, Gehring, Chris, Ntoukakis, Vardis and Pasqualini, Stefania (2019) An Arabidopsis thaliana leucine-rich repeat protein harbors an adenylyl cyclase catalytic center and affects responses to pathogens. Journal of Plant Physiology, 232 . pp. 12-22. doi:10.1016/j.jplph.2018.10.025

Boardman, Felicity K., Hale, Rachel, Gohel, Raksha and Young, Philip J. (2019) Prevention of lives affected by haemophilia : a mixed methods study of the views of adults with haemophilia and their families towards genetic screening. Molecular Genetics and Genomic Medicine . e618. doi:10.1002/mgg3.618 (In Press)

Boltze, Johannes, Ferrara, Fabienne, Hainsworth, Atticus H., Bridges, Leslie R., Zille, Marietta, Lobsien, Donald, Barthel, Henryk, McLeod, Damian D., Gräßer, Felix, Pietsch, Sören, Schatzl, Ann-Kathrin, Dreyer, Antje Y. and Nitzsche, Björn (2019) Lesional and perilesional tissue characterization by automated image processing in a novel gyrencephalic animal model of peracute intracerebral hemorrhage. Journal of Cerebral Blood Flow & Metabolism, 39 (12). pp. 2521-2535. doi:10.1177/0271678X18802119

(2019) Stem cells as an emerging paradigm in stroke 4 : advancing and accelerating preclinical research. Stroke, 50 (11). pp. 3299-3306. doi:10.1161/STROKEAHA.119.025436

Borsetto, Chiara, Amos, Gregory C. A., da Rocha, Ulisses Nunes, Mitchell, Alex L., Finn, Robert D., Laidi, Rabah Forar, Vallin, Carlos, Pearce, David A., Newsham, Kevin K. and Wellington, E. M. H. (2019) Microbial community drivers of PK/NRP gene diversity in selected global soils. Microbiome, 7 (1). 78. doi:10.1186/s40168-019-0692-8

Breeze, Emily (2019) 97 Shades of Gray: Genetic Interactions of the Gray Mold, Botrytis cinerea, with Wild and Domesticated Tomato. The Plant Cell, 31 (2). pp. 280-281. doi:10.1105/tpc.19.00030

Breeze, Emily (2019) Master MYCs: MYC2, the Jasmonate Signaling “Master Switch”. The Plant Cell, 31 (1). pp. 9-10. doi:10.1105/tpc.19.00004

Brockhurst, Michael A., Harrison, Freya, Veening, Jan-Willem , Harrison, Ellie , Blackwell, Grace , Iqbal , Zamin and Maclean , Craig (2019) Assessing evolutionary risks of resistance for new antimicrobial therapies. Nature Ecology and Evolution, 3 . pp. 515-517. doi:10.1038/s41559-019-0854-x

Buckingham-Jeffery, Elizabeth, Hill, Edward M., Datta, Samik, Dilger, Erin and Courtenay, Orin (2019) Spatio-temporal modelling of Leishmania infantum infection among domestic dogs : a simulation study and sensitivity analysis applied to rural Brazil. Parasites & Vectors, 12 (1). 215. doi:10.1186/s13071-019-3430-y

(2019) The structural basis of lipid scrambling and inactivation in the endoplasmic reticulum scramblase TMEM16K. Nature Communications, 10 (1). 3956 . doi:10.1038/s41467-019-11753-1

Caffalette, Christopher A., Corey, Robin A., Sansom, Mark S. P., Stansfeld, Phillip J. and Zimmer, Jochen (2019) A lipid gating mechanism for the channel-forming O antigen ABC transporter. Nature Communications, 10 (1). 824. doi:10.1038/s41467-019-08646-8

Cain, Ricky, Salimraj, Ramya, Punekar, Avinash S., Bellini, Dom, Fishwick, Colin W. G., Czaplewski, Lloyd, Scott, David J., Harris, Gemma, Dowson, Christopher G., Lloyd, Adrian J. and Roper, David I. (2019) Structure-guided enhancement of selectivity of chemical probe inhibitors targeting bacterial seryl-tRNA synthetase. Journal of Medicinal Chemistry, 62 (21). pp. 9703-9717. doi:10.1021/acs.jmedchem.9b01131

Cama, Jehangir, Henney, Abby Mae and Winterhalter, Mathias (2019) Breaching the barrier : quantifying antibiotic permeability across gram-negative bacterial membranes. Journal of Molecular Biology . doi:10.1016/j.jmb.2019.03.031

Campagnolo, Alberto, Connelly, Erin and Wacha, Heather (2019) Labeculæ Vivæ : building a reference library of stains for medieval and early modern manuscripts. Manuscript Studies: A Journal of the Schoenberg Institute for Manuscript Studies, 4 (2). pp. 401-416. doi:10.1353/mns.2019.0018

Castillo-Lorenzo, E., Finch-Savage, William E., Seal, C. E. and Pritchard, H. W. (2019) Adaptive significance of functional germination traits in crop wild relatives of Brassica. Agricultural and Forest Meteorology, 264 . pp. 343-350. doi:10.1016/j.agrformet.2018.10.014

Castillo-Lorenzo, E., Pritchard, Hugh W., Finch-Savage, William E. and Seal, Charlotte E. (2019) Comparison of seed and seedling functional traits in native Helianthus species and the crop H. annuus ( sunflower). Plant Biology, 21 (3). pp. 533-543. doi:10.1111/plb.12928

Cetecioglu, Zeynep, Dolfing, Jan, Taylor, Jessica, Purdy, Kevin J. and Eyice, Özge (2019) COD/sulfate ratio does not affect the methane yield and microbial diversity in anaerobic digesters. Water Research, 155 . pp. 444-454. doi:10.1016/j.watres.2019.02.038

Cevik, Volkan, Boutrot, Freddy, Apel, Wiebke, Robert-Seilaniantz, Alexandre, Furzer, Oliver J., Redkar, Amey, Castel, Baptiste, Kover, Paula, Prince, David C., Holub, E. B. and Jones, Jonathan D. G. (2019) Transgressive segregation reveals mechanisms of Arabidopsis immunity to Brassica-infecting races of white rust (Albugo candida). Proceedings of the National Academy of Sciences, 116 (7). pp. 2767-2773. doi:10.1073/pnas.1812911116

Chaiban, Celia, Biscio, Christophe, Thanapongtharm, Weerapong, Tildesley, Michael J., Xiao, Xiangming, Robinson, Timothy P., Vanwambeke, Sophie O. and Gilbert, Marius (2019) Point pattern simulation modelling of extensive and intensive chicken farming in Thailand : accounting for clustering and landscape characteristics. Agricultural Systems, 173 . pp. 335-344. doi:10.1016/j.agsy.2019.03.004

Chandler, Dave, Cooper, Emily and Prince, Gillian (2019) Are there risks to wild European bumble bees from using commercial stocks of domesticated Bombus terrestris for crop pollination? Journal of Apicultural Research . pp. 1-17. doi:10.1080/00218839.2019.1637238

Chattaway, Marie Anne, Chandra, Nastassya, Painset, Anaïs, Shah, Victoria, Lamb, Peter, Acheampong, Elsie, Lo, Janice, Patel, Bharat, Larkin, Lesley, Sergeant, Martin J., Cormican, Martin, Litrup, Eva and Crook, Paul (2019) Genomic approaches used to investigate an atypical outbreak of Salmonella Adjame. Microbial Genomics, 5 (1). doi:10.1099/mgen.0.000248

Chen, Jing, Wade, Matthew J., Dolfing, Jan and Soyer, Orkun S. (2019) Increasing sulfate levels show a differential impact on synthetic communities comprising different methanogens and a sulfate reducer. Journal of The Royal Society Interface, 16 (154). 20190129. doi:10.1098/rsif.2019.0129

Chen, Xu (Researcher in statistics), Formisano, Elia, Blokland, Gabriëlla A. M., Strike, Lachlan T., McMahon, Katie L., Zubicaray, Greig I., Thompson, Paul M., Wright, Margaret J., Winkler, Anderson M., Ge, Tian and Nichols, Thomas E. (2019) Accelerated estimation and permutation inference for ACE modeling. Human Brain Mapping . doi:10.1002/hbm.24611

Chen, Yin and Schäfer, Hendrik (2019) Towards a systematic understanding of structure–function relationship of dimethylsulfoniopropionate‐catabolizing enzymes. Molecular Microbiology, 111 (6). pp. 1399-1403. doi:10.1111/mmi.14230 (In Press)

Clifton, Rachel, Giebel, Katharina, Liu, Nicola, Purdy, Kevin J. and Green, Laura E. (2019) Sites of persistence of Fusobacterium necrophorum and Dichelobacter nodosus: a paradigm shift in understanding the epidemiology of footrot in sheep. Scientific Reports, 9 (1). 14429. doi:10.1038/s41598-019-50822-9

Clifton, Rachel, Reeves, Michelle, Kaler, Jasmeet and Green, Laura E. (2019) Best practice versus farm practice : perspectives of lecturers and students at agricultural colleges in England on management of lameness in sheep. Journal of Rural Studies . doi:10.1016/j.jrurstud.2019.11.014 (In Press)

Collyer, Benjamin S., Turner, Hugo C., Hollingsworth, T. Déirdre and Keeling, Matthew James (2019) Vaccination or mass drug administration against schistosomiasis : a hypothetical cost-effectiveness modelling comparison. Parasites & Vectors, 12 (1). 499. doi:10.1186/s13071-019-3749-4

Cook, Jonathan P., de Wolf, Elizabeth and Dale, Nicholas (2019) Cx26 keratitis ichthyosis deafness syndrome mutations trigger alternative splicing of Cx26 to prevent expression and cause toxicity in vitro. Royal Society Open Science , 6 (8). 191128. doi:10.1098/rsos.191128

Corey, Robin A., Vickery, Owen N., Sansom, Mark S. P. and Stansfeld, Phillip J. (2019) Insights into membrane protein–lipid interactions from free energy calculations. Journal of Chemical Theory and Computation, 15 (10). pp. 5727-5736. doi:10.1021/acs.jctc.9b00548

Courtenay, Orin, Bazmani, Ahad, Parvizi, Parviz, Ready, Paul D. and Cameron, Mary M. (2019) Insecticide–impregnated dog collars reduce infantile clinical visceral leishmaniasis under operational conditions in NW Iran : a community–wide cluster randomised trial. PLoS Neglected Tropical Diseases, 13 (3). e0007193. doi:10.1371/journal.pntd.0007193

