Journal Article

Acevedo-Garcia, Johanna, Gruner, Katrin, Reinstädler, Anja, Kemen, Ariane, Kemen, Eric, Cao, Lingxue, Takken, Frank L. W., Reitz, Marco U., Schäfer, Patrick, O’Connell, Richard J., Kusch, Stefan, Kuhn, Hannah and Panstruga, Ralph (2017) The powdery mildew-resistant Arabidopsis mlo2 mlo6 mlo12 triple mutant displays altered infection phenotypes with diverse types of phytopathogens. Scientific Reports, 7 (1). 9319. doi:10.1038/s41598-017-07188-7

Adams, Sally and Carré, Isabelle A. (2011) Downstream of the plant circadian clock : output pathways for the control of physiology and development. Essays in Biochemistry, Vol.49 . pp. 53-69. doi:10.1042/BSE0490053

Adams, Sally, Grundy, Jack, Veflingstad, Siren R., Dyer, Nigel, Hannah, Matthew, Ott, Sascha and Carré, Isabelle A. (2018) Circadian control of abscisic acid biosynthesis and signalling pathways revealed by genome-wide analysis of LHY binding targets. New Phytologist, 220 (3). pp. 893-907. doi:10.1111/nph.15415

Adams, Sally, Manfield, Ian, Stockley, Peter and Carré, Isabelle A. (2015) Revised morning loops of the Arabidopsis circadian clock based on analyses of direct regulatory interactions. PLoS One, 10 (12). e0143943. doi:10.1371/journal.pone.0143943

Akman, Ozgur E., Rand, D. A. (David A.), Brown, Paul E. and Millar, A. J. (Andrew J.) (2010) Robustness from flexibility in the fungal circadian clock. BMC Systems Biology, Vol.4 (No.88). doi:10.1186/1752-0509-4-88

Alberti, Fabrizio (2016) Current trends in natural products research from the CBNP10 Symposium at Warwick. Exchanges: the Warwick Research Journal, 4 (1).

Alberti, Fabrizio, Foster, Gary D. and Bailey, Andy M. (2017) Natural products from filamentous fungi and production by heterologous expression. Applied Microbiology and Biotechnology, 101 (2). pp. 493-500. doi:10.1007/s00253-016-8034-2

Alexandersson, Erik, Becker, John V. W., Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J. and Vivier, Melané A. (2011) Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. BMC Research Notes, Vol.4 (No.1). p. 493. doi:10.1186/1756-0500-4-493

Ali, Muhammad Amjad, Wieczorek, Krzysztof, Kreil, David and Bohlmann, Holger (2014) The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in a Arabidopsis roots. PLoS One, Volume 9 (Number 7). Article number e102360. doi:10.1371/journal.pone.0102360

Allaby, Robin G., Ware, Roselyn and Kistler, Logan (2019) A re-evaluation of the domestication bottleneck from archaeogenomic evidence. Evolutionary Applications, 12 (1). pp. 29-37. doi:10.1111/eva.12680

Allen, Stuart C. H., Moore, Katherine A. H., Marsden, Catherine J., Fülöp, Vilmos, Moffat, Kevin G., Lord, Mike, Ladds, Graham and Roberts, L. M. (Lynne M.) (2007) The isolation and characterisation of temperature-dependent Ricin A chain molecules in Saccharomyces cerevisiae. FEBS Journal, Vol.274 (No.21). pp. 5586-5599. doi:10.1111/j.1742-4658.2007.06080.x

Allender, Charlotte J. and King , Graham J. (2010) Origins of the amphiploid species Brassica napus L. investigated by chloroplast and nuclear molecular markers. BMC Plant Biology, Vol.10 (Article 54). doi:10.1186/1471-2229-10-54

An, Hong, Qi, Xinshuai, Gaynor, Michelle L., Hao, Yue, Gebken, Sarah C., Mabry, Makenzie E., McAlvay, Alex C., Teakle, Graham R., Conant, Gavin C., Barker, Michael S., Fu, Tingdong, Yi, Bin and Pires, J. Chris (2019) Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. Nature Communications, 10 (1). 2878. doi:10.1038/s41467-019-10757-1

Armitage, Andrew D., Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata Species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10 . 3124. doi:10.3389/fmicb.2019.03124

Armitage, Andrew D., Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura, Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8 (1). 13530 . doi:10.1038/s41598-018-30335-7

Arnold, David (2008) Plant capitalism and company science: the Indian career of Nathaniel Wallich. Modern Asian Studies, Vol.42 (No.5). pp. 899-928. doi:10.1017/S0026749X0700296X

Arrieta, Jorge, Polin, Marco, Saleta-Piersanti, Ramon and Tuval, Idan (2019) Light control of localized photobioconvection. Physical Review Letters, 123 (15). 158101. doi:10.1103/PhysRevLett.123.158101

