Journal Article

Stork, Gilbert, Yamashita, Ayako, Hanson, Robert M., Phan, Ly, Phillips, Eifion, Dubé, Daniel, Bos, Pieter H., Clark, Andrew J., Gough, Maxwell, Greenlee, Mark L., Jiang, Yimin, Jones, Keith, Kitamura, Masato, Leonard, John, Liu, Tongzhu, Parsons, Philip J. and Venkatesan, Aranapakam M. (2017) Synthetic study toward total synthesis of (±)-Germine : synthesis of (±)-4-methylenegermine. Organic Letters, 19 (19). pp. 5150-5153. doi:10.1021/acs.orglett.7b02434 ISSN 1523-7060.

Gutierrez-Barragan, Felipe, Ithapu, Vamsi K., Hinrichs, Chris, Maumet, Camille, Johnson, Sterling C., Nichols, Thomas E. and Singh, Vikas (2017) Accelerating permutation testing in voxel-wise analysis through subspace tracking : a new plugin for SnPM. NeuroImage, 159 . pp. 79-98. doi:10.1016/j.neuroimage.2017.07.025 ISSN 1053-8119.

(2017) Global respiratory syncytial virus-associated mortality in young children (RSV GOLD) : a retrospective case series. The Lancet Global Health, 5 (10). e984-e991. doi:10.1016/s2214-109x(17)30344-3 ISSN 2214-109X.

Tarabra, Elena, An Lee, Ting-Wen, Zammit, Victor A., Vatish, Manu, Yamada, Eijiro, Pessin, Jeffrey E. and Bastie, Claire C. (2017) Differential activation of Fyn kinase distinguishes saturated and unsaturated fats in mouse macrophages. Oncotarget . doi:10.18632/oncotarget.21258 ISSN 1949-2553.

GBD 2016 Disease and Injury Incidence and Prevalence Collaborators (Including: Gill, Paramjit and Uthman, Olalekan A.). (2017) Global, regional, and national incidence, prevalence, and years lived with disability for 328 diseases and injuries for 195 countries, 1990–2016 : a systematic analysis for the Global Burden of Disease Study 2016. The Lancet, 390 (10100). pp. 1211-1259. doi:10.1016/S0140-6736(17)32154-2 ISSN 0140-6736.

GBD 2016 Mortality Collaborators (Including:

). (2017) Global, regional, and national under-5 mortality, adult mortality, age-specific mortality, and life expectancy, 1970–2016 : a systematic analysis for the Global Burden of Disease Study 2016. The Lancet, 390 (10100). pp. 1084-1150. doi:10.1016/S0140-6736(17)31833-0 ISSN 0140-6736.

GBD 2016 SDG Collaborators (Including: Gill, Paramjit and Uthman, Olalekan A.). (2017) Measuring progress and projecting attainment on the basis of past trends of the health-related Sustainable Development Goals in 188 countries : an analysis from the Global Burden of Disease Study 2016. The Lancet, 390 (10100). pp. 1423-1459. doi:10.1016/S0140-6736(17)32336-X ISSN 0140-6736.

Hill, Edward M., House, Thomas A., Dhingra, Madhur S., Kalpravidh, Wantanee, Morzaria, Subhash, Osmani, Muzaffar G., Yamage, Mat, Xiao, Xiangming, Gilbert, Marius and Tildesley, Michael J. (2017) Modelling H5N1 in Bangladesh across spatial scales : model complexity and zoonotic transmission risk. Epidemics, 20 . pp. 37-55. doi:10.1016/j.epidem.2017.02.007 ISSN 1755-4365.

Winter, Ethan S., Schwarz, Anna, Fabig, Gunar, Feldman, Jessica L., Pires-da Silva, André Francisco, Müller-Reichert, Thomas, Sadler, Penny L. and Shakes, Diane C. (2017) Cytoskeletal variations in an asymmetric cell division support diversity in nematode sperm size and sex ratios. Development , 144 (18). pp. 3253-3263. doi:10.1242/dev.153841 ISSN 0950-1991.

Pastakia, Sonak D., Njuguna, Benson, Onyango, Beryl Ajwang', Washington, Sierra, Christoffersen-Deb, Astrid, Kosgei, Wycliffe K. and Saravanan, Ponnusamy (2017) Prevalence of gestational diabetes mellitus based on various screening strategies in western Kenya : a prospective comparison of point of care diagnostic methods. BMC Pregnancy and Childbirth, 17 (1). 226. ISSN 1471-2393.

(2017) Separate neural systems for behavioral change and for emotional responses to failure during behavioral inhibition. Human Brain Mapping, 38 (7). pp. 3527-3537. ISSN 1065-9471.

Dacheux, Estelle, Malys, Naglis, Meng, Xiang, Ramachandran, Vinoy, Mendes, Pedro and McCarthy, John E. G. (2017) Translation initiation events on structured eukaryotic mRNAs generate gene expression noise. Nucleic Acids Research, 45 (11). pp. 6981-6992. doi:10.1093/nar/gkx430 ISSN 0305-1048.

Blin, Kai, Wolf, Thomas, Chevrette, Marc G., Lu, Xiaowen, Schwalen, Christopher J., Kautsar, Satria A., Suarez Duran, Hernando G., Emmanuel de los Santos, L. C., Kim, Hyun Uk, Nave, Mariana, Dickschat, Jeroen S., Mitchell, Douglas A., Shelest, Ekaterina, Breitling, Rainer, Takano, Eriko, Lee, Sang Yup, Weber, Tilmann and Medema, Marnix H. (2017) antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification. Nucleic Acids Research . doi:10.1093/nar/gkx319 ISSN 0305-1048.

Webb, Colleen, Ferrari, Matthew, Lindstrom, Tom, Carpenter, Tim, Durr, Salome, Garner, Graeme, Jewell, Chris, Stevenson, Mark, Ward, Michael, Werkman, Marleen, Backer, Jantien and Tildesley, Michael J. (2017) Ensemble modelling and structured decision-making to support emergency disease management. Preventive Veterinary Medicine, 138 . pp. 124-133. ISSN 0167-5877.

Rossell, David and Telesca, Donatello (2017) Nonlocalpriors for high-dimensional estimation. Journal of the American Statistical Association, 112 (517). pp. 254-265. doi:10.1080/01621459.2015.1130634 ISSN 0162-1459.

Nichols, Thomas E., Das, Samir, Eickhoff, Simon B., Evans, Alan C., Glatard, Tristan, Hanke, Michael, Kriegeskorte, Nikolaus, Milham, Michael P., Poldrack, Russell A., Poline, Jean-Baptiste, Proal, Erika, Thirion, Bertrand, Van Essen, David C., White, Tonya and Yeo, B.T. Thomas (2017) Best practices in data analysis and sharing in neuroimaging using MRI. Nature Neuroscience, 20 (3). pp. 299-303. doi:10.1101/054262 ISSN 1097-6256.

Bowman, Andrew J., Koide, Akiko, Goodman, Jay S., Colling, Meaghan E., Zinne, Daria, Koide, Shohei and Ladurner, Andreas G. (2017) sNASP and ASF1A function through both competitive and compatible modes of histone binding. Nucleic Acids Research, 45 (2). pp. 643-656. doi:10.1093/nar/gkw892 ISSN 0305-1048.

Meng, Xiang, Firczuk, Helena, Pietroni, Paola, Westbrook, Richard, Dacheux, Estelle, Mendes, Pedro and McCarthy, John E. G. (2016) Minimum-noise production of translation factor eIF4G maps to a mechanistically determined optimal rate control window for protein synthesis. Nucleic Acids Research, 45 (2). pp. 1015-1025. doi:10.1093/nar/gkw1194 ISSN 0305-1048.

Maumet, Camille, Auer, Tibor, Bowring, Alexander, Chen, Gang, Das, Samir, Flandin, Guillaume, Ghosh, Satrajit, Glatard, Tristan, Gorgolewski, Krzysztof J., Helmer, Karl G., Jenkinson, Mark, Keator, David B., Nichols, B. Nolan, Poline, Jean-Baptiste, Reynolds, Richard, Sochat, Vanessa, Turner, Jessica and Nichols, Thomas E. (2016) Sharing brain mapping statistical results with the neuroimaging data model. Scientific Data, 3 . 160102. doi:10.1038/sdata.2016.102 ISSN 2052-4463.

Werkman, Marleen, Tildesley, Michael J., Brooks-Pollock, Ellen and Keeling, Matthew James (2016) Preserving privacy whilst maintaining robust epidemiological predictions. Epidemics, 17 . pp. 35-41. doi:10.1016/j.epidem.2016.10.004 ISSN 1755-4365.