Courtenay, Orin, Dilger, Erin, Calvo-Bado, Leo A., Kravar-Garde, Lidija, Carter, Vicky, Bell, Melissa J., Alves, Graziella B. , Gonçalves, Raquel, Makhdoomi, Muhammad M., González, Mikel A., Nunes, Caris M., Bray, Daniel P., Brazil, Reginaldo P. and Hamilton, James G. C. (2019) Sand fly synthetic sex-aggregation pheromone co-located with insecticide reduces the incidence of infection in the canine reservoir of visceral leishmaniasis : a stratified cluster randomised trial. PLoS Neglected Tropical Diseases, 13 (10). e0007767. doi:10.1371/journal.pntd.0007767

Criscuolo, Alexis, Issenhuth-Jeanjean, Sylvie, Didelot, Xavier, Thorell, Kaisa, Hale, James, Parkhill, Julian, Thomson, Nicholas R., Weill, François-Xavier, Falush, Daniel and Brisse, Sylvain (2019) The speciation and hybridization history of the genus Salmonella. Microbial Genomics, 5 (8). doi:10.1099/mgen.0.000284

Cui, Li‐li, Golubczyk, Dominika, Tolppanen, Anna‐Maija, Boltze, Johannes and Jolkkonen, Jukka (2019) Cell therapy for ischemic stroke : are differences in preclinical and clinical study design responsible for the translational loss of efficacy? Annals of Neurology, 86 (1). pp. 5-16. doi:10.1002/ana.25493

Cummings, Matthew, Peters, Anna D. , Whitehead, George F. S. , Menon, Binuraj R. K., Micklefield, Jason and Webb, Simon J. (2019) Assembling a plug-and-play production line for combinatorial biosynthesis of aromatic polyketides in Escherichia coli. PLoS Biology, 17 (7). e3000347. doi:10.1371/journal.pbio

Córdova-Rivas, Sergio, Fraire-Soto, Ixamail, Mercado-Casas Torres, Andrea, Servín-González, Luis, Granados-López, Angelica, López-Hernández, Yamilé, Reyes-Estrada, Claudia, Gutiérrez-Hernández, Rosalinda, Castañeda-Delgado, Julio, Ramírez-Hernández, Leticia, Varela-Silva, José and López, Jesús (2019) 5p and 3p strands of miR-34 family members have differential effects in cell proliferation, migration, and invasion in cervical cancer cells. International Journal of Molecular Sciences, 20 (3). p. 545. doi:10.3390/ijms20030545

Dale, Nicholas, Tian, Faming, Sagoo, Ravjit, Phillips, Norman, Imray, C. (Chris) and Roffe, Christine (2019) Point-of-care measurements reveal release of purines into venous blood of stroke patients. Purinergic Signalling . doi:10.1007/s11302-019-09647-4 (In Press)

Davies, Laura R., Hull, Richard, Moss, Stephen and Neve, Paul (2019) The first cases of evolving glyphosate resistance in UK poverty brome (Bromus sterilis) populations. Weed Science, 67 (1). pp. 41-47. doi:10.1017/wsc.2018.61

Davis, Christopher N., Rock, Kat S., Mwamba Miaka, Erick and Keeling, Matthew James (2019) Village-scale persistence and elimination of gambiense human African trypanosomiasis. PLOS Neglected Tropical Diseases, 13 (10). e0007838. doi:10.1371/journal.pntd.0007838

Demurtas, Olivia Costantina, de Brito Francisco, Rita, Diretto, Gianfranco, Ferrante, Paola, Frusciante, Sarah, Pietrella, Marco, Aprea, Giuseppe, Borghi, Lorenzo, Feeney, Mistianne, Frigerio, Lorenzo, Coricello, Adriana, Costa, Giosuè, Alcaro, Stefano, Martinoia, Enrico and Giuliano, Giovanni (2019) ABCC transporters mediate the vacuolar accumulation of crocins in saffron stigmas. Plant Cell, 31 (11). pp. 2789-2804. doi:10.1105/tpc.19.00193

Didelot, Xavier and Pouwels, Koen B. (2019) Machine-learning-assisted selection of antibiotic prescription. Nature Medicine, 25 (7). pp. 1033-1034. doi:10.1038/s41591-019-0517-0

Dingle, Kate E., Didelot, Xavier, Quan, T. Phuong, Eyre, David W., Stoesser, Nicole, Marwick, Charis A., Coia, John, Brown, Derek, Buchanan, Sarah, Ijaz, Umer Z., Goswami, Cosmika, Douce, Gill, Fawley, Warren N., Wilcox, Mark H., Peto, Timothy E. A., Walker, A. Sarah, Crook, Derrick W. and Keim, Paul (2019) A role for tetracycline selection in recent evolution of agriculture-associated clostridium difficile PCR ribotype 078. mBio, 10 (2). pp. 1-19. e02790. doi:10.1128/mBio.02790-18

Dorp, Lucy van, Wang, Qi, Shaw, Liam P., Acman, Mislav, Brynildsrud, Ola B., Eldholm, Vegard, Wang, Ruobing, Gao, Hua, Yin, Yuyao, Chen, Hongbin, Ding, Chuling, Farrer, Rhys A., Didelot, Xavier, Balloux, Francois and Wang, Hui (2019) Rapid phenotypic evolution in multidrug-resistant Klebsiella pneumoniae hospital outbreak strains. Microbial Genomics . doi:10.1099/mgen.0.000263 (In Press)

Dospinescu, Valentin-Mihai, Nijjar, Sarbjit, Spanos, Fokion, Cook, Jonathan P., de Wolf, Elizabeth, Biscotti, Maria Assunta, Gerdol, Marco and Dale, Nicholas (2019) Structural determinants of CO2-sensitivity in the β connexin family suggested by evolutionary analysis. Communications Biology, 2 (1). 331 . doi:10.1038/s42003-019-0576-2

Drenichev, Mikhail S., Bennett, Mark, Novikov, Roman A., Mansfield, John, Smirnoff, Nick, Grant, Murray R. and Mikhailov, Sergey N. (2019) A role for 3′-O-β-D-ribofuranosyladenosine in altering plant immunity. Phytochemistry Letters, 157 . pp. 128-134. doi:10.1016/j.phytochem.2018.10.016

Dryer, Nigel P., Shahrazaie, Vahid and Hebenstreit, Daniel (2019) LiBiNorm : an htseq-count analogue with improved normalisation of Smart-seq2 data and library preparation diagnostics. PeerJ, 7 . e6222. doi:10.7717/peerj.6222

Duraffourd, Celine, Huckstepp, Robert T. R., Braren, Ingke, Fernandes, Cathy, Brock, Olivier, Delogu, Alessio, Prysyazhna, Oleksandra, Burgoyne, Joseph and Eaton, Philip (2019) PKG1α oxidation negatively regulates food seeking behaviour and reward. Redox Biology, 21 . 101077. doi:10.1016/j.redox.2018.101077

Duran-Nebreda, Salva and Bassel, George (2019) Plant behaviour in response to the environment : information processing in the solid state. Philosophical Transactions of the Royal Society B: Biological Sciences, 374 (1774). 20180370. doi:10.1098/rstb.2018.0370

Dyson, Louise, Mooring, Eric Q., Holmes, Alexander, Tildesley, Michael J. and Marks, Michael (2019) Insights from quantitative and mathematical modelling on the proposed 2030 goals for yaws. Gates Open Research, 3 . 1576. doi:doi:10.12688/gatesopenres.13078.1 (Submitted)

Engesser, Sabrina, Holub, Jennifer L., O’Neill, Louis G., Russell, Andrew F. and Townsend, Simon W. (2019) Chestnut-crowned babbler calls are composed of meaningless shared building blocks. Proceedings of the National Academy of Sciences, 116 (39). pp. 19579-19584. doi:10.1073/pnas.1819513116

Erni-Cassola, Gabriel, Zadjelovic, Vinko, Gibson, Matthew I. and Christie-Oleza, Joseph Alexander (2019) Distribution of plastic polymer types in the marine environment ; a meta-analysis. Journal of Hazardous Materials, 369 . pp. 691-698. doi:10.1016/j.jhazmat.2019.02.067

Eyre, David W., Didelot, Xavier, Buckley, Anthony M., Freeman, Jane, Moura, Ines B., Crook, Derrick W., Peto, Tim E.A., Walker, A. Sarah, Wilcox, Mark H. and Dingle, Kate E. (2019) Clostridium difficile trehalose metabolism variants are common and not associated with adverse patient outcomes when variably present in the same lineage. EBioMedicine, 43 . pp. 347-355. doi:10.1016/j.ebiom.2019.04.038

Feng, Song and Soyer, Orkun S. (2019) In silico evolution of signaling networks using rule-based models : bistable response dynamics. Methods in molecular biology, 1945 . pp. 315-339. doi:10.1007/978-1-4939-9102-0_15

Fenn, Jonathan S., Nepravishta, Ridvan, Guy, Collette S., Harrison, James, Angulo, Jesus, Cameron, Alexander and Fullam, Elizabeth (2019) Structural basis of glycerophosphodiester recognition by the mycobacterium tuberculosis substrate-binding protein UgpB. ACS Chemical Biology, 14 (9). pp. 1879-1887. doi:10.1021/acschembio.9b00204

Ferguson, Eamonn, Quigley, Erin, Powell, Georgia, Stewart, Liam, Harrison, Freya and Tallentire, Holly (2019) To help or punish in the face of unfairness : men and women prefer mutually-beneficial strategies over punishment in a sexual selection context. Royal Society Open Science , 6 (9). 181441. doi:10.1098/rsos.181441

Fernie, Alisdair R. and Gutierrez-Marcos, José F. (2019) From genome to phenome: genome-wide association studies and other approaches that bridge the genotype to phenotype gap. The Plant Journal, 97 (1). pp. 5-7. doi:10.1111/tpj.14219

Ferrari, Matthew (Matt), Whittles, Lilith K., White, Peter J. and Didelot, Xavier (2019) A dynamic power-law sexual network model of gonorrhoea outbreaks. PLoS Computational Biology, 15 (3). e1006748. doi:10.1371/journal.pcbi.1006748

Footitt, Steven, Clewes, Rachel, Feeney, Mistianne, Finch-Savage, William E. and Frigerio, Lorenzo (2019) Aquaporins influence seed dormancy and germination in response to stress. Plant, Cell & Environment, 42 (8). pp. 2325-2339. doi:10.1111/pce.13561 (In Press)

Footitt, Steven, Walley, Peter G., Lynn, James R. , Hambidge, A. J. (Angela J.), Penfield, Steven and Finch-Savage, William E. (2019) Trait analysis reveals DOG1 determines initial depth of seed dormancy, but not changes during dormancy cycling that result in seedling emergence timing. New Phytologist . doi:10.1111/nph.16081 (In Press)

