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Number of items: 39.
Journal Article
Abrahams, Katherine A., Cox, Jonathan A. G., Spivey, Vickey L., Loman, Nicholas J., Pallen, Mark J., Constantinidou, Chrystala, FernΓ‘ndez, Raquel, Alemparte, Carlos, RemuiΓ±Γ‘n, Modesto J., Barros, David, Ballell, Lluis and Besra, Gurdyal S. (2012) Identification of novel Imidazo[1,2-a]pyridine inhibitors targeting M. tuberculosis QcrB. PLoS One, Volume 7 (Number 12). Article number e52951. doi:10.1371/journal.pone.0052951 ISSN 1932-6203.
Achtman, Mark (2012) Insights from genomic comparisons of genetically monomorphic bacterial pathogens. Philosophical Transactions of the Royal Society B: Biological Sciences, Volume 367 (Number 1590). pp. 860-867. doi:10.1098/rstb.2011.0303 ISSN 0962-8436.
Achtman, Mark, Wain, John, Weill, François-Xavier, Nair, Satheesh, Zhou, Zhemin, Sangal, Vartul, Krauland, Mary G., Hale, James L., Harbottle, Heather, Uesbeck, Alexandra, Dougan, Gordon, Harrison, Lee H. and Brisse, Sylvain (2012) Multilocus sequence typing as a replacement for serotyping in salmonella enterica. PLoS Pathogens, Volume 8 (Number 6). Article number e1002776. doi:10.1371/journal.ppat.1002776 ISSN 1553-7374.
Akopian, Tatos , Kandror, Olga , Ravikiran M. Raju, Ravikiran , Unnikrishnan, Meera, Rubin, Eric J. and Goldberg, Alfred L. (2012) The active ClpP protease from M. tuberculosis is a complex composed of a heptameric ClpP1 and a ClpP2 ring. EMBO Journal, 31 (6). pp. 1529-1541. doi:10.1038/emboj.2012.5 ISSN 0261-4189.
Barnett, James P., Millard, Andrew D., Ksibe, Amira Z., Scanlan, David J., Schmid, Ralf and Blindauer, Claudia A. (2012) Mining genomes of marine cyanobacteria for elements of zinc homeostasis. Frontiers in Microbiology, Volume 3 . Article number 142. doi:10.3389/fmicb.2012.00142 ISSN 1664-302X.
(2012) Global network reorganization during dynamic adaptations of bacillus subtilis metabolism. Science, Volume 335 (Number 6072). pp. 1099-1103. doi:10.1126/science.1206871 ISSN 0036-8075.
Chan, Jacqueline, Halachev, Mihail R., Loman, Nicholas J., Constantinidou, Chrystala and Pallen, Mark J. (2012) Defining bacterial species in the genomic era : insights from the genus Acinetobacter. BMC Microbiology, 12 (1). 302. doi:10.1186/1471-2180-12-302 ISSN 1471-2180.
Chan, Jacqueline, Halachev, Mihail R., Yates, Emma, Smith, Grace and Pallen, Mark J. (2012) Whole-genome sequence of the emerging pathogen mycobacterium abscessus strain 47J26. Journal of Bacteriology, Volume 194 (Number 2). p. 549. doi:10.1128/JB.06440-11 ISSN 0021-9193.
Chan, Jacqueline, Pallen, Mark J., Oppenheim, Beryl and Constantinidou, Chrystala (2012) Genome sequencing in clinical microbiology. Nature Biotechnology, Volume 30 (Number 11). pp. 1068-1071. doi:10.1038/nbt.2410 ISSN 1087-0156.
Chan, Jacqueline, Pallen, Mark J., Oppenheim, Beryl and Constantinidou, Chrystala (2012) Genome sequencing in clinical microbiology. Nature Biotechnology, Volume 30 (Number 11). pp. 1068-1071. doi:10.1038/nbt.2410 ISSN 1087-0156.
Clark, G., Paszkiewicz, K., Hale, J., Weston, V., Constantinidou, Chrystala, Penn, C., Achtman, Mark and McNally, A. (2012) Genomic analysis uncovers a phenotypically diverse but genetically homogeneous Escherichia coli ST131 clone circulating in unrelated urinary tract infections. Journal of Antimicrobial Chemotherapy, Volume 67 (Number 4). pp. 868-877. doi:10.1093/jac/dkr585 ISSN 0305-7453.