Ray, Lauren, Valentic, Timothy R., Miyazawa, Takeshi, Withall, David M., Song, Lijiang, Milligan, Jacob C., Osada, Hiroyuki, Takahashi, Shunji, Tsai, Shiou-Chuan and Challis, Gregory L. (2016) A crotonyl-CoA reductase-carboxylase independent pathway for assembly of unusual alkylmalonyl-CoA polyketide synthase extender units. Nature Communications, 7 . 13609. doi:10.1038/ncomms13609 ISSN 2041-1723.

Gonzalez-Castillo, Javier, Chen, Gang, Nichols, Thomas E. and Bandettini, Peter A. (2016) Variance decomposition for single-subject task-based fMRI activity estimates across many sessions. NeuroImage . doi:10.1016/j.neuroimage.2016.10.024 ISSN 1053-8119.

(2016) Fine scale mapping of the 17q22 breast cancer locus using dense SNPs, genotyped within the Collaborative Oncological Gene-Environment Study (COGs). Scientific Reports, 6 . 32512 . doi:10.1038/srep32512 ISSN 2045-2322.

(2016) Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis. Nature Communications, 7 . 12460. doi:10.1038/ncomms12460 ISSN 2041-1723.

GBD 2015 HIV Collaborators (Including: Uthman, Olalekan A.). (2016) Estimates of global, regional, and national incidence, prevalence, and mortality of HIV, 1980–2015 : the Global Burden of Disease Study 2015. The Lancet HIV, 3 (8). e361-e387. doi:10.1016/S2352-3018(16)30087-X ISSN 2352-3018.

Salimraj, Ramya, Zhang, Lihong, Hinchliffe, Philip, Wellington, E. M. H., Brem, Jürgen, Schofield, Christopher J., Gaze, William H. and Spencer, James (2016) Structural and biochemical characterization of Rm3, a subclass B3 Metallo-β-Lactamase identified from a functional metagenomic study. Antimicrobial Agents and Chemotherapy, 60 (10). pp. 5828-5840. doi:10.1128/AAC.00750-16 ISSN 0066-4804.

Pauli, Ruth, Bowring, Alexander, Reynolds, Richard, Chen, Gang, Nichols, Thomas E. and Maumet, Camille (2016) Exploring fMRI Results Space : 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM. Frontiers in neuroinformatics, 10 . 24. doi:10.3389/fninf.2016.00024 ISSN 1662-5196.

Deller, Robert C., Pessin, Jeffrey E., Vatish, Manu, Mitchell, Daniel A. and Gibson, Matthew I. (2016) Enhanced non-vitreous cryopreservation of immortalized and primary cells by ice-growth inhibiting polymers. Biomaterials Science, 4 (7). pp. 1079-1084. doi:10.1039/c6bm00129g ISSN 2047-4830.

(2016) The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Scientific Data, 3 . 160044. doi:10.1038/sdata.2016.44 ISSN 2052-4463.

Huckstepp, Robert T. R., Henderson, Lauren E., Cardoza, Kathryn P. and Feldman, Jack L. (2016) Interactions between respiratory oscillators in adult rats. eLife, 5 . e14203. doi:10.7554/eLife.14203 ISSN 2050-084X.

Matinolli, Hanna-Maria, Männistö, Satu, Sipola-Leppänen, Marika, Tikanmäki, Marjaana, Heinonen, Kati, Lahti, Jari, Lahti, Marius, Wehkalampi, Karoliina, Järvelin, Marjo-Riitta, Andersson, Sture, Lano, Aulikki, Vartia, Timo, Wolke, Dieter, Eriksson, Johan G, Vääräsmäki, Marja, Räikkönen, Katri and Kajantie, Eero (2016) Body image and eating behavior in young adults born preterm. International Journal of Eating Disorders, 49 (6). pp. 572-580. doi:10.1002/eat.22553 ISSN 0276-3478.

Probert, William J. M. , Shea, Katriona, Fonnesbeck, Christopher J., Runge, Michael C., Carpenter, Tim E., Dürr, Salome, Garner, M. G. (Michael Graeme), Harvey, Neil, Stevenson, Mark A., Webb, Colleen T., Werkman, Marleen, Tildesley, Michael J. and Ferrari, Matthew J. (2016) Decision-making for foot-and-mouth disease control : objectives matter. Epidemics, 15 . pp. 10-19. doi:10.1016/j.epidem.2015.11.002 ISSN 1755-4365.

Oga, Emmanuel A., Brown, Jessica P., Brown, Clayton, Dareng, Eileen, Adekanmbi, Victor, Odutola, Michael, Olaniyan, Olayinka, Offiong, Richard, Obende, Kayode, Adewole, Ayodele Stephen, Peter, Achara, Dakum, Patrick and Adebamowo, Clement (2016) Recurrence of cervical intraepithelial lesions after thermo-coagulation in HIV-positive and HIV-negative Nigerian women. BMC Women's Health, 16 (1). doi:10.1186/s12905-016-0304-8 ISSN 1472-6874.

Nachega, Jean B., Skinner, Donald, Jennings, Larissa, Magidson, Jessica F., Altice, Frederick, Burke, Jessica G., Lester, Richard T., Uthman, Olalekan A., Knowlton, Amy, Cotton, Mark F., Anderson, Jean and Theron, Gerhard (2016) Acceptability and feasibility of mHealth and community-based directly observed antiretroviral therapy to prevent mother-to-child HIV transmission in South African pregnant women under Option B+ : an exploratory study. Patient Preference and Adherence, 2016 (10). pp. 683-690. doi:10.2147/PPA.S100002 ISSN 1177-889X.

Muir, Kenneth and Lophatananon, Artitaya (2016) Atlas of prostate cancer heritability in European and African-American men pinpoints tissue-specific regulation. Nature Communications, 7 . 10979. doi:10.1038/ncomms10979 ISSN 2041-1723.

Winkler, Anderson M., Webster, Matthew A., Brooks, Jonathan C., Tracey, Irene, Smith, Stephen M. and Nichols, Thomas E. (2016) Non-parametric combination and related permutation tests for neuroimaging. Human Brain Mapping, 37 (4). pp. 1486-1511. doi:10.1002/hbm.23115 ISSN 1065-9471.

Oyebode, Oyinlola, Kandala, Ngianga-Bakwin, Chilton, Peter J. and Lilford, Richard (2016) Use of traditional medicine in middle-income countries : a WHO-SAGE study. Health Policy and Planning . pp. 1-8. czw022. doi:10.1093/heapol/czw022 ISSN 0268-1080.

Social Science Genetic Association Consortium (SSGAC) (Including: Cappuccio, Francesco). (2016) Genome-wide association study identifies 74 loci associated with educational attainment. Nature, 533 . pp. 539-542. doi:10.1038/nature17671 ISSN 0028-0836.

Hoop, Cody L., Lin, Hsiang-Kai, Kar, Karunakar, Magyarfalvi, Gábor, Lamley, Jonathan M., Boatz, Jennifer C., Mandal, Abhishek , Lewandowski, Józef R., Wetzel, Ronald and van der Wel, Patrick C. A. (2016) Huntingtin exon 1 fibrils feature an interdigitated β-hairpin-based polyglutamine core. Proceedings of the National Academy of Sciences, 113 (6). pp. 1546-1551. doi:10.1073/pnas.1521933113 ISSN 0027-8424.

Vrljicak, P., Tao, S., Varshney, G. K., Quach, H. N. B., Joshi, A., LaFave, M. C., Burgess, S. M. and Sampath, Karuna (2016) Genome-wide analysis of transposon and retroviral insertions reveals preferential integrations in regions of DNA flexibility. G3 : Genes Genomes Genetics, 6 (4). pp. 805-817. doi:10.1534/g3.115.026849 ISSN 2160-1836.

Bridges, Rebecca G., Sohn, Sook-Young, Wright, Jordan L., Leppard, Keith and Hearing, Patrick (2016) The adenovirus E4-ORF3 protein stimulates SUMOylation of general transcription factor TFII-I to direct proteasomal degradation. mBio, 7 (1). e02184-15. doi:10.1128/mBio.02184-15 ISSN 2150-7511.

Silva Sousa, Eduardo Henrique, Ridnour, Lisa A., Gouveia, Florêncio S., Silva da Silva, Carlos Daniel, Wink, David A., de França Lopes, Luiz Gonzaga and Sadler, P. J. (2016) Thiol-Activated HNO release from a ruthenium antiangiogenesis complex and HIF-1α inhibition for cancer therapy. ACS Chemical Biology, 11 (7). pp. 2057-2065. doi:10.1021/acschembio.6b00222 ISSN 1554-8929.