Frenguelli, Bruno G. (2019) The purine salvage pathway and the restoration of cerebral ATP : implications for brain slice physiology and brain injury. Neurochemical Research, 44 (3). pp. 661-675. doi:10.1007/s11064-017-2386-6

Frerichs, Anneke, Engelhorn, Julia, Altmüller, Janine, Gutierrez-Marcos, José F. and Werr, Wolfgang (2019) Specific chromatin changes mark lateral organ founder cells in the Arabidopsis inflorescence meristem. Journal of Experimental Botany, 70 (15). pp. 3867-3879. doi:10.1093/jxb/erz181

Galizi, Roberto and Jaramillo, Alfonso (2019) Engineering CRISPR guide RNA riboswitches for in vivo applications. Current Opinion in Biotechnology, 55 . pp. 103-113. doi:10.1016/j.copbio.2018.08.007

Geoffriau, E., Charpentier, T., Huet, S., Hägnefelt, A., Lopes, V., Nothnagel, T., Lohwasser, U., Mallor Gimenez, C. and Allender, Charlotte J. (2019) CarrotDiverse : understanding variation in a wild relative of carrot. Acta Horticulturae (1264). pp. 151-156. doi:10.17660/ActaHortic.2019.1264.18

George, David, Port, Gordon and Collier, Rosemary (2019) Living on the edge : using and improving trap crops for flea beetle management in small-scale cropping systems. Insects, 10 (9). 286. doi:10.3390/insects10090286

Gohel, Raksha, Kournoutis, Athanasios, Petridi, Stavroula and Nezis, Ioannis P. (2019) Molecular mechanisms of selective autophagy in Drosophila. International Review of Cell and Molecular Biology . doi:10.1016/bs.ircmb.2019.08.003 (In Press)

González, Mikel A., Bell, Melissa J., Bernhardt, Scott A., Brazil, Reginaldo P., Dilger, Erin, Courtenay, Orin and Hamilton, James G. C. (2019) Susceptibility of wild-caught Lutzomyia longipalpis (Diptera: Psychodidae) sand flies to insecticide after an extended period of exposure in western São Paulo, Brazil. Parasites & Vectors, 12 (1). 110. doi:10.1186/s13071-019-3364-4

Gorsich, Erin E., Beechler, Brianna R., van Bodegom, Peter M., Govender, Danny, Guarido, Milehna, Venter, Marietjie and Schrama, Maarten (2019) A comparative assessment of adult mosquito trapping methods to estimate spatial patterns of abundance and community composition in southern Africa. Parasites & Vectors, 12 . 462 . doi:10.1186/s13071-019-3733-z

Gorsich, Erin E., Miller, Ryan S., Mask, Holly M., Hallman, Clayton, Portacci, Katie and Webb, Colleen T. (2019) Spatio-temporal patterns and characteristics of swine shipments in the U.S. based on Interstate Certificates of Veterinary Inspection. Scientific Reports, 9 (1). 3915 . doi:10.1038/s41598-019-40556-z

Groves, Norman R., McKenna, Joseph F., Evans, David E., Graumann, Katja and Meier, Iris (2019) A nuclear localization signal targets tail-anchored membrane proteins to the inner nuclear envelope in plants. Journal of Cell Science, 132 (7). jcs226134. doi:10.1242/jcs.226134

Gufler, Hubert, Niefeldt, Sabine, Boltze, Johannes, Prietz, Stephanie, Klopsch, Christian, Wagner, Sabine, Vollmar, Brigitte and Yerebakan, Can (2019) Right ventricular function after pulmonary artery banding : adaptive processes assessed by CMR and conductance catheter measurements in sheep. Journal of Cardiovascular Translational Research, 12 (5). pp. 459-466. doi:10.1007/s12265-019-09881-6

Gumber, Hardeep K., McKenna, Joseph F., Estrada, Amado L., Tolmie, Andrea F., Graumann, Katja and Bass, Hank W. (2019) Identification and characterization of genes encoding the nuclear envelope LINC complex in the monocot species Zea mays. Journal of Cell Science, 132 (3). jcs221390. doi:10.1242/jcs.221390

Gumber, Hardeep K., McKenna, Joseph F., Tolmie, Andrea F., Jalovec, Alexis M., Kartick, Andre C., Graumann, Katja and Bass, Hank W. (2019) MLKS2 is an ARM domain and F-actin-associated KASH protein that functions in stomatal complex development and meiotic chromosome segregation. Nucleus, 10 (1). pp. 144-166. doi:10.1080/19491034.2019.1629795

Gunnarsson, Lina, Snape, Jason R., Verbruggen, Bas, Owen, Stewart F., Kristiansson, Erik, Margiotta-Casaluci, Luigi, Österlund, Tobias, Hutchinson, Kathryn, Leverett, Dean, Marks, Becky and Tyler, Charles R. (2019) Pharmacology beyond the patient – the environmental risks of human drugs. Environment International, 129 . pp. 320-332. doi:10.1016/j.envint.2019.04.075

Guy, Collette S., Gibson, Matthew I. and Fullam, Elizabeth (2019) Targeting extracellular glycans : tuning multimeric boronic acids for pathogen-selective killing of Mycobacterium tuberculosis. Chemical Science, 10 (23). 5935-5942 . doi:10.1039/C9SC00415G

Guy, Collette S., Murray, Kathryn, Gibson, Matthew I. and Fullam, Elizabeth (2019) Dimeric benzoboroxoles for targeted activity against Mycobacterium tuberculosis. Organic & Biomolecular Chemistry, 17 (43). pp. 9524-9528. doi:10.1039/C9OB02222H

Hartman, Sjon, Liu, Zeguang, van Veen, Hans, Vicente, Jorge, Reinen, Emilie, Martopawiro, Shanice, Zhang, Hongtao, van Dongen, Nienke, Bosman, Femke, Bassel, George, Visser, Eric J. W., Bailey-Serres, Julia, Theodoulou, Frederica L., Hebelstrup, Kim H., Gibbs, Daniel J., Holdsworth, Michael J., Sasidharan, Rashmi and Voesenek, Laurentius A. C. J. (2019) Ethylene-mediated nitric oxide depletion pre-adapts plants to hypoxia stress. Nature Communications, 10 (1). 4020 . doi:10.1038/s41467-019-12045-4

Hernandez-González, Miguel, Bravo-Plaza, Ignacio, de los Ríos, Vivian, Pinar, Mario, Pantazopoulou, Areti and Peñalva, Miguel A. (2019) COPI localizes to the early Golgi in Aspergillus nidulans. Fungal Genetics and Biology, 123 . pp. 78-86. doi:10.1016/j.fgb.2018.12.003

Herrmann, A. M., Cattaneo, G. F. M., Eiden, S. A., Wieser, M., Kellner, E., Maurer, C., Haberstroh, J., Mülling , C., Niesen, W. D., Urbach, H., Boltze, Johannes, Meckel, S. and Shah, M. J. (2019) Development of a routinely applicable imaging protocol for fast and precise middle cerebral artery occlusion assessment and perfusion deficit measure in an ovine stroke model : a case study. Frontiers in Neurology . (In Press)

Herrmann, Andrea M, Meckel, Stephan, Gounis, Matthew J, Kringe, Leona, Motschall, Edith, Mülling, Christoph and Boltze, Johannes (2019) Large animals in neurointerventional research : a systematic review on models, techniques and their application in endovascular procedures for stroke, aneurysms and vascular malformations. Journal of Cerebral Blood Flow & Metabolism, 39 (3). pp. 375-394. doi:10.1177/0271678X19827446

Hill, Edward M., Petrou, Stavros, de Lusignan, Simon, Yonova, Ivelina and Keeling, Matt J. (2019) Seasonal influenza : modelling approaches to capture immunity propagation. PLoS Computational Biology, 15 (10). e1007096. doi:10.1371/journal.pcbi.1007096

Hill, Emily, Hickman, Charlotte, Diez, Rebecca and Wall, Mark J. (2019) Role of A1 receptor-activated GIRK channels in the suppression of hippocampal seizure activity. Neuropharmacology . 107904. doi:10.1016/j.neuropharm.2019.107904 (In Press)

Hill, Emily, Karikaria, Thomas K., Moffat, Kevin G., Richardson, Magnus J. E. and Wall, Mark J. (2019) Introduction of tau oligomers into cortical neurons alters action potential dynamics and disrupts synaptic transmission and plasticity. eNeuro, 6 (5). 0166. doi:10.1523/ENEURO.0166-19.2019

Hilton, Joe and Keeling, Matthew James (2019) Incorporating household structure and demography into models of endemic disease. Journal of The Royal Society Interface, 16 (157). 20190317. doi:10.1098/rsif.2019.0317

Hind, Charlotte K., Dowson, Christopher G., Sutton, J. Mark, Jackson, Thomas, Clifford, Melanie, Garner, R. Colin and Czaplewski, Lloyd (2019) Evaluation of a library of FDA-approved drugs for their ability to potentiate antibiotics against multidrug resistant Gram-negative pathogens. Antimicrobial Agents and Chemotherapy, 63 . e00769. doi:10.1128/AAC.00769-19

Hockham, Carinna, Ekwattanakit, Supachai, Bhatt, Samir, Penman, Bridget S., Gupta, Sunetra, Viprakasit, Vip and Piel, Frédéric B (2019) Estimating the burden of α-thalassaemia in Thailand using a comprehensive prevalence database for Southeast Asia. eLife, 8 . e40580. doi:10.7554/eLife.40580

Hope, Emma C., Crump, Ron E., Hollingsworth, Deirdre, Smieszek, Timo, Robotham, Julie and Pouwels, Koen (2019) Identifying English practices that are high antibiotic prescribers accounting for comorbidities and other legitimate medical reasons for variation. eClinicalMedicine . doi:10.1016/j.eclinm.2018.12.003 (In Press)

Hopkins, Thomas, Gonçalves, Raquel, Mamani, Janet, Courtenay, Orin and Bern, Caryn (2019) Chagas disease in the Bolivian Chaco: Persistent transmission indicated by childhood seroscreening study. International Journal of Infectious Diseases, 86 . pp. 175-177. doi:10.1016/j.ijid.2019.07.020

Hu, Qingfeng, Yu, Yan, Gu, Dongshi, Xie, Li, Chen, Xingrou, Xu, Ning, Ruan, Jennifer Jin, Dowson, Christopher G. and Ruan, Benfang Helen (2019) Detection of “hidden” antimicrobial drug resistance. ACS Infectious Diseases, 5 (7). pp. 1252-1263. doi:10.1021/acsinfecdis.9b00132