Atwell, Susanna, Corwin, Jason A., Soltis, Nicole E., Subedy, Anushryia, Denby, Katherine J. and Kliebenstein, Daniel James (2015) Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity. Frontiers in Microbiology, 6 . pp. 1-14. 996. doi:10.3389/fmicb.2015.00996

Awan, Sajjad Zahoor, Chandler, Jake Owen, Harrison, Peter J., Sergeant, Martin J., Bugg, Tim and Thompson, Andrew David (2017) Promotion of germination using hydroxamic acid inhibitors of 9-cis-epoxycarotenoid dioxygenase. Frontiers in Plant Science, 8 . 357. doi:10.3389/fpls.2017.00357

Awan, Sajjad Zahoor, Footitt, Steven and Finch-Savage, William E. (2018) Interaction of maternal environment and allelic differences in seed vigour genes determines seed performance in Brassica oleracea. Plant Journal, 94 (6). pp. 1098-1108. doi:10.1111/tpj.13922

Bailey, Andy M., Alberti, Fabrizio, Kilaru, Sreedhar, Collins, Catherine M., de Mattos-Shipley, Kate, Hartley, Amanda J., Hayes, Patrick, Griffin, Alison, Lazarus, Colin M., Cox, Russell J., Willis, Christine L., O’Dwyer, Karen, Spence, David W. and Foster, Gary D. (2016) Identification and manipulation of the pleuromutilin gene cluster from Clitopilus passeckerianus for increased rapid antibiotic production. Scientific Reports, 6 (1). doi:10.1038/srep25202

Bailey, Mark, Srivastava, Anjil, Conti, Lucio, Nelis, Stuart, Zhang, Cunjin, Florance, Hannah, Love, Andrew, Milner, Joel, Napier, R. (Richard), Grant, Murray R. and Sadanandom, Ari (2016) Stability of small ubiquitin-like modifier (SUMO) proteases OVERLY TOLERANT TO SALT1 and -2 modulates salicylic acid signalling and SUMO1/2 conjugation in Arabidopsis thaliana. Journal of Experimental Botany, 67 (1). pp. 353-363. doi:10.1093/jxb/erv468

Baker, Lewis A., Horbury, Michael D., Greenough, Simon E., Allais, Florent, Walsh, Patrick S., Habershon, Scott and Stavros, Vasilios G. (2015) Ultrafast photoprotecting sunscreens in natural plants. The Journal of Physical Chemistry Letters, 7 (1). pp. 56-61. doi:10.1021/acs.jpclett.5b02474

Barnes, Christopher J., Burns, Caitlin A., van der Gast, Christopher J., McNamara, Niall P. and Bending, G. D. (2016) Spatio-temporal variation of core and satellite arbuscular mycorrhizal fungus communities in Miscanthus giganteus. Frontiers in Microbiology, 7 . 1278. doi:10.3389/fmicb.2016.01278

Barnes, Christopher J., van der Gast, Christopher J., Burns, Caitlin A., McNamara, Niall P. and Bending, G. D. (2016) Temporally variable geographical distance effects contribute to the assembly of root-associated fungal communities. Frontiers in Microbiology, 7 . pp. 1-13. 195. doi:10.3389/fmicb.2016.00195

Baroncelli, Riccardo, Amby, Daniel Buchvaldt, Zapparata, Antonio, Sarrocco, Sabrina, Vannacci, Giovanni, Le Floch, Gaétan, Harrison, Richard J., Holub, E. B., Sukno, Serenella A., Sreenivasaprasad, Surapareddy and Thon, Michael R. (2016) Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum. BMC Genomics, 17 (1). 555. doi:10.1186/s12864-016-2917-6

Baroncelli, Riccardo, Sreenivasaprasad, S., Sukno, S. A., Thon, M. R. and Holub, E. B. (2014) Draft genome sequence of Colletotrichum acutatum sensu lato (Colletotrichum fioriniae). Genome Announcements, Volume 2 (Number 2). e00112-e00114. doi:10.1128/genomeA.00112-14

Barons, Martine J., Hanea, Anca M., Wright, Sophia K., Baldock, Katherine C. R., Wilfert, Lena, Chandler, Dave, Datta, Samik, Fannon, Jessica, Hartfield, Chris, Lucas, Andrew, Ollerton, Jeff, Potts, Simon G. and Carreck, Norman L. (2018) Assessment of the response of pollinator abundance to environmental pressures using structured expert elicitation. Journal of Apicultural Research, 57 (5). pp. 593-604. doi:10.1080/00218839.2018.1494891

Baxter, Laura, Jironkin, Aleksey, Hickman, R. D. G., Moore, Jonathan D., Barrington, Christopher, Krusche, Peter, Dyer, Nigel, Buchanan-Wollaston, Vicky, Tiskin, Alexander, Beynon, Jim, Denby, Katherine J. and Ott, Sascha (2012) Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. The Plant Cell, Vol.24 (No.10). pp. 3949-3965. doi:10.1105/tpc.112.103010

