Journal Article

Achtman, Mark. (2011) A broad brush, global overview of bacterial sexuality. PLoS Genetics, Volume 7 (Number 8). Article number e1002255. ISSN 1553-7390

Achtman, Mark, Wain, John, Weill, François-Xavier, Nair, Satheesh, Zhou, Zhemin, Sangal, Vartul, Krauland, Mary G., Hale, James L., Harbottle, Heather, Uesbeck, Alexandra, Dougan, Gordon, Harrison, Lee H. and Brisse, Sylvain. (2012) Multilocus sequence typing as a replacement for serotyping in salmonella enterica. PLoS Pathogens, Volume 8 (Number 6). Article number e1002776. ISSN 1553-7374

Agoti, Charles N., Mwihuri, Alexander G., Sande, Charles J., Onyango, Clayton O., Medley, Graham, Cane, Patricia and Nokes, D. James. (2012) Genetic relatedness of infecting and reinfecting respiratory syncytial virus strains identified in a birth cohort from rural Kenya. Journal of Infectious Diseases, Volume 206 (Number 10). pp. 1532-1541. ISSN 0022-1899

STREAM Consortium (Including: Alam, Mohammad T., Merlo, Maria E., Hodgson, D. A. (David A.), Wellington, E. M. H. (Elizabeth M. H.), 1954-, Takano, Eriko and Breitling, Rainer). (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (No.202). p. 202. ISSN 1471-2164

Alderwick, Luke J., Lloyd, Georgina S., Lloyd, Adrian, Lovering, Andrew L., Eggeling, L. and Besra, Gurdyal S.. (2011) Biochemical characterization of the Mycobacterium tuberculosis phosphoribosyl-1-pyrophosphate synthetase. Glycobiology, Vol.21 (No.4). pp. 410-425. ISSN 1460-2423

Aletrari, Mina-Olga , McKibbin, Craig, Williams, Helen, Pawar, Vidya, Pietroni, Paola, Lord, Mike (J. Mike), Flitsch, Sabine L., Whitehead, Roger C., Swanton, Eileithyia, High, Stephen and Spooner, Robert A. . (2011) Eeyarestatin 1 interferes with both retrograde and anterograde intracellular trafficking pathways. PLoS One, Vol.6 (No.7). e22713. ISSN 1932-6203

Ali, Adnan, Somfai, Ellák and Grosskinsky, Stefan. (2012) Reproduction-time statistics and segregation patterns in growing populations. Physical Review E, Vol.85 (No.2). Article no. 021923. ISSN 1063-651X

Alix, Karine, Joets, Johann, Ryder, Carol D., Moore, Jonathan D., Barker, Guy C., Bailey, John P., King , Graham J. and Heslop-Harrison, J. (John). (2008) The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation. Plant Journal, Vol.56 (No.6). pp. 1030-1044. ISSN 0960-7412

Amessou, Mohamed, Fradagrada, Alexandre, Falguières, Thomas, Lord, Mike (J. Mike), Smith, Daniel C., Roberts, Lynne M. , Lamaze, Christophe and Johannes, Ludger. (2007) Syntaxin 16 and syntaxin 5 are required for efficient retrograde transport of several exogenous and endogenous cargo proteins. Journal of Cell Science, Vol.12 (No.8). pp. 1457-1468. ISSN 0021-9533

Amos, Gregory C. A., Hawkey, P. M. (Peter M.), Gaze, William H. and Wellington, E. M. H. (Elizabeth M. H.), 1954-. (2014) Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment. Journal of Antimicrobial Chemotherapy, Volume 69 (Number 7). pp. 1785-1791. ISSN 0305-7453

Babataheri, Avin, Roper, Marcus, Fermigier, Marc and Du Roure, Olivia. (2011) Tethered fleximags as artificial cilia. Journal of Fluid Mechanics, Vol.678 . pp. 5-13. ISSN 0022-1120

Baldwin, Adam, Loughlin, Michael, Dr., Caubilla-Barron, Juncal, Kucerova, Eva, Manning, Georgina, Dowson, Christopher G. and Forsythe, S. J. (Steve J.). (2009) Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable clonal structures with clinical significance which do not correlate with biotypes. BMC Microbiology, Vol.9 (Article 223). ISSN 1471-2180

Baltrus, David A., Nishimura, Marc T., Dougherty, Kevin M., Biswas, Surojit, Mukhtar, M. Shahid, Vicente, Joana G., Holub, E. B. and Dangl, J. L. (Jeffery L.). (2012) The molecular basis of host specialization in bean pathovars of Pseudomonas syringae. Molecular Plant-Microbe Interactions, Vol.25 (No.7). pp. 877-888. ISSN 0894-0282

Bathe, Stephan and Hausner, Martina. (2006) Design and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities. BMC Microbiology, Vol.6 (No.54). ISSN 1471-2180

