Journal Article

Allaby, Robin G.. (2010) Integrating the processes in the evolutionary system of domestication. Journal of Experimental Botany, Vol.61 (No.4). pp. 935-944. ISSN 0022-0957

Allaby, Robin G. and Woodwark, Mathew. (2007) Phylogenomic analysis reveals extensive phylogenetic mosaicism in the Human GPCR Superfamily. Evolutionary Bioinformatics, Vol.3 . pp. 357-370. ISSN 1176-9343

Allender, Charlotte J. and King , Graham J.. (2010) Origins of the amphiploid species Brassica napus L. investigated by chloroplast and nuclear molecular markers. BMC Plant Biology, Vol.10 (Article 54). ISSN 1471-2229

. (2011) Association between Prostinogen (KLK15) genetic variants and prostate cancer risk and aggressiveness in Australia and a meta-analysis of GWAS data. PLoS ONE, Vol.6 (No.11). e26527. ISSN 1932-6203

Australian Ovarian Cancer Study Group, Peter MacCallum Hospital (Melbourne, Vic.). Cancer Institute, Ovarian Cancer Association (Including:

). (2011) Functional polymorphisms in the TERT promoter are associated with risk of serous epithelial ovarian and breast cancers. PLoS ONE, Vol.6 (No.9). ISSN 1932-6203

Calvo-Bado, Leo A., Green, Laura E., Medley, Graham, Ul-Hassan, Atiya, Grogono-Thomas, R., Buller, Nicky B., Kaler, Jasmeet, Russell, Claire L., Kennan, Ruth M., Rood, Julian I. and Wellington, E. M. H. (Elizabeth M. H.), 1954-. (2010) Detection and diversity of a putative novel heterogeneous polymorphic proline-glycine repeat (Pgr) protein in the footrot pathogen Dichelobacter nodosus. Veterinary Microbiology, Vol.147 (No.3-4). pp. 358-366. ISSN 0378-1135

Carson, Connor, Antoniou, Maria, Begoña Ruiz-Argüello, Maria, Alcami, Antonio, Christodoulou, Vasiliki , Messaritakis, Ippokratis, Blackwell, Jenefer M. and Courtenay, Orin. (2008) A prime/boost DNA/Modified vaccinia virus Ankara vaccine expressing recombinant Leishmania DNA encoding TRYP is safe and immunogenic in outbred dogs, the reservoir of zoonotic visceral leishmaniasis. Vaccine, Vol.27 (No.7). pp. 1080-1086. ISSN 0264-410X

Cevik, Volkan, Ryder, Carol D., Popovich, Alexandra, Manning, Kenneth, King , Graham J. and Seymour, G. B. (Graham B.). (2010) A FRUITFULL-like gene is associated with genetic variation for fruit flesh firmness in apple (Malus domestica Borkh.). Tree Genetics & Genomes, Vol.6 (No.2). pp. 271-279. ISSN 1614-2942

Chan, Andrew H., Jenkins, Paul A. and Song, Yun S.. (2012) Genome-wide fine-scale recombination rate variation in Drosophila melanogaster. PLoS Genetics, Vol.8 (No.12). e1003090. ISSN 1553-7390

Chan, Yi-Wah, Mohr, Remus, Millard, Andrew D., Holmes, Antony B., Larkum, A. W. D., Whitworth, Anna L., Mann, Nicholas H., Scanlan, David J. , Hess, Wolfgang R. and Clokie, Martha R. J.. (2011) Discovery of cyanophage genomes which contain mitochondrial DNA polymerase. Molecular Biology and Evolution, Vol.28 (No.8). pp. 2269-2274. ISSN 0737-4038

Dame, Remus T. (Remus Thei), Kalmykowa, Olga J. and Grainger, David C.. (2011) Chromosomal macrodomains and associated proteins : implications for DNA organization and replication in gram negative bacteria. PLoS Genetics, Vol.7 (No.6). e1002123. ISSN 1553-7390

Davis, Seth J. and Millar, A. J. (Andrew J.). (2001) Watching the hands of the Arabidopsis biological clock. Genome Biology, Vol.2 (No.3). ISSN 1474-7596