Huckstepp, Robert T. R. (2019) Your input is a breath of fresh air! A chemosensory microcircuit of medullary raphe and RTN neurons. The Journal of Physiology . doi:10.1113/JP277972 (In Press)

Hyodo, Ayumi, Malghani, Saadatullah, Zhou, Yong, Mushinski, Ryan , Toyoda, Sakae, Yoshida, Naohiro, Boutton, Thomas W. and West, Jason B. (2019) Biochar amendment suppresses N 2 O emissions but has no impact on 15 N site preference in an anaerobic soil. Rapid Communications in Mass Spectrometry, 33 (2). pp. 165-175. doi:10.1002/rcm.8305

Ikhsan, Maulana, Palumbo, Alex, Rose, Dorothee , Zille, Marietta and Boltze, Johannes (2019) Neuronal stem cell-drug interactions : a systematic review and meta-analysis. Stem Cells Translational Medicine . (In Press)

Jackson, Matthew D. B., Duran-Nebreda, Salva, Kierzkowski, Daniel, Strauss, Soeren, Xu, Hao, Landrein, Benoit, Hamant, Olivier, Smith, Richard S., Johnston, Iain G. and Bassel, George (2019) Global topological order emerges through local mechanical control of cell divisions in the arabidopsis shoot apical meristem. Cell Systems, 8 (1). 53-65.e3. doi:10.1016/j.cels.2018.12.009

Jacomin, Anne-Claire, Geraki, Kalotina, Tjendana-Tjhin, Vindy, Collingwood, Joanna F. and Nezis, Ioannis P. (2019) Impact of autophagy and ageing on iron load and ferritin in Drosophila brain. Frontiers in Cell and Developmental Biology, 7 . 142 . doi:10.3389/fcell.2019.00142

Jacomin, Anne-Claire, Petridi, Stavroula, DiMonaco, Marisa, Jain, Ashish, Bhujabal, Zambarlal, Mulakkal, Nitha Charles, Palara, Anthimi, Powell, Emma L., Chung, Bonita, Zampronio, Cleidiane G., Jones, Alexandra M., Cameron, Alexander, Johansen, Terje and Nezis, Ioannis P. (2019) Atg8a interacts with transcription factor Sequoia to control the expression of autophagy genes in Drosophila. (In Press)

Jameson, Eleanor, Stephenson, Jason, Jones, Helen J., Millard, Andrew D., Kaster, K., Purdy, Kevin J., Airs, R., Murrell, J. C. (J. Colin) and Chen, Yin (2019) Deltaproteobacteria (Pelobacter) and Methanococcoides are responsible for choline-dependent methanogenesis in a coastal saltmarsh sediment. ISME Journal, 13 (2). pp. 277-289. doi:10.1038/s41396-018-0269-8

(2019) GLIM Criteria for the Diagnosis of Malnutrition: A Consensus Report From the Global Clinical Nutrition Community. Journal of Parenteral and Enteral Nutrition, 43 (1). pp. 32-40. doi:10.1002/jpen.1440

Ji, Xunming, Zhao, Wenbo, Boltze, Johannes, Li, Sijie, Meng, Ran, Wang, Yuan-Pang, Bix, Gregory J., Borlongan, Cesar V., Gidday, Jeffrey M., Koch, Sebastian, Quindry, John C., Ratan, Rajiv R., Veighey, Kristin, Xi, Guohua, Pignataro, Giuseppe, Hess, David C. and Hausenloy , Derek J. (2019) Clinical practice guidelines of remote ischemic conditioning for the management of cerebrovascular diseases. Conditioning Medicine, 2 (5). pp. 225-241.

Jones, Helen J., Kröber, Eileen, Stephenson, Jason, Mausz, Michaela A., Jameson, Eleanor, Millard, Andrew D., Purdy, Kevin J. and Chen, Yin (2019) A new family of uncultivated bacteria involved in methanogenesis from the ubiquitous osmolyte glycine betaine in coastal saltmarsh sediments. Microbiome, 7 . 120. doi:10.1186/s40168-019-0732-4 (In Press)

Jouet, Agathe, Saunders, Diane G. O., McMullan, Mark, Ward, Ben, Furzer, Oliver, Jupe, Florian, Cevik, Volkan, Hein, Ingo, Thilliez, Gaetan J. A., Holub, E. B., van Oosterhout, Cock and Jones, Jonathan D. G. (2019) Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field. New Phytologist, 221 (3). pp. 1529-1543. doi:10.1111/nph.15417

Kamau, E., Onyango, C. O., Otieno, G. P., Kiyuka, P. K., Agoti, C. N., Medley, G. F., Cane, P. A., Nokes, D. James and Munywoki, P. K. (2019) An intensive, active surveillance reveals continuous invasion and high diversity of rhinovirus in households. Journal of Infectious Diseases, 219 (7). pp. 1049-1057. doi:10.1093/infdis/jiy621

Kamau, Everlyn, Agoti, Charles N., Ngoi, Joyce M., de Laurent, Zaydah R., Gitonga, John, Cotten, Matthew, Phan, My V. T., Nokes, D. James, Delwart, Eric, Sanders, Eduard, Warimwe, George M. and Dunning Hotopp, Julie C. (2019) Complete genome sequences of dengue virus type 2 strains from Kilifi, Kenya. Microbiology Resource Announcements, 8 (4). e01566-18. doi:10.1128/MRA.01566-18

Kamau, Everlyn, Luka, Martha M., de Laurent, Zaydah R., Adema, Irene, Agoti, Charles N. and Nokes, D. James (2019) Genome sequences of human coronavirus OC43 and NL63, associated with respiratory infections in Kilifi, Kenya. Microbiology Resource Announcements, 8 (46). e00730-19. doi:10.1128/MRA.00730-19

Karikari, Thomas K., Nagel, David A., Grainger, Alastair, Clarke-Bland, Charlotte, Crowe, James, Hill, Eric J. and Moffat, Kevin G. (2019) Distinct conformations, aggregation and cellular internalization of different tau strains. Frontiers in Cellular Neuroscience, 13 . 296. doi:10.3389/fncel.2019.00296

Karikari, Thomas K., Nagel, David A., Grainger, Alastair, Clarke-Bland, Charlotte, Hill, Eric J. and Moffat, Kevin G. (2019) Preparation of stable tau oligomers for cellular and biochemical studies. Analytical Biochemistry, 566 . pp. 67-74. doi:10.1016/j.ab.2018.10.013

(2019) Effectiveness of monovalent rotavirus vaccine against hospitalization with acute rotavirus gastroenteritis in Kenyan children. Clinical Infectious Diseases . ciz664. doi:10.1093/cid/ciz664 (In Press)

Kim, Dae-Wi, Thawng, Cung Nawl, Lee, Kihyun, Wellington, E. M. H. and Cha, Chang-Jun (2019) A novel sulfonamide resistance mechanism by two-component flavin-dependent monooxygenase system in sulfonamide-degrading actinobacteria. Environment International, 127 . pp. 206-215. doi:10.1016/j.envint.2019.03.046

Kiti, Moses Chapa, Melegaro, Alessia, Cattuto, Ciro and Nokes, D. James (2019) Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors. Wellcome Open Research, 4 . p. 84. doi:10.12688/wellcomeopenres.15268.2

Kosol, Simone, Gallo, Angelo, Griffiths, Daniel, Valentic, Timothy R., Masschelein, Joleen, Jenner, Matthew, de los Santos, Emmanuel L. C., Manzi, Lucio, Sydor, Paulina K., Rea, Dean, Zhou, Shanshan, Füllöp, Vilmos, Oldham, Neil J., Tsai, Shiou-Chuan, Challis, Gregory L. and Lewandowski, Józef R. (2019) Structural basis for chain release from the enacyloxin polyketide synthase. Nature Chemistry, 11 . 913-923 . doi:10.1038/s41557-019-0335-5

Krol, Louie, Gorsich, Erin E., Hunting, Ellard R., Govender, Danny, van Bodegom, Peter M. and Schrama, Maarten (2019) Eutrophication governs predator-prey interactions and temperature effects in Aedes aegypti populations. Parasites & Vectors, 12 (1). 179. doi:10.1186/s13071-019-3431-x

Krol, Louie, Van der Hoorn, Berry, Gorsich, Erin E., Trimbos, Krijn, Bodegom, Peter M. van and Schrama, Maarten (2019) How does eDNA compare to traditional trapping? Detecting mosquito communities in South-African freshwater ponds. Frontiers in Ecology and Evolution, 7 . 260. doi:10.3389/fevo.2019.00260

Kröber, Eileen and Schäfer, Hendrik (2019) Identification of proteins and genes expressed by Methylophaga thiooxydans during growth on dimethylsulfide and their presence in other members of the genus. Frontiers in Microbiology, 10 . 1132. doi:10.3389/fmicb.2019.01132

Kubes, Martin and Napier, Richard (2019) Non-canonical auxin signalling : fast and curious. Journal of Experimental Botany . doi:10.1093/jxb/erz111 (In Press)

Kuru, Erkin, Radkov, Atanas, Meng, Xin, Egan, Alexander, Alvarez, Laura, Dowson, Amanda, Booher, Garrett, Breukink, Eefjan, Roper, David I., Cava, Felipe, Vollmer, Waldemar, Brun, Yves and VanNieuwenhze, Michael S. (2019) Mechanisms of incorporation for D-amino acid probes that target peptidoglycan biosynthesis. ACS Chemical Biology, 14 (12). pp. 2745-2756. doi:10.1021/acschembio.9b00664

Lagunas, Beatriz, Achom, Mingkee, Bonyadi-Pour, Roxanna, Pardal , Alonso Javier, Richmond, Bethany L., Sergaki, Chrysi, Vázquez, Saúl, Schäfer, Patrick, Ott, Sascha, Hammond, John and Gifford, Miriam L. (2019) Regulation of resource partitioning coordinates nitrogen and rhizobia responses and autoregulation of nodulation in the legume Medicago truncatula. Molecular Plant, 12 (6). pp. 833-846. doi:10.1016/j.molp.2019.03.014

Lagunas, Beatriz, Dodd, Ian C. and Gifford, Miriam L. (2019) A ‘nodemap’ to sustainable maize roots : linking nitrogen and water uptake improvements. Journal of Experimental Botany, 70 (19). pp. 5036-5039. doi:10.1093/jxb/erz315