Bechtold, Ulrike, Albihlal, Waleed S., Lawson, Tracy, Fryer, Michael J., Sparrow, Penelope A. C., Richard, François, Persad, Ramona, Bowden, Laura, Hickman, Richard D. G., Martin, Cathie, Beynon, Jim, Buchanan-Wollaston, Vicky, Baker, N. R., Morison, James I. L., Schoffl, Friedrich, Ott, Sascha and Mullineaux, Philip M. (2013) Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection. Journal of Experimental Botany, Volume 64 (Number 11). pp. 3467-3481. doi:10.1093/jxb/ert185

(2016) Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis. The Plant Cell, 28 (2). pp. 345-366. doi:10.1105/tpc.15.00910

Berry, P. M. (Peter M.), Teakle, Graham R., Foulkes, John, White, Philip J. and Spink, J. H. (John H.) (2008) Breeding for improved nitrogen use efficiency in oilseed rape. Acta Horticulturae, Vol.867 .

Bianchet, Chantal, Wong, Aloysius, Quaglia, Mara, Alqurashi, May, Gehring, Chris, Ntoukakis, Vardis and Pasqualini, Stefania (2019) An Arabidopsis thaliana leucine-rich repeat protein harbors an adenylyl cyclase catalytic center and affects responses to pathogens. Journal of Plant Physiology, 232 . pp. 12-22. doi:10.1016/j.jplph.2018.10.025

Bila, J., Mortensen, C. N., Andresen, M., Vicente, Joana G. and Wulff, E. G. (2013) Xanthomonas campestris pv. campestris race 1 is the main causal agent of black rot of Brassicas in Southern Mozambique. African Journal of Biotechnology, Volume 12 (Number 6). pp. 602-610.

Boniecka, Justyna, Prusińska, Justyna, Dąbrowska, Grażyna B. and Goc, Anna (2017) Within and beyond the stringent response-RSH and (p)ppGpp in plants. Planta, 246 (5). pp. 817-842. doi:10.1007/s00425-017-2780-y

Borhan, Mohammad H., Holub, E. B., Beynon, Jim, Rozwadowski, Kevin and Rimmer, Samuel Roger (2004) The Arabidopsis TIR-NB-LRR GeneRAC1 confers resistance to Albugo candida (white rust) and is dependent on EDS1 but not PAD4. Molecular Plant-Microbe Interactions, Volume 17 (Number 7). pp. 711-719. doi:10.1094/MPMI.2004.17.7.711

Bos, Jorunn I. B., Armstrong, Miles R., Gilroy, Eleanor M., Boevink, Petra C., Hein, Ingo, Taylor, Rosalind M., Zhendong, Tian, Engelhardt, Stefan, Vetukuri, Ramesh R., Harrower, Brian, Dixelius, Christina, Bryan, Glenn J., Sadanandom, Ari, Whisson, Stephen C., Kamoun, Sophien and Birch, Paul R. J. (2010) Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, Vol.107 (No.21). pp. 9909-9914. doi:10.1073/pnas.0914408107

(2011) High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell, The, Vol.23 (No.3). pp. 873-894. doi:10.1105/tpc.111.083345

Brestovitsky, Anna and Ezer, Daphne (2019) A mass participatory experiment provides a rich temporal profile of temperature response in spring onions. Plant Direct, 3 (3). e00126. doi:10.1002/pld3.126

Brilli, Matteo, Trabocchi, Andrea, Weil, Tobias, Cavalieri, Duccio and Stefanini, Irene (2017) Relations between effects and structure of small bicyclic molecules on the complex model system saccharomyces cerevisiae. Frontiers in Pharmacology, 8 . 170. doi:10.3389/fphar.2017.00170

Broadley, Martin R., White, Philip J., Hammond, John P., Graham, Neil S. , Bowen, Helen C., Emmerson, Z. F., Fray, R. G. , Iannetta, P. P. M., McNicol, J. W. and May, Sean T. (2008) Evidence of neutral transcriptome evolution in plants. New Phytologist, Vol.180 (No.3). pp. 587-593. doi:10.1111/j.1469-8137.2008.02640.x

Brooks, Rhiannon and Dixon, Ann M. (2020) Revealing the mechanism of protein-lipid interactions for a putative membrane curvature sensor in plant endoplasmic reticulum. Biochimica et biophysica acta. Biomembranes, 1862 (3). 183160. doi:10.1016/j.bbamem.2019.183160

Brumley, Douglas R., Polin, Marco, Pedley, T. J. and Goldstein, Raymond E. (2012) Hydrodynamic synchronization and metachronal waves on the surface of the colonial alga Volvox carteri. Physical Review Letters, Volume 109 (Number 26). Article number 268102 . doi:10.1103/PhysRevLett.109.268102