Constantinidou, Chrystala, Sergeant, Martin J., Cogan, Tristan, Penn, Charles W. and Pallen, Mark J. (2012) High-throughput sequencing of 16S rRNA gene amplicons : effects of extraction procedure, primer length and annealing temperature. PLoS One, Volume 7 (Number 5). Article number e38094. doi:10.1371/journal.pone.0038094 ISSN 1932-6203.
Ehrt, Sabine, Raju, Ravikiran M., Unnikrishnan, Meera, Rubin, Daniel H. F., Krishnamoorthy, Vidhya, Kandror, Olga, Akopian, Tatos N., Goldberg, Alfred L. and Rubin, Eric J. (2012) Mycobacterium tuberculosis ClpP1 and ClpP2 function together in protein degradation and are required for viability in vitro and during infection. PLoS Pathogens, Volume 8 (Number 2). Article number e1002511. doi:10.1371/journal.ppat.1002511 ISSN 1553-7374.
Fabre, Laëtitia, Zhang, Jian, Guigon, Ghislaine, Le Hello, Simon, Guibert, Véronique, Accou-Demartin, Marie, de Romans, Saïana, Lim, Catherine, Roux, Chrystelle, Passet, Virginie, Diancourt, Laure, Guibourdenche, Martine, Issenhuth-Jeanjean, Sylvie, Achtman, Mark, Brisse, Sylvain, Sola, Christophe and Weill, François-Xavier (2012) CRISPR typing and subtyping for improved laboratory surveillance of salmonella infections. PLoS One, Volume 7 (Number 5). Article number e36995. doi:10.1371/journal.pone.0036995 ISSN 1932-6203.
Haase, J. K., Brown, D. J., Weill, F.-X., Mather, H., Foster, G., Brisse, S., Wain, J. and Achtman, Mark (2012) Population genetic structure of 4,12:a:- Salmonella enterica strains from harbor porpoises. Applied and Environmental Microbiology, 78 (24). pp. 8829-8833. doi:10.1128/AEM.02310-12 ISSN 0099-2240.
Haase, Jana K., Brown, D. J., Weill, F.-X., Mather, H., Foster, G., Brisse, S., Wain, J. and Achtman, Mark (2012) Population genetic structure of 4,12:a :- salmonella enterica strains from harbor porpoises. Applied and Environmental Microbiology, 78 (24). pp. 8829-8833. doi:10.1128/AEM.02310-12 ISSN 0099-2240.
Holmes, Ian, Harris, Keith and Quince, Christopher (2012) Dirichlet multinomial mixtures : generative models for microbial metagenomics. PLoS One, Volume 7 (Number 2). Article number e30126. doi:10.1371/journal.pone.0030126 ISSN 1932-6203.
Islam, Md. Shahidul, Shaw, Robert K., Frankel, Gad, Pallen, Mark J. and Busby, Stephen J. W. (2012) Translation of a minigene in the 5β² leader sequence of the enterohaemorrhagic Escherichia coli LEE1 transcription unit affects expression of the neighbouring downstream gene. Biochemical Journal, 441 (1). pp. 247-253. doi:10.1042/BJ20110912 ISSN 0264-6021.
Kochar, M., Crosatti, M., Harrison, E. M., Rieck, B., Chan, J., Constantinidou, Chrystala, Pallen, Mark J., Ou, H.-Y. and Rajakumar, Kumar (2012) Deletion of TnAbaR23 results in both expected and unexpected antibiogram changes in a multidrug-resistant acinetobacter baumannii strain. Antimicrobial Agents and Chemotherapy, volume 56 (Number 4). pp. 1845-1853. doi:10.1128/AAC.05334-11 ISSN 0066-4804.
Liu, B., Hu, B., Zhou, Zhemin, Guo, D., Guo, X., Ding, P., Feng, L. and Wang, L. (2012) A novel non-homologous recombination-mediated mechanism for Escherichia coli unilateral flagellar phase variation. Nucleic Acids Research, 40 (10). pp. 4530-4538. doi:10.1093/nar/gks040 ISSN 0305-1048.