Lai, Yan, Cuzick, Alayne, Lu, Xueqing Maggie, Wang, Jianqiang, Katiyar, Neerja, Tsuchiya, Tokuji, Le Roch, Karine, McDowell, John M., Holub, E. B. and Eulgem, Thomas (2019) The Arabidopsis RRM domain protein EDM3 mediates race-specific disease resistance by controlling H3K9me2-dependent alternative polyadenylation of RPP7 immune receptor transcripts. The Plant Journal, 97 (4). pp. 646-660. doi:10.1111/tpj.14148

Lalo, Ulyana, Bogdanov, Alexander and Pankratov, Yuriy (2019) Age- and experience-related plasticity of ATP-mediated signaling in the neocortex. Frontiers in Cellular Neuroscience, 13 . 242. doi:10.3389/fncel.2019.00242

Lan, Xiaoyan, Sun, Zhengwu, Chu, Chengyan, Boltze, Johannes and Li, Sheng (2019) Dental pulp stem cells : an attractive alternative for cell therapy in ischemic stroke. Frontiers in Neurology, 10 . 824. doi:10.3389/fneur.2019.00824

Langley, Gareth W., Cain, Ricky, Tyrrell, Jonathan M., Hinchliffe, Philip, Calvopiña, Karina, Tooke, Catherine L., Widlake, Emma, Dowson, Christopher G., Spencer, James, Walsh, Timothy R., Schofield, Christopher J. and Brem, Jürgen (2019) Profiling interactions of vaborbactam with metallo-β-lactamases. Bioorganic & Medicinal Chemistry Letters, 29 (15). pp. 1981-1984. doi:10.1016/j.bmcl.2019.05.031

Lee, Sarah C., Collins, Richard, Lin, Yu-pin, Jamshad, Mohammed, Broughton, Claire E., Harris, Sarah A., Hanson, Benjamin S, Tognoloni, Cecilia, Parslow, Rosemary A., Terry, Ann E., Rodger, Alison, Smith, Corinne J., Edler, Karen J., Ford, Robert, Roper, David I. and Dafforn, Timothy R. (2019) Nano-encapsulated escherichia coli divisome anchor ZipA, and in complex with FtsZ. Scientific Reports, 9 (1). 18712. doi:10.1038/s41598-019-54999-x

Leupold, Maike, Pfeiffer, Miriam, Garbe‐Schönberg, Dieter and Sheppard, Charles (Charles R. C.) (2019) Reef‐Scale‐Dependent Response of Massive Porites Corals From the Central Indian Ocean to Prolonged Thermal Stress: Evidence From Coral Sr/Ca Measurements. Geochemistry, Geophysics, Geosystems, 20 (3). pp. 1468-1484. doi:10.1029/2018GC007796

Li, Shen, Oh, Byoung Chol, Chu, Chengyan, Arnold, Antje, Jablonska, Anna, Furtmüller, Georg J., Qin, Hua-Min, Boltze, Johannes, Magnus, Tim, Ludewig, Peter, Janowski, Mirosław, Brandacher, Gerald and Walczak, Piotr (2019) Induction of immunological tolerance to myelinogenic glial-restricted progenitor allografts. Brain, 142 (11). pp. 3456-3472. doi:10.1093/brain/awz275

Li, Shou-Li, Ferrari, Matthew J., Bjørnstad, Ottar N., Runge, Michael C., Fonnesbeck, Christopher J., Tildesley, Michael J., Pannell, David and Shea, Katriona (2019) Concurrent assessment of epidemiological and operational uncertainties for optimal outbreak control : Ebola as a case study. Proceedings of the Royal Society B: Biological Sciences, 286 (1905). 20190774. doi:10.1098/rspb.2019.0774

(2019) Global patterns in monthly activity of influenza virus, respiratory syncytial virus, parainfluenza virus, and metapneumovirus : a systematic analysis. The Lancet Global Health, 7 (8). e1031-e1045. doi:10.1016/S2214-109X(19)30264-5

Loera‐Valencia, R., Cedazo‐Minguez, A., Kenigsberg, P., Page, G., Duarte, A., Giusti, P., Zusso, M., Robert, P., Frisoni, G. B., Cattaneo, A., Zille, M., Boltze, Johannes, Cartier, N., Buee, l., Johansson, G. and Winblad, B. (2019) Current and emerging avenues for Alzheimer's disease drug targets. Journal of Internal Medicine . doi:10.1111/joim.12959 (In Press)

MacGregor-Chatwin, C., Jackson, P. J., Sener, M., Chidgey, J. W., Hitchcock, A., Qian, P., Mayneord, G. E., Johnson, M. P., Luthey-Schulten, Z., Dickman, M. J., Scanlan, David J. and Hunter, C. N. (2019) Membrane organization of photosystem I complexes in the most abundant phototroph on Earth. Nature Plants, 5 (8). pp. 879-889. doi:10.1038/s41477-019-0475-z

MacQueen, Alice, Tian, Dacheng, Chang, Wenhan, Holub, E. B., Kreitman, Martin and Bergelson, Joy (2019) Population genetics of the highly polymorphic RPP8 gene family. Genes, 10 (9). e691. doi:10.3390/genes10090691

Martin, Alexander J., Dale, Nicholas, Imray, Christopher H. E., Roffe, Christine, Smith, Craig J., Tian, Faming and Price, Christopher I. (2019) The association between early neurological deterioration and whole blood purine concentration during acute stroke. Biomarker Research, 7 (1). doi:10.1186/s40364-019-0158-y

Martínez-Flores, Fernando, Crespo, Manuel B., Geoffriau, Emmanuel, Allender, Charlotte J., Ruess, Holly, Arbizu, Carlos I., Simon, Philipp and Spooner, David M. (2019) Extended studies of interspecific relationships in Daucus (Apiaceae) using DNA sequences from ten nuclear orthologues. Botanical Journal of the Linnean Society, 191 (2). pp. 164-187. doi:10.1093/botlinnean/boz042

Massarweh, Ahmad, Bosco, Michael, Chantret, Isabelle, Léger, Thibaut, Jamal, Layla, Roper, David I., Dowson, Christopher G., Busca, Patricia, Bouhss, Ahmed, Gravier-Pelletier, Christine and Moore, Stuart E. H. (2019) Bacterial lipid II analogs : novel in vitro substrates for mammalian oligosaccharyl diphosphodolichol diphosphatase (DLODP) activities. Molecules, 24 (11). 2135. doi:10.3390/molecules24112135

McKenna, Joseph F., Rolfe, D. J., Webb, S. E. D., Tolmie, A. F., Botchway, S. W., Martin-Fernandez, M. L., Hawes, C. and Runions, J. (2019) The cell wall regulates dynamics and size of plasma-membrane nanodomains in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 116 (26). pp. 12857-12862. doi:10.1073/pnas.1819077116

Meakin, Sophie R. and Keeling, Matthew James (2019) Correlations between stochastic endemic infection in multiple interacting subpopulations. Journal of Theoretical Biology, 483 . 109991. doi:10.1016/j.jtbi.2019.109991

Menary, Jonathan, Seers, Kate and Collier, Rosemary (2019) Innovation in the UK fresh produce sector : identifying systemic problems and the move towards systemic facilitation. Agricultural Systems, 176 . 102675. doi:10.1016/j.agsy.2019.102675

Michniewski, Slawomir, Redgwell, Tamsin, Grigonyte, Aurelija, Rihtman, Branko, Aguilo‐Ferretjans, Maria, Christie‐Oleza, Joseph, Jameson, Eleanor, Scanlan, David J. and Millard, Andrew D. (2019) Riding the wave of genomics to investigate aquatic coliphage diversity and activity. Environmental Microbiology, 21 (6). pp. 2112-2128. doi:10.1111/1462-2920.14590

Miles, Jennifer A., Machattou, Petrina, Nevin-Jones, David, Webb, Michael E., Millard, Andrew, Scanlan, David J. and Taylor, Paul C. (2019) Identification of a cyanobacterial aldehyde dehydrogenase that produces retinoic acid in vitro. Biochemical and Biophysical Research Communications, 510 (1). pp. 27-34. doi:10.1016/j.bbrc.2018.12.171

Mimault, Matthias, Ptashnyk, Mariya, Bassel, George and Dupuy, Lionel X. (2019) Smoothed particle hydrodynamics for root growth mechanics. Engineering Analysis with Boundary Elements, 105 . pp. 20-30. doi:10.1016/j.enganabound.2019.03.025

Mitchell, Daniel A., Fayter, Alice, Deller, Robert C., Hasan, Muhammad, Gutierrez-Marcos, José F. and Gibson, Matthew I. (2019) Ice-recrystallization inhibiting polymers protect proteins against freeze-stress and enable glycerol-free cryostorage. Materials Horizons, 6 (2). pp. 354-368. doi:10.1039/c8mh00727f (In Press)

Moniri, Ahmad, Rodriguez-Manzano, Jesus, Malpartida-Cardenas, Kenny, Yu, Ling-Shan, Didelot, Xavier, Holmes, Alison and Georgiou, Pantelis (2019) Framework for DNA quantification and outlier detection using multidimensional standard curves. Analytical Chemistry, 91 (11). pp. 7426-7434. doi:10.1021/acs.analchem.9b01466

Montenegro-Johnson, Thomas, Strauss, Soeren, Jackson, Matthew D. B., Walker, Liam, Smith, Richard S. and Bassel, George (2019) 3DCellAtlas Meristem : a tool for the global cellular annotation of shoot apical meristems. Plant Methods, 15 (1). 33. doi:10.1186/s13007-019-0413-0

Morris, Kyle L., Jones, Joseph Reuben, Halebian, Mary, Wu, Shenping, Baker, Michael, Armache, Jean-Paul, Avila Ibarra, Amaurys, Sessions, Richard B., Cameron, Alexander, Cheng, Yifan and Smith, Corinne J. (2019) Cryo-EM of multiple cage architectures reveals a universal mode of clathrin self assembly. Nature Structural & Molecular Biology, 26 . pp. 890-898. doi:10.1038/s41594-019-0292-0

Murota, Chisato, Fujiwara, Shoko, Tsujishita, Maki, Urabe, Kanae, Takayanagi, Shuta, Aoki, Motohide, Umemura, Tomonari, Eaton-Rye, Julian J., Pitt, Frances Diana and Tsuzuki, Mikio (2019) Hyper-resistance to arsenate in the cyanobacterium Synechocystis sp. PCC 6803 is influenced by the differential kinetics of its pst-ABC transporters and external phosphate concentration exposure. Algal Research, 38 . p. 101410. doi:10.1016/j.algal.2019.101410

Mushinski, Ryan , Gentry, Terry J. and Boutton, Thomas W. (2019) Forest organic matter removal leads to long-term reductions in bacterial and fungal abundance. Applied Soil Ecology, 137 . pp. 106-110. doi:10.1016/j.apsoil.2019.01.017

