Journal Article

Akman, Ozgur E., Rand, D. A. (David A.), Brown, Paul E. and Millar, A. J. (Andrew J.). (2010) Robustness from flexibility in the fungal circadian clock. BMC Systems Biology, Vol.4 (No.88). ISSN 1752-0509

Du, Cheng-Jin, Marcello, Marco, Spiller, David G., White, Michael R. H. and Bretschneider, Till. (2010) Interactive segmentation of clustered cells via geodesic commute distance and constrained density weighted nystrom method. Cytometry Part A, Vol.77A (No.12). pp. 1137-1147. ISSN 1552-4922

Edwards, Kieron D., Akman, Ozgur E., Knox, Kirsten, Lumsden, P. J., Thomson, Adrian W., Brown, Paul E., Pokhilko, Alexandra, Kozma-Bognar, Laszlo, Nagy, Ferenc, 1952-, Rand, D. A. (David A.) and Millar, A. J. (Andrew J.). (2010) Quantitative analysis of regulatory flexibility under changing environmental conditions. Molecular Systems Biology, Vol.6 (No.424). ISSN 1744-4292

Jenkins, Dafyd J. and Stekel, Dov J. (2010) Stochasticity versus determinism: consequences for realistic gene regulatory network modelling and evolution. Journal of Molecular Evolution, Vol.70 (No.2). pp. 215-231. ISSN 0022-2844

Jenkins, Dafyd J. and Stekel, Dov, 1971-. (2010) De novo evolution of complex, global and hierarchical gene regulatory mechanisms. Journal of Molecular Evolution, Vol.71 (No.2). pp. 128-140. ISSN 0022-2844

Jiang, Hui, Wang, Fan, Dyer, Nigel and Wong, Wing Hung. (2010) CisGenome browser: a flexible tool for genomic data visualization. Bioinformatics, Vol.26 (No.14). pp. 1781-1782. ISSN 1367-4803

Juárez, Miguel A. and Steel, Mark F. J.. (2010) Non-Gaussian dynamic Bayesian modelling for panel data. Journal of Applied Econometrics, Vol.25 (No.7). pp. 1128-1154. ISSN 0883-7252

Komorowski, Michal, Finkenstädt, Bärbel and Rand, D. A. (David A.). (2010) Using a single fluorescent reporter gene to infer half-life of extrinsic noise and other parameters of gene expression. Biophysical Journal, Vol.98 (No.12). pp. 2759-2769. ISSN 0006-3495

Koohy, Hashem, Dyer, Nigel, Reid, John E., Koentges, Georgy and Ott, Sascha. (2010) An alignment-free model for comparison of regulatory sequences. Bioinformatics, Vol.26 (No.19). pp. 2391-2397. ISSN 1367-4803

Köhler, Karsten, Xiong, Shiqiu, Brzostek, Joanna, Mehrabi, Maryam, Eissmann, Philipp, Harrison, Alice, Cordoba, Shaun-Paul, Oddos, Stephane, Miloserdov, Vladimir, Gould, Keith, Burroughs, Nigel John, Van der Merwe, Philip Anton and Davis, Daniel M.. (2010) Matched sizes of activating and inhibitory receptor/ligand pairs are required for optimal signal integration by human Natural Killer cells. PL o S One, Vol.5 (No.11). e15374. ISSN 1932-6203

Malik, Naveed A. and Richardson, Magnus J. E.. (2010) Shape dependence of the neuronal response to alternating electrical fields. BMC Neuroscience, Vol.11 (Suppl.1, no.P156). ISSN 1471-2202

Martens, Magni, Veflingstad, Siren R., Plahte, Erik, Bertrand, Dominique and Martens, Harald. (2010) A sensory scientific approach to visual pattern recognition of complex biological systems. Food Quality and Preference, Vol.21 (No.8). pp. 977-986. ISSN 0950-3293

Morrissey, E. R., Juárez, Miguel A., Denby, K. J. and Burroughs, Nigel John. (2010) On reverse engineering of gene interaction networks using time course data with repeated measurements. Bioinformatics, Vol.26 (No.18). pp. 2305-2312. ISSN 1367-4803

. (2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (Article 10). ISSN 1471-2164

. (2010) HerMES: SPIRE galaxy number counts at 250, 350, and 500 mu m. Astronomy & Astrophysics, Vol.518 . Article no. L21. ISSN 0004-6361

. (2010) HerMES : SPIRE galaxy number counts at 250, 350, and 500 μm. Astronomy & Astrophysics, Vol.518 (No.L21). ISSN 0004-6361

Paszek, Pawel, Ryan, Sheila, Ashall, Louise, Sillitoe, Kate, Harper, Claire V., Spiller, David G., Rand, D. A. (David A.) and White, Michael R. H.. (2010) Population robustness arising from cellular heterogeneity. Proceedings of the National Academy of Sciences of the United States of America, Vol.107 (No.25). pp. 11644-11649. ISSN 0027-8424

Picot, Emma, Krusche, Peter, Tiskin, Alexander, Carré, Isabelle A. and Ott, Sascha. (2010) Evolutionary analysis of regulatory sequences (EARS) in plants. Plant Journal, Vol.64 (No.1). pp. 165-176. ISSN 0960-7412

Pinto, A. A., Burroughs, Nigel John, Ferreira, M. and Oliveira, B. M. P. M.. (2010) Dynamics of immunological models. Acta Biotheoretica, Vol.58 (No.4). pp. 391-404. ISSN 0001-5342

Reid, J. E. (John E.), Evans, Kenneth J., Dyer, Nigel, Wernisch, Lorenz and Ott, Sascha. (2010) Variable structure motifs for transcription factor binding sites. BMC Genomics, Vol.11 (Article 30). ISSN 1471-2164