Devran, Z., Süğüt, M. A. , Gözel, U. , Tör, Mahmut and Elekçioglu, I. H.. (2008) Analysis of genetic variation between populations of Meloidogyne spp. from Turkey. Russian Journal of Nematology, Vol.16 (No.2). pp. 143-149. ISSN 0869-6918

Eastwood, Daniel C., Mead, A. (Andrew), Sergeant, Martin J. and Burton, Kerry S.. (2008) Statistical modelling of transcript profiles of differentially regulated genes. BMC Molecular Biology, Vol.9 (No.66). ISSN 1471-2199

Ge, Tian, Feng, Jianfeng, Hibar, Derrek P., Thompson, Paul M. and Nichols, Thomas E.. (2012) Increasing power for voxel-wise genome-wide association studies : the random field theory, least square kernel machines and fast permutation procedures. NeuroImage, Vol.63 (No.2). pp. 858-873. ISSN 1053-8119

Ghafari , Fataneh, Gutierrez , Carlos G. and Hartshorne, Geraldine M.. (2007) Apoptosis in mouse fetal and neonatal oocytes during meiotic prophase one. BMC Development Biology, Vol.7 . p. 87. ISSN 1471-213x

Glaysher, Sharon, Yiannakis, Dennis, Gabriel, Francis G., Johnson, Penny, Polak, Marta E., Knight, Louise A., Goldthorpe, Zoe, Peregrin, Katharine, Gyi, Mya, Modi, Paul, Rahamim, Joe, Smith, Mark E., Dr., Amer, Khalil, Addis, B. J. (Bruce J.), Poole, Matthew, Narayanan, Ajit, Gulliford, Tim J., Andreotti, Peter Eugene, 1951- and Cree, Ian A.. (2009) Resistance gene expression determines the in vitro chemosensitivity of non-small cell lung cancer (NSCLC). BMC Cancer, Vol.9 (No.1). p. 300. ISSN 1471-2407

Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, D. A. (David A.), Davis, Julian R. E. and White, Michael R. H.. (2011) Dynamic analysis of stochastic transcription cycles. PLos Biology, Vol.9 (No.4). ISSN 1545-7885

Hultén, Maj A.. (2011) On the origin of crossover interference : a chromosome oscillatory movement (COM) model. Molecular Cytogenetics, Vol.4 (No.10). ISSN 1755-8166

Hultén, Maj A., Jonasson, Jon, Nordgren, Ann and Iwarsson, Erik. (2010) Germinal and somatic trisomy 21 mosaicism : how common is it, what are the implications for individual carriers and how does it come about? Current Genomics, Vol.11 (No.6). pp. 409-419. ISSN 1389-2029

Hultén, Maj A., Patel, Suketu D., Westgren, Magnus, Papadogiannakis, Nikos, Jonsson, Anna Maria, Jonasson, Jon and Iwarsson, Erik. (2010) On the paternal origin of trisomy 21 Down syndrome. Molecular Cytogenetics, Vol.3 (No.1). p. 4. ISSN 1755-8166

Iqbal, Mudassar, Mast, Yvonne, Amin, Rafat, Hodgson, D. A. (David A.), Wohlleben, W. and Burroughs, Nigel John. (2012) Extracting regulator activity profiles by integration of de novo motifs and expression data : characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor. Nucleic Acids Research, Vol.40 (No.12). pp. 5227-5239. ISSN 0305-1048

Jaakola, Laura, Poole, Mervin, Jones, Matthew O., Kämäräinen-Karppinen, Terttu, Koskimäki, Janne J., Hohtola, Anja, Häggman, Hely, Fraser, Paul D., Manning, Kenneth, King , Graham J., Thomson, H. (Helen) and Seymour, G. B. (Graham B.). (2010) A SQUAMOSA MADS-box gene involved in the regulation of anthocyanin accumulation in bilberry fruits. Plant Physiology, Vol.153 (No.4). ISSN 0032-0889

Jenkins, Dafyd J. and Stekel, Dov, 1971-. (2010) De novo evolution of complex, global and hierarchical gene regulatory mechanisms. Journal of Molecular Evolution, Vol.71 (No.2). pp. 128-140. ISSN 0022-2844

