Journal Article

Acevedo-Garcia, Johanna, Gruner, Katrin, Reinstädler, Anja, Kemen, Ariane, Kemen, Eric, Cao, Lingxue, Takken, Frank L. W., Reitz, Marco U., Schäfer, Patrick, O’Connell, Richard J., Kusch, Stefan, Kuhn, Hannah and Panstruga, Ralph (2017) The powdery mildew-resistant Arabidopsis mlo2 mlo6 mlo12 triple mutant displays altered infection phenotypes with diverse types of phytopathogens. Scientific Reports, 7 (1). 9319. doi:10.1038/s41598-017-07188-7

Adams, Sally and Carré, Isabelle A. (2011) Downstream of the plant circadian clock : output pathways for the control of physiology and development. Essays in Biochemistry, Vol.49 . pp. 53-69. doi:10.1042/BSE0490053

Adams, Sally, Manfield, Ian, Stockley, Peter and Carré, Isabelle A. (2015) Revised morning loops of the Arabidopsis circadian clock based on analyses of direct regulatory interactions. PLoS One, 10 (12). e0143943. doi:10.1371/journal.pone.0143943

Akman, Ozgur E., Rand, D. A. (David A.), Brown, Paul E. and Millar, A. J. (Andrew J.) (2010) Robustness from flexibility in the fungal circadian clock. BMC Systems Biology, Vol.4 (No.88). doi:10.1186/1752-0509-4-88

Alberti, Fabrizio (2016) Current trends in natural products research from the CBNP10 Symposium at Warwick. Exchanges: the Warwick Research Journal, 4 (1).

Alberti, Fabrizio, Foster, Gary D. and Bailey, Andy M. (2017) Natural products from filamentous fungi and production by heterologous expression. Applied Microbiology and Biotechnology, 101 (2). pp. 493-500. doi:10.1007/s00253-016-8034-2

Alexandersson, Erik, Becker, John V. W., Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J. and Vivier, Melané A. (2011) Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. BMC Research Notes, Vol.4 (No.1). p. 493. doi:10.1186/1756-0500-4-493

Ali, Muhammad Amjad, Wieczorek, Krzysztof, Kreil, David and Bohlmann, Holger (2014) The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in a Arabidopsis roots. PLoS One, Volume 9 (Number 7). Article number e102360. doi:10.1371/journal.pone.0102360

Allaby, Robin G., Ware, Roselyn and Kistler, Logan (2018) A re-evaluation of the domestication bottleneck from archaeogenomic evidence. Evolutionary Applications . doi:10.1111/eva.12680 (In Press)

Allen, Stuart C. H., Moore, Katherine A. H., Marsden, Catherine J., Fülöp, Vilmos, Moffat, Kevin G., Lord, Mike, Ladds, Graham and Roberts, L. M. (Lynne M.) (2007) The isolation and characterisation of temperature-dependent Ricin A chain molecules in Saccharomyces cerevisiae. FEBS Journal, Vol.274 (No.21). pp. 5586-5599. doi:10.1111/j.1742-4658.2007.06080.x

Allender, Charlotte J. and King , Graham J. (2010) Origins of the amphiploid species Brassica napus L. investigated by chloroplast and nuclear molecular markers. BMC Plant Biology, Vol.10 (Article 54). doi:10.1186/1471-2229-10-54

Arnold, David (2008) Plant capitalism and company science: the Indian career of Nathaniel Wallich. Modern Asian Studies, Vol.42 (No.5). pp. 899-928. doi:10.1017/S0026749X0700296X

Atwell, Susanna, Corwin, Jason A., Soltis, Nicole E., Subedy, Anushryia, Denby, Katherine J. and Kliebenstein, Daniel James (2015) Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity. Frontiers in Microbiology, 6 . pp. 1-14. 996. doi:10.3389/fmicb.2015.00996

Awan, Sajjad Zahoor, Chandler, Jake Owen, Harrison, Peter J., Sergeant, Martin J., Bugg, Tim and Thompson, Andrew David (2017) Promotion of germination using hydroxamic acid inhibitors of 9-cis-epoxycarotenoid dioxygenase. Frontiers in Plant Science, 8 . 357. doi:10.3389/fpls.2017.00357

Awan, Sajjad Zahoor, Footitt, Steven and Finch-Savage, William E. (2018) Interaction of maternal environment and allelic differences in seed vigour genes determines seed performance in Brassica oleracea. Plant Journal, 94 (6). pp. 1098-1108.