Bräutigam, Katharina, Vining, Kelly J., Lafon-Placette, Clément, Fossdal, Carl G., Mirouze, Marie, Jose, Gutiérrez-Marcos, Fluch, Silvia, Fraga, Mario Fernández, Guevara, M. Ángeles, Abarca, Dolores, Johnsen, Øystein, Maury, Stéphane, Strauss, Steven H., Campbell, Malcolm M., Rohde, Antje, Díaz-Sala, Carmen and Cervera, María-Teresa (2013) Epigenetic regulation of adaptive responses of forest tree species to the environment. Ecology and Evolution, Volume 3 (Number 2). pp. 399-415. doi:10.1002/ece3.461

Buckley, James, Holub, E. B., Koch, Marcus A., Vergeer, Philippine and Mable, Barbara K. (2018) Restriction associated DNA-genotyping at multiple spatial scales in Arabidopsis lyrata reveals signatures of pathogen-mediated selection. BMC Genomics, 19 (1). 496. doi:10.1186/s12864-018-4806-7

Bugg, Timothy D. H., Williamson, James J. and Rashid, Goran M. M. (2020) Bacterial enzymes for lignin depolymerisation : new biocatalysts for generation of renewable chemicals from biomass. Current Opinion in Chemical Biology, 55 . pp. 26-33. doi:10.1016/j.cbpa.2019.11.007

Burgess, Alexandra J., Retkute, Renata, Herman, Tiara and Murchie, Erik H. (2017) Exploring relationships between canopy architecture, light distribution, and photosynthesis in contrasting rice genotypes using 3D canopy reconstruction. Frontiers in Plant Science, 8 . 734. doi:10.3389/fpls.2017.00734

Burgess, Alexandra J., Retkute, Renata, Preston, Simon P., Jensen, Oliver E., Pound, Michael P., Pridmore, Tony P. and Murchie, Erik H. (2016) The 4-dimensional plant : effects of wind-induced canopy movement on light fluctuations and photosynthesis. Frontiers in Plant Science, 7 (1392). doi:10.3389/fpls.2016.01392

Busi, R. (Roberto), Neve, Paul and Powles, Stephen B. (2013) Evolved polygenic herbicide resistance in Lolium rigidum by low-dose herbicide selection within standing genetic variation. Evolutionary Applications, Volume 6 (Number 2). pp. 231-242. doi:10.1111/j.1752-4571.2012.00282.x

Busi, Roberto, Goggin, Danica E., Heap, Ian, Horak, Michael J., Jugulam, Mithila, Masters, Robert A., Napier, R., Riar, Dilpreet S., Satchivi, Norbert M., Torra, Joel, Westra, Phillip and Wright, Terry R. (2018) Weed resistance to synthetic auxin herbicides. Pest Management Science , 74 (10). pp. 2265-2276. doi:10.1002/ps.4823

Caillaud, Marie-Cécile, Wirthmueller, Lennart, Sklenar, Jan, Findlay, Kim, Piquerez, Sophie J. M., Jones, Alexandra M., Robatzek, Silke, Jones, Jonathan D. G. and Faulkner, Christine (2014) The plasmodesmal protein PDLP1 localises to haustoria-associated membranes during downy mildew infection and regulates callose deposition. PLoS Pathogens, Volume 10 (Number 11). Article number e1004496. doi:10.1371/journal.ppat.1004496

Cain, Peter, Holdermann, Iris, Sinning, Irmgard, Johnson, Arthur E. and Robinson, Colin (2011) Binding of chloroplast signal recognition particle to a thylakoid membrane protein substrate in aqueous solution and delineation of the cpSRP43–substrate interaction domain. Biochemical Journal, Vol.437 (No.1). pp. 149-155. doi:10.1042/BJ20110270

Calderón Villalobos, Luz Irina A, Lee, Sarah C., Oliveira, Cesar de, Ivetac, Anthony, Brandt, Wolfgang, Armitage, Lynne, Sheard, Laura B., Tan, Xu, Parry, Geraint, Mao, Haibin, Zheng, Ning, Napier, R. (Richard), Kepinski, Stefan and Estelle, Mark (2012) A combinatorial TIR1/AFB–Aux/IAA co-receptor system for differential sensing of auxin. Nature Chemical Biology, Volume 8 (Number 5). pp. 477-485. doi:10.1038/nchembio.926

Campbell, Kate, Vowinckel, Jakob, Mülleder, Michael, Malmsheimer, Silke, Lawrence, Nicola, Calvani, Enrica, Miller-Fleming, Leonor, Alam, Mohammad T., Christen, Stefan, Keller, Markus A. and Ralser, Markus (2015) Self-establishing communities enable cooperative metabolite exchange in a eukaryote. eLife, 4 . e09943.