Batson, Sarah, Rea, Dean, Fülöp, Vilmos and Roper, David I.. (2010) Crystallization and preliminary X-ray analysis of a D-alanyl-D-alanine ligase (EcDdlB) from Escherichia coli. Journal of Experimental Psychology: Human Perception and Performance, Vol.66 (No.4). pp. 405-408. ISSN 0096-1523

Berg, Hugo van den, 1968-, Molina-Paris, Carmen and Sewell, Andrew K.. (2011) Specific T-cell activation in an unspecific T-cell repertoire. Science Progress, Vol.94 (No.3). pp. 245-264. ISSN 0036-8504

Boden, Rich, Cleland, David, Green, Peter N., Katayama, Yoko, Uchino, Yoshihito, Murrell, J. C. (J. Colin) and Kelly, Donovan P., 1940-. (2011) Phylogenetic assessment of culture collection strains of Thiobacillus thioparus, and definitive 16S rRNA gene sequences for T. thioparus, T. denitrificans, and Halothiobacillus neapolitanus. Archives of Microbiology, Vol.194 (No.3). pp. 187-195. ISSN 0302-8933

Boden, Rich, Thomas, Elizabeth, Savani, Parita, Kelly, Donovan P. and Woodbine, Ann P. . (2008) Novel methylotrophic bacteria isolated from the River Thames (London, UK). Environmental Microbiology , Vol.10 (No.12). pp. 3225-3236. ISSN 1462-2912

Brettin, Thomas S. (Thomas Scott), Altherr, Michael R., Du, Ying, Mason, Roxie M., Friedrich, Alexandra, Potter, Laura, Langford, Chris, Keller, Thomas J., Jens, Jason, Howie, Heather, Weyand, Nathan J., Clary, Susan, Prichard, Kimberley, Wachocki, Susi, Sodergren, Erica, Dillard, Joseph P., Dillard, George, So, Magdalene and Grove Arvidson , Cindy. (2005) Expression capable library for studies of Neisseria gonorrhoeae, version 1.0. BMC Microbiology, Vol.5 (No.50). ISSN 1471-2180

Bryan, Samantha J., Burroughs, Nigel John, Evered, Carol, Sacharz, Joanna, Nenninger, Anja, Mullineaux, Conrad W. and Spence, Edward M.. (2011) Loss of the SPHF homologue Slr1768 leads to a catastrophic failure in the maintenance of thylakoid membranes in synechocystis sp. PCC 6803. PLoS One, Vol.6 (No.5). e19625. ISSN 1932-6203

Byrne-Bailey, K. G., Gaze, William H., Kay, Paul, Boxall, Alistair B.A. , Hawkey, Peter M. and Wellington, E. M. H. (Elizabeth M. H.), 1954-. (2009) Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom. Antimicrobial Agents and Chemotherapy, Vol.53 (No.2). pp. 696-702. ISSN 0066-4804

Byrne-Bailey, K. G., Gaze, William H., Zhang, L., Kay, Paul, Boxall, Alistair B.A. , Hawkey, Peter M. and Wellington, E. M. H. (Elizabeth M. H.), 1954-. (2011) Integron prevalence and diversity in manured soil. Applied and Environmental Microbiology, Vol.77 (No.2). pp. 684-687. ISSN 0099-2240

Calvo-Bado, Leo A., Green, Laura E., Medley, Graham, Ul-Hassan, Atiya, Grogono-Thomas, R., Buller, Nicky B., Kaler, Jasmeet, Russell, Claire L., Kennan, Ruth M., Rood, Julian I. and Wellington, E. M. H. (Elizabeth M. H.), 1954-. (2010) Detection and diversity of a putative novel heterogeneous polymorphic proline-glycine repeat (Pgr) protein in the footrot pathogen Dichelobacter nodosus. Veterinary Microbiology, Vol.147 (No.3-4). pp. 358-366. ISSN 0378-1135

Carbonero, Franck, Oakley, Brian B. and Purdy, Kevin J.. (2014) Metabolic flexibility as a major predictor of spatial distribution in microbial communities. PLoS One, Volume 9 (Number 1). Article number e85105. ISSN 1932-6203

Castro, Thiago L. P., Seyffert, Nubia, Ramos, Rommel T. J., Barbosa, Silvanira, Carvalho, Rodrigo D. O., Pinto, Anne Cybelle, Carneiro, Adriana Ribeiro, Silva, Wanderson Marques, Pacheco, Luis G. C., Downson, Christopher G., Schneider, Maria P. C., Miyoshi, Anderson, Azevedo, V. (Vasco) and Silva, Artur. (2013) Ion torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method. Microbial Biotechnology, Volume 6 (Number 2). pp. 168-177. ISSN 1751-7907