Mao, Gaowei, Qu, Feng, St Croix, Claudette M., Tyurina, Yulia Y., Planas-Iglesias, Joan, Jiang, Jianfei, Huang, Zhentai, Amoscato, Andrew A., Tyurin, Vladimir A., Kapralov, Alexandr A., Cheikhi, Amin, Maguire, John, Klein-Seetharaman, Judith, Bayır, Hülya and Kagan, Valerian E. (2015) Mitochondrial redox opto-lipidomics reveals mono-oxygenated cardiolipins as pro-apoptotic death signals. ACS Chemical Biology, 11 (2). pp. 530-40. ISSN 1554-8929.

Chaudhuri, Jyotiska, Bose, Neelanjan, Tandonnet, Sophie, Adams, Sally, Zuco, Giusy, Kache, Vikas, Parihar, Manish, Reuss, Stephan H. von, Schroeder, Frank C. and Pires-da Silva, André Francisco (2015) Mating dynamics in a nematode with three sexes and its evolutionary implications. Scientific Reports, 5 . pp. 1-10. 17676. doi:10.1038/srep17676 ISSN 2045-2322.

Barneda, David, Planas-Iglesias, Joan, Gaspar, Maria L., Mohammadyani, Dariush, Prasannan, Sunil, Dormann, Dirk, Han, Gil-Soo, Jesch, Stephen A., Carman, George M., Kagan, Valerian, Parker, Malcolm G., Ktistakis, Nicholas T., Klein-Seetharaman, Judith, Dixon, Ann M., Henry, Susan A. and Christian, Mark (2015) The brown adipocyte protein CIDEA promotes lipid droplet fusion via a phosphatidic acid-binding amphipathic helix. eLife, 4 . doi:10.7554/eLife.07485 ISSN 2050-084X.

Prindle, Arthur, Liu, Jintao, Asally, Munehiro, Ly, San, Garcia-Ojalvo, Jordi and Süel, Gürol M. (2015) Ion channels enable electrical communication in bacterial communities. Nature, 527 . pp. 59-63. doi:10.1038/nature15709 ISSN 0028-0836.

(2015) Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans. Human molecular genetics, 24 (19). pp. 5589-5602. doi:10.1093/hmg/ddv203 ISSN 0964-6906.

Adams, Ann, Realpe, Alba, Vail, Laura, Buckingham, Christopher D., Erby, Lori H. and Roter, Debra (2015) How doctors’ communication style and race concordance influence African–Caribbean patients when disclosing depression. Patient Education and Counseling, 98 (10). pp. 1266-1273. doi:10.1016/j.pec.2015.08.019 ISSN 0738-3991.

(2015) Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium. Frontiers in Microbiology, 6 . pp. 1-7. 1036. doi:10.3389/fmicb.2015.01036 ISSN 1664-302X.

Planas-Iglesias, Joan, Dwarakanath, Himal, Mohammadyani, Dariush, Yanamala, Naveena, Kagan, Valerian E and Klein-Seetharaman, Judith (2015) Cardiolipin interactions with proteins. Biophysical Journal, 109 (6). pp. 1282-94. doi:10.1016/j.bpj.2015.07.034 ISSN 0006-3495.

Garcia De Gonzalo, C. V., Denham, Emma, Mars, Ruben A. T., Stülke, J., Donk, W. A. van der and Dijl, Jan Maarten van (2015) The phosphoenolpyruvate : sugar phosphotransferase system is involved in sensitivity to the glucosylated bacteriocin sublancin. Antimicrobial agents and chemotherapy, 59 (11). pp. 6844-6854. doi:10.1128/AAC.01519-15 ISSN 0066-4804.

The NIEHS-NCATS-UNC DREAM Toxicogenetics Collaboration (Including:

). (2015) Prediction of human population responses to toxic compounds by a collaborative competition. Nature Biotechnology, 33 (9). pp. 933-940. doi:10.1038/nbt.3299 ISSN 1087-0156.

Liu, Jintao, Prindle, Arthur, Humphries, Jacqueline, Gabalda-Sagarra, Marçal, Asally, Munehiro, Lee, Dong-yeon D., Ly, San, Garcia-Ojalvo, Jordi and Süel, Gürol M. (2015) Metabolic co-dependence gives rise to collective oscillations within biofilms. Nature, 523 (7562). pp. 550-554. doi:10.1038/nature14660 ISSN 0028-0836.

Timofeeva, Yulia and Volynsk, Kirill E. (2015) Calmodulin as a major calcium buffer shaping vesicular release and short-term synaptic plasticity : facilitation through buffer dislocation. Frontiers in Cellular Neuroscience, 9 . pp. 1-13. 239. doi:10.3389/fncel.2015.00239 ISSN 1662-5102.

Lusczek, Elizabeth R., Vincente, Tyrone, Lexcen, Daniel, Kulkarni, Vishwesh V., Mulier, Kristine and Beilman, Greg (2015) Metabolic networks in a porcine model of trauma and hemorrhagic shock demonstrate different control mechanism with carbohydrate pre-feed. BMC Emergency Medicine, 15 (13). pp. 1-7. doi:10.1186/s12873-015-0038-1 ISSN 1471-227X.

Lusczek, Elizabeth R., Vincent, Tyrone, Lexcen, Daniel, Kulkarni, Vishwesh V., Mulier, Kristine and Beilman, Greg (2015) Metabolic networks in a porcine model of trauma and hemorrhagic shock demonstrate different control mechanism with carbohydrate pre-feed. BMC emergency medicine, 15 (1). pp. 1-7. 38. doi:10.1186/s12873-015-0038-1 ISSN 1471-227X.

Bilson, Samuel, Yoshida, Hanako, Tran, Crystal D., Woods, Elizabeth A. and Hills, Thomas Trenholm (2015) Semantic facilitation in bilingual first language acquisition. Cognition, 140 . pp. 122-134. doi:10.1016/j.cognition.2015.03.013 ISSN 0010-0277.

Hollingsworth, T. Déirdre, Pilcher, Christopher P., Hecht, Frederick M., Deeks, Steven G. and Fraser, Christophe (2015) High transmissibility during early HIV infection among men who have sex with men — San Francisco, California. Journal of Infectious Diseases, 211 (11). pp. 1757-1760. doi:10.1093/infdis/jiu831 ISSN 0022-1899.

Fearnhead, Paul, Jenkins, Paul and Song, Yun S. (2015) Tractable diffusion and coalescent processes for weakly correlated loci. Electronic Journal of Probability, Volume 20 . pp. 1-26. Article number 58. doi:10.1214/EJP.v20-3564 ISSN 1083-6489.

Breast Cancer Association Consortium (Including: Muir, Kenneth (Kenneth R.), Lophatananon, Artitaya and Stewart-Brown, Sarah L.). (2015) Fine-mapping identifies two additional breast cancer susceptibility loci at 9q31.2. Human Molecular Genetics, Volume 24 (Number 10). pp. 2966-2984. Article number 2966. doi:10.1093/hmg/ddv035 ISSN 0964-6906.

Gorgolewski, Krzysztof J., Varoquaux, Gael, Rivera, Gabriel, Schwarz, Yannick, Ghosh, Satrajit S., Maumet, Camille, Sochat, Vanessa V., Nichols, Thomas E., Poldrack, Russell A., Poline, Jean-Baptiste, Yarkoni, Tal and Margulies, Daniel (2015) NeuroVault.org : a web-based repository for collecting and sharing unthresholded statistical maps of the human brain. Frontiers in neuroinformatics, 9 . pp. 1-9. 8. doi:10.3389/fninf.2015.00008 ISSN 1662-5196.

Bruce, A. G., Thouless, M. E. , Haines, A. S., Pallen, Mark J., Grundhoff, A. and Rose, T. N. (2015) Complete genome sequence of MneRV2, the pig-tailed macaque RV2 rhadinovirus, and evolutionary relationship with rhesus macaque RRV and human herpesvirus 8/KSHV. Journal of Virology, Volume 89 (Number 7). pp. 3888-3909. doi:10.1128/JVI.03597-14 ISSN 0022-538X.

(2015) A photorhabdus natural product inhibits insect juvenile hormone epoxide hydrolase. Chembiochem, Volume 16 (Number 5). pp. 766-771. doi:10.1002/cbic.201402650 ISSN 1439-4227.

Brooks-Pollock, Ellen, Jong, M. C. M. de, Keeling, Matthew James, Klinkenberg, Don and Wood, James L. N. (2015) Eight challenges in modelling infectious livestock diseases. Epidemics, Volume 10 . doi:10.1016/j.epidem.2014.08.005 ISSN 1755-4365.

Britton, Tom, House, Thomas A., Lloyd, Alun L., Mollison, Denis, Riley, Steven and Trapman, Pieter (2015) Five challenges for stochastic epidemic models involving global transmission. Epidemics, Volume 10 . pp. 54-57. doi:10.1016/j.epidem.2014.05.002 ISSN 1755-4365.