Carrier, David J., Abu Bakar, Norliza Tendot, Swarup, Ranjan, Callaghan, Richard, Napier, R. (Richard), Bennett, Malcolm J. and Kerr, Ian D. (2008) The binding of auxin to the Arabidopsis auxin influx transporter AUX1. Plant Physiology, Volume 148 (Number 1). pp. 529-535. doi:10.1104/pp.108.122044

Carter, Anthony D., Bonyadi, Roxanna and Gifford, Miriam L. (2013) The use of fluorescence-activated cell sorting in studying plant development and environmental responses. The International Journal of Developmental Biology, Volume 57 . pp. 545-552. doi:10.1387/ijdb.130195mg

Castillo-Lorenzo, E., Finch-Savage, William E., Seal, C. E. and Pritchard, H. W. (2019) Adaptive significance of functional germination traits in crop wild relatives of Brassica. Agricultural and Forest Meteorology, 264 . pp. 343-350. doi:10.1016/j.agrformet.2018.10.014

Cevik, Volkan, Boutrot, Freddy, Apel, Wiebke, Robert-Seilaniantz, Alexandre, Furzer, Oliver J., Redkar, Amey, Castel, Baptiste, Kover, Paula, Prince, David C., Holub, E. B. and Jones, Jonathan D. G. (2019) Transgressive segregation reveals mechanisms of Arabidopsis immunity to Brassica-infecting races of white rust (Albugo candida). Proceedings of the National Academy of Sciences, 116 (7). pp. 2767-2773. doi:10.1073/pnas.1812911116

Chandler, Dave, Cooper, Emily and Prince, Gillian (2019) Are there risks to wild European bumble bees from using commercial stocks of domesticated Bombus terrestris for crop pollination? Journal of Apicultural Research . pp. 1-17. doi:10.1080/00218839.2019.1637238

Chow, Michael, Sklepari, Meropi, Frigerio, Lorenzo and Dixon, Ann M. (2018) Bacterial expression, purification and biophysical characterization of the smallest plant reticulon isoform, RTNLB13. Protein Expression and Purification, 152 . pp. 31-39. doi:10.1016/j.pep.2018.06.015

Cools, Katherine, Chope, Gemma A., Hammond, John P., Thompson, Andrew J. and Terry, Leon A. (Leon Alexander) (2011) Onion gene expression in response to ethylene and 1-MCP. Plant Physiology, Vol.156 (No.3). pp. 1639-1652.

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Dai, Jinhuo, Nanayakkara, Sepa, Lamb, Thomas, Clark, Andrew J., Guo, Si-Xuan, Zhang, Jie, Patti, Antonio F. and Saito, Kei (2016) Effect of the N-based ligands in copper complexes for depolymerisation of lignin. New Journal of Chemistry, 40 (4). pp. 3511-3519. doi:10.1039/c5nj03152d

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Davies, Lawrence O., Schäfer, Hendrik, Marshall, Samantha, Bramke, Irene, Oliver, Robin G. and Bending, G. D. (2013) Light structures phototroph, bacterial and fungal communities at the soil surface. PLoS One, Volume 8 (Number 7). Article number e69048. doi:10.1371/journal.pone.0069048

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Dufresne, Alexis, Ostrowski, Martin, Scanlan, David J. , Garczarek, Laurence, Mazard, Sophie, Palenik, Brian P., Paulsen, Ian T., Tandeau de Marsac, Nicole, Johnson, Justin, Post, Anton F., Hess, Wolfgang R. and Partensky, Frédéric (2008) Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria. Genome Biology, Vol.9 (No.R90). Article no.R90. doi:10.1186/gb-2008-9-5-r90

Dupree, Ray, Simmons, Thomas J., Mortimer, Jennifer C., Patel, Dharmesh, Iuga, Dinu, Brown, Steven P. and Dupree, Paul (2015) Probing the molecular architecture of Arabidopsis thaliana secondary cell walls using two- and three-dimensional 13C solid state nuclear magnetic resonance spectroscopy. Biochemistry, Volume 54 (Number 14). pp. 2335-2345. doi:10.1021/bi501552k

Durek, P., Schmidt, R., Heazlewood, J. L., Jones, Alexandra M., MacLean, Daniel, Nagel, Alexander, Kersten, Birgit and Schulze, W. X. (2010) PhosPhAt : the Arabidopsis thaliana phosphorylation site database : an update. Nucleic Acids Research, Volume 38 (Supplement 1). D828-D834. doi:10.1093/nar/gkp810

Durr, Julius, Papareddy, Ranjith, Nakajima, Keiji and Gutierrez-Marcos, José F. (2018) Highly efficient heritable targeted deletions of gene clusters and non-coding regulatory regions in Arabidopsis using CRISPR/Cas9. Scientific Reports, 8 (1). 4443. doi:10.1038/s41598-018-22667-1

Edwards, Kieron D., Akman, Ozgur E., Knox, Kirsten, Lumsden, P. J., Thomson, Adrian W., Brown, Paul E., Pokhilko, Alexandra, Kozma-Bognar, Laszlo, Nagy, Ferenc, Rand, D. A. and Millar, A. J. (2010) Quantitative analysis of regulatory flexibility under changing environmental conditions. Molecular Systems Biology, Vol.6 (No.424). doi:10.1038/msb.2010.81

Eichmann, Ruth and Schäfer, P. (Patrick) (2012) The endoplasmic reticulum in plant immunity and cell death. Frontiers in Plant Science, Volume 3 . Article number 200. doi:10.3389/fpls.2012.00200