Challis, Gregory L.. (2008) Mining microbial genomes for new natural products and biosynthetic pathways. Microbiology, Vol.154 (No.6). pp. 1555-1569. ISSN 1350-0872

Chamberlain, Kerry L., Marshall, Richard S., Jolliffe, Nicholas A., Frigerio, Lorenzo, Ceriotti, Aldo, Lord, Mike (J. Mike) and Roberts, Lynne M. . (2008) Ricin B chain targeted to the endoplasmic reticulum of tobacco protoplasts is degraded by a CDC48- and vacuole-independent mechanism. Journal of Biological Chemistry, Vol.283 (No.48). pp. 33276-33286. ISSN 0021-9258

Chen, Yin, McAleer, Kathryn L. and Murrell, J. C. (J. Colin). (2010) Monomethylamine as a nitrogen source for a nonmethylotrophic bacterium, Agrobacterium tumefaciens. Applied and Environmental Microbiology, Vol.76 (No.12). pp. 4102-4104. ISSN 0099-2240

Chen, Yin, Patel, Nisha A., Crombie, Andrew, Scrivens, James H. and Murrell, J. C. (J. Colin). (2011) Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. Proceedings of the National Academy of Sciences, Vol.108 (No.43). pp. 17791-17796. ISSN 0027-8424

Clarkson, John P., Staveley, John, Phelps, Kath, Young, Caroline, 1961- and Whipps, J. M.. (2003) Ascospore release and survival in Sclerotinia sclerotiorum. Mycological Research, Vol.10 (No.2). pp. 213-222. ISSN 0953-7562

Clokie, Martha R. J. , Millard, Andrew D., Mehta, Jaytry Y. and Mann, Nicholas H.. (2006) Virus isolation studies suggest short-term variations in abundance in natural cyanophage populations of the Indian Ocean. Journal of the Marine Biological Association of the United Kingdom, Vol.86 (No.3). pp. 499-505. ISSN 0025-3154

Cosgriff, Sarah, Chintakayala, Kiran, Chim, Ya Tsz A., Chen, Xinyong, Allen, Stephanie (Researcher in Pharmacy), Lovering, Andrew L. and Grainger, David C.. (2010) Dimerization and DNA-dependent aggregation of the Escherichia coli nucleoid protein and chaperone CbpA. Molecular Microbiology, Volume 77 (Number 5). pp. 1289-1300. ISSN 0950-382X

Courtenay, Orin, Reilly, L. A., Keeling, Matthew James, Sweeney, F. P., Wellington, E. M. H. (Elizabeth M. H.), 1954-, Macdonald, David W. (David Whyte), Delahay, Richard J., Wilson, G. J. (Gavin J.) and Cheeseman, C. L.. (2007) Performance of an environmental test to detect Mycobacterium bovis infection in badger social groups. Veterinary Record, The, Vol.161 . pp. 817-818. ISSN 0042-4900

Cox, M. J. and Medley, Graham. (2003) Serological survey of anti-group A rotavirus IgM in UK adults. Epidemiology and Infection, Vol.13 (No.1). pp. 719-726. ISSN 0950-2688

Cox, Michael J., Schäfer, Hendrik, Nightingale, Phillip D., McDonald, Ian R. and Murrell, J. Colin. (2012) Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters. FEMS Microbiology Letters, Vol.334 (No.2). pp. 111-118. ISSN 03781097

Crispin, Max, Chang, Veronica T., Harvey, David J., Dwek, Raymond A., Evans, Edward J., Stuart, David I., Jones, E. Yvonne, Lord, Mike (J. Mike), Spooner, Robert A. and Davis, Simon J.. (2009) A human embryonic kidney 293T cell line mutated at the Golgi -mannosidase II locus. Journal of Biological Chemistry . ISSN 0021-9258

Cunliffe, Michael, Whiteley, Andrew S., Newbold, Lindsay, Oliver, Anna, Schäfer, Hendrik and Murrell, J. C. (J. Colin). (2009) Comparison of bacterioneuston and bacterioplankton dynamics during a phytoplankton bloom in a fjord mesocosm. Applied and Environmental Microbiology, Vol.75 (No.22). pp. 7173-7181. ISSN 0099-2240

Didelot, Xavier, Bowden, Rory, Street, Teresa, Golubchik, Tanya, Spencer, Chris (Researcher in Genetics and Genomics), McVean, Gil, Sangal, Vartul, Anjum, Muna F., Achtman, Mark, Falush, Daniel and Donnelly, Peter, 1959-. (2011) Recombination and population structure in salmonella enterica. PLoS Genetics, Volume 7 (Number 7). Article number e1002191. ISSN 1553-7390

Didelot, Xavier, Urwin, Rachel, Maiden, Martin C. J. and Falush, Daniel. (2009) Genealogical typing of Neisseria meningitidis. Microbiology, Vol.15 (No.10). pp. 3176-3186. ISSN 1350-0872