Jensen, Brita Dahl, Vicente, Joana G., Manandhar, Hira Kaji and Roberts, Steven J.. (2010) Occurrence and diversity of Xanthomonas campestris pv. campestris in vegetable brassica fields in Nepal. Plant Disease, Vol.94 (No.3). pp. 298-305. ISSN 0191-2917

Kang, Jing, Ph.D., Xu, Bing, Yao, Ye, Lin, Wei, Hennessy, Conor, Fraser, Peter and Feng, Jianfeng. (2011) A dynamical model reveals gene co-localizations in nucleus. PLoS Computational Biology, Vol.7 (No.7). e1002094. ISSN 1553-734X

Keeling, Matthew James and White, Peter, 1931-. (2011) Targeting vaccination against novel infections : risk, age and spatial structure for pandemic influenza in Great Britain. Journal of the Royal Society - Interface, Vol.8 (No.58). pp. 661-670. ISSN 1742-5662

Kelly, M. Ann , Rees, Simon D., Hydrie, M. Zafar I., Shera, A. Samad, Bellary, Srikanth, O'Hare, J. Paul, Kumar, Sudhesh, Taheri, S., Basit, Abdul and Barnett, Anthony H.. (2012) Circadian gene variants and susceptibility to type 2 diabetes : a pilot study. PLoS ONE, Vol.7 (No.4). e32670. ISSN 1932-6203

Kerr, Gary W., Sarkar, Sourav, Tibbles, Katherine L., Petronczki, Mark, Millar, Jonathan B. A. and Arumugam, Prakash . (2011) Meiotic nuclear divisions in budding yeast require PP2ACdc55-mediated antagonism of Net1 phosphorylation by Cdk. The Journal of Cell Biology, Vol.193 (No.7). pp. 1157-1166. ISSN 0021-9525

Kiddle, Steven J., Windram, Oliver P., McHattie, Stuart, Mead, A. (Andrew), Beynon, Jim, 1956-, Buchanan-Wollaston, Vicky, Denby, Katherine J. and Mukherjee, Sach. (2009) Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana. Bioinformatics, Vol.26 (No.3). pp. 355-362. ISSN 1367-4811

Kochunov, Peter, Glahn, David C., Nichols, Thomas E., Winkler, Anderson M., Hong, Elliot L., Holcomb, Henry H., Stein, Jason L., Thompson, Paul M., Curran, Joanne E., Carless, Melanie A., Olvera, Rene L., Johnson, Matthew P., Cole, Shelley A., Kochunov, Valeria, Kent, Jack and Blangero, John. (2011) Genetic analysis of cortical thickness and fractional anisotropy of water diffusion in the brain. Frontiers in Neuroscience, Vol.5 . p. 120. ISSN 1662-4548

Komorowski, Michal, Finkenstädt, Bärbel, Harper, Claire V. and Rand, D. A. (David A.). (2009) Bayesian inference of biochemical kinetic parameters using the linear noise approximation. BMC Bioinformatics, Vol.10 (No.343). ISSN 1471-2105

. (2011) Identification of a novel prostate cancer susceptibility variant in the KLK3 gene transcript. Human Genetics, Vol.129 (No.6). pp. 687-694. ISSN 1432-1203

Krishna, Ritesh V., Li, Chang-Tsun and Buchanan-Wollaston, Vicky. (2010) A temporal precedence based clustering method for gene expression microarray data. BMC Bioinformatics, Vol.11 . Article 68. ISSN 1471-2105

Love, Christopher G., Graham, Neil S. , Ó Lochlainn, Seosamh, Bowen, Helen C., May, Sean T., White, Philip J., Broadley, Martin R., Hammond, John P. and King , Graham J.. (2010) A Brassica exon array for whole-transcript gene expression profiling. PL o S One, Vol.5 (No.9). ISSN 1932-6203

Marenduzzo, Davide, Micheletti, C. (Cristian) and Cook, P. R.. (2006) Entropy-driven genome organization. Biophysical Journal, Vol.90 (No.10). pp. 3712-3721. ISSN 0006-3495