Roberts, Mick G., Andreasen, Viggo, Lloyd, Alun and Pellis, Lorenzo (2015) Nine challenges for deterministic epidemic models. Epidemics, 10 . pp. 49-53. doi:10.1016/j.epidem.2014.09.006 ISSN 1755-4365.

Lessler, Justin, Edmunds, W. John , Halloran, M. E., Hollingsworth, T. Déirdre and Lloyd, Alun L. (2015) Seven challenges for model-driven data collection in experimental and observational studies. Epidemics, Volume 10 . pp. 78-82. doi:10.1016/j.epidem.2014.12.002 ISSN 1755-4365.

Hollingsworth, T. Déirdre, Pulliam, Juliet Rachel Crowder, Funk, S., Truscott, James E., Isham, Valerie and Lloyd, Alun L. (2015) Seven challenges for modelling indirect transmission : vector-borne diseases, macroparasites and neglected tropical diseases. Epidemics, Volume 10 . pp. 16-20. doi:10.1016/j.epidem.2014.08.007 ISSN 1755-4365.

Gog, Julia R., Pellis, Lorenzo, Wood, James L. N., McLean, Angela R., Arinaminpathy, Nimalan and Lloyd-Smith, James O. (2015) Seven challenges in modelling pathogen dynamics within-host and across scales. Epidemics, Volume 10 . pp. 45-48. doi:10.1016/j.epidem.2014.09.009 ISSN 1755-4365.

Metcalf, C. J. E., Andreason, V., Bjornstad, O. N., Eames, Ken T. D., Edmunds, W. John, Funk, S., Hollingsworth, T. Déirdre, Lessler, L., Viboud, C. and Grenfell, Bryan T. (2015) Seven challenges in modelling vaccine preventable diseases. Epidemics, Volume 10 . pp. 11-15. doi:10.1016/j.epidem.2014.08.004 ISSN 1755-4365.

Klepac, Petra, Funk, S., Hollingsworth, T. Déirdre, Metcalf, C. J. E. and Hampson, Katie Ruth (2015) Six challenges in the eradication of infectious diseases. Epidemics, Volume 10 . pp. 97-101. doi:10.1016/j.epidem.2014.12.001 ISSN 1755-4365.

O’Malley, Maureen A., Soyer, Orkun S. and Siegal, Mark L. (2015) A philosophical perspective on evolutionary systems biology. Biological Theory, Volume 10 (Number 1). pp. 6-17. doi:10.1007/s13752-015-0202-6 ISSN 1555-5542.

Ge, Tian, Nichols, Thomas E., Lee, Phil H., Holmes, Avram J., Roffman, Joshua L., Buckner, Randy L., Sabuncu , Mert R. and Smoller, Jordan W. (2015) Massively expedited genome-wide heritability analysis (MEGHA). Proceedings of the National Academy of Sciences of the United States of America, Volume 112 (Number 8). pp. 2479-2484. doi:10.1073/pnas.1415603112 ISSN 0027-8424 .

St Pourcain, Beate, Haworth, Claire M. A., Davis, Oliver S. P., Wang, Kai, Timpson, Nicholas J., Evans, David M., Kemp, John P., Ronald, Angelica, Price, Tom S., Meaburn, Emma, Ring, Susan M., Golding, Jean, Hakonarson, Hakon, Plomin, Robert and Smith, George Davey (2014) Heritability and genome-wide analyses of problematic peer relationships during childhood and adolescence. Human Genetics . doi:10.1007/s00439-014-1514-5 ISSN 1432-1203.

Gómez-Olivé, F. Xavier, Thorogood, Margaret, Bocquier, Phillippe, Mee, Paul, Kahn, Kathleen, Berkman, Lisa F. and Tollman, Stephen (2014) Social conditions and disability related to the mortality of older people in rural South Africa. International Journal of Epidemiology, Volume 43 (Number 5). pp. 1531-1541. doi:10.1093/ije/dyu093 ISSN 0300-5771.

Salvestrini, Camilla, Lucas, Mark, Lionetti, Paolo, Torrente, Franco, James, Sean G., Phillips, Alan D. and Murch, Simon (2014) Matrix expansion and syncytial aggregation of syndecan-1+ cells underpin villous atrophy in coeliac disease. PLoS One, Volume 9 (Number 9). Article number e106005. doi:10.1371/journal.pone.0106005 ISSN 1932-6203.

Brandizzi, Federica, Frigerio, Lorenzo, Howell, Stephen H. and Schäfer, Patrick (2014) Endoplasmic reticulum : shape and function in stress translation. Frontiers in Plant Science, Volume 5 . pp. 1-2. doi:10.3389/fpls.2014.00425 ISSN 1664-462X.

The Global Burden of Metabolic Risk Factors for Chronic Diseases Collaboration (Including: Cappuccio, Francesco). (2014) Cardiovascular disease, chronic kidney disease, and diabetes mortality burden of cardiometabolic risk factors from 1980 to 2010 : a comparative risk assessment. The Lancet - Diabetes and Endocrinology, Volume 2 (Number 8). pp. 634-647. doi:10.1016/S2213-8587 ISSN 0140-6736.

Oates, Chris J., Dondelinger, Frank, Bayani, Nora, Korkola, James, Gray, Joe W. and Mukherjee, Sach (2014) Causal network inference using biochemical kinetics. Bioinformatics, Volume 30 (Number 17). i468-i474. doi:10.1093/bioinformatics/btu452 ISSN 1367-4803.

(2014) The inwardly rectifying K+ channel KIR7.1 controls uterine excitability throughout pregnancy. EMBO Molecular Medicine, Volume 6 (Number 9). pp. 1161-1174. doi:10.15252/emmm.201403944 ISSN 1757-4676.

Guillaume, Bryan, Hua, Xue, Thompson, Paul M., Waldorp, Lourens and Nichols, Thomas E. (2014) Fast and accurate modelling of longitudinal and repeated measures neuroimaging data. NeuroImage, Volume 94 . pp. 287-302. doi:10.1016/j.neuroimage.2014.03.029 ISSN 1053-8119.

Bloom, David E., Canning, David and Moore, Michael J. (2014) Optimal retirement with increasing longevity. The Scandinavian Journal of Economics, 116 (3). pp. 838-858. doi:10.1111/sjoe.12060 ISSN 0347-0520.

Uddin, Md Jasim, Alam, Nurul, Sarma, Haribondhu, Chowdhury, Muhammad Ashique Haider, Alam, Dewan S., Niessen, L.W. and Koehlmoos, Tracey L. P (2014) Consequences of hypertension and chronic obstructive pulmonary disease, healthcare-seeking behaviors of patients, and responses of the health system: a population-based cross-sectional study in Bangladesh. BMC Public Health, Volume 14 (Number 1). p. 547. doi:10.1186/1471-2458-14-547 ISSN 1471-2458.

Madan, Christopher R., Ludvig, Elliot Andrew and Spetch, Marcia Louise (2014) Remembering the best and worst of times : memories for extreme outcomes bias risky decisions. Psychonomic Bulletin & Review . doi:10.3758/s13423-013-0542-9 ISSN 1069-9384.

Tosto, Maria Grazia, Hanscombe, Ken B., Haworth, Claire M. A., Davis, Oliver S. P., Petrill, Stephen A., Dale, Philip S., Malykh, Sergey, Plomin, Robert and Kovas, Yulia (2014) Why do spatial abilities predict mathematical performance? Developmental Science, Volume 17 (Number 3). doi:10.1111/desc.12138 ISSN 1363-755X.

Messiha, Hanan L., Kent, Edward, Malys, Naglis, Carroll, Kathleen M., Swainston, Neil, Mendes, Pedro and Smalbone, Kieran (2014) Enzyme characterisation and kinetic modelling of the pentose 2 phosphate pathway in yeast. PeerJ PrePrints, 4 (146). e146v4. ISSN 2167-9843.

Ludvig, Elliot Andrew, Madan, Christopher R. and Spetch, Marcia Louise (2014) Extreme outcomes sway risky decisions from experience. Journal of Behavioral Decision Making, Volume 27 (Number 2). pp. 146-156. doi:10.1002/bdm.1792 ISSN 0894-3257.

Buhnerkempe, Michael G., Tildesley, Michael J., Lindström, Tom, Grear, Daniel A., Portacci, Katie, Miller, Ryan S., Lombard, Jason E., Werkman, Marleen, Keeling, Matthew James, Wennergren, Uno and Webb, Colleen T. (2014) The impact of movements and animal density on continental scale cattle disease outbreaks in the United States. PLoS One, Volume 9 (Number 3). Article number e91724. doi:10.1371/journal.pone.0091724 ISSN 1932-6203.