Diviney, Sinéad, Tuplin, Andrew, Struthers, Madeleine, Armstrong, Victoria, Elliott, Richard M., Simmonds, Peter and Evans, D. J. (David J.). (2008) A hepatitis C virus cis-acting replication element forms a long-range RNA-RNA interaction with upstream RNA sequences in NS5B. Journal of Virology, Vol.82 (No.18). pp. 9008-9022. ISSN 0022-538X

Drevinek, Pavel, Baldwin, Adam, Dowson, Christopher G. and Mahenthiralingam, Eshwar. (2008) Diversity of the parB and repA genes of the Burkholderia cepacia complex and their utility for rapid identification of Burkholderia cenocepacia. BMC Microbiology, Vol.8 (No.44). ISSN 1471-2180

Drummond, Sheona P., Hildyard, John, Firczuk, Helena, Reamtong, Onrapak, Li, Ning, Kannambath, Shichina, Claydon, Amy J., Beynon, R. J. (Robert J.), Eyers, Claire E. and McCarthy, John E. G.. (2011) Diauxic shift-dependent relocalization of decapping activators Dhh1 and Pat1 to polysomal complexes. Nucleic Acids Research, Vol.39 (No.17). pp. 7764-7774. ISSN 1362-4962

Dutta, Ritaban, Hines, Evor, 1957-, Gardner, J. W. (Julian W.), 1958- and Boilot, Pascal. (2002) Bacteria classification using Cyranose 320 electronic nose. BioMedical Engineering OnLine, Vol.1 (No.4). ISSN 1475-925X

. (2013) Esperanto for histones : CENP-A, not CenH3, is the centromeric histone H3 variant. Chromosome Research, Volume 21 (Number 2). pp. 101-106. ISSN 0967-3849

Elashry, Abdelnaser, Okumoto, Sakiko, Siddique, Shahid, Koch, Wolfgang, Kreil, David and Bohlmann, Holger. (2013) The AAP gene family for amino acid permeases contributes to development of the cyst nematode Heterodera schachtii in roots of Arabidopsis. Plant Physiology and Biochemistry, Volume 70 . pp. 379-386. ISSN 0981-9428

Elliott, Charles M., Stinner, Björn and Venkataraman, Chandrasekhar. (2012) Modelling cell motility and chemotaxis with evolving surface finite elements. Journal of The Royal Society Interface, Volume 9 (Number 76). pp. 3027-3044. ISSN 1742-5689

España, Mingrelia, Rasche, Frank, Kandeler, Ellen, Brune, Thomas, Rodriguez, Belkys, Bending, G. D. (Gary D.) and Cadisch, G. (Georg). (2011) Assessing the effect of organic residue quality on active decomposing fungi in a tropical Vertisol using 15N-DNA stable isotope probing. Fungal Ecology, Vol.4 (No.1). pp. 115-119. ISSN 1754-5048

Frankel, Gad, Shaw, Robert K., Pink, David, Berger, Cedric N. and Hand, Paul. (2009) Fresh produce as a potential vector for bacterial human pathogens. Microbial Biotechnology, Vol.2 (No.6). pp. 595-597. ISSN 1751-7907

Freeman, Zoë N., Dorus, Steve and Waterfield, Nicholas R.. (2013) The KdpD/KdpE two-component system : integrating K+ homeostasis and virulence. PLoS Pathogens, Volume 9 (Number 3). Article number e1003201. ISSN 1553-7374

Gaze, William H., O'Neill, Colette, Wellington, E. M. H. (Elizabeth M. H.), 1954- and Hawkey, Peter M.. (2008) Antibiotic resistance in the environment, with particular reference to MRSA. Advances in Applied Microbiology, Vol.63 . pp. 249-280. ISSN 0065-2164

. (2014) Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors. Molecular Cell, Volume 53 (Number 3). pp. 369-379. ISSN 1097-2765 (In Press)

Graham, Neil S., Broadley, Martin R., Hammond, John P., White, Philip J. and May, Sean T.. (2007) Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection. BMC Genomics, Vol.8 (No.344). ISSN 1471-2164

Großkopf, Tobias and Soyer, Orkun S.. (2014) Synthetic microbial communities. Current Opinion in Microbiology, Volume 18 . pp. 72-77. ISSN 1369-5274

Guetzoyan, Lucie J., Spooner, Robert A. , Lord, Mike (J. Mike), Roberts, Lynne M. and Clarkson, Guy J.. (2010) Simple oxidation of pyrimidinylhydrazones to triazolopyrimidines and their inhibition of Shiga toxin trafficking. European Journal of Medicinal Chemistry, Vol.45 (No.1). pp. 275-283. ISSN 0223-5234