Liu, Wei, Fang, Liurong, Li, Mao, Li, Sha, Guo, Shaohua, Luo, Rui, Feng, Zhixin, Li, Bin, Zhou, Zhemin, Shao, Guoqing, Chen, Huanchun and Xiao, Shaobo (2012) Comparative genomics of mycoplasma : analysis of conserved essential genes and diversity of the pan-genome. PLoS One, 7 (4). e35698. doi:10.1371/journal.pone.0035698 ISSN 1932-6203.
Loman, Nicholas J., Constantinidou, Chrystala, Chan, Jacqueline, Halachev, Mihail R., Sergeant, Martin J., Penn, Charles W., Robinson, Esther R. and Pallen, Mark J. (2012) High-throughput bacterial genome sequencing : an embarrassment of choice, a world of opportunity. Nature Reviews Microbiology, 10 (9). pp. 599-606. doi:10.1038/nrmicro2850 ISSN 1740-1526.
Loman, Nicholas J., Misra, Raju V., Dallman, Timothy J, Constantinidou, Chrystala, Gharbia, Saheer E, Wain, John and Pallen, Mark J. (2012) Performance comparison of benchtop high-throughput sequencing platforms. Nature Biotechnology, 30 (6). p. 562. doi:10.1038/nbt0612-562f ISSN 1087-0156.
Loman, Nicholas J., Misra, Raju V., Dallman, Timothy J., Constantinidou, Chrystala, Gharbia, Saheer E., Wain, John and Pallen, Mark J. (2012) Performance comparison of benchtop high-throughput sequencing platforms. Nature Biotechnology, Volume 30 (Number 5). pp. 434-439. doi:10.1038/nbt.2198 ISSN 1087-0156.
Moodley, Yoshan, Linz, Bodo, Bond, Robert P., Nieuwoudt, Martin, Soodyall, Himla, Schlebusch, Carina M., BernhΓΆft, Steffi, Hale, J. (James), Suerbaum, Sebastian, Mugisha, Lawrence, Van der Merwe, Schalk W. and Achtman, Mark (2012) Age of the association between Helicobacter pylori and man. PLoS Pathogens, Volume 8 (Number 5). Article number e1002693. doi:10.1371/journal.ppat.1002693 ISSN 1553-7374.
(2012) Condition-dependent transcriptome reveals high-level regulatory architecture in bacillus subtilis. Science, Volume 335 (Number 6072). pp. 1103-1106. doi:10.1126/science.1206848 ISSN 0036-8075.
Shepard, S. M., Danzeisen, J. L., Isaacson, R. E., Seemann, T., Achtman, Mark and Johnson, T. J. (2012) Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic escherichia coli. Journal of Bacteriology, Volume 194 (Number 2). pp. 395-405. doi:10.1128/JB.06225-11 ISSN 0021-9193.
Thanwisai, Aunchalee, Tandhavanant, Sarunporn, Saiprom, Natnaree, Waterfield, Nicholas R., Ke Long, Phan, Bode, Helge B., Peacock, Sharon J. and Chantratita, Narisara (2012) Diversity of Xenorhabdus and Photorhabdus spp. and their symbiotic entomopathogenic nematodes from Thailand. PLoS One, Volume 7 (Number 9). Article number e43835. doi:10.1371/journal.pone.0043835 ISSN 1932-6203.
Tsompanidou, Eleni, Denham, Emma, Sibbald, Mark J. J. B., Yang, Xiao-mei, Seinen, Jolien, Friedrich, Alexander W., Buist, Girbe and Dijl, Jan Maarten van (2012) The sortase A substrates FnbpA, FnbpB, ClfA and ClfB antagonize colony spreading of staphylococcus aureus. PLoS One, Volume 7 (Number 9). Article number e44646. doi:10.1371/journal.pone.0044646 ISSN 1932-6203.
Unnikrishnan, Meera, Rappuoli, Rino and Serruto, Davide (2012) Recombinant bacterial vaccines. Current Opinion in Immunology, Volume 24 (Number 3). pp. 337-342. doi:10.1016/j.coi.2012.03.013 ISSN 09527915.