Yamada, Eijiro and Bastie, Claire C. (2014) Disruption of fyn SH3 domain interaction with a proline-rich motif in liver kinase B1 results in activation of AMP-activated protein kinase. PLoS ONE , Volume 9 (Number 2). Article number e89604. doi:10.1371/journal.pone.0089604 ISSN 1932-6203.

Wellcome Trust Case Control Consortium 2 (Including: Harlaar, Nicole, Meaburn, Emma L., Hayiou-Thomas, Marianna E., Davis, Oliver S. P., Docherty, Sophia, Hanscombe, Ken B., Haworth, Claire M. A., Price, Tom S., Trzaskowski, Maciej, Dale, Philip S. and Plomin, Robert). (2014) Genome-wide association study of receptive language ability of 12-year-olds. Journal of Speech, Language, and Hearing Research, Volume 57 (Number 1). pp. 96-105. doi:10.1044/1092-4388(2013/12-0303) ISSN 1092-4388.

Nachega, Jean B., Parienti, Jean-Jacques, Uthman, Olalekan A., Gross, Robert, Dowdy, David W., Sax, Paul E., Gallant, Joel E., Mugavero, Michael J., Mills, Edward and Giordano, Thomas P. (2014) Lower pill burden and once-daily antiretroviral treatment regimens for HIV infection : a meta-analysis of randomized controlled trials. Clinical Infectious Diseases, Volume 58 (Number 9). pp. 1297-1307. doi:10.1093/cid/ciu046 ISSN 1058-4838.

Gershman, Samuel J., Moustafa, Ahmed A. and Ludvig, Elliot Andrew (2014) Time representation in reinforcement learning models of the basal ganglia. Frontiers in Computational Neuroscience, Volume 7 . Article number 194. doi:10.3389/fncom.2013.00194 ISSN 1662-5188.

Shakeshaft, Nicholas G., Trzaskowski, Maciej, McMillan, Andrew, Rimfeld, Kaili, Krapohl, Eva, Haworth, Claire M. A., Dale, Philip S. and Plomin, Robert (2013) Strong genetic influence on a UK nationwide test of educational achievement at the end of compulsory education at age 16. PLoS One, Volume 8 (Number 12). Article number e80341. doi:10.1371/journal.pone.0080341 ISSN 1932-6203.

Tang, Shangming, Copsey, Alice, Jordan, Philip W., Blitzblau, Hannah G., Newcombe, Sonya, Chan, Andrew Chi-ho, Newnham, Louise, Li, Zhaobo, Gray, Stephen, Herbert, Alex D., Arumugam, Prakash , Hochwagen, Andreas, Hunter, Neil and Hoffmann, Eva (2013) Smc5/6 coordinates formation and resolution of joint molecules with chromosome morphology to ensure meiotic divisions. PLoS Genetics, Volume 9 (Number 12). Article number e1004071. doi:10.1371/journal.pgen.1004071 ISSN 1553-7390.

Tarabra, Elena, Yang, Yingjuan, Yang, Gong-She, Vaitheesvaran, Bhavapriya, Palacios, Gustavo, Kurland, Irwin J., Pessin, Jeffrey E. and Bastie, Claire C. (2013) Alteration of de novo glucose production contributes to fasting hypoglycaemia in fyn deficient mice. PLoS One, Volume 8 (Number 11). Article number e81866. doi:10.1371/journal.pone.0081866 ISSN 1932-6203.

Breast Cancer Association Consortium (Including: Muir, Kenneth (Kenneth R.), Lophatananon, Artitaya and Stewart-Brown, Sarah L.). (2013) FGF receptor genes and breast cancer susceptibility : results from the Breast Cancer Association Consortium. British Journal of Cancer, Volume 110 (Number 4). pp. 1088-1100. doi:10.1038/bjc.2013.769 ISSN 0007-0920.

(2013) Multi-site genetic analysis of diffusion images and voxelwise heritability analysis : a pilot project of the ENIGMA–DTI working group. NeuroImage, Volume 81 . pp. 455-469. doi:10.1016/j.neuroimage.2013.04.061 ISSN 1053-8119.

Makura, Caroline BT, Nirantharakumar, Krishnarajah, Girling, Alan J, Saravanan, Ponnusamy and Narendran, Parth (2013) Effects of physical activity on the development and progression of microvascular complications in type 1 diabetes : retrospective analysis of the DCCT study. BMC Endocrine Disorders, Volume 13 (Number 1). Article number 37. doi:10.1186/1472-6823-13-37 ISSN 1472-6823.

Martinez-Lopez, Nuria, Athonvarangkul, Diana, Sahu, Srabani, Coletto, Luisa, Zong, Haihong, Bastie, Claire C., Pessin, Jeffrey E., Schwartz, Gary J. and Singh, Rajat (2013) Autophagy in Myf5+ progenitors regulates energy and glucose homeostasis through control of brown fat and skeletal muscle development. EMBO reports, 14 (9). pp. 795-803. doi:10.1038/embor.2013.111 ISSN 1469-221X.

Young, Anna, Stoilova-McPhie, Svetla, Rothnie, Alice, Vallis, Yvonne, Harvey-Smith, Phillip, Ranson, Neil, Kent, Helen, Brodsky, Frances M., Pearse, Barbara M. F., Roseman, Alan and Smith, Corinne J. (2013) Hsc70-induced changes in clathrin-auxilin cage structure suggest a role for clathrin light chains in cage disassembly. Traffic, Volume 14 (Number 9). pp. 987-996. doi:10.1111/tra.12085 ISSN 1398-9219.

Gifford, Miriam L., Banta, Joshua A., Katari, Manpreet S., Hulsmans, Jo, Chen, Lisa, Ristova, Daniela, Tranchina, Daniel, Purugganan, Michael D., Coruzzi, Gloria, Birnbaum, Kenneth D., Rosas, Ulises and Cibrian-Jaramillo, Angelica (2013) Plasticity regulators modulate specific root traits in discrete nitrogen environments. PLoS Genetics, Volume 9 (Number 9). Article number e1003760. doi:10.1371/journal.pgen.1003760 ISSN 1553-7390.

Jadhav, Vaibhav, Hackl, Matthias, Druz, Aliaksandr, Shridhar, Smriti, Chung, Cheng-Yu, Heffner, Kelley M., Kreil, David, Betenbaugh, Mike, Shiloach, Joseph, Barron, Niall, Grillari, Johannes and Borth, Nicole (2013) CHO microRNA engineering is growing up : recent successes and future challenges. Biotechnology Advances, Volume 31 (Number 8). pp. 1501-1513. doi:10.1016/j.biotechadv.2013.07.007 ISSN 0734-9750.

Wellcome Trust Case Control Consortium 2 (Including: Viding, Essi, Price, Tom S., Jaffee, Sara R., Trzaskowski, Maciej, Davis, Oliver S. P., Meaburn, Emma L., Haworth, Claire M. A. and Plomin, Robert). (2013) Genetics of callous-unemotional behavior in children. PLoS One, Volume 8 (Number 7). Article number e65789. doi:10.1371/annotation/0b16418f-ceb5-41b2-be2a-a20f0c56f9a6 ISSN 1932-6203.

Mulla, Melissa J., Salmon, Jane E., Chamley, Larry W., Brosens, Jan J., Boeras, Crina M., Kavathas, Paula B. and Abrahams, Vikki M. (2013) A role for uric acid and the nalp3 inflammasome in antiphospholipid antibody-induced IL-1β production by human first trimester trophoblast. PLoS One, Volume 8 (Number 6). Article number e65237. doi:10.1371/journal.pone.0065237 ISSN 1932-6203.

(2013) Fine-mapping identifies multiple prostate cancer risk loci at 5p15, one of which associates with TERT expression. Human Molecular Genetics, Volume 22 (Number 12). pp. 2520-2528. doi:10.1093/hmg/ddt086 ISSN 0964-6906.

Luzardo, Andre, Ludvig, Elliot Andrew and Rivest, François (2013) An adaptive drift-diffusion model of interval timing dynamics. Behavioural Processes, Volume 95 . pp. 90-99. doi:10.1016/j.beproc.2013.02.003 ISSN 0376-6357.

Trzaskowski, Maciej, Eley, Thalia C., Davis, Oliver S. P., Doherty, Sophia J., Hanscombe, Ken B., Meaburn, Emma L., Haworth, Claire M. A., Price, Tom S. and Plomin, Robert (2013) First genome-wide association study on anxiety-related behaviours in childhood. PLoS One, Volume 8 (Number 4). Article number e58676. doi:10.1371/annotation/d320e3eb-ab8f-43ce-b341-3da36cd7ff99 ISSN 1932-6203.