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Fan, Jun, Mohareb, Fady, Jones, Alexandra M. and Bessant, Conrad (2012) MRMaid : the SRM assay design tool for Arabidopsis and other species. Frontiers in Plant Science, Volume 3 . Article number 164. doi:10.3389/fpls.2012.00164

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Finch-Savage, William E. and Footitt, Steven (2012) To germinate or not to germinate : a question of dormancy relief not germination stimulation. Seed Science Research, Vol.22 (No.4). pp. 243-248. doi:10.1017/S0960258512000165

Fita, Ana, Bowen, Helen C., Hayden, Rory M., Nuez, F., Picó, Belén and Hammond, John P. (2012) Diversity in expression of phosphorus (P) responsive genes in Cucumis Melo L. PLoS One, Vol.7 (No.4). Article no. e35387. doi:10.1371/journal.pone.0035387

Footitt, Steven, Awan, Sajjad Zahoor and Finch-Savage, William E. (2018) An improved method for the rapid isolation of RNA from Arabidopsis and seeds of other species high in polyphenols and polysaccharides. Seed Science Research, 28 (4). pp. 360-364. doi:10.1017/S0960258518000296

Footitt, Steven, Clay, Heather A., Dent, Katherine and Finch-Savage, William E. (2014) Environment sensing in spring-dispersed seeds of a winter annual Arabidopsis influences the regulation of dormancy to align germination potential with seasonal changes. New Phytologist, Volume 202 (Number 3). pp. 929-939. doi:10.1111/nph.12694

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Book Item

Ghaffari, Reza, Zhang, Fu, Iliescu, Daciana, Hines, Evor, Leeson, Mark S. and Napier, R. (2011) The analysis of plant's organic volatiles compounds with electronic nose and pattern recognition techniques. In: Qahwaji, Rami, 1972- and Green, Roger, 1951- and Hines, Evor, 1957-, (eds.) Applied signal and image processing : multidisciplinary advancements. Hershey, PA: IGI Global, pp. 115-126. ISBN 9781609604776

Conference Item

Jafarnejadsani, Hamidreza, Kim, Jongmin, Hovakimyan, Naira and Kulkarni, Vishwesh V. (2016) Load capacity improvements in transcriptional systems using discrete-time L1-adaptive control. In: 8th International Workshop on Bio-Design Automation, Newcastle-upon-Tyne, UK, 16-18 Aug 2016. Published in: Proceedings of 8th International Workshop on Bio-Design Automation pp. 75-76.

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Matsoukas, Ioannis G., Thomas, Brian and Massiah, Andrea J. (2005) Μοριακή και φυσιολογική ανάλυση της άνθισης. In: 22ο Πανελλήνιο Συνέδριο Ελληνικής Εταιρείας Επιστήµης Οπωροκηπευτικών, Πάτρα, Ἑλλάς-Greece, 19-21 October 2005 doi:10.1029/2004JC002566

Journal Item

Bruce, Gareth, Gu, Mei, Shi, Nongnong, Liu, Yule and Hong, Yiguo (2011) Influence of retinoblastoma-related gene silencing on the initiation of DNA replication by African cassava mosaic virus Rep in cells of mature leaves in Nicotiana benthamiana plants. Virology Journal, Vol.8 (No.1). p. 561. doi:10.1186/1743-422X-8-561

Costa, Liliana M. and Gutierrez-Marcos, José F. (2008) Retinoblastoma makes its mark on imprinting in plants. Plos Biology, Vol.6 (No.8). pp. 1631-1633. doi:10.1371/journal.pbio.0060212

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Retzer, Katarzyna, Singh, Gaurav and Napier, R. (Richard) (2018) It starts with TIRs. Nature Plants, 4 (7). pp. 410-411. doi:10.1038/s41477-018-0196-8

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Achom, Mingkee (2018) The role of Nodule Cysteine Rich secreted peptides in controlling nodulation. PhD thesis, University of Warwick.

Adebola, Titilayo Adunola (2017) The regime complex for plant variety protection: revisiting TRIPS implementation in Nigeria. PhD thesis, University of Warwick.

Amnuaykan, Piyatida (2015) Environmental and genetic regulation of juvenility in Antirrhinum majus. PhD thesis, University of Warwick.

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Atkinson, Laura Denise (2010) Genetic characterisation of post harvest spoilage in lettuce. PhD thesis, University of Warwick.

Bailey, Mark (Researcher in life sciences) (2014) An investigation into the role of SUMO proteases OVERLY TOLERANT to SALT1 and -2 in salicylic acid mediated defense signalling in Arabidopsis thaliana : toward understanding the role of SUMOylation in SA signalling. PhD thesis, University of Warwick.

Barnes, Christopher James (2014) Characterizing environmental, temporal and spatial scaling of Rhizosphere fungi in bioenergy crops : and their role in belowground carbon cycling. PhD thesis, University of Warwick.