Martens, Harald, Veflingstad, Siren R., Plahte, Erik, Martens, M. (Magni), Bertrand, Dominique and Omholt, Stig W.. (2009) The genotype-phenotype relationship in multicellular pattern-generating models - the neglected role of pattern descriptors. BMC Systems Biology, Vol.3 (Articl). ISSN 1752-0509

Morris, S. J. (Susan J.), Farley, Daniel C. and Leppard, Keith. (2010) Generation of cell lines to complement Adenovirus vectors using recombination-mediated cassette exchange. BioMed Central Ltd., Vol.10 (No.92). Article No.92. ISSN 1472-6750

Naylor, Richard William, 1983- and Jones, E. A. (Elizabeth A.). (2009) Notch activates Wnt-4 signalling to control medio-lateral patterning of the pronephros. Development , Vol.136 (No.21). pp. 3585-3595. ISSN 0950-1991

Nicodemi, Mario and Prisco, Antonella. (2007) Self-assembly and DNA binding of the blocking factor in X chromosome inactivation. PLoS Computational Biology, Vol.3 (No.11). pp. 2135-2142. ISSN 1553-734X

Nicodemi, Mario and Prisco, Antonella. (2009) Thermodynamic pathways to genome spatial organization in the cell nucleus. Biophysical Journal, Vol.96 (No.6). pp. 2168-2177. ISSN 0006-3495

Oakley, Brian B., Dowd, Scot E. and Purdy, Kevin J.. (2011) ThermoPhyl : a software tool for selecting phylogenetically optimized conventional and quantitative-PCR taxon-targeted assays for use with complex samples. FEMS Microbiology Ecology, Vol.77 (No.1). pp. 17-27. ISSN 1574-6941

Penfold, Christopher A., Brown, Paul E., Lawrence, Neil (Neil D.) and Goldman, Alastair S. H.. (2012) Modeling meiotic chromosomes indicates a size dependent contribution of telomere clustering and chromosome rigidity to homologue juxtaposition. PLoS Computational Biology, Vol.8 (No.5). e1002496. ISSN 1553-7358

. (2010) The scale of population structure in Arabidopsis thaliana. PLoS Genetics, Vol.6 (No.2). e1000843. ISSN 1553-7390

Pontiroli, Alessandra, Travis, Emma Rachel, Sweeney, F. P., Porter, David, Gaze, William H., Mason, Sam (Sam A.), Hibberd, V. (Victoria), Holden, Jennifer, Courtenay, Orin and Wellington, E. M. H. (Elizabeth M. H.), 1954-. (2011) Pathogen quantitation in complex matrices : a multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition. PL o S One, Vol.6 (No.3). e17916. ISSN 1932-6203

Páez, Carlos J., Schulz, Peter A., Wilson, Neil R. and Roemer, Rudolf A.. (2012) Robust signatures in the current–voltage characteristics of DNA molecules oriented between two graphene nanoribbon electrodes. New Journal of Physics, Vol.14 (No.9). 093049. ISSN 1367-2630

Rasmussen, Carl Edward, De la Cruz, Bernard J., Ghahramani, Zoubin and Wild, David L.. (2009) Modeling and visualizing uncertainty in gene expression clusters using Dirichlet process mixtures. IEEE - ACM Transactions on Computational Biology and Bioinformatics, Vol.6 (No.4). pp. 615-628. ISSN 1545-5963

Rees, Simon D., Hydrie, M. Zafar I., O'Hare, J. Paul, Kumar, Sudhesh, Shera, A. Samad, Basit, Abdul, Barnett, A. H. (Anthony H.), 1951- and Kelly, M. Ann. (2011) Effects of 16 genetic variants on fasting glucose and type 2 diabetes in South Asians : ADCY5 and GLIS3 variants may predispose to type 2 diabetes. PLoS ONE, Vol.6 (No.9). ISSN 1932-6203

Reid, J. E. (John E.), Evans, Kenneth J., Dyer, Nigel, Wernisch, Lorenz and Ott, Sascha. (2010) Variable structure motifs for transcription factor binding sites. BMC Genomics, Vol.11 (Article 30). ISSN 1471-2164

Reid, J. E. (John E.), Ott, Sascha and Wernisch, Lorenz. (2009) Transcriptional programs : modelling higher order structure in transcriptional control. BMC Bioinformatics, Vol.10 . Article no. 218. ISSN 1471-2105