Gómez-Pereira, Paola R., Hartmann, Manuela, Grob, Carolina, Tarran, Glen A. , Martin, Adrian P., Fuchs, Bernhard M., Scanlan, David J. and Zubkov, Mikhail V. . (2013) Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre. The ISME Journal, Vol.7 (No.3). pp. 603-614. ISSN 1751-7362

Hadlington, Jane L., Santoro, Aniello, Nuttall, James, Denecke, J. (Jurgen), Ma, Julian K.-C., Vitale, A. (Alessandro) and Frigerio, Lorenzo. (2003) The c-terminal extension of a hybrid immunoglobulin A/G heavy chain is responsible for its Golgi-mediated sorting to the vacuole. Molecular Biology of the Cell, Vol.14 (No.6). pp. 2592-2602. ISSN 1059-1524

Haering, Christian H. , Farcas, Ana-Maria , Arumugam, Prakash , Metson, Jean and Nasmyth, Kim . (2008) The cohesin ring concatenates sister DNA molecules. Nature, Vol.454 . pp. 297-301. ISSN 0028-0836

Halachev, Mihail R., Loman, Nicholas J. and Pallen, Mark J.. (2011) Calculating orthologs in bacteria and archaea : a divide and conquer approach. PLoS One, Volume 6 (Number 12). Article number e28388. ISSN 1932-6203

Hall, Sharon A., Allen, Rebecca L., Baumber, Rachel E., Baxter, Laura A., Fisher, Kate, Bittner-Eddy , Peter D., Rose, Laura E., Holub, E. B. and Beynon, Jim, 1956-. (2009) Maintenance of genetic variation in plants and pathogens involves complex networks of gene-for-gene interactions. Molecular Plant Pathology, Vol.10 (No.4). pp. 449-457. ISSN 1464-6722

Hammond, John P., Broadley, Martin R., Craigon, David J., Higgins, Janet, Emmerson, Zoe F., Townsend, Henrik J., White, Philip J. and May , Sean T.. (2005) Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species. Plant Methods, Vol.1 (No.10). ISSN 1746-4811

Hancock, Penelope A. and Godfray, H. Charles J.. (2012) Modelling the spread of Wolbachia in spatially heterogeneous environments. Journal of The Royal Society Interface, Vol.9 (No.76). pp. 3045-3054. ISSN 1742-5689

Hardy, K. (Katherine), Price, Charlotte L, Szczepura, Ala, Gossain, Savita, Davies , Ruth, Stallard, Nigel, Shabir, Sahida, McMurray, Claire, Bradbury, Andrew and Hawkey, Peter M.. (2009) Reduction in the rate of methicillin-resistant Staphylococcus aureus acquisition in surgical wards by rapid screening for colonization : a prospective, cross-over study. Clinical Microbiology and Infection, Vol.16 (No.4). pp. 333-339. ISSN 1198-743X

Harrison, Andrew B., Binder, Hans, Buhot, Arnaud , Burden, Conrad John, Carlon, Enrico, Gibas, Cynthia, Gamble, Lara J., Halperin, Avraham, Hooyberghs, Jef, Kreil, David, Levicky, Rastislav, Noble, Peter A., Ott, Albrecht, Pettitt, B. Montgomery, Tautz, Diethard and Pozhitkov, Alexander E.. (2013) Physico-chemical foundations underpinning microarray and next-generation sequencing experiments. Nucleic Acids Research, Volume 41 (Number 5). pp. 2779-2796. ISSN 0305-1048

Heather, Zoe, Holden, Matthew T. G., Steward, Karen F., Parkhill, Julian, Song, Lijiang, Challis, Gregory L., Robinson, C. (Carl), Davis-Poynter, Nicholas and Waller, Andrew S.. (2008) A novel streptococcal integrative conjugative element involved in iron acquisition. Molecular Microbiology, Volume 70 (Number 5). pp. 1274-1292. ISSN 0950-382X

Heneghan, Mary N., Porta, Claudine, Zhang, Cunjin, Burton, Kerry S., Challen, Michael P., Bailey, Andy M. and Foster, Gary D. . (2009) Characterization of serine proteinase expression in agaricus bisporus and coprinopsis cinerea by using green fluorescent protein and the A. bisporus SPR1 Promoter. Applied and Environmental Microbiology, Vol.75 (No.3). pp. 792-801. ISSN 0099-2240

Hill, Steven M., Neve, Richard M., Bayani, Nora, Kuo, Wen-Lin, Ziyad, Safiyyah, Spellman, Paul T., Gray, Joe W. and Mukherjee, Sach. (2012) Integrating biological knowledge into variable selection : an empirical Bayes approach with an application in cancer biology. BMC Bioinformatics, Volume 13 (Number 1). Article no. 94. ISSN 1471-2105