Wellcome Trust Case Control Consortium 2 (Including: Plomin, Robert, Haworth, Claire M. A., Meaburn, Emma L., Price, Tom S. and Davis, Oliver S. P.). (2013) Common DNA markers can account for more than half of the genetic influence on cognitive abilities. Psychological Science, Volume 24 (Number 4). pp. 562-568. doi:10.1177/0956797612457952 ISSN 1467-9280.

Gong, Jian, Campos, Hannia, Fiecas, Mark, McGarvey, Stephen T., Goldberg, Robert J., Richardson, Caroline R. and Baylin, Ana (2013) A case-control study of physical activity patterns and risk of non-fatal myocardial infarction. BMC Public Health, Volume 13 (Number 1). 122. doi:10.1186/1471-2458-13-122 ISSN 1471-2458.

Haworth, Claire M. A., Davis, Oliver S. P., Hanscombe, Ken B., Kovas, Yulia, Dale, Philip S. and Plomin, Robert (2013) Understanding the science-learning environment : a genetically sensitive approach. Learning and Individual Differences, Volume 23 (Number 100). pp. 145-150. doi:10.1016/j.lindif.2012.07.018 ISSN 1041-6080.

Rossell, David and Müller, Peter (2013) Sequential stopping for high-throughput experiments. Biostatistics, Volume 14 (Number 1). pp. 75-86. doi:10.1093/biostatistics/kxs026 ISSN 1465-4644.

(2013) Esperanto for histones : CENP-A, not CenH3, is the centromeric histone H3 variant. Chromosome Research, Volume 21 (Number 2). pp. 101-106. doi:10.1007/s10577-013-9347-y ISSN 0967-3849.

Harrison, Andrew B., Binder, Hans, Buhot, Arnaud , Burden, Conrad John, Carlon, Enrico, Gibas, Cynthia, Gamble, Lara J., Halperin, Avraham, Hooyberghs, Jef, Kreil, David, Levicky, Rastislav, Noble, Peter A., Ott, Albrecht, Pettitt, B. Montgomery, Tautz, Diethard and Pozhitkov, Alexander E. (2013) Physico-chemical foundations underpinning microarray and next-generation sequencing experiments. Nucleic Acids Research, Volume 41 (Number 5). pp. 2779-2796. doi:10.1093/nar/gks1358 ISSN 0305-1048.

Lopez-Clavijo, Andrea F., Duque-Daza, Carlos A. and O'Connor, Peter B. (2013) Tandem mass spectrometry for the study of glyoxal-derived advanced glycation end-products (AGEs) in peptides. Rapid Communications in Mass Spectrometry, Volume 28 (Number 1). pp. 25-32. doi:10.1002/rcm.6753 ISSN 0951-4198.

(2013) A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes. FEBS Letters, Volume 587 (Number 17). pp. 2832-2841. doi:10.1016/j.febslet.2013.06.043 ISSN 0014-5793.

Chan, Andrew H., Jenkins, Paul and Song, Yun S. (2012) Genome-wide fine-scale recombination rate variation in Drosophila melanogaster. PLoS Genetics, Vol.8 (No.12). e1003090. doi:10.1371/journal.pgen.1003090 ISSN 1553-7390.

Yan, Lei, Gao, Yan, Zhang, Yong, Tildesley, Michael J., Liu, L, Zhang, Y, Wen, Leying, Wang, Wei, Li, Xiaodan, Hu, Ying, Bai, Tian, Wang, Min, Zeng, Yuhong, Wang, Dingming, Wang, Xianjun, Lan, Yu, Wang, Shiwen and Shu, Yuelong (2012) Epidemiological and virological characteristics of pandemic influenza A (H1N1) 2009 in school outbreaks in China. PLoS One, Vol.7 (No.9). e45898. doi:10.1371/journal.pone.0045898 ISSN 1932-6203.

Li, Huilin, Wells, Stephen A., Jimenez-Roldan, J. Emilio, Römer, Rudolf A., Zhao, Yao, (Researcher in chemistry), Sadler, P. J. and O'Connor, Peter B. (2012) Protein flexibility is key to cisplatin crosslinking in calmodulin. Protein Science, Volume 21 (Number 9). pp. 1269-1279. doi:10.1002/pro.2111 ISSN 0961-8368.

Jaffee, Sara R., Hanscombe, Ken B., Haworth, Claire M. A., Davis, Oliver S. P. and Plomin, Robert (2012) Chaotic homes and children's disruptive behavior : a longitudinal cross-lagged twin study. Psychological Science, Volume 23 (Number 6). pp. 643-650. doi:10.1177/0956797611431693 ISSN 1467-9280.

Hill, Steven M. (Mark), Neve, Richard M., Bayani, Nora, Kuo, Wen-Lin, Ziyad, Safiyyah, Spellman, Paul T., Gray, Joe W. and Mukherjee, Sach (2012) Integrating biological knowledge into variable selection : an empirical Bayes approach with an application in cancer biology. BMC Bioinformatics, Volume 13 (Number 1). Article no. 94. doi:10.1186/1471-2105-13-94 ISSN 1471-2105.

Yamada, Eijiro, Bastie, Claire C., Koga, Hiroshi, Wang, Yichen, Cuervo, Ana Maria and Pessin, Jeffrey E. (2012) Mouse skeletal muscle fiber-type-specific macroautophagy and muscle wasting are regulated by a Fyn/STAT3/Vps34 signaling pathway. Cell Reports, Vol.1 (No.5). pp. 557-569. doi:10.1016/j.celrep.2012.03.014 ISSN 22111247.

Hanscombe, Ken B., Trzaskowski, Maciej, Haworth, Claire M. A., Davis, Oliver S. P., Dale, Philip S. and Plomin, Robert (2012) Socioeconomic status (SES) and children's intelligence (IQ) : in a UK-representative sample SES moderates the environmental, not genetic, effect on IQ. PLoS One, Volume 7 (Number 2). Article number e30320. doi:10.1371/journal.pone.0030320 ISSN 1932-6203.

Vatish, Manu, Tesfa, Lydia, Grammatopoulos, Dimitris, Yamada, Eijiro, Bastie, Claire C. and Pessin, Jeffrey E. (2012) Inhibition of Akt activity and calcium channel function coordinately drive cell-cell fusion in the BeWO choriocarcinoma placental cell line. PLoS ONE, Vol.7 (No.1). e29353. doi:10.1371/journal.pone.0029353 ISSN 1932-6203.

Breast Cancer Association Consortium (Including: Muir, Kenneth (Kenneth R.) and Lophatananon, Artitaya). (2012) Comparison of 6q25 breast cancer hits from Asian and European genome wide association studies in the Breast Cancer Association Consortium (BCAC). PLoS ONE, Vol.7 (No.8). e42380. doi:10.1371/journal.pone.0042380 ISSN 1932-6203.

Holmes, Ian, Harris, Keith and Quince, Christopher (2012) Dirichlet multinomial mixtures : generative models for microbial metagenomics. PLoS One, Volume 7 (Number 2). Article number e30126. doi:10.1371/journal.pone.0030126 ISSN 1932-6203.

Tildesley, Michael J. and Ryan, Sadie J. (2012) Disease prevention versus data privacy : using landcover maps to inform spatial epidemic models. PLoS Computational Biology, Vol.8 (No.11). e1002723. doi:10.1371/journal.pcbi.1002723 ISSN 1553-7358.

Williams, Tiffany M., Loman, Nicholas J., Ebruke, Chinelo, Musher, Daniel M., Adegbola, Richard A., Pallen, Mark J., Weinstock, George M. and Antonio, Martin (2012) Genome analysis of a highly virulent serotype 1 strain of streptococcus pneumoniae from West Africa. PLoS One, Volume 7 (Number 10). Article number e26742. doi:10.1371/journal.pone.0026742 ISSN 1932-6203.

Spooner, Robert A. and Lord, Mike (2012) How ricin and shiga toxin reach the cytosol of target cells : retrotranslocation from the endoplasmic reticulum. Current Topics in Microbiology and Immunology, Vol.357 . pp. 19-40. doi:1007/82_2011_154 ISSN 0070-217X.

Perkins, Bruce A., Rabbani, Naila, Weston, Andrew J., Ficociello, Linda H., Antonysunil, Adaikalakoteswari, Niewczas, Monika, Warram, James, Krolewski, Andrzej S. and Thornalley, Paul J. (2012) Serum levels of advanced glycation endproducts and other markers of protein damage in early diabetic nephropathy in type 1 diabetes. PLoS One, Vol.7 (No.4). e35655. doi:10.1371/journal.pone.0035655 ISSN 1932-6203.

Davis, Oliver S. P., Haworth, Claire M. A., Lewis, Cathryn M. and Plomin, Robert (2012) Visual analysis of geocoded twin data puts nature and nurture on the map. Molecular Psychiatry, Volume 17 (Number 9). pp. 867-874. doi:10.1038/mp.2012.68 ISSN 1359-4184.