Scialdone, Antonio and Nicodemi, Mario. (2008) Mechanics and dynamics of X-chromosome pairing at X inactivation. PL o S Computational Biology, Vol.4 (No.12). ISSN 1553-734X

Shi, Xiao Li, Marie, D. (Dominique), Jardillier, Ludwig, Scanlan, David J. and Vaulot, Daniel. (2009) Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean. PLoS One, Vol.4 (No.10). Article No. e7657. ISSN 1932-6203

Shih, Chi-Tin, Wells, Stephen A., Hsu, Ching-Ling, Cheng, Yun-Yin and Roemer, Rudolf A.. (2012) The interplay of mutations and electronic properties in disease-related genes. Scientific Reports, Vol.2 (No.272). ISSN 2045-2322

Smith, Edward M., Littrell, Jack and Olivier, M. (Michael). (2007) Automated SNP genotype clustering algorithm to improve data completeness in high-throughput SNP genotyping datasets from custom arrays. Genomics Proteomics & Bioinformatics, Vol.5 (No.3-4). pp. 256-259. ISSN 1672-0229

Smith, Edward M., Zhang, Y., Baye, T. M., Gawrieh, S., Cole, R., Blangero, J., Carless, Melanie A., Curran, Joanne E., Dyer, T. D., Abraham, L. J., Moses, E. K. (Eric Keith), Kissebah, Ahmed, Martin, L. J. (Lisa J.) and Olivier, M. (Michael). (2010) INSIG1 influences obesity-related hypertriglyceridemia in humans. Journal of Lipid Research, Vol.51 . pp. 701-708. ISSN 0022-2275

Soyer, Orkun S. and Pfeiffer, Thomas. (2010) Evolution under fluctuating environments explains observed robustness in metabolic networks. PLoS Computational Biology, Volume 6 (Number 8). Article no. e1000907. ISSN 1553-7358

Steinberg, Deborah Lynn. (2009) The search for the Jew's gene : science, spectacle, and the ethnic other. MediaTropes, Vol.2 (No.1). pp. 1-23. ISSN 1913-6005

Tesfaye, Mesfin, Silverstein, Kevin AT., Nallu, Sumitha, Wang, Lin, Botanga, Christopher J., Gomez, S. Karen, Costa, Liliana M., Harrison, Maria J., Samac, Deborah A., Glazebrook, Jane, Katagiri, Fumiaki, Gutierrez-Marcos, José F. and VandenBosch, Kathryn A.. (2013) Spatio-temporal expression patterns of Arabidopsis thaliana and Medicago truncatula defensin-like genes. PLoS One, Volume 8 (Number 3). Article no. e58992. ISSN 1932-6203

Turner, Matthew S. . (2000) Two time constants for the binding of proteins to DNA from micromechanical data. Biophysical Journal, Vol.78 (No.2). pp. 600-607. ISSN 0006-3495

Valdes, Ana M., Doherty, Sally A., Muir, Kenneth (Kenneth R.), Zhang, Weiya, Maciewicz, Rose A., Wheeler, Margaret, Arden, N. (Nigel), Cooper, Cyrus and Doherty, M., M.D.. (2012) Genetic contribution to radiographic severity in osteoarthritis of the knee. Annals of the Rheumatic Diseases, Vol.71 (No.9). pp. 1537-1540. ISSN 0003-4967

. (2011) Large scale replication study of the association between HLA class II/BTNL2 variants and osteoarthritis of the knee in European-descent populations. PLoS ONE, Vol.6 (No.8). ISSN 1932-6203

. (2011) The Ile585Val TRPV1 variant is involved in risk of painful knee osteoarthritis. Annals of the Rheumatic Diseases, Vol.70 (No.9). pp. 1556-1561. ISSN 0003-4967

Yuan, Yinyin, Li, Chang-Tsun and Windram, Oliver P.. (2011) Directed partial correlation : inferring large-scale gene regulatory network through induced topology disruptions. PL o S One, Vol.6 (No.4). ISSN 1932-6203