Hilton, Sally, Bennett, Amanda J., Keane, Gary, Bending, G. D. (Gary D.), Chandler, David, Stobart, Ron and Mills, Peter R. (Peter Richard). (2013) Impact of shortened crop rotation of oilseed rape on soil and rhizosphere microbial diversity in relation to yield decline. PLoS One, Volume 8 (Number 4). e59859. ISSN 1932-6203

. (2009) Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. PLOS One, Vol.4 (No.7). ISSN 1932-6203

Holmes, Antony, Kalvala, Sara and Whitworth, David E.. (2010) Spatial simulations of myxobacterial development. PLoS Computational Biology, Vol.6 (No.2). e1000686. ISSN 1553-734X

Jadhav, Vaibhav, Hackl, Matthias, Druz, Aliaksandr, Shridhar, Smriti, Chung, Cheng-Yu, Heffner, Kelley M., Kreil, David, Betenbaugh, Mike, Shiloach, Joseph, Barron, Niall, Grillari, Johannes and Borth, Nicole. (2013) CHO microRNA engineering is growing up : recent successes and future challenges. Biotechnology Advances, Volume 31 (Number 8). pp. 1501-1513. ISSN 0734-9750

Jones, C. W. (Christopher W.), Wang, J. C., Briehl, R. W. and Taylor, Matthew S.. (2005) Measuring forces between protein fibers by microscopy. Biophysical Journal, Vol.88 (No.4). pp. 2433-2441. ISSN 0006-3495

Karpinets, Tatiana V. , Greenwood , Duncan J., Sams, Carl E. and Ammons, John T.. (2006) RNA:protein ratio of the unicellular organism as a characteristic of phosphorous and nitrogen stoichiometry and of the cellular requirement of ribosomes for protein synthesis. BMC Biology, Vol.4 (No.30). ISSN 1741-7007

Kaverina, Irina and Straube, Anne. (2011) Regulation of cell migration by dynamic microtubules. Seminars in Cell & Developmental Biology, Volume 22 (Number 9). pp. 968-974. ISSN 1084-9521

Kay, Gemma L., Sergeant, Martin J., Giuffra, Valentina, Bandiera, Pasquale, Milanese, Marco, Bramanti, Barbara, Bianucci, Raffaella and Pallen, Mark J.. (2014) Recovery of a medieval Brucella melitensis genome using shotgun metagenomics. mBio, Volume 5 (Number 4). Article number e01337-14. ISSN 2150-7511

Kemen, Eric, Gardiner, Anastasia, Schultz-Larsen, Torsten, Kemen, Ariane C., Balmuth, Alexi L., Robert-Seilaniantz, Alexandre, Bailey, Kate, Holub, E. B., Studholme, David J., MacLean, Daniel and Jones, Jonathan D.. (2011) Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana. PLoS Biology, Vol.9 (No.7). Article No. e1001094 . ISSN 1545-7885

Kulick, Stefan, Moccia, Claudia, Didelot, Xavier, Falush, Daniel, Kraft, Christian and Suerbaum, Sebastian. (2008) Mosaic DNA imports with interspersions of recipient sequence after natural transformation of Helicobacter pylori. PLOS One, Vol.3 (No.11). ISSN 1932-6203

Ladds, Graham, Zervou, Sevasti I., Vatish, Manu, Thornton, Steven and Davey, John. (2009) Regulators of G protein signalling proteins in the human myometrium. European Journal of Pharmacology, Vol.610 (No.1-3). pp. 23-28. ISSN 0014-2999

Laskaris, Paris, Sekine, Takuya and Wellington, E. M. H. (Elizabeth M. H.), 1954-. (2012) Diversity analysis of Streptomycetes and associated phosphotranspherase genes in soil. PLoS ONE, Vol.7 (No.4). e35756. ISSN 1932-6203

Latifi-Navid, Saeid, Ghorashi, Seyed Ali, Siavoshi, Farideh, Linz, Bodo, Massarrat, Sadegh, Khegay, Tanya, Salmanian, Ali-Hatef, Shayesteh, Ali Akbar, Masoodi, Mohsen, Ghanadi, Koroush, Ganji, Azita, Suerbaum, Sebastian, Achtman, Mark, Malekzadeh, Reza and Falush, Daniel. (2010) Ethnic and geographic differentiation of helicobacter pylori within Iran. PLoS One, Volume 5 (Number 3). Article number e9645. ISSN 1932-6203

Lewsey, Mathew, Surette, Monique, Robertson, Fiona C. , Ziebell, Heiko, Choi, Sun Hee , Ryu, Ki Hyun , Canto, Tomas, Palukaitis, Peter, Payne, Tina, Walsh, John A. and Carr, John P.. (2009) The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant - Microbe Interactions, Vol.22 (No.6). pp. 642-654. ISSN 0894-0282

Li, Shuyu, Spooner, Robert A. , Hampton, Randolph Y., Lord, Mike (J. Mike) and Roberts, Lynne M. . (2012) Cytosolic entry of Shiga-like toxin A chain from the yeast endoplasmic reticulum requires catalytically active Hrd1p. PLoS ONE, Vol.7 (No.7). e41119. ISSN 1932-6203

