The Library
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Number of items: 24.
A
Achtman, Mark (2016) How old are bacterial pathogens? Proceeding of the Royal Society B, 286 (1836). ISSN 0962-8452.
Anonye, Blessing (2016) General commentary on : alternatives to antibiotic growth promoters in animals. Frontiers in Veterinary Science, 3 . 74. doi:10.3389/fvets.2016.00074 ISSN 2297-1769.
B
Bowen, Emma J., Parsons, Todd L., Curtis, Thomas P., Plotkin, Joshua B. and Quince, Christopher (2016) Integrating theory and experiment to explain the breakdown of population synchrony in a complex microbial community. Working Paper. Coventry, UK : University of Warwick, Warwick Medical School. (Unpublished)
C
Castagnola, AnaΓ―s, Mulley, Geraldine, Davis, Nathaniel J. L. K., Waterfield, Nicholas R. and Stock, S Patricia (2016) Transcript abundance of Photorhabdus Insect-Related (Pir) toxin in Manduca sexta and Galleria mellonella infections. Toxins, 8 (10). 287. doi:10.3390/toxins8100287 ISSN 2072-6651.
Cho, Si-Kyung, Kim, Dong-Hoon, Quince, Christopher, Im, Wan-Taek, Oh, Sae-Eun and Shin, Seung Gu (2016) Low-strength ultrasonication positively affects methanogenic granules toward higher AD performance : implications from microbial community shift. Ultrasonics Sonochemistry, 32 . pp. 198-203. doi:10.1016/j.ultsonch.2016.03.010 ISSN 1350-4177.
D
Dean, Samuel, Moreira-Leite, Flavia, Varga, Vladimir and Gull, Keith (2016) Cilium transition zone proteome reveals compartmentalization and differential dynamics of ciliopathy complexes. Proceedings of the National Academy of Sciences of the United States of America, 113 (35). E5135-E5143. doi:10.1073/pnas.1604258113 ISSN 0027-8424.
Dyer, Philip, Dean, Samuel and Sunter, Jack (2016) High-throughput Gene Tagging in Trypanosoma brucei. Journal of Visualized Experiments (114). doi:10.3791/54342 ISSN 1940-087X.
DβAmore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G., Gregory, Richard, Darby, Alistair C., Shakya, Migun, Podar, Mircea, Quince, Christopher and Hall, Neil (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17 (1). doi:10.1186/s12864-015-2194-9 ISSN 1471-2164.
G
Gerasimidis, Konstantinos, Bertz, Martin, Quince, Christopher, Brunner, Katja, Bruce, Alanna, Combet, Emilie, Calus, Szymon, Loman, Nick and Ijaz, Umer Zeeshan (2016) The effect of DNA extraction methodology on gut microbiota research applications. BMC Research Notes, 9 (1). 365. doi:10.1186/s13104-016-2171-7 ISSN 1756-0500.
Gregor, Ivan, DrΓΆge, Johannes, Schirmer, Melanie, Quince, Christopher and McHardy, Alice C. (2016) PhyloPythiaS+ : a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes. PeerJ, 4 . e1603. doi:10.7717/peerj.1603 ISSN 2167-8359.
H
Haig, Sarah-Jane, Gauchotte-Lindsay, Caroline, Collins, Gavin and Quince, Christopher (2016) Bioaugmentation mitigates the impact of estrogen on coliform-grazing protozoa in slow sand filters. Environmental Science & Technology, 50 (6). pp. 3101-3110. doi:10.1021/acs.est.5b05027 ISSN 0013-936X.
J
Jones, Oliver A. H., Lear, Gavin, Welji, Aalim M., Collins, Gavin and Quince, Christopher (2016) Community metabolomics in environmental microbiology. In: Beale, D. and Kouremenos, K. and Palombo, E., (eds.) Microbial Metabolomics. Cham: Springer, pp. 199-224. ISBN 9783319463247
N
Nichols, Ben and Quince, Christopher (2016) Simera : modelling the PCR process to simulate realistic chimera formation. Working Paper. bioRxiv: Cold Spring Harbour Laboratory. (Unpublished)
P
Pitt, Frances Diana, Millard, Andrew D., Ostrowski, Martin, Dervish, Suat, Mazard, Sophie, Paulsen, Ian T., Zubkov, Mikhail V. and Scanlan, David J. (2016) A sample-to-sequence protocol for genus targeted transcriptomic profiling : application to marine Synechococcus. Frontiers in Microbiology, 7 . 1592. doi:10.3389/fmicb.2016.01592 ISSN 1664-302X.