Van Wyhe, John and Pallen, Mark J. (2012) The βAnnie Hypothesis' : did the death of His daughter cause Darwin to βGive up Christianityβ? Centaurus, Volume 54 (Number 2). pp. 105-123. doi:10.1111/j.1600-0498.2012.00256.x ISSN 0008-8994.
Watson, Michael, OβFarrell, Brian, Haase, Jana K., Velayudhan, Vimalkumar, Murphy, Ronan A. and Achtman, Mark (2012) Transforming microbial genotyping : a robotic pipeline for genotyping bacterial strains. PLoS ONE, 7 (10). e48022. doi:10.1371/journal.pone.0048022 ISSN 1932-6203.
Williams, Tiffany M., Loman, Nicholas J., Ebruke, Chinelo, Musher, Daniel M., Adegbola, Richard A., Pallen, Mark J., Weinstock, George M. and Antonio, Martin (2012) Genome analysis of a highly virulent serotype 1 strain of streptococcus pneumoniae from West Africa. PLoS One, Volume 7 (Number 10). Article number e26742. doi:10.1371/journal.pone.0026742 ISSN 1932-6203.
Xiong, Jie, Lu, Xingyi, Zhou, Zhemin, Chang, Yue, Yuan, Dongxia, Tian, Miao, Zhou, Zhigang, Wang, Lei, Fu, Chengjie, Orias, Eduardo and Miao, Wei (2012) Transcriptome analysis of the model protozoan, tetrahymena thermophila, using deep RNA sequencing. PLoS One, 7 (2). e30630. doi:10.1371/journal.pone.0030630 ISSN 1932-6203.
Xiong, Yanwen, Wang, Ping, Lan, Ruiting, Ye, Changyun, Wang, Hua, Ren, Jun, Jing, Huaiqi, Wang, Yiting, Zhou, Zhemin, Bai, Xuemei, Cui, Zhigang, Luo, Xia, Zhao, Ailan, Wang, Yan, Zhang, Shaomin, Sun, Hui, Wang, Lei and Xu, Jianguo (2012) A novel escherichia coli O157:H7 clone causing a major hemolytic uremic syndrome outbreak in China. PLoS One, 7 (4). e36144. doi:10.1371/journal.pone.0036144 ISSN 1932-6203.
Yang, Guowei, HernΓ‘ndez-RodrΓguez, Carmen Sara, Beeton, Michael L., Wilkinson, Paul, ffrench-Constant, Richard H. and Waterfield, Nicholas R. (2012) Pdl1 is a putative lipase that enhances photorhabdus toxin complex secretion. PLoS Pathogens, 8 (5). e1002692. doi:10.1371/journal.ppat.1002692 ISSN 1553-7374.
Zweers, Jessica C., Nicolas, Pierre, Wiegert, Thomas, Dijl, Jan Maarten van and Denham, Emma (2012) Definition of the ΟW regulon of Bacillus subtilis in the absence of stress. PLoS One, Volume 7 (Number 11). Article number e48471. doi:10.1371/journal.pone.0048471 ISSN 1932-6203.
Book Item
Vlisidou, Isabella, Waterfield, Nicholas R. and Wood, Will (2012) Elucidating the in vivo targets of photorhabdus toxins in real-time using drosophila embryos. In: Mylonakis , Eleftherios and Ausubel , Frederick M. and Gilmore , Michael and Casadevall , Arturo , (eds.) Recent Advances on Model Hosts. Advances in Experimental Medicine and Biology, 710 . Springer New York, pp. 49-57. ISBN 9781441956378
Conference Item
Nell, S., Eibach, D., Montano, V., Nkwesheu, A., Maady, A., Linz, B., Moodley, Y., Achtman, Mark and Suerbaum, S. (2012) Population structure of Helicobacter pylori among ethnic groups in Cameroon. In: 64. Jahrestagung der Deutschen Gesellschaft fur Hygiene und Mikrobiologie (DGHM). Published in: International Journal of Medical Microbiology, 302 p. 116. doi:10.1016/j.ijmm.2012.08.001 ISSN 1438-4221.