Lidbury, Ian, Murrell, J. C. (J. Colin) and Chen, Yin. (2014) Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria. Proceedings of the National Academy of Sciences of the United States of America, Volume 111 (Number 7). pp. 2710-2715. ISSN 0027-8424

Links, Matthew G., Holub, E. B., Jiang, Rays H. Y., Sharpe, Andrew G., Hegedus, Dwayne, Beynon, Elena, Sillito, Dean, Clarke, Wayne E., Uzuhashi, Shihomi and Borhan, Mohammad Hossein. (2011) De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes. BMC Genomics, Vol.12 (No.1). Article No. 503. ISSN 1471-2164

Lysenko, Elena S., Clarke, Thomas B., Shchepetov, Mikhail, Ratner, Adam J., Roper, David I., Dowson, Christopher G. and Weiser, Jeffrey N.. (2007) Nod1 signaling overcomes resistance of S. pneumoniae to opsonophagocytic killing. PL o S Pathogens , Vol.3 (No.8). pp. 1073-1081. ISSN 1553-7366

Lythgoe, Katrina A., Pellis, Lorenzo and Fraser, Christophe. (2013) Is HIV short-sighted? Insights from a multistrain nested model. Evolution, Volume 67 (Number 10). pp. 2769-2782. ISSN 0014-3820

Mahenthiralingam, Eshwar, Baldwin, Adam, Drevinek, Pavel, Vanlaere, Elke, Vandamme, Peter, LiPuma, John J. and Dowson, Christopher G.. (2006) Multilocus sequence typing breathes life into a microbial metagenome. PLoS One, Vol.1 (No.1). ISSN 1932-6203

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den Bakker, Henk C., Didelot, Xavier, Fortes, Esther D, Nightingale, Kendra K and Wiedmann, Martin. (2008) Lineage specific recombination rates and microevolution in Listeria monocytogenes. BMC Evolutionary Biology, Vol. 8 (No. 27). ISSN 1471-2148

van der Ploeg, René, Mäder, Ulrike, Homuth, Georg, Schaffer, Marc, Denham, Emma, Monteferrante, Carmine G., Miethke, Marcus, Marahiel, Mohamed A., Harwood, Colin R., Winter, Theresa, Hecker, Michael, Antelmann, Haike and van Dijl, Jan Maarten. (2011) Environmental salinity determines the specificity and need for tat-dependent secretion of the YwbN protein in bacillus subtilis. PLoS One, Volume 6 (Number 3). Article number e18140. ISSN 1932-6203

Özkanca, R., Saribiyik, F., Isik, K., Sahin, N., Kariptas, E. and Flint, K. P.. (2007) Resuscitation and quantification of stressed Escherichia coli K12 NCTC8797 in water samples. Microbiological Research, Vol.16 (No.2). pp. 212-220. ISSN 0944-5013

Conference Item

Langenkämper, Daniel, Kölling, Jan, Abouna, Sylvie, Khan, Michael, Niehaus, Karsten and Nattkemper, Tim W. (2011) TICAL - a web-tool for multivariate image clustering and data topology preserving visualization. In: MIAAB 2011 (Microscopic Image Analysis with Applications in Biology), Heidelberg, Germany, 2 Sep 2011. Published in: Proceedings of the 2011 Microscopic Image Analysis with Applications in Biology pp. 1-5.

Rossello, M. R., Griffiths, Nathan, Kalvala, Sara, Wellington, E. M. H. (Elizabeth M. H.), 1954- and Gaze, William H. (2009) Networking strategies in streptomyces coelicolor. In: 2nd International Conference on Bioinformatics and Systems Biology (BSB 2009), Leipzig, Germany, 23-25 March 2009 (Unpublished)

Submitted Journal Article

Shahram, Masoud, Nicholas, Robin, Wood, Ann P. and Kelly, Donovan P. (2009) Further evidence to justify reassignment of Mycoplasma mycoides subspecies mycoides Large Colony type to Mycoplasma mycoides subspecies capri. Systematic and Applied Microbiology . ISSN 0723-2020

Thesis or Dissertation

Abbasi, Sophia Y. (1998) A molecular genetic investigation into 2-methyl-3-amyl-6-methoxyprodigiosene (prodigiosin) biosynthesis in Serratia marcescens. PhD thesis, University of Warwick.

Abrahams, Katherine Anne (2011) The enzymology of Streptococcus pneumoniae peptidoglycan polymerisation. PhD thesis, University of Warwick.

Albiniak, A. M. (2012) Characterization and exploitation of inner membrane proteins in Escherichia coli. PhD thesis, University of Warwick.