Bailey, Andy M., Alberti, Fabrizio, Kilaru, Sreedhar, Collins, Catherine M., de Mattos-Shipley, Kate, Hartley, Amanda J., Hayes, Patrick, Griffin, Alison, Lazarus, Colin M., Cox, Russell J., Willis, Christine L., O’Dwyer, Karen, Spence, David W. and Foster, Gary D. (2016) Identification and manipulation of the pleuromutilin gene cluster from Clitopilus passeckerianus for increased rapid antibiotic production. Scientific Reports, 6 (1). doi:10.1038/srep25202

Bailey, Mark, Srivastava, Anjil, Conti, Lucio, Nelis, Stuart, Zhang, Cunjin, Florance, Hannah, Love, Andrew, Milner, Joel, Napier, R. (Richard), Grant, Murray R. and Sadanandom, Ari (2016) Stability of small ubiquitin-like modifier (SUMO) proteases OVERLY TOLERANT TO SALT1 and -2 modulates salicylic acid signalling and SUMO1/2 conjugation in Arabidopsis thaliana. Journal of Experimental Botany, 67 (1). pp. 353-363. doi:10.1093/jxb/erv468

Baker, Lewis A., Horbury, Michael D., Greenough, Simon E., Allais, Florent, Walsh, Patrick S., Habershon, Scott and Stavros, Vasilios G. (2015) Ultrafast photoprotecting sunscreens in natural plants. The Journal of Physical Chemistry Letters, 7 (1). pp. 56-61. doi:10.1021/acs.jpclett.5b02474

Barnes, Christopher J., Burns, Caitlin A., van der Gast, Christopher J., McNamara, Niall P. and Bending, G. D. (2016) Spatio-temporal variation of core and satellite arbuscular mycorrhizal fungus communities in Miscanthus giganteus. Frontiers in Microbiology, 7 . 1278. doi:10.3389/fmicb.2016.01278

Barnes, Christopher J., van der Gast, Christopher J., Burns, Caitlin A., McNamara, Niall P. and Bending, G. D. (2016) Temporally variable geographical distance effects contribute to the assembly of root-associated fungal communities. Frontiers in Microbiology, 7 . pp. 1-13. 195. doi:10.3389/fmicb.2016.00195

Baroncelli, Riccardo, Amby, Daniel Buchvaldt, Zapparata, Antonio, Sarrocco, Sabrina, Vannacci, Giovanni, Le Floch, Gaétan, Harrison, Richard J., Holub, E. B., Sukno, Serenella A., Sreenivasaprasad, Surapareddy and Thon, Michael R. (2016) Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum. BMC Genomics, 17 (1). 555. doi:10.1186/s12864-016-2917-6

Baroncelli, Riccardo, Sreenivasaprasad, S., Sukno, S. A., Thon, M. R. and Holub, E. B. (2014) Draft genome sequence of Colletotrichum acutatum sensu lato (Colletotrichum fioriniae). Genome Announcements, Volume 2 (Number 2). e00112-e00114. doi:10.1128/genomeA.00112-14

Baxter, Laura, Jironkin, Aleksey, Hickman, R. D. G., Moore, Jonathan D., Barrington, Christopher, Krusche, Peter, Dyer, Nigel, Buchanan-Wollaston, Vicky, Tiskin, Alexander, Beynon, Jim, Denby, Katherine J. and Ott, Sascha (2012) Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. The Plant Cell, Vol.24 (No.10). pp. 3949-3965. doi:10.1105/tpc.112.103010

Bechtold, Ulrike, Albihlal, Waleed S., Lawson, Tracy, Fryer, Michael J., Sparrow, Penelope A. C., Richard, François, Persad, Ramona, Bowden, Laura, Hickman, Richard D. G., Martin, Cathie, Beynon, Jim, Buchanan-Wollaston, Vicky, Baker, N. R., Morison, James I. L., Schoffl, Friedrich, Ott, Sascha and Mullineaux, Philip M. (2013) Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection. Journal of Experimental Botany, Volume 64 (Number 11). pp. 3467-3481. doi:10.1093/jxb/ert185

(2016) Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis. The Plant Cell, 28 (2). pp. 345-366. doi:10.1105/tpc.15.00910

Berry, P. M. (Peter M.), Teakle, Graham R., Foulkes, John, White, Philip J. and Spink, J. H. (John H.) (2008) Breeding for improved nitrogen use efficiency in oilseed rape. Acta Horticulturae, Vol.867 .

Bila, J., Mortensen, C. N., Andresen, M., Vicente, Joana G. and Wulff, E. G. (2013) Xanthomonas campestris pv. campestris race 1 is the main causal agent of black rot of Brassicas in Southern Mozambique. African Journal of Biotechnology, Volume 12 (Number 6). pp. 602-610.

Boniecka, Justyna, Prusińska, Justyna, Dąbrowska, Grażyna B. and Goc, Anna (2017) Within and beyond the stringent response-RSH and (p)ppGpp in plants. Planta, 246 (5). pp. 817-842. doi:10.1007/s00425-017-2780-y

Borhan, Mohammad H., Holub, E. B., Beynon, Jim, Rozwadowski, Kevin and Rimmer, Samuel Roger (2004) The Arabidopsis TIR-NB-LRR GeneRAC1 confers resistance to Albugo candida (white rust) and is dependent on EDS1 but not PAD4. Molecular Plant-Microbe Interactions, Volume 17 (Number 7). pp. 711-719. doi:10.1094/MPMI.2004.17.7.711