Zhang, Junlong, Zhang, F. (Fang), Didelot, Xavier, Bruce, Kimberley D., Cagampang, Felino R., Vatish, Manu, Hanson, Mark A., Lehnert, Hendrik, Ceriello, Antonio and Byrne, Christopher D.. (2009) Maternal high fat diet during pregnancy and lactation alters hepatic expression of insulin like growth factor-2 and key microRNAs in the adult offspring. BMC Genomics, Vol.10 (No.478). ISSN 1471-2164

Zou, Cunlu, Ladroue, Christophe, Guo, Shuixia and Feng, Jianfeng. (2010) Identifying interactions in the time and frequency domains in local and global networks : a Granger causality approach. BMC Bioinformatics, Vol.11 . Article 337. ISSN 1471-2105

Conference Item

Yuan, Yinyin and Li, Chang-Tsun (2009) Inferring causal relations from multivariate time series : a fast method for large-scale gene expression data. In: BioInformatics and BioEngineering (BIBE), 2009 Ninth IEEE International Conference on, Tʻai-chung shih (Taiwan), 2009 pp. 92-99.

Thesis or Dissertation

Abouna, Sylvie (2009) Non-beta-cell progenitors in pregnant mice and the origin and functionality of beta-cells after diabetic recovery in a c-Myc ablation model. PhD thesis, University of Warwick.

Bolt, Frances (2009) The population structure of the Corynebacterium diphtheriae group. PhD thesis, University of Warwick.

Broome, Mark John, 1979- (2008) Interaction of DNA with groove binding ligands. PhD thesis, University of Warwick.

Chen, Jing, 1957- (2001) Expression of corticotrophin-releasing hormone receptor subtypes in human myometrium and cloning of the promoter region for the CRH receptors type 2. PhD thesis, University of Warwick.

Crickmore, Neil, 1962- (1987) Analysis of a cell division gene cluster in "Escherichia coli". PhD thesis, University of Warwick.

Edworthy, Nicole Lynn (2008) Development and use of avian pneumovirus reverse genetics systems. PhD thesis, University of Warwick.

Janus, Ulrich (2008) Modelling and analysis of a genetic oscillator in E.coli. PhD thesis, University of Warwick.

Jeziorska, Danuta M. (2011) Identification and functional characterisation of novel conserved Hes1 cis-regulatory modules. PhD thesis, University of Warwick.

Khalifa, Ashraf (2012) Gene regulation in methanotrophs : evidence from Methylococcus capsulatus (Bath) and Methylosinus trichosporium (OB3b). PhD thesis, University of Warwick.

Koohy, Hashem (2010) Computational prediction of functional similarity of CRMs. PhD thesis, University of Warwick.

Krishna, Ritesh V. (2009) From gene-expressions to pathways. PhD thesis, University of Warwick.

Liverani, Silvia (2009) Bayesian clustering of curves and the search of the partition space. PhD thesis, University of Warwick.

McCormick, Rachel Jacqueline (2001) Investigations into Xpat, a novel gene expressed in the germ plasm and primordial germ cells of Xenopus laevis. PhD thesis, University of Warwick.

Morrissey, Edward R. (2012) Bayesian inference of causal gene networks. PhD thesis, University of Warwick.

Pateman, Cassandra Sophie Catherine (2002) RGS proteins and G protein signalling. PhD thesis, University of Warwick.

Puszyk, William Matthew (2008) Epigenetics of cell-free plasma DNA for non-invasive prenatal diagnosis of fetal aneuploidies. PhD thesis, University of Warwick.

Robson, Samuel Charles, 1982- (2008) Life or cell death: identifying c-Myc regulated genes in two distinct tissues. PhD thesis, University of Warwick.

Seville, Rachel Alice (2001) Annexin IV: a pronephros specific gene with a role in pronephric development. PhD thesis, University of Warwick.

Spensley, Mark (2007) Transcriptional regulation of the arabidopsis circadian clock component LHY. PhD thesis, University of Warwick.

Usher, Sarah Louise (2009) Nucleosome positioning in Arabidopsis. PhD thesis, University of Warwick.

Walley, Peter Glen (2007) Dissecting the genetic regulation of texture traits in tomato fruit. PhD thesis, University of Warwick.