Reid, John E., Evans, Kenneth J., Dyer, Nigel, Wernisch, Lorenz and Ott, Sascha. (2010) Variable structure motifs for transcription factor binding sites. BMC Genomics, Vol.11 . Article: 30. ISSN 1471-2164

Richardson, Magnus J. E. and Swarbrick, Rupert. (2010) Firing-rate response of a neuron receiving excitatory and inhibitory synaptic shot noise. Physical Review Letters, Vol.105 (No.17). Article no. 178102. ISSN 0031-9007

Sanchez-Romero, Maria Antonia, Busby, Stephen J. W., Dyer, Nigel, Ott, Sascha, Millard, Andrew D. and Grainger, David C.. (2010) Dynamic distribution of SeqA protein across the chromosome of Escherichia coli K-12. mBio, Vol.1 (No.1). Article no. 00012-10. ISSN 2150-7511

Savage, Richard S., Ghahramani, Zoubin, Griffin, Jim E., De la Cruz, Bernard J. and Wild, David L.. (2010) Discovering transcriptional modules by Bayesian data integration. Bioinformatics, Vol.26 (No.12). pp. 158-167. ISSN 1367-4803

Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M.. (2010) A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. Lecture Notes in Computer Science, Vol.5541 . pp. 201-216. ISSN 0302-9743

Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M.. (2010) A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. Journal of Computational Biology , Vol.17 (No.3). pp. 355-367. ISSN 1066-5277

Stirk, Emily R., Lythe, Grant, Berg, Hugo van den, 1968-, Hurst, Gareth A. D. and Molina-Paris, Carmen. (2010) The limiting conditional probability distribution in a stochastic model of T cell repertoire maintenance. Mathematical Biosciences, Vol.224 (No.2). pp. 74-86. ISSN 0025-5564

Stirk, Emily R., Lythe, Grant, Berg, Hugo van den, 1968- and Molina-Paris, Carmen. (2010) Stochastic competitive exclusion in the maintenance of the naïve T cell repertoire. Journal of Theoretical Biology, Vol.265 (No.3). pp. 396-410. ISSN 0022-5193

Sánchez-Romero, María Antonia, Busby, S. (Stephen), Dyer, Nigel, Ott, Sascha, Millard, Andrew D. and Grainger, David C.. (2010) Dynamic distribution of SeqA protein across the chromosome of Escherichia coli K-12. mBio, Vol.1 (No.1). ISSN 2150-7511

Turner, David A., Paszek, Pawel, Woodcock, Dan J., Nelson, David E., Horton, Caroline A., Wang, Yunjiao, Spiller, David G., Rand, D. A. (David A.), White, Michael R. H. and Harper, Claire V.. (2010) Physiological levels of TNFα stimulation induce stochastic dynamics of NF-kB responses in single living cells. Journal of Cell Science, Vol.123 (No.16). pp. 2834-2843. ISSN 0021-9533

Vance, Keith W., Shaw, Heather M., Rodriguez, Mercedes, Ott, Sascha and Goding, Colin R.. (2010) The retinoblastoma protein modulates Tbx2 functional specificity. Molecular Biology of the Cell, Vol.21 (No.15). pp. 2770-2779. ISSN 1059-1524

Wooldridge, Linda, Laugel, Bruno, Ekeruche, Julia, Clement, Mathew, Berg, Hugo van den, 1968-, Price, David A. and Sewell, Andrew K.. (2010) CD8 controls T cell cross-reactivity. Journal of Immunology, Vol.185 (No.8). pp. 4625-4632. ISSN 0022-1767

Yang, J., Koehler, K., Davis, D. M. and Burroughs, Nigel John. (2010) An improved strip FRAP method for estimating diffusion coefficients : correcting for the degree of photobleaching. Journal of Microscopy, Vol.238 (No.3). pp. 240-253. ISSN 0022-2720

Conference Item

Bari, M. F., Snead, David, Moore, Jonathan D., Zehnder, Daniel and Brown, Helen (Helen E.) (2010) Analysis of expression array data to identify biomarkers specific for small cell lung cancer. In: 1st Meeting on Molecular Origins of Lung Cancer – Prospects for Personalized Prevention and Therapy, San Diego, California, January 10-14, 2010. Published in: Journal of Thoracic Oncology, Vol.5 (No.6 Suppl. 3). S256-S256.

Ekeruche, J., Wooldridge, L., Laugel, B., Clement, M., Berg, Hugo van den, 1968-, Price, D. and Sewell, A. (2010) CD8 controls T cell cross-reactivity. In: Annual Congress of the British-Society-for-Immunology, Liverpool, UK, 06-10 Dec 2010. Published in: Immunology, Vol.131 (Suppl. 1). pp. 172-173.

Krusche, Peter and Tiskin, Alexander (2010) Parallel longest increasing subsequences in scalable time and memory. In: 8th International Conference on Parallel Processing and Applied Mathematics, Wroclaw, Poland, September 13-16, 2009. Published in: Lecture Notes in Computer Science, Vol.6067 pp. 176-185.

Lissina, A., Ladell, K., Berg, Hugo van den, 1968-, Price, D. A., Sewell, A. K. and Wooldridge, L. (2010) Protein kinase inhibitors substantially improve the physical detection of T-cells with peptide-MHC tetramers. In: Annual Congress of the British-Society-for-Immunology, Liverpool, England, 06-10 Dec 2010. Published in: Immunology, Vol.131 (Suppl. 1). p. 117.

Journal Item

Spiller, David G., Wood, Christopher D., Rand, D. A. (David A.) and White, Michael R. H. (2010) Measurement of single-cell dynamics. Nature, Vol.465 (No.7299). pp. 736-745. ISSN 0028-0836