Bos, Jorunn I. B., Armstrong, Miles R., Gilroy, Eleanor M., Boevink, Petra C., Hein, Ingo, Taylor, Rosalind M., Zhendong, Tian, Engelhardt, Stefan, Vetukuri, Ramesh R., Harrower, Brian, Dixelius, Christina, Bryan, Glenn J., Sadanandom, Ari, Whisson, Stephen C., Kamoun, Sophien and Birch, Paul R. J. (2010) Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, Vol.107 (No.21). pp. 9909-9914. doi:10.1073/pnas.0914408107

(2011) High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell, The, Vol.23 (No.3). pp. 873-894. doi:10.1105/tpc.111.083345

Brilli, Matteo, Trabocchi, Andrea, Weil, Tobias, Cavalieri, Duccio and Stefanini, Irene (2017) Relations between effects and structure of small bicyclic molecules on the complex model system saccharomyces cerevisiae. Frontiers in Pharmacology, 8 . 170. doi:10.3389/fphar.2017.00170

Broadley, Martin R., White, Philip J., Hammond, John P., Graham, Neil S. , Bowen, Helen C., Emmerson, Z. F., Fray, R. G. , Iannetta, P. P. M., McNicol, J. W. and May, Sean T. (2008) Evidence of neutral transcriptome evolution in plants. New Phytologist, Vol.180 (No.3). pp. 587-593. doi:10.1111/j.1469-8137.2008.02640.x

Brumley, Douglas R., Polin, Marco, Pedley, T. J. and Goldstein, Raymond E. (2012) Hydrodynamic synchronization and metachronal waves on the surface of the colonial alga Volvox carteri. Physical Review Letters, Volume 109 (Number 26). Article number 268102 . doi:10.1103/PhysRevLett.109.268102

Bräutigam, Katharina, Vining, Kelly J., Lafon-Placette, Clément, Fossdal, Carl G., Mirouze, Marie, Jose, Gutiérrez-Marcos, Fluch, Silvia, Fraga, Mario Fernández, Guevara, M. Ángeles, Abarca, Dolores, Johnsen, Øystein, Maury, Stéphane, Strauss, Steven H., Campbell, Malcolm M., Rohde, Antje, Díaz-Sala, Carmen and Cervera, María-Teresa (2013) Epigenetic regulation of adaptive responses of forest tree species to the environment. Ecology and Evolution, Volume 3 (Number 2). pp. 399-415. doi:10.1002/ece3.461

Buckley, James, Holub, E. B., Koch, Marcus A., Vergeer, Philippine and Mable, Barbara K. (2018) Restriction associated DNA-genotyping at multiple spatial scales in Arabidopsis lyrata reveals signatures of pathogen-mediated selection. BMC Genomics, 19 (1). 496. doi:10.1186/s12864-018-4806-7

Burgess, Alexandra J., Retkute, Renata, Herman, Tiara and Murchie, Erik H. (2017) Exploring relationships between canopy architecture, light distribution, and photosynthesis in contrasting rice genotypes using 3D canopy reconstruction. Frontiers in Plant Science, 8 . 734. doi:10.3389/fpls.2017.00734

Burgess, Alexandra J., Retkute, Renata, Preston, Simon P., Jensen, Oliver E., Pound, Michael P., Pridmore, Tony P. and Murchie, Erik H. (2016) The 4-dimensional plant : effects of wind-induced canopy movement on light fluctuations and photosynthesis. Frontiers in Plant Science, 7 (1392). doi:10.3389/fpls.2016.01392

Busi, R. (Roberto), Neve, Paul and Powles, Stephen B. (2013) Evolved polygenic herbicide resistance in Lolium rigidum by low-dose herbicide selection within standing genetic variation. Evolutionary Applications, Volume 6 (Number 2). pp. 231-242. doi:10.1111/j.1752-4571.2012.00282.x

Busi, Roberto, Goggin, Danica E., Heap, Ian, Horak, Michael J., Jugulam, Mithila, Masters, Robert A., Napier, R., Riar, Dilpreet S., Satchivi, Norbert M., Torra, Joel, Westra, Phillip and Wright, Terry R. (2017) Weed resistance to synthetic auxin herbicides. Pest Management Science . doi:10.1002/ps.4823 (In Press)

Caillaud, Marie-Cécile, Wirthmueller, Lennart, Sklenar, Jan, Findlay, Kim, Piquerez, Sophie J. M., Jones, Alexandra M., Robatzek, Silke, Jones, Jonathan D. G. and Faulkner, Christine (2014) The plasmodesmal protein PDLP1 localises to haustoria-associated membranes during downy mildew infection and regulates callose deposition. PLoS Pathogens, Volume 10 (Number 11). Article number e1004496. doi:10.1371/journal.ppat.1004496

Cain, Peter, Holdermann, Iris, Sinning, Irmgard, Johnson, Arthur E. and Robinson, Colin (2011) Binding of chloroplast signal recognition particle to a thylakoid membrane protein substrate in aqueous solution and delineation of the cpSRP43–substrate interaction domain. Biochemical Journal, Vol.437 (No.1). pp. 149-155. doi:10.1042/BJ20110270

