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Number of items: 35.
Accou-Demartin, Marie , Gaborieau, Valérie , Song, Yajun , Roumagnac, Philippe , Marchou, Bruno , Achtman, Mark and Weill, François-Xavier (2011) Salmonella enterica serotype typhi with nonclassical quinolone resistance phenotype. Emerging Infectious Diseases , Volume 17 (Number 6). doi:10.3201/eid1706.101242 ISSN 1080-6059.
Achtman, Mark (2011) A broad brush, global overview of bacterial sexuality. PLoS Genetics, Volume 7 (Number 8). Article number e1002255. doi:10.1371/journal.pgen.1002255 ISSN 1553-7390.
Alam, Mohammad Tauqee, Medema, Marnix H, Takano, Eriko and Breitling, Rainer (2011) Comparative genome-scale metabolic modeling of actinomycetes: the topology of essential core metabolism. FEBS Letters, 585 (14). pp. 2389-94. doi:10.1016/j.febslet.2011.06.014 ISSN 0014-5793.
Alam, Mohammad Tauqee, Takano, Eriko and Breitling, Rainer (2011) Prioritizing orphan proteins for further study using phylogenomics and gene expression profiles in Streptomyces coelicolor. BMC Research Notes, 4 . p. 325. doi:10.1186/1756-0500-4-325 ISSN 1756-0500.
Alikhan, Nabil-Fareed, Petty, Nicola K., Ben Zakour, Nouri L. and Beatson, Scott A. (2011) BLAST Ring Image Generator (BRIG) : simple prokaryote genome comparisons. BMC Genomics, Volume 12 (Number 1). Article number 402. doi:10.1186/1471-2164-12-402 ISSN 1471-2164.
Amos, M. R., Sanchez-Contreras, M., Jackson, R. W., Munoz-Berbel, X., Ciche, T. A., Yang, G., Cooper, R. M. and Waterfield, Nicholas R. (2011) Influence of the photorhabdus luminescens phosphomannose isomerase gene, manA, on mannose utilization, exopolysaccharide structure, and biofilm formation. Applied and Environmental Microbiology, Volume 77 (Number 3). pp. 776-785. doi:10.1128/AEM.02326-10 ISSN 0099-2240.
Beatson, S. A., das Gracas de Luna, M., Bachmann, N. L., Alikhan, Nabil-Fareed, Hanks, K. R., Sullivan, M. J., Wee, B. A., Freitas-Almeida, A. C., dos Santos, P. A., de Melo, J. T. B., Squire, D. J. P., Cunningham, A. F., Fitzgerald, J. R. and Henderson, I. R. (2011) Genome sequence of the emerging pathogen aeromonas caviae. Journal of Bacteriology, Volume 193 (Number 5). pp. 1286-1287. doi:10.1128/JB.01337-10 ISSN 0021-9193.
Beatson, S. A., das Gracas de Luna, M., Bachmann, N. L. , Alikhan, Nabil-Fareed, Hanks, K. R., Sullivan, M. J., Wee, B. A., Freitas-Almeida, A. C., dos Santos, P. A., de Melo, J. T. B., Squire, D. J. P., Cunningham, A. F., Fitzgerald, J. R. and Henderson, I. R. (2011) Genome sequence of the emerging pathogen aeromonas caviae. Journal of Bacteriology, 193 (5). pp. 1286-1287. doi:10.1128/JB.01337-10 ISSN 0021-9193.
Chan, Yi-Wah, Mohr, Remus, Millard, Andrew D., Holmes, Antony B., Larkum, Anthony W. D., Whitworth, Anna L., Mann, Nicholas H., Scanlan, David J., Hess, Wolfgang R. and Clokie, Martha R. J. (2011) Discovery of cyanophage genomes which contain mitochondrial DNA polymerase. Molecular Biology and Evolution, Vol.28 (No.8). pp. 2269-2274. doi:10.1093/molbev/msr041 ISSN 0737-4038.
Clarke, D. J., Chaudhuri, R. R., Martin, H. M., Campbell, B. J., Rhodes, J. M., Constantinidou, Chrystala, Pallen, Mark J., Loman, Nicholas J., Cunningham, A. F., Browning, D. F. and Henderson, I. R. (2011) Complete genome sequence of the Crohn's disease-associated adherent-invasive escherichia coliStrain HM605. Journal of Bacteriology, Volume 193 (Number 17). Article number 4540. doi:10.1128/JB.05374-11 ISSN 0021-9193.
Croxall, G., Hale, J., Weston, V., Manning, G., Cheetham, P., Achtman, Mark and McNally, A. (2011) Molecular epidemiology of extraintestinal pathogenic Escherichia coli isolates from a regional cohort of elderly patients highlights the prevalence of ST131 strains with increased antimicrobial resistance in both community and hospital care settings. Journal of Antimicrobial Chemotherapy, Volume 66 (Number 11). pp. 2501-2508. doi:10.1093/jac/dkr349 ISSN 0305-7453.