Baltrus, David A., Nishimura, Marc T., Dougherty, Kevin M., Biswas, Surojit, Mukhtar, M. Shahid, Vicente, Joana G., Holub, E. B. and Dangl, J. L. (Jeffery L.) (2012) The molecular basis of host specialization in bean pathovars of Pseudomonas syringae. Molecular Plant-Microbe Interactions, Vol.25 (No.7). pp. 877-888. doi:10.1094/MPMI-08-11-0218 ISSN 0894-0282.

(2012) The transcription factor encyclopedia. Genome Biology, 13 (3). R24 . doi:10.1186/gb-2012-13-3-r24 ISSN 1474-7596.

Kaverina, Irina and Straube, Anne (2011) Regulation of cell migration by dynamic microtubules. Seminars in Cell & Developmental Biology, Volume 22 (Number 9). pp. 968-974. doi:10.1016/j.semcdb.2011.09.017 ISSN 1084-9521.

Parsons, P. (Philippa), Gilbert, S. J., Vaughan-Thomas, A., Sorrell, D. A., Notman, Rebecca, Bishop, M. (Mark), Hayes, A. J. (Anthony J.), Mason, D. J. (Deborah J.) and Duance, V. C. (2011) Type IX collagen interacts with fibronectin providing an important molecular bridge in articular cartilage. Journal of Biological Chemistry, Vol.286 (No.40). pp. 34986-34997. doi:10.1074/jbc.M111.238188 ISSN 0021-9258.

Lewandowski, Józef R., van der Wel, Patrick C. A., Rigney, Mike, Grigorieff, Nikolaus and Griffin, Robert G. (2011) Structural complexity of a composite amyloid fibril. Journal of the American Chemical Society, Vol.133 (No.37). pp. 14686-14698. doi:10.1021/ja203736z ISSN 0002-7863.

Australian Ovarian Cancer Study Group, Peter MacCallum Hospital (Melbourne, Vic.). Cancer Institute, Ovarian Cancer Association (Including:

). (2011) Functional polymorphisms in the TERT promoter are associated with risk of serous epithelial ovarian and breast cancers. PLoS ONE, Vol.6 (No.9). doi:10.1371/journal.pone.0024987 ISSN 1932-6203.

Dyson, Alex, Bryan, Nathan S., Fernandez, Bernadette O., Garcia-Saura, Maria Francisca, Saijo, Fumito, Mongardon, Nicolas, Rodriguez, Juan, Singer, Mervyn and Feelisch, Martin (2011) An integrated approach to assessing nitroso-redox balance in systemic inflammation. Free Radical Biology and Medicine, Vol.51 (No.6). pp. 1137-1145. doi:10.1016/j.freeradbiomed.2011.06.012 ISSN 0891-5849.

Sargaeva, Nadezda P., Lin, Cheng and O’Connor, Peter B. (2011) Differentiating N-terminal aspartic and isoaspartic acid residues in peptides. Analytical Chemistry, Vol.83 (No.17). pp. 6675-6682. doi:10.1021/ac201223d ISSN 0003-2700.

Papireddy, Kancharla, Smilkstein, Martin, Kelly, Jane Xu, Salem, Shaimaa M., Alhamadsheh, Mamoun, Haynes, Stuart W., Challis, Gregory L. and Reynolds, Kevin A. (2011) Antimalarial activity of natural and synthetic prodiginines. Journal of Medicinal Chemistry, Volume 54 (Number 15). pp. 5296-5306. doi:10.1021/jm200543y ISSN 0022-2623.

Burroughs, Nigel John, Köhler, Karsten, Miloserdov, Vladimir, Dustin, Michael L., Van der Merwe, P. Anton and Davis, Daniel M. (2011) Boltzmann energy-based image analysis demonstrates that extracellular domain size differences explain protein segregation at immune synapses. PLoS Computational Biology, Vol.7 (No.8). e1002076. doi:10.1371/journal.pcbi.1002076 ISSN 1553-7358.

Sargaeva, Nadezda P., Goloborodko, Anton A., O'Connor, Peter B., Moskovets, Eugene and Gorshkov, Mikhail V. (2011) Sequence-specific predictive chromatography to assist mass spectrometric analysis of asparagine deamidation and aspartate isomerization in peptides. Electrophoresis, Vol.32 (No.15). pp. 1962-1969. doi:10.1002/elps.201000507 ISSN 0173-0835.

Arabidopsis Interactome Mapping Consortium (Including:

). (2011) Evidence for network evolution in an Arabidopsis interactome map. Science, Vol.333 (No.6042). pp. 601-607. doi:10.1126/science.1203877 ISSN 0036-8075.

European Union Effectoromics Consortium (Including:

). (2011) Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science, Vol.333 (No.6042). pp. 596-601. doi:10.1126/science.1203659 ISSN 0036-8075.

Aletrari, Mina-Olga , McKibbin, Craig, Williams, Helen, Pawar, Vidya, Pietroni, Paola, Lord, Mike, Flitsch, Sabine L., Whitehead, Roger C., Swanton, Eileithyia, High, Stephen and Spooner, Robert A. (2011) Eeyarestatin 1 interferes with both retrograde and anterograde intracellular trafficking pathways. PLoS One, Vol.6 (No.7). e22713. doi:10.1371/journal.pone.0022713 ISSN 1932-6203.

(2011) Chromosome 7p11.2 (EGFR) variation influences glioma risk. Human Molecular Genetics, Vol.20 (No.14). pp. 2897-2904. doi:10.1093/hmg/ddr192 ISSN 0964-6906.

Cain, Peter, Holdermann, Iris, Sinning, Irmgard, Johnson, Arthur E. and Robinson, Colin (2011) Binding of chloroplast signal recognition particle to a thylakoid membrane protein substrate in aqueous solution and delineation of the cpSRP43–substrate interaction domain. Biochemical Journal, Vol.437 (No.1). pp. 149-155. doi:10.1042/BJ20110270 ISSN 0264-6021.

Donahue, Richard P., Dorn, Joan M., Stranges, Saverio, Swanson, M., Hovey, K. and Trevisan, Maurizio (2011) Impaired fasting glucose and recurrent cardiovascular disease among survivors of a first acute myocardial infarction : evidence of a sex difference? The Western New York experience. Nutrition, Metabolism and Cardiovascular Diseases, Vol.21 (No.7). pp. 504-511. doi:10.1016/j.numecd.2009.11.012 ISSN 09394753.

Whicher, J. R., Florova, G., Sydor, Paulina K., Singh, R., Alhamadsheh, M., Challis, Gregory L., Reynolds, Kevin A. and Smith, Janet Louise (2011) Structure and function of the RedJ protein, a thioesterase from the prodiginine biosynthetic pathway in streptomyces coelicolor. Journal of Biological Chemistry, Vol.286 (No.25). pp. 22558-22569. doi:10.1074/jbc.M110.213512 ISSN 0021-9258.

Wise, Helen M., Barbezange, Cyril, Jagger, Brett W., Dalton, Rosa Maria, Gog, Julia R., Curran, Martin D., Taubenberger, Jeffery, Anderson, Emma C. and Digard, Paul (2011) Overlapping signals for translational regulation and packaging of influenza A virus segment 2. Nucleic Acids Research, Vol.39 (No.17). pp. 7775-7790. doi:10.1371/journal.pone.0023630 ISSN 1362-4962.

Kunar, Melina A. and Wolfe, Jeremy M. (2011) Target absent trials in configural contextual cuing. Attention, Perception, & Psychophysics, Vol.73 (No.7). pp. 2077-2091. doi:10.3758/s13414-011-0164-0 ISSN 1943-3921.

Redmann, V., Oresic, K., Tortorella, L. L., Cook, Jonathan P., Lord, Mike and Tortorella, D. (2011) Dislocation of ricin toxin A chains in human cells utilizes selective cellular factors. Journal of Biological Chemistry, Vol.286 (No.24). pp. 21231-21238. doi:10.1074/jbc.M111.234708 ISSN 0021-9258.

(2011) Comparative functional genomics of the fission yeasts. Science, Volume 332 (Number 6032). pp. 930-936. doi:10.1126/science.1203357 ISSN 0036-8075.

Li, Huilin, Zhao, Yao, Phillips, Hazel I. A., Qi, Yulin, Lin, Tzu-Yung, Sadler, P. J. and O'Connor, Peter B. (2011) Mass spectrometry evidence for cisplatin as a protein cross-linking reagent. Analytical Chemistry, Vol.83 (No.13). pp. 5369-5376. doi:10.1021/ac200861k ISSN 0003-2700.