Calderón Villalobos, Luz Irina A, Lee, Sarah C., Oliveira, Cesar de, Ivetac, Anthony, Brandt, Wolfgang, Armitage, Lynne, Sheard, Laura B., Tan, Xu, Parry, Geraint, Mao, Haibin, Zheng, Ning, Napier, R. (Richard), Kepinski, Stefan and Estelle, Mark (2012) A combinatorial TIR1/AFB–Aux/IAA co-receptor system for differential sensing of auxin. Nature Chemical Biology, Volume 8 (Number 5). pp. 477-485. doi:10.1038/nchembio.926

Campbell, Kate, Vowinckel, Jakob, Mülleder, Michael, Malmsheimer, Silke, Lawrence, Nicola, Calvani, Enrica, Miller-Fleming, Leonor, Alam, Mohammad T., Christen, Stefan, Keller, Markus A. and Ralser, Markus (2015) Self-establishing communities enable cooperative metabolite exchange in a eukaryote. eLife, 4 . e09943.

Carrier, David J., Abu Bakar, Norliza Tendot, Swarup, Ranjan, Callaghan, Richard, Napier, R. (Richard), Bennett, Malcolm J. and Kerr, Ian D. (2008) The binding of auxin to the Arabidopsis auxin influx transporter AUX1. Plant Physiology, Volume 148 (Number 1). pp. 529-535. doi:10.1104/pp.108.122044

Carter, Anthony D., Bonyadi, Roxanna and Gifford, Miriam L. (2013) The use of fluorescence-activated cell sorting in studying plant development and environmental responses. The International Journal of Developmental Biology, Volume 57 . pp. 545-552. doi:10.1387/ijdb.130195mg

Chow, Michael, Sklepari, Meropi, Frigerio, Lorenzo and Dixon, Ann M. (2018) Bacterial expression, purification and biophysical characterization of the smallest plant reticulon isoform, RTNLB13. Protein Expression and Purification, 152 . pp. 31-39. doi:10.1016/j.pep.2018.06.015

Cools, Katherine, Chope, Gemma A., Hammond, John P., Thompson, Andrew J. and Terry, Leon A. (Leon Alexander) (2011) Onion gene expression in response to ethylene and 1-MCP. Plant Physiology, Vol.156 (No.3). pp. 1639-1652.

Couto, Daniel, Niebergall, Roda, Liang, Xiangxiu, Bücherl, Christoph A., Sklenar, Jan, Macho, Alberto P., Ntoukakis, Vardis, Derbyshire, Paul, Altenbach, Denise, Maclean, Dan, Robatzek, Silke, Uhrig, Joachim, Menke, Frank, Zhou, Jian-Min and Zipfel, Cyril (2016) The Arabidopsis protein phosphatase PP2C38 negatively regulates the central immune kinase BIK1. PLoS Pathogens, 12 (8). e1005811. doi:10.1371/journal.ppat.1005811

Cunliffe, Michael, Whiteley, Andrew S., Newbold, Lindsay, Oliver, Anna, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2009) Comparison of bacterioneuston and bacterioplankton dynamics during a phytoplankton bloom in a fjord mesocosm. Applied and Environmental Microbiology, Vol.75 (No.22). pp. 7173-7181. doi:10.1128/AEM.01374-09

Dai, Jinhuo, Nanayakkara, Sepa, Lamb, Thomas, Clark, Andrew J., Guo, Si-Xuan, Zhang, Jie, Patti, Antonio F. and Saito, Kei (2016) Effect of the N-based ligands in copper complexes for depolymerisation of lignin. New Journal of Chemistry, 40 (4). pp. 3511-3519. doi:10.1039/c5nj03152d

Davies, L. R. and Allender, Charlotte J. (2017) Who is sowing our seeds? A systematic review of the use of plant genetic resources in research. Genetic Resources and Crop Evolution, 64 (8). pp. 1999-2008. doi:10.1007/s10722-017-0491-7

Davies, Lawrence O., Schäfer, Hendrik, Marshall, Samantha, Bramke, Irene, Oliver, Robin G. and Bending, G. D. (2013) Light structures phototroph, bacterial and fungal communities at the soil surface. PLoS One, Volume 8 (Number 7). Article number e69048. doi:10.1371/journal.pone.0069048

Davis, Seth J. and Millar, A. J. (Andrew J.) (2001) Watching the hands of the Arabidopsis biological clock. Genome Biology, Vol.2 (No.3). doi:10.1186/gb-2001-2-3-reviews1008

Dufresne, Alexis, Ostrowski, Martin, Scanlan, David J. , Garczarek, Laurence, Mazard, Sophie, Palenik, Brian P., Paulsen, Ian T., Tandeau de Marsac, Nicole, Johnson, Justin, Post, Anton F., Hess, Wolfgang R. and Partensky, Frédéric (2008) Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria. Genome Biology, Vol.9 (No.R90). Article no.R90. doi:10.1186/gb-2008-9-5-r90