Didelot, Xavier, Bowden, Rory, Street, Teresa, Golubchik, Tanya, Spencer, Chris, McVean, Gil, Sangal, Vartul, Anjum, Muna F., Achtman, Mark, Falush, Daniel and Donnelly, Peter (2011) Recombination and population structure in salmonella enterica. PLoS Genetics, Volume 7 (Number 7). Article number e1002191. doi:10.1371/journal.pgen.1002191 ISSN 1553-7390.
2320233; CA 2450939 A1 (2011) Cross-reactive monoclonal and polyclonal antibodies which recognize surface proteins from coagulase-negative staphylococci and staphylococcus aureus. [Online]. Available at: http://www.google.com.na/patents/CA2450939A1?cl=en.
US7968100 B2; CA2450939A1 (2011) Surface proteins from coagulase-negative staphylococci and Staphylococcus aureus that generate cross-reactive monoclonal and polyclonal antibodies. [Online]. Available at: http://www.google.com/patents/US7968100.
Haase, Jana K., Murphy, Ronan A., Choudhury, Kingshuk Roy and Achtman, Mark (2011) Revival of Seeliger's historical βSpecial Listeria Culture Collectionβ. Environmental Microbiology, Volume 13 (Number 12). pp. 3163-3171. doi:10.1111/j.1462-2920.2011.02610.x ISSN 1462-2912.
Halachev, Mihail R., Loman, Nicholas J. and Pallen, Mark J. (2011) Calculating orthologs in bacteria and archaea : a divide and conquer approach. PLoS One, Volume 6 (Number 12). Article number e28388. doi:10.1371/journal.pone.0028388 ISSN 1932-6203.
Hornsey, M., Loman, Nicholas J., Wareham, D. W., Ellington, M. J., Pallen, Mark J., Turton, J. F., Underwood, A., Gaulton, T., Thomas, C. P., Doumith, M., Livermore, D. M. and Woodford, N. (2011) Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy. Journal of Antimicrobial Chemotherapy, Volume 66 (Number 7). pp. 1499-1503. doi:10.1093/jac/dkr168 ISSN 0305-7453.
Islam, Md. Shahidul, Pallen, Mark J. and Busby, Stephen J. W. (2011) A cryptic promoter in theLEE1regulatory region of enterohaemorrhagicEscherichia coli: promoter specificity in AT-rich gene regulatory regions. Biochemical Journal, Volume 436 (Number 3). pp. 681-686. doi:10.1042/BJ20110260 ISSN 0264-6021.
Islam, Md. Shahidul, Pallen, Mark J. and Busby, Stephen J. W. (2011) A cryptic promoter in theLEE1regulatory region of enterohaemorrhagicEscherichia coli: promoter specificity in AT-rich gene regulatory regions. Biochemical Journal, 436 (3). pp. 681-686. doi:10.1042/BJ20110260 ISSN 0264-6021.
Laukkanen-Ninios, Riikka, Didelot, Xavier, Jolley, Keith A., Morelli, Giovanna, Sangal, Vartul, Kristo, Paula, Brehony, Carina, Imori, Priscilla F. M., Fukushima, Hiroshi, Siitonen, Anja, Tseneva, Galina, Voskressenskaya, Ekaterina, Falcao, Juliana P., Korkeala, Hannu, Maiden, Martin C. J., Mazzoni, Camila, Carniel, Elisabeth, Skurnik, Mikael and Achtman, Mark (2011) Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing. Environmental Microbiology, 13 (12). pp. 3114-3127. doi:10.1111/j.1462-2920.2011.02588.x ISSN 1462-2912.
Li, G., Tivendale, K. A., Liu, P., Feng, Y., Wannemuehler, Y., Cai, W., Mangiamele, P., Johnson, T. J., Constantinidou, Chrystala, Penn, C. W. and Nolan, L. K. (2011) Transcriptome analysis of avian pathogenic Escherichia coli O1 in chicken serum reveals adaptive responses to systemic infection. Infection and Immunity, Volume 79 (Number 5). pp. 1951-1960. doi:10.1128/IAI.01230-10 ISSN 0019-9567.
Medema, Marnix H, Alam, Mohammad T., Breitling, Rainer and Takano, Eriko (2011) The future of industrial antibiotic production: from random mutagenesis to synthetic biology. Bioengineered, 2 (4). pp. 230-3. ISSN 1949-1026.
Pallen, Mark J. (2011) Time to recognise that mitochondria are bacteria? Trends in Microbiology, Volume 19 (Number 2). pp. 58-64. doi:10.1016/j.tim.2010.11.001 ISSN 0966-842X.