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Bateman, Perry James Dominic (2014) Nutrient translocation of offspring in plants. PhD thesis, University of Warwick.

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Di Martino, Maura (2018) The role of NF-Y subunits in transcriptional regulation of the plant defense response. PhD thesis, University of Warwick.

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Gherman, Julia (2019) Engineering stress resilient plants using gene regulatory network rewiring. PhD thesis, University of Warwick.

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Granja Trávez, Rommel Santiago (2018) Biochemical characterization of multicopper oxidase enzymes from lignin degrading bacteria. PhD thesis, University of Warwick.

Grundy, Jack (2016) Control of environmental stress responses by the circadian clock and abscisic acid. PhD thesis, University of Warwick.

Guerreiro, Tailise Carolina de Souza (2019) Gene expression stochasticity, protein synthesis and the ageing process in the budding yeast Saccharomyces cerevisiae. PhD thesis, University of Warwick.

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Hales, Kathryn Rebecca (2018) Developing research tools to investigate the biology and epidemiology of Pythium violae causing cavity spot on carrot to enable disease management. PhD thesis, University of Warwick.

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Harrison, Peter J. (2014) Biochemical investigations of the carotenoid cleavage dioxygenase enzyme family. PhD thesis, University of Warwick.

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Huang, Ziyue (2013) Characterisation of dormancy cycling responses to environmental signals in contrasting Arabidopsis thaliana ecotypes. PhD thesis, University of Warwick.

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Irvine, Michael Alastair (2014) Pattern formation and persistence in spatial plant ecology. PhD thesis, University of Warwick.

Issa, Reem Adnan (2010) Identification of glucosinolate profile in Brassica oleracea for quantitative trait locus mapping. PhD thesis, University of Warwick.

Jenkins, Sascha (2018) Examining Identity, Phylogeny and Pathogenicity Factors in Fusarium Species Affecting Pea. PhD thesis, University of Warwick.

Jironkin, Aleksey (2013) Computational and experimental analysis of plant promoters : identifying functional elements. PhD thesis, University of Warwick.

Johnson, Richard Alan (1987) Properties and synthesis of the ribulose 1.5 bisphosphate carboxylase large subunit binding protein of Hordeum vulgare. PhD thesis, University of Warwick.

Kancy, Stephanie Jayne Thorley (2017) The role of histone acetyltransferases in plant immunity. PhD thesis, University of Warwick.

Kell, Christopher Martin (1991) A molecular genetic analysis of L-asparaginase II synthesis in Erwinia Chrysanthemi NCPPB 1066. PhD thesis, University of Warwick.

Kelly, David Jacob (1985) The role of the intra-cytoplasmic membrane system in photosynthesis and differentiation in Rhodomicrobium vannielii. PhD thesis, University of Warwick.

Kerr, Gary W. (2013) The role of protein phosphatase PP2ACdc55 during meiosis in Saccharomyces cerevisiae. PhD thesis, University of Warwick.

Kiddle, Steven J. (2012) Using systems biology approaches to elucidate gene regulatory networks controlling the plant defence response. PhD thesis, University of Warwick.

Kirkham, Amy R. (2009) Global perspectives on the molecular ecology of photosynthetic picoeukaryotes. PhD thesis, University of Warwick.

Lagator, Mato (2012) Experimental evolution of herbicide resistance in chlamydomonas reinhardtii. PhD thesis, University of Warwick.

Lamb, Francis Ian (1984) Castor bean lectins : construction and sequencing of cDNA clones. PhD thesis, University of Warwick.

Law, Philip John (2013) Quantitative analysis of time-series microarray data, with application to investigating responses to environmental stresses in arabidopsis. PhD thesis, University of Warwick.

Lawal, Almustapha (2019) Investigating salt stress resilience in Brassica oleracea. PhD thesis, University of Warwick.

Lewis, Laura Ann (2012) Investigating the influence of phytopathogenic effectors upon host transcription. PhD thesis, University of Warwick.

Lewis, Mary C., Ph.D. (2011) The development of assays to determine the effect of environmental factors on the viability of Plasmodiophora brassicae resting spores. PhD thesis, University of Warwick.

Li, Chunyang (2011) Functional analysis of Arabidopsis Flowering locus T RNA and protein. PhD thesis, University of Warwick.

Li, Michael Kok Keng (2009) Quantitative analysis of chloroplast protein targeting. PhD thesis, University of Warwick.

Littlemore, James (1998) The ecological impact of recreation in British temperate woodlands. PhD thesis, University of Warwick.

Locke, James C. W. (2006) A systems biology approach to the Arabidopsis circadian clock. PhD thesis, University of Warwick.

Marshall, Eleanor Jane (2011) Molecular characterisation of small cysteine rich peptides during Arabidopsis thaliana seed development. PhD thesis, University of Warwick.

Matsoukas, Ioannis G. (2010) Genetic and physiological analysis of juvenility in plants. PhD thesis, University of Warwick.