Dupree, Ray, Simmons, Thomas J., Mortimer, Jennifer C., Patel, Dharmesh, Iuga, Dinu, Brown, Steven P. and Dupree, Paul (2015) Probing the molecular architecture of Arabidopsis thaliana secondary cell walls using two- and three-dimensional 13C solid state nuclear magnetic resonance spectroscopy. Biochemistry, Volume 54 (Number 14). pp. 2335-2345. doi:10.1021/bi501552k

Durek, P., Schmidt, R., Heazlewood, J. L., Jones, Alexandra M., MacLean, Daniel, Nagel, Alexander, Kersten, Birgit and Schulze, W. X. (2010) PhosPhAt : the Arabidopsis thaliana phosphorylation site database : an update. Nucleic Acids Research, Volume 38 (Supplement 1). D828-D834. doi:10.1093/nar/gkp810

Durr, Julius, Papareddy, Ranjith, Nakajima, Keiji and Gutierrez-Marcos, José F. (2018) Highly efficient heritable targeted deletions of gene clusters and non-coding regulatory regions in Arabidopsis using CRISPR/Cas9. Scientific Reports, 8 (1). 4443. doi:10.1038/s41598-018-22667-1

Edwards, Kieron D., Akman, Ozgur E., Knox, Kirsten, Lumsden, P. J., Thomson, Adrian W., Brown, Paul E., Pokhilko, Alexandra, Kozma-Bognar, Laszlo, Nagy, Ferenc, Rand, D. A. and Millar, A. J. (2010) Quantitative analysis of regulatory flexibility under changing environmental conditions. Molecular Systems Biology, Vol.6 (No.424). doi:10.1038/msb.2010.81

Eichmann, Ruth and Schäfer, P. (Patrick) (2012) The endoplasmic reticulum in plant immunity and cell death. Frontiers in Plant Science, Volume 3 . Article number 200. doi:10.3389/fpls.2012.00200

Erent, Muriel, Drummond, Douglas R. and Cross, R. A. (2012) S. pombe kinesins-8 promote both nucleation and catastrophe of microtubules. PLoS One, Vol.7 (No.2). e30738. doi:10.1371/journal.pone.0030738

Fan, Jun, Mohareb, Fady, Jones, Alexandra M. and Bessant, Conrad (2012) MRMaid : the SRM assay design tool for Arabidopsis and other species. Frontiers in Plant Science, Volume 3 . Article number 164. doi:10.3389/fpls.2012.00164

Feng, Jianfeng, Yi, Dongyun, Krishna, Ritesh, Guo, Shuixia and Buchanan-Wollaston, Vicky (2009) Listen to genes : dealing with microarray data in the frequency domain. PL o S One, Vol.4 (No.4). doi:10.1371/journal.pone.0005098

Finch-Savage, William E. and Footitt, Steven (2012) To germinate or not to germinate : a question of dormancy relief not germination stimulation. Seed Science Research, Vol.22 (No.4). pp. 243-248. doi:10.1017/S0960258512000165

Fita, Ana, Bowen, Helen C., Hayden, Rory M., Nuez, F., Picó, Belén and Hammond, John P. (2012) Diversity in expression of phosphorus (P) responsive genes in Cucumis Melo L. PLoS One, Vol.7 (No.4). Article no. e35387. doi:10.1371/journal.pone.0035387

Footitt, Steven, Clay, Heather A., Dent, Katherine and Finch-Savage, William E. (2014) Environment sensing in spring-dispersed seeds of a winter annual Arabidopsis influences the regulation of dormancy to align germination potential with seasonal changes. New Phytologist, Volume 202 (Number 3). pp. 929-939. doi:10.1111/nph.12694

Footitt, Steven, Huang, Ziyue, Ölcer-Footitt, Hülya, Clay, Heather A., Finch-Savage, William E. and Kranner, I. (2018) The impact of global warming on germination and seedling emergence in Alliaria petiolata, a woodland species with dormancy loss dependent on low temperature. Plant Biology, 20 (4). pp. 632-690. doi:10.1111/plb.12720

Footitt, Steven, Palleschi, Simonetta, Fazio, Eugenio, Palomba, Raffaele, Finch-Savage, William E. and Silvestroni, Leopoldo (2016) Ultra-weak photon emission from the seed coat in response to temperature and humidity - a potential mechanism for environmental signal transduction in the soil seed bank. Photochemistry and Photobiology, 92 (5). pp. 678-687. doi:10.1111/php.12616

Footitt, Steven, Ölcer-Footitt, Hülya, Hambidge, Angela J. and Finch-Savage, William E. (2017) A laboratory simulation of Arabidopsis seed dormancy cycling provides new insight into its regulation by clock genes and the dormancy-related genes DOG1 , MFT , CIPK23 and PHYA. Plant, Cell & Environment, 40 (8). pp. 1474-1486. doi:10.1111/pce.12940