Ploss, Tina N., Reilman, Ewoud, Monteferrante, Carmine G., Denham, Emma, Piersma, Sjouke, Lingner, Anja, VehmaanperΓ€, Jari, Lorenz, Patrick and van Dijl, Jan Maarten (2016) Homogeneity and heterogeneity in amylase production by Bacillus subtilis under different growth conditions. Microbial Cell Factories, 15 (1). doi:10.1186/s12934-016-0455-1 ISSN 1475-2859.
Puxty, Richard J., Millard, Andrew D., Evans, David J. and Scanlan, David J. (2016) Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology, 26 (12). pp. 1585-1589. doi:10.1016/j.cub.2016.04.036 ISSN 0960-9822.
Q
Quince, Christopher, Connelly, Stephanie, Raguideau, Sebastien, Alneberg, Johannes, Shin, Seung Gu, Collins, Gavin and Eren, A. Murat (2016) De novo extraction of microbial strains from metagenomes reveals intra-species niche partitioning. Working Paper. bioRxiv: Cold Spring Harbour Laboratory. (Unpublished)
R
Ray, Jessica L., Althammer, Julia, Skaar, Katrine S., Simonelli, Paolo, Larsen, Aud, Stoecker, Diane, Sazhin, Andrey, Ijaz, Umer Z., Quince, Christopher, Nejstgaard, Jens C., Frischer, Marc, Pohnert, Georg and Troedsson, Christofer (2016) Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities. Molecular Ecology, 25 (21). pp. 5585-5602. doi:10.1111/mec.13844 ISSN 0962-1083.
Rihtman, Branko, Meaden, Sean, Clokie, Martha R. J., Koskella, Britt and Millard, Andrew D. (2016) Assessing Illumina technology for the high-throughput sequencing of bacteriophage genomes. PeerJ, 4 . pp. 1-21. e2055. doi:10.7717/peerj.2055 ISSN 2167-8359.
Rognes, TorbjΓΈrn, Flouri, TomΓ‘Ε‘, Nichols, Ben, Quince, Christopher and MahΓ©, FrΓ©dΓ©ric (2016) VSEARCH : a versatile open source tool for metagenomics. PeerJ, 4 . e2584. doi:10.7717/peerj.2584 ISSN 2167-8359.
S
Sinclair, Lucas, Ijaz, Umer Z., Jensen, Lars Juhl, Coolen, Marco J.L., Gubry-Rangin, Cecile, ChroΕΓ‘kovΓ‘, Alica, Oulas, Anastasis, Pavloudi, Christina, Schnetzer, Julia, Weimann, Aaron, Ijaz, Ali, Eiler, Alexander, Quince, Christopher and Pafilis, Evangelos (2016) Seqenv : linking sequences to environments through text mining. PeerJ, 4 . e2690. doi:10.7717/peerj.2690 ISSN 2167-8359.
Svolos, V., Hansen, R., Hughes, K., Ijaz, U. Z., Quince, Christopher, Gaya, D., Russell, R. and Gersimidis, K. (2016) OP018. The impact of βCrohnβs Disease-TReatment-with-EATingβ diet (CD-TREAT diet) and exclusive enteral nutrition on healthy gut bacteria metabolism. In: UNSPECIFIED. Published in: Journal of Crohn's and Colitis, 10 (supplement 1). S14.2-S15. doi:10.1093/ecco-jcc/jjw019.017 ISSN 1873-9946.
T
Torondel, Belen, Ensink, Jeroen H.J., Gundogdu, Ozan, Ijaz, Umer Zeeshan, Parkhill, Julian, Abdelahi, Faraji, Nguyen, Viet-Anh, Sudgen, Steven, Gibson, Walter, Walker, Alan W. and Quince, Christopher (2016) Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines. Microbial Biotechnology, 9 (2). pp. 209-223. doi:10.1111/1751-7915.12334 ISSN 1751-7907.
W
Wailan, Alexander M., Sidjabat, Hanna E., Yam, Wan Keat, Alikhan, Nabil-Fareed, Petty, Nicola K., Sartor, Anna L., Williamson, Deborah A., Forde, Brian M., Schembri, Mark A., Beatson, Scott A., Paterson, David L., Walsh, Timothy R. and Partridge, Sally R. (2016) Mechanisms involved in acquisition of blaNDM genes by IncA/C2 and IncFIIY plasmids. Antimicrobial Agents and Chemotherapy, 60 (7). pp. 4082-4088. doi:10.1128/AAC.00368-16 ISSN 0066-4804.