Mushinski, Ryan , Phillips, Richard P., Payne, Zachary C., Abney, Rebecca B., Jo, Insu, Fei, Songlin, Pusede, Sally E., White, Jeffrey R., Rusch, Douglas B. and Raff, Jonathan D. (2019) Microbial mechanisms and ecosystem flux estimation for aerobic NOy emissions from deciduous forest soils. Proceedings of the National Academy of Sciences of the United States of America, 116 (6). pp. 2138-2145. doi:10.1073/pnas.1814632116

Nitzsche, Björn, Boltze, Johannes, Ludewig, Eberhard, Flegel, Thomas, Schmidt, Martin J., Seeger, Johannes, Barthel, Henryk, Brooks, Olivia W., Gounis, Matthew J., Stoffel, Michael H. and Schulze, Sabine (2019) A stereotaxic breed-averaged, symmetric T2w canine brain atlas including detailed morphological and volumetrical data sets. NeuroImage, 187 . pp. 93-103. doi:10.1016/j.neuroimage.2018.01.066

Norton, Briony A., Bending, G. D., Clark, Rachel, Corstanje, Ron, Dunnett, Nigel, Evans, Karl L., Grafius, Darren R., Gravestock, Emily, Grice, Samuel M., Harris, Jim A., Hilton, Sally, Hoyle, Helen, Lim, Edward, Mercer, Theresa G., Pawlett, Mark, Pescott, Oliver L., Richards, J. Paul, Southon, Georgina E. and Warren, Philip H. (2019) Urban meadows as an alternative to short mown grassland : effects of composition and height on biodiversity. Ecological Applications, 29 (6). e01946. doi:10.1002/eap.1946

Nurika, Irnia, Suhartini, Sri and Barker, Guy C. (2019) Biotransformation of tropical Lignocellulosic feedstock using the Brown rot fungus Serpula lacrymans. Waste and Biomass Valorization . doi:10.1007/s12649-019-00581-5 (In Press)

Nyiro, Joyce, Kiyuka, Patience K., Mutunga, Martin N., Sande, Charles J., Munywoki, Patrick K., Scott, J. Anthony G. and Nokes, D. James (2019) Agreement between ELISA and plaque reduction neutralisation assay in detection of respiratory syncytial virus specific antibodies in a birth Cohort from Kilifi, coastal Kenya. Wellcome Open Research, 4 . 33. doi:doi:10.12688/wellcomeopenres.15108.1

Oketch, John W., Kamau, Everlyn, Otieno, Grieven P., Otieno, James R., Agoti, Charles N. and Nokes, D. James (2019) Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007–2016. BMC Infectious Diseases, 19 (1). 757. doi:10.1186/s12879-019-4381-9

Okinaka, Yuka, Kikuchi-Taura, Akie, Takeuchi, Yukiko, Ogawa, Yuko, Boltze, Johannes, Gul, Sheraz, Claussen, Carsten and Taguchi, Akihiko (2019) Clot-derived contaminants in transplanted bone marrow mononuclear cells impair the therapeutic effect in stroke. Stroke, 50 (10). pp. 2883-2891. doi:10.1161/STROKEAHA.119.026669

Oochi, Akihiro, Hajny, Jakub, Fukui, Kosuke, Nakao, Yukio, Gallei, Michelle, Quareshy, Mussa, Takahashi, Koji, Kinoshita, Toshinori, Ramans Harborough, Sigurd, Kepinski, Stefan, Kasahara, Hiroyuki, Napier, R. (Richard), Friml, Jiri and Hayashi, Ken-ichiro (2019) Pinstatic acid promotes auxin efflux transport by inhibiting PIN internalization. Plant Physiology . doi:10.1104/pp.19.00201 (In Press)

(2019) Impact of the introduction of rotavirus vaccine on hospital admissions for diarrhoea among children in Kenya : a controlled interrupted time series analysis. Clinical Infectious Diseases . doi:10.1093/cid/ciz912 (In Press)

Ozer, Egon A., Nnah, Ekpeno, Didelot, Xavier, Whitaker, Rachel J. and Hauser, Alan R. (2019) The population structure of Pseudomonas aeruginosa is characterized by genetic isolation of exoU+ and exoS+ lineages. Genome Biology and Evolution, 11 (1). pp. 1780-1796. doi:10.1093/gbe/evz119

Palani, Saravanan, Köster, Darius, Hatano, Tomoyuki, Kamnev, Anton, Kanamaru, Taishi, Brooker, Holly R., Hernandez-Fernaud, Juan Ramon, Jones, Alexandra M. E., Millar, Jonathan B. A., Mulvihill, Daniel P. and Balasubramanian, Mohan K. (2019) Phosphoregulation of tropomyosin is crucial for actin cable turnover and division site placement. Journal of Cell Biology, 2018 (11). jcb.201809089. doi:10.1083/jcb.201809089

Panfilio, Kristen A. (2019) Genetics and mechanics combine to guide the embryonic gut. Nature, 572 (7770). pp. 446-447. doi:10.1038/d41586-019-02398-7

(2019) Molecular evolutionary trends and feeding ecology diversification in the Hemiptera anchored by the milkweed bug genome. Genome Biology, 20 . 64. doi:10.1186/s13059-019-1660-0

Parker, Joanne L., Corey, Robin A., Stansfeld, Phillip J. and Newstead, Simon (2019) Structural basis for substrate specificity and regulation of nucleotide sugar transporters in the lipid bilayer. Nature Communications, 10 . 4657. doi:10.1038/S41467-019-12673-w

Piña Olmos, Sofia, Díaz Torres, Roberto, Elbakrawy, Eman, Hughes, Louise, McKenna, Joseph F., Hill, Mark A., Kadhim, Munira, Ramírez Noguera, Patricia and Bolanos-Garcia, Victor M. (2019) Combinatorial use of chitosan nanoparticles, reversine, and ionising radiation on breast cancer cells associated with mitosis deregulation. Biomolecules, 9 (5). 186. doi:10.3390/biom9050186

(2019) SMA-PAGE : a new method to examine complexes of membrane proteins using SMALP nano-encapsulation and native gel electrophoresis. Biochimica et Biophysica Acta (BBA) - Biomembranes, 186 (8). pp. 1437-1445. doi:10.1016/j.bbamem.2019.05.011

Privitera, Lucia, Hogg, Ellen L., Gaestel, Matthias, Wall, Mark J. and Corrêa, Sônia A. L. (2019) The MK2 cascade regulates mGluR-dependent synaptic plasticity and reversal learning. Neuropharmacology, 155 . pp. 121-130. doi:10.1016/j.neuropharm.2019.05.024

Prosser, Naomi, Purdy, Kevin J. and Green, Laura E. (2019) Increase in the flock prevalence of lameness in ewes is associated with a reduction in farmers using evidence-based management of prompt treatment : a longitudinal observational study of 154 English sheep flocks 2013–2015. Preventive Veterinary Medicine, 173 . 104801. doi:10.1016/j.prevetmed.2019.104801

Rao, Shanlin, Klesse, Gianni, Stansfeld, Phillip J., Tucker, Stephen J. and Sansom, Mark S. P. (2019) A heuristic derived from analysis of the ion channel structural proteome permits the rapid identification of hydrophobic gates. Proceedings of the National Academy of Sciences of the United States of America, 116 (28). pp. 13989-13995. doi:10.1073/pnas.1902702116

Reed, Kelly, Lodwick, Lisa, Leleković, Tino and Vulić, Hrvoje (2019) Exploring Roman ritual behaviours through plant remains from Pannonia Inferior. Environmental Archaeology, 24 (1). pp. 28-37. doi:10.1080/14614103.2018.1443601

(2019) Rapid covalent-probe discovery by electrophile-fragment screening. Journal of the American Chemical Society, 141 (22). pp. 8951-8968. doi:10.1021/jacs.9b02822

Rich-Griffin, Charlotte, Stechemesser, Annika, Finch, Jessica A., Lucas, Emma S., Ott, Sascha and Schäfer, Patrick (2019) Single-cell transcriptomics : a high-resolution avenue for plant functional genomics. Trends in Plant Science . doi:10.1016/j.tplants.2019.10.008

Rihtman, Branko, Bowman-Grahl, Sabine, Millard, Andrew, Corrigan, Rebecca M., Clokie, Martha R. J. and Scanlan, David J. (2019) Cyanophage MazG is a pyrophosphohydrolase but unable to hydrolyse magic spot nucleotides. Environmental Microbiology Reports, 11 (3). pp. 448-445. doi:10.1111/1758-2229.12741

Rinné, Susanne, Kiper, Aytug K., Vowinkel, Kirsty S., Ramírez, David, Schewe, Marcus, Bedoya, Mauricio, Aser, Diana, Gensler, Isabella, Netter, Michael F., Stansfeld, Phillip J., Baukrowitz, Thomas, Gonzalez, Wendy and Decher, Niels (2019) The molecular basis for an allosteric inhibition of K+-flux gating in K2P channels. eLife, 8 . doi:10.7554/eLife.39476

Sand, Charles, Njunge, James, Mwongeli, Joyce, Mutunga, Martin, Chege, Timothy, Gicheru, Elijah, Gardiner, Elizabeth, Gwela, Agnes, Drysdale, Simon, Green, Christopher, Berkley, James, Nokes, D. James and Pollard, Andrew J. (2019) Airway response to respiratory syncytial virus has incidental antibacterial effects. Nature Communications, 10 (1). 2218. doi:10.1038/s41467-019-10222-z

Santos Rodrigues, Fabio Henrique dos, Firczuk, Helena , Breeze, Alexander L., Cameron, Alexander, Walko, Martin, Wilson, Andrew J, Zanchin , Nilson I.T. and McCarthy, John E. G. (2019) The Leishmania PABP1–eIF4E4 interface : a novel 5′–3′ interaction architecture for trans-spliced mRNAs. Nucleic Acids Research, 47 (3). pp. 1493-1504. doi:10.1093/nar/gky1187

(2019) Stroke treatment academic industry roundtable x : brain cytoprotection therapies in the reperfusion era. Stroke, 50 (4). pp. 1026-1031. doi:10.1161/STROKEAHA.118.023927

Schausberger, Christina, Roach, Thomas, Stöggl, Wolfgang, Arc, Erwann, Finch-Savage, William E. and Kranner, Ilse (2019) Abscisic acid-determined seed vigour differences do not influence redox regulation during ageing. Biochemical Journal, 476 (6). pp. 965-974. doi:10.1042/BCJ20180903