Fukami, Hironobu, Chen, Chaolun Allen, Budd, Ann F., Collins, Allen, Wallace, Carden C., Chuang, Yao-Yang, Chen, Chienhsun, Dai, Chang-Feng, Iwao, Kenji, Sheppard, Charles (Charles R. C.) and Knowlton, Nancy (2008) Mitochondrial and nuclear genes suggest that stony corals are monophyletic but most families of stony corals are not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria). PL o S One, Vol.3 (No.9). doi:10.1371/journal.pone.0003222

Gao, Yuan, Liu, Jun, Pan, Xukun, Liu, Dingrong, Napier, R. (Richard) and Dong, Liyao (2018) Quinclorac resistance induced by the suppression of the expression of 1-aminocyclopropane-1-carboxylic acid (ACC) synthase and ACC oxidase genes in Echinochloa crus-galli var. zelayensis. Pesticide Biochemistry and Physiology, 146 . pp. 25-32. doi:10.1016/j.pestbp.2018.02.005

Gastner, Michael T., Oborny, Beata, Zimmermann, D. K. and Pruessner, Gunnar (2009) Transition from connected to fragmented vegetation across an environmental gradient: scaling laws in ecotone geometry. American Naturalist, Vol.174 (No.1). E23-E39. doi:10.1086/599292

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Gattolin, Stefano, Sorieul, Mathias, Hunter, P. R. (Paul R.), Khonsari, Roman H. and Frigerio, Lorenzo (2009) In vivo imaging of the tonoplast intrinsic protein family in Arabidopsis roots. BMC Plant Biology, Vol.9 . Article 133. doi:10.1186/1471-2229-9-133

Gifford, Miriam L., Banta, Joshua A., Katari, Manpreet S., Hulsmans, Jo, Chen, Lisa, Ristova, Daniela, Tranchina, Daniel, Purugganan, Michael D., Coruzzi, Gloria, Birnbaum, Kenneth D., Rosas, Ulises and Cibrian-Jaramillo, Angelica (2013) Plasticity regulators modulate specific root traits in discrete nitrogen environments. PLoS Genetics, Volume 9 (Number 9). Article number e1003760. doi:10.1371/journal.pgen.1003760

Gladders, P. (Peter), Smith, J. E., Kirkpatrick, L., Clewes, E., Grant, C., Barbara, Dez J., Barnes, A. V. and Lane, C. R. (2011) First record of verticillium wilt (Verticillium longisporum) in winter oilseed rape in the UK. New Disease Reports, Volume 23 (Number 8). doi:10.5197/j.2044-0588.2011.023.008

Gosling, Paul, Mead, A. (Andrew), Proctor, Maude, Hammond, John P. and Bending, G. D. (2013) Contrasting arbuscular mycorrhizal communities colonizing different host plants show a similar response to a soil phosphorus concentration gradient. New Phytologist, Volume 198 (Number 2). pp. 546-556. doi:10.1111/nph.12169

Granja-Travez, R. S., Wilkinson, Rachael, Persinoti, G. F., Squina, F. M., Fülöp, Vilmos and Bugg, Tim (2018) Structural and functional characterisation of multi-copper oxidase CueO from lignin-degrading bacterium Ochrobactrum sp. reveal its activity towards lignin model compounds and lignosulfonate. FEBS Journal, 285 (9). pp. 1684-1700. doi:10.1111/febs.14437

Grantham, Nicholas J., Wurman-Rodrich, Joel, Terrett, Oliver M., Lyczakowski, Jan J., Stott, Katherine, Iuga, Dinu, Simmons, Thomas J., Durand-Tardif, Mylene, Brown, Steven P., Dupree, Ray, Busse-Wicher, Marta and Dupree, Paul (2017) An even pattern of xylan substitution is critical for interaction with cellulose in plant cell walls. Nature Plants, 3 (11). pp. 859-865. doi:10.1038/s41477-017-0030-8

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Book Item

Ghaffari, Reza, Zhang, Fu, Iliescu, Daciana, Hines, Evor, Leeson, Mark S. and Napier, R. (2011) The analysis of plant's organic volatiles compounds with electronic nose and pattern recognition techniques. In: Qahwaji, Rami, 1972- and Green, Roger, 1951- and Hines, Evor, 1957-, (eds.) Applied signal and image processing : multidisciplinary advancements. Hershey, PA: IGI Global, pp. 115-126. ISBN 9781609604776

Conference Item

Jafarnejadsani, Hamidreza, Kim, Jongmin, Hovakimyan, Naira and Kulkarni, Vishwesh V. (2016) Load capacity improvements in transcriptional systems using discrete-time L1-adaptive control. In: 8th International Workshop on Bio-Design Automation, Newcastle-upon-Tyne, UK, 16-18 Aug 2016. Published in: Proceedings of 8th International Workshop on Bio-Design Automation pp. 75-76.