May, J. Michael J (1988) The expression of biologically active recombinant ricin A chain "in vitro". PhD thesis, University of Warwick.

McGurl, Barry Francis (1986) Purification and characterisation of putative protein allergens from the seeds of the castor oil plant, "Ricinus communis". PhD thesis, University of Warwick.

McHattie, Stuart (2011) Modelling transcriptional networks in plant senescence. PhD thesis, University of Warwick.

Mendes, Ana T. (2011) Regulation of storage oil metabolism at the transcriptional level : filling and emptying Arabidopsis thaliana seeds. PhD thesis, University of Warwick.

Mohamed, Atef M. (2012) Targeting siRNA hotspots : a novel strategy for controlling viral diseases. PhD thesis, University of Warwick.

Morgan, Catherine Ruth (1985) Properties and synthesis of the ribulose-1.5-bisphosphate carboxylase large subunit binding protein. PhD thesis, University of Warwick.

Mould, Ruth M. (1992) Protein targeting to the thylakoid lumen. PhD thesis, University of Warwick.

Naish, Matthew (2018) Control of developmental reprogramming during somatic cell regeneration in Arabidopsis thaliana. PhD thesis, University of Warwick.

Nurika, Irnia (2013) Mechanisms of lignocellulosic conversion by the brown rot fungus serpula lacrymans. PhD thesis, University of Warwick.

O'Connell, Michael A. (2012) New methods for the study of physicochemical processes relevant to the agrochemicals industry. PhD thesis, University of Warwick.

Olive, Mark R. (1988) Wheat starch biosynthesis : organ-specific expression of genes encoding ADP-glucose pyrophosphorylase. PhD thesis, University of Warwick.

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Pardal Bermejo, Alonso Javier (2017) Exploring the role of histone marks and chromatin remodelling ATPases in plant immunity. PhD thesis, University of Warwick.

Pateman, Cassandra Sophie Catherine (2002) RGS proteins and G protein signalling. PhD thesis, University of Warwick.

Peters, David William (1985) RNA synthesis in 'Candida albicans'. PhD thesis, University of Warwick.

Polański, Krzysztof (2015) Finding network modules and motifs regulating plant stress responses : integration and model-ling across multiple data sets. PhD thesis, University of Warwick.

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Price, Jonathan Lewis (2018) Insights into doubled haploid breeding programs from a genome-wide transcriptome and methylome analysis of Brassica oleracea. PhD thesis, University of Warwick.

Putra, Hadi (2018) Enhanced epigenetic inheritance in Arabidopsis thaliana. PhD thesis, University of Warwick.

Quareshy, Mussa (2016) Towards understanding chemical perception and selectivity for TIR1 and AFB5 auxin F-box receptor family members in Arabidopsis. PhD thesis, University of Warwick.

Ransom, Elspeth M. (2018) Elucidating key components of the Lactuca sativa and Sclerotinia plant-pathogen interaction. PhD thesis, University of Warwick.

Rashid, Goran M. M. (2015) Discovery of novel lignin oxidizing enzymes from Sphingobacterium sp.T2. PhD thesis, University of Warwick.

Rashid, Md. Harun Ar (2016) Genetic regulation of daylength adaptation and bulb formation in onion (Allium cepa L.). PhD thesis, University of Warwick.

Rhodes, Johanna (2012) Identifying gene regulatory networks common to multiple plant stress responses. PhD thesis, University of Warwick.

Rich, Charlotte (2018) Cell type-specific transcriptomic analyses of immunity in Arabidopsis thaliana roots. PhD thesis, University of Warwick.

Robinson, Colin (1984) Uptake and processing of chloroplast polypeptides. PhD thesis, University of Warwick.

Robson, Paul R. H. (1991) Towards the mechanism of carotenogenesis in Myxococcus xanthus. PhD thesis, University of Warwick.

Schafer, David Gerald (2013) Mechanisms underlying epigenetic gene silencing in maize. PhD thesis, University of Warwick.

Searle, Geoffrey Francis William (1969) Copper-proteins in photosynthesis. PhD thesis, University of Warwick.

Sgamma, Tiziana (2012) Regulation of juvenility in Antirrhinum majus. PhD thesis, University of Warwick.

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Sinfield, Oliver Paul (2019) Processing bodies are dynamically localised and associate with multiple organelles throughout the replicative lifespan of the yeast cell. PhD thesis, University of Warwick.

Smeeton, Rachel Clair (2010) An evaluation of the effects of over-production of ABA on whole plant water use, growth and productivity. PhD thesis, University of Warwick.

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Smith, Steve, 1952- (1980) Synthesis of the small subunit of ribulose-1,5-bisphosphate carboxylase. PhD thesis, University of Warwick.

Stoker, Claire (2016) Influence of the circadian clock on Arabidopsis defence against Botrytis cinerea. PhD thesis, University of Warwick.

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Dataset

Habershon, Scott and Baker, Lewis A. Data for Photosynthetic pigment-protein complexes as highly-connected networks : implications for robust energy transport. [Dataset]