Schäfer, Hendrik and Eyice, Özge (2019) Microbial cycling of methanethiol. Current Issues in Molecular Biology, 33 . pp. 173-182. doi:doi:10.21775/CIMB.033.173 (In Press)

Shaw, Sophie and Purdy, Kevin J. (2019) Sex bias in tuberculosis in the developing world. American Journal of Undergraduate Research, 15 (4). pp. 61-70. doi:10.33697/ajur.2019.007

Shazeeb, Mohammed Salman , King, Robert M., Brooks, Olivia W., Puri, Ajit S., Henninger, Nils, Boltze, Johannes and Gounis, Matthew J. (2019) Infarct evolution in a large animal model of middle cerebral artery occlusion. Translational Stroke Research . doi:10.1007/s12975-019-00732-9 (In Press)

Shennan, Andrew, Chandiramani, Manju, Bennett, Phillip, David, Anna L., Girling, Joanna, Ridout, Alexandra, Seed, Paul T., Simpson, Nigel, Thornton, Steven, Tydeman, Graham, Quenby, Siobhan and Carter, Jenny (2019) MAVRIC : a multicentre randomised controlled trial of transabdominal versus transvaginal cervical cerclage. American Journal of Obstetrics and Gynecology . doi:10.1016/j.ajog.2019.09.040 (In Press)

Shih, P -Y., Lee, J. S., Shinya, R., Kanzaki, N., Pires-da Silva, André Francisco, Badroos, J. M., Goetz, E., Sapir, A. and Sternberg, P. W. (2019) Newly identified nematodes from Mono Lake exhibit extreme arsenic resistance. Current Biology, 29 (19). 3339-3344.E4. doi:10.1016/j.cub.2019.08.024

Simcox, Lee J., Pereira, Rui P. A., Wellington, E. M. H. and Macpherson, Julie V. (2019) Boron doped diamond as a low biofouling material in aquatic environments : assessment of pseudomonas aeruginosa biofilm formation. ACS Applied Materials and Interfaces, 11 . 28. doi:10.1021/acsami.9b07245

Simpson, Daniel H., Hapeshi, Alexia, Rogers, Nicola J., Brabec, Viktor, Clarkson, Guy J., Fox, David J., Hrabina, Ondrej, Kay, Gemma L., King, Andrew, Malina, Jaroslav, Millard, Andrew D., Moat, John, Roper, David I., Song, Hualong, Waterfield, Nicholas R. and Scott, Peter (2019) Metallohelices that kill Gram-negative pathogens using intracellular antimicrobial peptide pathways. Chemical Science, 10 . 9708-9720. doi:10.1039/C9SC03532J

Singh, Anand K., Choudhury, Subhendu Roy, De, Sandip, Zhang, Jie, Kissane, Stephen, Dwivedi, Vibha, Ramanathan, Preethi, Petric, Marija, Orsini, Luisa, Hebenstreit, Daniel and Brogna, Saverio (2019) The RNA helicase UPF1 associates with mRNAs co-transcriptionally and is required for the release of mRNAs from gene loci. eLife, 8 . e41444. doi:10.7554/eLife.41444

Sirec, Teja, Benarroch, Jonatan M., Buffard, Pauline, Garcia-Ojalvo, Jordi and Asally, Munehiro (2019) Electrical polarization enables integrative quality control during bacterial differentiation into spores. iScience, 16 . pp. 378-389. doi:10.1016/j.isci.2019.05.044

Smith, Alastair, Rihtman, Branko, Stirrup, Rachel, Silvano, Eleonora, Mausz, Michaela A., Scanlan, David J. and Chen, Yin (2019) Elucidation of glutamine lipid biosynthesis in marine bacteria reveals its importance under phosphorus deplete growth in Rhodobacteraceae. The ISME Journal, 13 . pp. 39-49. doi:10.1038/s41396-018-0249-z

Smith, Oliver, Nicholson, William V., Kistler, Logan, Mace, Emma, Clapham, Alan, Rose, Pamela, Stevens, Chris, Ware, Roselyn, Samavedam, Siva, Barker, Guy C., Jordan, David, Fuller, Dorian Q. and Allaby, Robin G. (2019) A domestication history of dynamic adaptation and genomic deterioration in Sorghum. Nature Plants, 5 (4). pp. 369-379. doi:10.1038/s41477-019-0397-9

Smith, Sarah Marie, Walker, Kelly L., Jones, Alexander S., Smith, Corinne J. and Robinson, Colin (2019) Characterisation of a novel method for the production of single‐span membrane proteins in Escherichia coli. Biotechnology and Bioengineering, 116 (4). pp. 722-733. doi:10.1002/bit.26895

Soria-García, Ángel, Rubio, Maria C., Lagunas, Beatriz, López-Gomollón, Sara, Lujan, María de los Ángeles , Díaz-Guerra, Raúl , Picorel, Rafael and Alfonso, Miguel (2019) Tissue distribution and specific contribution of Arabidopsis FAD7 and FAD8 plastid desaturases to the JA- and ABA-mediated cold stress or defense responses. Plant and Cell Physiology, 60 (5). pp. 1025-1040. doi:10.1093/pcp/pcz017

Spensley, Katrina J., Wikramaratna, Paul S., Penman, Bridget S., Walker, Andrew, Smith, Adrian L., Pybus, Oliver G., Jean, Létitia , Gupta, Sunetra and Lourenço, José (2019) Reverse immunodynamics : a new method for identifying targets of protective immunity. Scientific Reports, 9 . 2164 . doi:10.1038/s41598-018-37288-x

Stratford, James P., Edwards, Conor L.A., Ghanshyam, Manjari J. , Malyshev, Dmitry, Delise, Marco A., Hayashi, Yoshikatsu and Asally, Munehiro (2019) Electrically induced bacterial membrane-potential dynamics correspond to cellular proliferation capacity. Proceedings of the National Academy of Sciences of the United States of America, 116 (9). pp. 9552-9557. doi:10.1073/pnas.1901788116

Stroh, Albrecht, Kressel, Jenny, Coras, Roland, Dreyer, Antje Y., Fröhlich, Wenke, Lobsien, Donald, Blümcke, Ingmar, Zoubaa, Saida, Schlegel , Jürgen, Zimmer, Claus, Boltze, Johannes and Förschler, Annette (2019) A safe and effective magnetic labeling protocol for MRI-based tracking of human adult neural stem cells. Frontiers in Neuroscience, 13 . 1092. doi:10.3389/fnins.2019.01092

Stuart, Samuel, Hickey, Aodhan, Vitorio, Rodrigo, Welman, Karen, Foo, Stacy, Keen, David A. and Godfrey, Alan (2019) Eye-tracker algorithms to detect saccades during static and dynamic tasks: a structured review. Physiological Measurement, 40 (2). 02TR01. doi:10.1088/1361-6579/ab02ab

Studholme, David J., Panda, Preeti, Sanfuentes Von Stowasser, Eugenio, González, Mariela, Hill, Rowena, Sambles, Christine, Grant, Murray R., Williams, Nari M. and McDougal, Rebecca L. (2019) Genome sequencing of oomycete isolates from Chile supports the New Zealand origin of Phytophthora kernoviae and makes available the first Nothophytophthora sp. genome. Molecular Plant Pathology, 20 (3). pp. 423-431. doi:10.1111/mpp.12765

Sudhakar, Padhmanand, Claire-Jacomin, Anne, Hautefort, Isabelle, Samavedam, Siva, Fatemian, Koorosh, Ari, Eszter, Gul, Leila, Demeter, Amanda, Jones, Emily, Korcsmaros, Tamas and Nezis, Ioannis P. (2019) Targeted interplay between bacterial pathogens and host autophagy. Autophagy, 15 (9). pp. 1620-1633. doi:10.1080/15548627.2019.1590519

Sun, Jing, Mausz, Michaela A., Chen, Yin and Giovannoni, Stephen J. (2019) Microbial trimethylamine metabolism in marine environments. Environmental Microbiology, 21 (2). pp. 513-520. doi:10.1111/1462-2920.14461

Sánchez-Montesino, Rocío, Bouza-Morcillo, Laura, Marquez, Julietta, Ghita, Melania, Duran-Nebreda, Salva, Gómez, Luis, Holdsworth, Michael J., Bassel, George and Oñate-Sánchez, Luis (2019) A regulatory module controlling GA-mediated endosperm cell expansion is critical for seed germination in arabidopsis. Molecular Plant, 12 (1). pp. 71-85. doi:10.1016/j.molp.2018.10.009

Tandonnet, Sophie, Koutsovoulos, Georgios D., Adams, Sally, Cloarec, Delphine, Parihar, Manish, Blaxter, Mark L. and Pires-da Silva, André Francisco (2019) Chromosome-wide evolution and sex determination in the three-sexed nematode auanema rhodensis. G3 Genes|Genomes|Genetics, 9 (3). pp. 1211-1230. doi:10.1534/g3.119.0011

Taubert, Martin, Grob, Carolina, Crombie, Andrew, Howat, Alexandra M., Burns, Oliver J., Weber, Miriam, Lott, Christian, Kaster, Anne‐Kristin, Vollmers, John, Jehmlich, Nico, Bergen, Martin, Chen, Yin and Murrell, J. Colin (2019) Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy. Environmental Microbiology . doi:10.1111/1462-2920.14728 (In Press)

Taylor, Andrew, Armitage, Andrew D., Handy, Claire, Jackson, Alison C., Hulin, Michelle T., Harrison, Richard J. and Clarkson, John P. (2019) Basal rot of narcissus : understanding pathogenicity in fusarium oxysporum f. sp. narcissi. Frontiers in Microbiology, 10 . 2905. doi:10.3389/fmicb.2019.02905

Taylor, Andrew, Barnes, Adam, Jackson, Alison C. and Clarkson, John P. (2019) First report of Fusarium oxysporum and Fusarium redolens causing wilting and yellowing of wild rocket (Diplotaxis tenuifolia) in the UK. Plant Disease, 103 (6). 1428. doi:10.1094/pdis-12-18-2143-pdn

Taylor, Andrew, Jackson, Alison C. and Clarkson, John P. (2019) First report of Fusarium oxysporum f. sp. lactucae Race 4 causing lettuce wilt in England and Ireland. Plant Disease, 103 (5). 1033. doi:10.1094/pdis-10-18-1858-pdn

Taylor, Andrew, Teakle, Graham R., Walley, Peter G., Finch-Savage, William E., Jackson, Alison C., Jones, Julie, Hand, Paul, Thomas, Brian, Havey, Michael J., Pink, David A. C. and Clarkson, John P. (2019) Assembly and characterisation of a unique onion diversity set identifies resistance to Fusarium basal rot and improved seedling vigour. Theoretical and Applied Genetics, 132 (12). pp. 3245-3264. doi:10.1007/s00122-019-03422-0