Lessire, R., Cahoon, E., Chapman, K., Dyer, J., Eastmond, Peter J. and Heinz, E. (2009) Highlights of recent progress in plant lipid research. In: 18th Biennial International Symposium on Plant Lipids (ISPL), Bordeaux, France, 20-25 Jul 2008. Published in: Plant Physiology and Biochemistry, Vol.47 (No.6). pp. 443-447. ISSN 0981-9428. doi:10.1016/j.plaphy.2009.02.010

Matsoukas, Ioannis G., Thomas, Brian and Massiah, Andrea J. (2005) Μοριακή και φυσιολογική ανάλυση της άνθισης. In: 22ο Πανελλήνιο Συνέδριο Ελληνικής Εταιρείας Επιστήµης Οπωροκηπευτικών, Πάτρα, Ἑλλάς-Greece, 19-21 October 2005 doi:10.1029/2004JC002566

Journal Item

Bruce, Gareth, Gu, Mei, Shi, Nongnong, Liu, Yule and Hong, Yiguo (2011) Influence of retinoblastoma-related gene silencing on the initiation of DNA replication by African cassava mosaic virus Rep in cells of mature leaves in Nicotiana benthamiana plants. Virology Journal, Vol.8 (No.1). p. 561. doi:10.1186/1743-422X-8-561

Costa, Liliana M. and Gutierrez-Marcos, José F. (2008) Retinoblastoma makes its mark on imprinting in plants. Plos Biology, Vol.6 (No.8). pp. 1631-1633. doi:10.1371/journal.pbio.0060212

Habershon, Scott and Baker, Lewis A. (2017) Photosynthetic pigment-protein complexes as highly-connected networks : implications for robust energy transport. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 473 (2201). doi:10.1098/rspa.2017.0112

Retzer, Katarzyna, Singh, Gaurav and Napier, R. (Richard) (2018) It starts with TIRs. Nature Plants, 4 (7). pp. 410-411. doi:10.1038/s41477-018-0196-8

Thesis or Dissertation

Abbott, Aaron (2010) The isolation of flowering time genes from lettuce to enable the manipulation of bolting time. PhD thesis, University of Warwick.

Adebola, Titilayo Adunola (2017) The regime complex for plant variety protection: revisiting TRIPS implementation in Nigeria. PhD thesis, University of Warwick.

Amnuaykan, Piyatida (2015) Environmental and genetic regulation of juvenility in Antirrhinum majus. PhD thesis, University of Warwick.

Appanah, Rowin (2017) Replisome-mediated homeostasis of DNA/RNA hybrids in eukaryotic genomes is critical for cell fates and chromatin stability. PhD thesis, University of Warwick.

Arifin, Khaizurin T. (2013) Creating an orthogonal signalling pathway in S. cerevisiae. PhD thesis, University of Warwick.

Armitage, Andrew D. (2013) Alternaria alternata leaf spot pathogens : genetics, evolutionary history and diagnostics. PhD thesis, University of Warwick.

Atkinson, Laura Denise (2010) Genetic characterisation of post harvest spoilage in lettuce. PhD thesis, University of Warwick.

Bailey, Mark (Researcher in life sciences) (2014) An investigation into the role of SUMO proteases OVERLY TOLERANT to SALT1 and -2 in salicylic acid mediated defense signalling in Arabidopsis thaliana : toward understanding the role of SUMOylation in SA signalling. PhD thesis, University of Warwick.

Barnes, Christopher James (2014) Characterizing environmental, temporal and spatial scaling of Rhizosphere fungi in bioenergy crops : and their role in belowground carbon cycling. PhD thesis, University of Warwick.

Baroncelli, Riccardo (2012) Colletotrichum acutatum sensu lato : from diversity study to genome analysis. PhD thesis, University of Warwick.

Barrington, Christopher (2013) Epigenetic responses to environmental stress in plants. PhD thesis, University of Warwick.

Bassham, Diane C. (1993) The proteolytic processing of organellar proteins. PhD thesis, University of Warwick.

Bateman, Perry James Dominic (2014) Nutrient translocation of offspring in plants. PhD thesis, University of Warwick.

Bennett, Malcolm J. (1989) Structure and expression of glutamine synthetase in root nodules of Phaseolus Vulgaris L. PhD thesis, University of Warwick.

Blair, G. Eric (1974) Protein synthesis in chloroplasts. PhD thesis, University of Warwick.

Burns, Caitlin A. (2014) Characterising the functional role of rhizosphere fungi in Miscanthus giganteus bioenergy cropping systems. PhD thesis, University of Warwick.

Burton, Frances (2016) Molecular basis of Serendipita indica mediated mutualism in plants. PhD thesis, University of Warwick.

Carroll, Charlotte Elizabeth Ella (2014) The importance of aquaporins in Arabidopsis thaliana germination and seedling establishment. PhD thesis, University of Warwick.

Carter, Anthony D. (2013) Cell-type specific comparative analysis of lateral root and nodule development at phenotypic and genomic levels. PhD thesis, University of Warwick.

Chappell, Lauren (2016) Characterisation of parsnip canker pathogens and identification of plant resistance. PhD thesis, University of Warwick.

Collins, Spencer (2016) The biology and ecology of Aleyrodes proletella, the Cabbage Whitefly; a pest of Brassica crops. PhD thesis, University of Warwick.

Cooke, Emma J. (2013) Transcriptional analysis of the interaction between botrytis cinerea and a host arabidopsis thaliana using high-throughput data. PhD thesis, University of Warwick.