Sydor, Paulina K., Barry, Sarah M., Odulate, Olanipekun M., Barona-Gomez, Francisco, Haynes, Stuart W., Corre, Christophe, Song, Lijiang and Challis, Gregory L. (2011) Regio- and stereodivergent antibiotic oxidative carbocyclizations catalysed by Rieske oxygenase-like enzymes. Nature Chemistry, Vol.3 (No.5). pp. 388-392. doi:10.1038/nchem.1024 ISSN 1755-4330.

Pawar, Vidya, De, Antara, Briggs, Laura, Omar, Mahmoud M., Sweeney, Sean T., Lord, Mike, Roberts, L. M. (Lynne M.), Spooner, Robert A. and Moffat, Kevin G. (2011) RNAi screening of Drosophila (Sophophora) melanogaster S2 cells for ricin sensitivity and resistance. Journal of Biomolecular Screening, Vol.16 (No.4). pp. 436-442. doi:10.1177/1087057110397890 ISSN 1087-0571.

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Vogler, Amy J., Chan, Fabien, Wagner, David M., Roumagnac, Philippe, Lee, Judy, Nera, Roxanne, Eppinger, Mark, Ravel, Jacques, Rahalison, Lila, Rasoamanana, Bruno W., Beckstrom-Sternberg, Stephen M., Achtman, Mark, Chanteau, Suzanne and Keim, Paul (2011) Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar. PLoS Neglected Tropical Diseases, Volume 5 (Number 9). Article number e1319. doi:10.1371/journal.pntd.0001319 ISSN 1935-2727.

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Schmidtke, Kelly, Katz, Jeffrey S. and Wright, Anthony A. (2009) Differential outcomes facilitate same / different concept learning. Animal Cognition, Volume 13 (Number 3). pp. 583-589. doi:10.1007/s10071-009-0292-2 ISSN 1435-9448.

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Mathur, Raman and O'Connor, Peter B. (2009) Artifacts in fourier transform mass spectrometry. Rapid Communications in Mass Spectrometry, Vol.23 (No.4). pp. 523-529. doi:10.1002/rcm.3904 ISSN 09514198.

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Feelisch, Martin, Fernandez, Bernadette O., Bryan, Nathan S., Garcia-Saura, Maria Francisca, Bauer, Selena, Whitlock, David R., Ford, Peter C., Janero, David R., Rodriguez, Juan and Ashrafian, Houman (2008) Tissue processing of nitrite in hypoxia : an intricate interplay of nitric oxide-generating and -scavenging systems. Journal of Biological Chemistry, Vol.283 (No.49). pp. 33927-33934. doi:10.1074/jbc.M806654200 ISSN 0021-9258.

Mathur, Raman, Knepper, R. W. and O'Connor, Peter B. (2008) A low-noise broadband cryogenic preamplifier operated in a high-field superconducting magnet. IEEE Transactions on Applied Superconductivity, Vol.18 (No.4). pp. 1781-1789. doi:10.1109/TASC.2008.2007272 ISSN 1051-8223.

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Yang, Y. (Yan), Yi, MinKyung, Evans, David J., Simmonds, Peter and Lemon, Stanley M. (2008) Identification of a Conserved RNA Replication Element (cre) within the 3D(pol)-Coding Sequence of Hepatoviruses. Journal of Virology, Volume 82 (Number 20). pp. 10118-10128. doi:10.1128/JVI.00787-08 ISSN 0022-538X.

Melenhorst, Jan Joseph, Scheinberg, Phillip, Chattopadhyay, Pratip K., Lissina, Anna, Gostick, Emma, Cole, David K., Wooldridge, L., Berg, Hugo van den, Bornstein, Ethan, Hensel, Nancy F., Douek, Daniel, Roederer, Mario, Sewell, Andrew K., Barrett, A. John and Price, D. A. (2008) Detection of low avidity CD8(+) T cell populations with coreceptor-enhanced peptide-major histocompatibility complex class I tetramers. Journal of Immunological Methods, Vol.338 (No.1-2). pp. 31-39. doi:10.1016/j.jim.2008.07.008 ISSN 0022-1759.

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Read, Jonathan M., Eames, Ken T. D. and Edmunds, W. John (2008) Dynamic social networks and the implications for the spread of infectious disease. Journal of The Royal Society Interface, Vol.5 (No.26). pp. 1001-1007. doi:10.1098/rsif.2008.0013 ISSN 1742-5689.

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Tildesley, Michael J., Deardon, Rob, Savill, Nicholas J., Bessell, Paul R., Brooks, Stephen P., Woolhouse, Mark E. J., Grenfell, Bryan T. and Keeling, Matthew James (2008) Accuracy of models for the 2001 foot-and-mouth epidemic. Proceedings of the Royal Society B. Biological Sciences , Vol.275 (No.1641). pp. 1459-1468. doi:10.1098/rspb.2008.0006 ISSN 0962-8452.

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Lalo, Ulyana, Pankratov, Yuriy, Wichert, Sven P., Rossner, Moritz J., North, R. Alan, Kirchhoff, Frank and Verkhratskiĭ, A. N. (Alekseĭ Nestorovich) (2008) P2X1 and P2X5 subunits form the functional P2X receptor in mouse cortical astrocytes. Journal of Neuroscience, Vol.28 (No.21). pp. 5473-5480. doi:10.1523/JNEUROSCI.1149-08.2008 ISSN 0270-6474.

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Kirilenko, Pavel, Weierud, Frida K., Zorn, Aaron M. and Woodland, Hugh R. (2008) The efficiency of Xenopus primordial germ cell migration depends on the germplasm mRNA encoding the PDZ domain protein Grip2. Differentiation, Volume 76 (Number 4). pp. 392-403. doi:10.1111/j.1432-0436.2007.00229.x ISSN 0301-4681.

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Mo, SangJoon, Sydor, Paulina K., Corre, Christophe, Alhamadsheh, Mamoun M., Stanley, Anna E., Haynes, Stuart W., Song, Lijiang, Reynolds, Kevin A. and Challis, Gregory L. (2008) Elucidation of the Streptomyces coelicolor pathway to 2-undecylpyrrole, a key intermediate in undecylprodiginine and streptorubin B biosynthesis. Chemistry & Biology, Vol.15 (No.2). pp. 137-148. doi:10.1016/j.chembiol.2007.11.015 ISSN 1074-5521.

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Beck, Margaret, Jones, C. K. R. T. (Christopher K. R. T.), Schaeffer, David G. and Wechselberger, Martin (2008) Electrical waves in a one-dimensional model of cardiac tissue. SIAM Journal on Applied Dynamical Systems, Vol.7 (No.4). pp. 1558-1581. doi:10.1137/070709980 ISSN 1536-0040.

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Book Item

Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. In: Research in Computational Molecular Biology : Proceedings of the 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Lecture Notes in Computer Science, Volume 5541 . Berlin Heidelberg: Springer, pp. 201-216. ISBN 9783642020087

Conference Item

Lusczek, Elizabeth R., Vincent, Tyrone, Kulkarni, Vishwesh V., Mulier, Kristine and Beilman, Greg (2014) Carbohydrate prefeeding affects the metabolic response to polytrauma, hemorrhagic shock, and resuscitation in serum metabolic networks. In: International Conference on Complex Acute Illness. Published in: Journal of Critical Care, 28 (6). e35-e36. ISSN 0883-9441.

Emmanuel de los Santos, L. C., Hsiao, V., Whitaker, W. R., Dueber, J. E. and Murray, Richard M. (2013) Design and implementation of a biomolecular circuit for tracking protein concentration. In: American Control Conference 2013, Washington, DC, 17-19 Jun 2013. Published in: Proceedings of American Control Conference 2013 pp. 2290-2294.

Stanley, H. Eugene, Buldyrev, Sergey V., Franzese, Giancarlo, Havlin, Shlomo, Mallamace, F., Kumar, Pradeep, Plerou, V. and Preis, Tobias (2010) Correlated randomness and switching phenomena. In: Statistical, Fluid and Biological Physics Problems : An MIT Symposium and Articles dedicated to A. Nihat Berker on his 60th Birthday. Published in: Physica A : statistical mechanics and its applications, Volume 389 (Number 15). pp. 2880-2893. doi:10.1016/j.physa.2010.02.023 ISSN 0378-4371 .

Antonysunil, Adaikalakoteswari, Perkins, B., Krolewski, A. S., Rabbani, Naila and Thornalley, Paul J. (2008) Thiamine status and risk of early renal function decline in type 1 diabetic patients. In: 43rd General Assembly of the European Association for the Study of Diabetes, Amsterdam, 20 September 2007. Published in: Diabetologia, Vol.51 (Suppl.1). S98-S98. ISSN 0012-186X.

Journal Item

(2010) Supplementary information to support : 'Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity'. Nature Genetics, 42 (12). pp. 1140-1143. doi:10.1038/ng.705