Pallen, Mark J. (2011) The human microbiome and hostβpathogen interactions. In: Nelson, Karen, (ed.) Metagenomics of the Human Body. New York: Springer-Verlag New York, pp. 43-61. ISBN 9781441970886
Pallen, Mark J. and Loman, Nicholas J. (2011) Are diagnostic and public health bacteriology ready to become branches of genomic medicine? Genome Medicine, Volume 3 (Number 8). Article number 53. doi:10.1186/gm269 ISSN 1756-994X.
Poulter, Neil, Donaldson, Matthew, Mulley, Geraldine, Duque, Luis, Waterfield, Nicholas R., Shard, Alex G., Spencer, Steve, Jenkins, A. Tobias A. and Johnson, Andrew L. (2011) Plasma deposited metal Schiff-base compounds as antimicrobials. New Journal of Chemistry, Volume 35 (Number 7). pp. 1477-1484. doi:10.1039/c1nj20091g ISSN 1144-0546.
Quince, Christopher, Lanzen, Anders, Davenport, Russell J. and Turnbaugh, Peter J. (2011) Removing noise from pyrosequenced amplicons. BMC Bioinformatics, Volume 12 (Number 1). Article number 38. doi:10.1186/1471-2105-12-38 ISSN 1471-2105.
Ricci, V., Loman, Nicholas J., Pallen, Mark J., Ivens, Alasdair, Fookes, M., Langridge, G. C., Wain, J. and Piddock, Laura J. V. (2011) The TCA cycle is not required for selection or survival of multidrug-resistant Salmonella. Journal of Antimicrobial Chemotherapy, Volume 67 (Number 3). pp. 589-599. doi:10.1093/jac/dkr515 ISSN 0305-7453.
(2011) Open-source genomic analysis of shiga-toxinβproducing E. coli O104:H4. New England Journal Of Medicine , 365 (8). pp. 718-724. doi:10.1056/NEJMoa1107643 ISSN 0028-4793.
Shaw, Robert K., Lasa, IΓ±igo, GarcΓa, BegoΓ±a M., Pallen, Mark J., Hinton, Jay C. D., Berger, Cedric N. and Frankel, Gad (2011) Cellulose mediates attachment of Salmonella enterica Serovar Typhimurium to tomatoes. Environmental Microbiology Reports, Volume 3 (Number 5). pp. 569-573. doi:10.1111/j.1758-2229.2011.00263.x ISSN 1758-2229.
Tsompanidou, E., Sibbald, M. J. J. B., Chlebowicz, M. A., Dreisbach, A., Back, J. W., van Dijl, J. M., Buist, G. and Denham, Emma (2011) Requirement of the agr locus for colony spreading of staphylococcus aureus. Journal of Bacteriology, Volume 193 (Number 5). pp. 1267-1272. doi:10.1128/JB.01276-10 ISSN 0021-9193.
Vlisidou, Isabella, Waterfield, Nicholas R. and Wood, Will (2011) Elucidating the in vivo targets of photorhabdus toxins in real-time using drosophila embryos. In: Mylonakis , Eleftherios and Ausubel , Frederick M and Gilmore , Michael and Casadevall, Arturoll , (eds.) Recent Advances on Model Hosts. Advances in Experimental Medicine and Biology, Volume 710 . New York: Springer , pp. 49-57. ISBN 9781441956378
Vogler, Amy J., Chan, Fabien, Wagner, David M., Roumagnac, Philippe, Lee, Judy, Nera, Roxanne, Eppinger, Mark, Ravel, Jacques, Rahalison, Lila, Rasoamanana, Bruno W., Beckstrom-Sternberg, Stephen M., Achtman, Mark, Chanteau, Suzanne and Keim, Paul (2011) Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar. PLoS Neglected Tropical Diseases, Volume 5 (Number 9). Article number e1319. doi:10.1371/journal.pntd.0001319 ISSN 1935-2727.
Zarrilli, R., Giannouli, M., Rocco, F., Loman, Nicholas J., Haines, A. S., Constantinidou, Chrystala, Pallen, Mark J., Triassi, M. and Di Nocera, P. P. (2011) Genome sequences of three acinetobacter baumannii strains assigned to the multilocus sequence typing genotypes ST2, ST25, and ST78. Journal of Bacteriology, Volume 193 (Number 9). pp. 2359-2360. doi:10.1128/JB.00245-11 ISSN 0021-9193.
van der Ploeg, RenΓ©, MΓ€der, Ulrike, Homuth, Georg, Schaffer, Marc, Denham, Emma, Monteferrante, Carmine G., Miethke, Marcus, Marahiel, Mohamed A., Harwood, Colin R., Winter, Theresa, Hecker, Michael, Antelmann, Haike and Dijl, Jan Maarten van (2011) Environmental salinity determines the specificity and need for tat-dependent secretion of the YwbN protein in bacillus subtilis. PLoS One, Volume 6 (Number 3). Article number e18140. doi:10.1371/journal.pone.0018140 ISSN 1932-6203.