Davies, Lawrence O. (2013) The effect of non-UV light on crop protection product degradation and soil microbial community structure and function. PhD thesis, University of Warwick.

Di Benedetto, Sara (2011) The function of BET11, a trans-Golgi SNARE protein of Arabidopsis thaliana. PhD thesis, University of Warwick.

Durrant, Oliver (2009) Structural investigation of the Arabidopsis thaliana circadian clock. PhD thesis, University of Warwick.

Dzimitrowicz, Natasha (2018) Investigating proteins that regulate the architecture of the plant Endoplasmic Reticulum. PhD thesis, University of Warwick.

Easterby-Smith, Sarah (2009) Cultivating commerce : connoisseurship, botany and the plant trade in London and Paris, c. 1760 – c. 1815. PhD thesis, University of Warwick.

Fairhead, Sebastian (2016) Translating genetics of oomycete resistance from Arabidopsis thaliana into Brassica production. PhD thesis, University of Warwick.

Foster, Lesley (2016) Alternative splicing in plant defence. PhD thesis, University of Warwick.

Gacek, K. (Katarzyna) (2013) Cell-cell communication in early developing seeds of Arabidopsis thaliana. PhD thesis, University of Warwick.

Gherli, Hussein (2017) Nitrogen use efficiency in Brassica napus. PhD thesis, University of Warwick.

Grundy, Jack (2016) Control of environmental stress responses by the circadian clock and abscisic acid. PhD thesis, University of Warwick.

Gutaker, Rafał M. (2014) The genetic variation of cultivated flax (Linum usitatissimum L.) and the role of its wild ancestor (Linum bienne Mill.) in its evolution. PhD thesis, University of Warwick.

Hale, Christopher Charles (2017) Characterisation of plant (Brassica spp.) and microbial rhizosphere functions. PhD thesis, University of Warwick.

Harrison, Peter J. (2014) Biochemical investigations of the carotenoid cleavage dioxygenase enzyme family. PhD thesis, University of Warwick.

Harvey, Sarah (2013) The downy mildew effector HaRxL21 suppresses immune responses of Arabidopsis thaliana. PhD thesis, University of Warwick.

Hendry, Ruth Juliet (1995) Spatial modelling in plant ecology. PhD thesis, University of Warwick.

Hickman, Richard J. (2012) Transcriptional regulatory codes underlying Arabidopsis stress responses. PhD thesis, University of Warwick.

Hicks, Christine (2016) Transcriptional analysis of salt shock in Brassica oleracea. PhD thesis, University of Warwick.

Huang, Ziyue (2013) Characterisation of dormancy cycling responses to environmental signals in contrasting Arabidopsis thaliana ecotypes. PhD thesis, University of Warwick.

Hughes, Linda Karen (2009) A bioinformatic analysis of genes involved in stress responses in Arabidopsis thaliana. PhD thesis, University of Warwick.

Irvine, Michael Alastair (2014) Pattern formation and persistence in spatial plant ecology. PhD thesis, University of Warwick.

Issa, Reem Adnan (2010) Identification of glucosinolate profile in Brassica oleracea for quantitative trait locus mapping. PhD thesis, University of Warwick.

Jironkin, Aleksey (2013) Computational and experimental analysis of plant promoters : identifying functional elements. PhD thesis, University of Warwick.

Kancy, Stephanie Jayne Thorley (2017) The role of histone acetyltransferases in plant immunity. PhD thesis, University of Warwick.

Kerr, Gary W. (2013) The role of protein phosphatase PP2ACdc55 during meiosis in Saccharomyces cerevisiae. PhD thesis, University of Warwick.

Kiddle, Steven J. (2012) Using systems biology approaches to elucidate gene regulatory networks controlling the plant defence response. PhD thesis, University of Warwick.

Kirkham, Amy R. (2009) Global perspectives on the molecular ecology of photosynthetic picoeukaryotes. PhD thesis, University of Warwick.

Lagator, Mato (2012) Experimental evolution of herbicide resistance in chlamydomonas reinhardtii. PhD thesis, University of Warwick.

Law, Philip John (2013) Quantitative analysis of time-series microarray data, with application to investigating responses to environmental stresses in arabidopsis. PhD thesis, University of Warwick.

Lewis, Laura Ann (2012) Investigating the influence of phytopathogenic effectors upon host transcription. PhD thesis, University of Warwick.

Lewis, Mary C., Ph.D. (2011) The development of assays to determine the effect of environmental factors on the viability of Plasmodiophora brassicae resting spores. PhD thesis, University of Warwick.

Li, Chunyang (2011) Functional analysis of Arabidopsis Flowering locus T RNA and protein. PhD thesis, University of Warwick.

Li, Michael Kok Keng (2009) Quantitative analysis of chloroplast protein targeting. PhD thesis, University of Warwick.

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Dataset

Habershon, Scott and Baker, Lewis A. Data for Photosynthetic pigment-protein complexes as highly-connected networks : implications for robust energy transport. [Dataset]