Teo, Alvin C. K. , Lee, Sarah C., Pollock, Naomi L., Stroud, Zoe, Hall, Stephen, Thakker, Alpesh, Pitt, Andrew R., Dafforn, Timothy R., Spickett, Corinne M. and Roper, David I. (2019) Analysis of SMALP co-extracted phospholipids shows distinct membrane environments for three classes of bacterial membrane protein. Scientific Reports, 9 (1). 1813 . doi:10.1038/s41598-018-37962-0

Tildesley, Michael J., Brand, Samuel, Brooks Pollock, E., Bradbury, Naomi, Werkman, Marleen and Keeling, Matthew James (2019) The role of movement restrictions in limiting the economic impact of livestock infections. Nature Sustainability, 2 . pp. 834-840. doi:10.1038/s41893-019-0356-5

Toro, Carla T, Eliassen, Eva and Prusty, Bhupesh K (2019) Does infection of cerebellar Purkinje neurons with human herpes virus 6A or 6B (HHV-6) increase the risk of developing mood disorders? Future Microbiology, 14 (2). pp. 85-88. doi:10.2217/fmb-2018-0307

Tsao, Kimberly, Sellman, Stefan, Beck-Johnson, Lindsay M., Murrieta, Deedra J., Hallman, Clayton, Lindström, Tom, Miller, Ryan S., Portacci, Katie, Tildesley, Michael J. and Webb, Colleen T. (2019) Effects of regional differences and demography in modelling foot-and-mouth disease in cattle at the national scale. Interface Focus, 10 (1). 20190054. doi:10.1098/rsfs.2019.0054

Turnbull, Dionne, Wang, Haixia, Breen, Susan, Malec, Marek, Naqvi, Shaista, Yang, Lina, Welsh, Lydia, Hemsley, Piers, Zhendong, Tian, Brunner, Frederic, Gilroy, Eleanor M. and Birch, Paul R.J. (2019) AVR2 targets BSL family members, which act as susceptibility factors to suppress host immunity. Plant Physiology, 180 (1). pp. 571-581. doi:10.1104/pp.18.01143

(2019) The functional ALDH2 polymorphism is associated with breast cancer risk : A pooled analysis from the Breast Cancer Association Consortium. Molecular Genetics & Genomic Medicine, 7 (6). e707. doi:10.1002/mgg3.707

Vinner, Gurinder K., Richards, Kerry, Leppanen, Miika, Sagona, Antonia P. and Malik, Danish J. (2019) Microencapsulation of enteric bacteriophages in a pH-responsive solid oral dosage formulation using a scalable membrane emulsification process. Pharmaceutics, 11 (9). 475. doi:10.3390/pharmaceutics11090475

Wilbrandt, Jeanne, Misof, Bernhard, Panfilio, Kristen A. and Niehuis, Oliver (2019) Repertoire-wide gene structure analyses : a case study comparing automatically predicted and manually annotated gene models. BMC Genomics, 20 (1). 753. doi:10.1186/s12864-019-6064-8

Wright, Robyn J., Gibson, Matthew I. and Christie-Oleza, Joseph Alexander (2019) Understanding microbial community dynamics to improve optimal microbiome selection. Microbiome, 7 (1). 85. doi:10.1186/s40168-019-0702-x

Yerebakan, Can, Boltze, Johannes, Elmontaser, Hatem, Yoruker, Uygar, Latus, Heiner, Khalil, Markus, Ostermayer, Stefan, Steinbrenner, Blanca, Apitz, Christian, Schneider, Matthias, Suchowski, Marcel, Ruetten, Rita, Mueller, Kristin, Kerst, Gunther, Schranz, Dietmar and Akintuerk, Hakan (2019) Effects of pulmonary artery banding in doxorubicin-induced left ventricular cardiomyopathy. The Journal of Thoracic and Cardiovascular Surgery, 157 (6). pp. 2416-2428. doi:10.1016/j.jtcvs.2019.01.138

Zaborsky, Nadja , Gassner, Franz , Höpner, Jan , Schubert, Maria , Hebenstreit, Daniel, Stark, Richard Jan, Asslaber, Daniela , Steiner, Markus, Geisberger, Roland , Greil, Richard and Egle , Alexander (2019) Exome sequencing of the TCL1 mouse model for CLL reveals genetic heterogeneity and dynamics during disease development. Leukemia, 33 (4). pp. 957-968. doi:10.1038/s41375-018-0260-4

Zadjelovic, V., Gibson, M. I., Dorador, C. and Christie-Oleza, Joseph Alexander (2019) Genome of Alcanivorax sp. 24 : a hydrocarbon degrading bacterium isolated from marine plastic debris. Marine Genomics . doi:10.1016/j.margen.2019.05.001

Zanardini, Elisabetta, May, Eric, Purdy, Kevin J. and Murrell, J. Colin (2019) Nutrient cycling potential within microbial communities on culturally important stoneworks. Environmental Microbiology Reports, 11 (2). pp. 147-154. doi:10.1111/1758-2229.12707 (In Press)

Zerfaß, Christian, Asally, Munehiro and Soyer, Orkun S. (2019) Interrogating metabolism as an electron flow system. Current Opinion in Systems Biology, 13 . pp. 59-67. doi:10.1016/j.coisb.2018.10.001 (In Press)

Zerfaß, Christian, Christie-Oleza, Joseph A., Soyer, Orkun S. and Master, Emma R. (2019) Manganese oxide biomineralization provides protection against nitrite toxicity in a cell-density-dependent manner. Applied and Environmental Microbiology, 85 (2). e02129-18. doi:10.1128/AEM.02129-18

Zhang, Lihong, Calvo-Bado, Leo A., Murray, A. K., Amos, Gregory C. A., Hawkey, P. M., Wellington, E. M. H. and Gaze, William H. (2019) Novel clinically relevant antibiotic resistance genes associated with sewage sludge and industrial waste streams revealed by functional metagenomic screening. Environment International, 132 . p. 105120. doi:10.1016/j.envint.2019.105120

Zhang, Xian, Kang, Lihua, Zhang, Qi, Meng, Qiqi, Pan, Yafei, Yu, Zhiming, Shi, Nongnong, Jackson, Stephen D. , Zhang, Xinlian, Wang, Huizhong, Tör, Mahmut and Hong, Yiguo (2019) An RNAi suppressor activates in planta virus-mediated gene editing. Functional & Integrative Genomics . doi:10.1007/s10142-019-00730-y (In Press)

Zhao, Lin, Chen, Hongyou, Didelot, Xavier, Li, Zhenpeng, Li, Yinghui, Chen, Meiling, Du, Yu, Zhao, Hongqun, Li, Jie, Hu, Qinghua, Kan, Biao, Chen, Min and Pang, Bo (2019) Co-existence of multiple distinct lineages in Vibrio parahaemolyticus serotype O4:K12. Microbial Genomics . doi:10.1099/mgen.0.000287 (In Press)

Zhu, Ying, Snape, Jason, Jones, Kevin and Sweetman, Andrew (2019) Spatially explicit large-scale environmental risk assessment of pharmaceuticals in surface water in China. Environmental Science & Technology, 53 (5). pp. 2559-2569. doi:10.1021/acs.est.8b07054

de los Santos, Emmanuel L. C. (2019) NeuRiPP : neural network identification of RiPP precursor peptides. Scientific Reports, 9 (1). 13406. doi:10.1038/s41598-019-49764-z

Book Item

Harrison, Freya and Connelly, Erin (2019) Could medieval medicine help the fight against antimicrobial resistance? In: Jones, Chris and Kostick, Conor and Oschema, Klaus, (eds.) Making the Medieval Relevant: How Medieval Studies Contribute to Improving our Understanding of the Present. Berlin, Boston: De Gruyter, pp. 113-134. ISBN 9783110546316

Klinkenberg, Don, Colijn, Caroline and Didelot, Xavier (2019) Methods for outbreaks using genomic data. In: Held, Leonhard and Hens, Niel and O'Neill, Philip D. and Wallinga, Jacco, (eds.) Handbook of Infectious Disease Data Analysis. Chapman & Hall/CRC Handbooks of Modern Statistical Methods . Milton: CRC Press. ISBN 9781138626713

Mausz , Michaela A. and Chen, Yin (2019) Microbiology and ecology of methylated amine metabolism in marine ecosystems. In: Chistoserdova, Ludmila, (ed.) Methylotrophs and Methylotroph Communities. Caister Academic Press. ISBN 9781912530045

Conference Item

Dougan, Gordon, Dowson, Chris and Overington, John (2019) Meeting the discovery challenge of drug-resistant infections : progress and focusing resources. In: Next Generation Antibiotic Discovery Symposium, Jan 2018. Published in: Drug Discovery Today, 24 (2). pp. 452-461. ISSN 1359-6446. doi:10.1016/j.drudis.2018.11.015 (In Press)

Journal Item

Allaby, Robin G. (2019) Clonal crops show structural variation role in domestication. Nature Plants, 5 (9). pp. 915-916. doi:10.1038/s41477-019-0515-8

Boltze, Johannes and Jolkkonen, Jukka (2019) Safety evaluation of intra-arterial cell delivery in stroke patients—a framework for future trials. Annals of Translational Medicine, 7 (S8). S271. doi:10.21037/atm.2019.12.07

Zhang, Xian, Lai, Tongfei, Zhang, Pengcheng, Zhang, Xinlian, Yuan, Chen, Jin, Zhenhui, Li, Hongmei, Yu, Zhiming, Qin, Cheng, Tör, Mahmut, Ma, Ping, Cheng, Qi and Hong, Yiguo (2019) Mini review: Revisiting mobile RNA silencing in plants. Plant Science, 278 . pp. 113-117. doi:10.1016/j.plantsci.2018.10.025

Dataset

Mitchell, Daniel A., Fayter, Alice, Deller, Robert C., Hasan, Muhammad, Gutierrez-Marcos, José F. and Gibson, Matthew I. (2019) Data for Ice-recrystallization inhibiting polymers protect proteins against freeze-stress and enable glycerol-free cryostorage. [Dataset]

Scholarly Text

Liyanagedera, Sahan B. W. , Wheatley, Joseph P., Qian, Zhi-Gang, Sagona, Antonia P., Bai, Feng-Wu, Xiao-Xia, Xia and Kulkarni, Vishwesh V. (2019) Synthetic biology for engineering programmable soft materials [abstract]. UNSPECIFIED. (Unpublished)