Alford, Justine E. (2013) The interaction of HIV with cellular trafficking pathways. PhD thesis, University of Warwick.

Alkhalaf, Lona M. (2013) Structure, function and substrate tolerance of TxtC. PhD thesis, University of Warwick.

Amos, Gregory C. A. (2013) Environmental reservoirs of antibiotic resistance. PhD thesis, University of Warwick.

Arslanoglu, Alper (1999) Studies of the adenovirus 5 L1 gene aimed at developing L1 gene deficiencies for use in gene therapy vectors. PhD thesis, University of Warwick.

Ashraf, William (1990) The genetics and biochemistry of a propane-utilizing "Rhodococcus rhodochrous". PhD thesis, University of Warwick.

Baglieri, J. (2012) Assembly and mechanism of bacterial twin-arginine translocation systems. PhD thesis, University of Warwick.

Barnett, James Paul (2009) Organisation and mechanism of bacterial twin arginine translocases. PhD thesis, University of Warwick.

Barona Gómez, Francisco (2003) Functional and structural genomics of amino acid metabolism in Streptomyces coelicolor. PhD thesis, University of Warwick.

Bateman, Colin Neil (2009) Investigating gene induction in Listeria monocytogenes during growth in complex media or tissue culture. PhD thesis, University of Warwick.

Bicz, Joanna (2013) Investigations of siderophore and tetronic acid biosynthesis in streptomyces scabies 87.22. PhD thesis, University of Warwick.

Bloye, Stephen A. (1992) Responses of unicellular cyanobacteria to changes in their carbon regime. PhD thesis, University of Warwick.

Boden, Rich (2009) Metabolism of dimethylsulfide in the bacteria. PhD thesis, University of Warwick.

Braddick, Darren (2012) Quantitative assay methods and mathematical modelling of peptidoglycan transglycosylation. PhD thesis, University of Warwick.

Bright, John, 1950- (1983) The physiological activity of attached bacteria. PhD thesis, University of Warwick.

Brind, Robert Ian (2000) The characterisation of Plc1 : a phospholipase C enzyme identified in the fission yeast Schizosaccharomyces pombe. PhD thesis, University of Warwick.

Brown, Jason Lee, 1973- (2000) Expression systems for adenovirus late proteins. PhD thesis, University of Warwick.

Brown, Richard Henry, 1944- (1969) A study of the cell envelope of Halobacterium salinarium. PhD thesis, University of Warwick.

Carbonero, Franck (2010) Distributions of model microorganisms along an estuarine gradient. PhD thesis, University of Warwick.

Chambers, Stephen Alexander, 1964- (1989) The production, purification and catalytic utility of lignin peroxidase from "sporotrichum pulverulentum". PhD thesis, University of Warwick.

Chan, Yi-Wah (2010) Characterisation of bacteriophages that infect Acaryochloris. PhD thesis, University of Warwick.

Chawdhri, Rizwana F. (1992) The distribution and diversity of nucleoside N-deoxyribosyltransferase among lactic acid bacteria. PhD thesis, University of Warwick.

Cheng, Xi, Ph.D. (2011) Dynamic assembly, disassembly and bundling of the bacterial cell division protein FtsZ and YgfE (ZapA). PhD thesis, University of Warwick.

Chu, Jie (2012) Towards and understanding of multiple paralogues for metal-handling genes in a coastal cyanobacterium. PhD thesis, University of Warwick.

Clark, Darren Alan, 1969- (1995) The study of acidophilic, moderately thermophilic iron-oxidizing bacteria. PhD thesis, University of Warwick.

Clarke, Ian Nicholas, 1957- (1982) Genomic variation in rotaviruses. PhD thesis, University of Warwick.

Cleary, David William (2012) Detection of microbial taxa in complex communities : impacts of relative abundance, gene transfer and persistence of target DNA. PhD thesis, University of Warwick.

Cock, Peter J. A., 1978- (2008) Two-component regulation: modelling, predicting & identifying protein-protein interactions & assessing signalling networks of bacteria. PhD thesis, University of Warwick.

Cowan, Richard H. (2009) Refolding of protein kinases. PhD thesis, University of Warwick.

Craven, Mark Antony (1997) Bacteria classification with an electronic nose employing artificial neural networks. PhD thesis, University of Warwick.

Crombie, Andrew (2011) Metabolism of methane and propane and the role of the glyoxylate bypass enzymes in Methylocella silvestris BL2. PhD thesis, University of Warwick.

Dilger, Erin (2013) The effects of host-vector relationships and density dependence on the epidemiology of visceral leishmaniasis. PhD thesis, University of Warwick.

Eriksson, Inger Viktoria (2013) The response of synechococcus sp. CC9311 to iron stress. PhD thesis, University of Warwick.

Eyice, Özge (2012) Diversity and activity of microorganisms degrading methylated sulphur compounds in terrestrial environments. PhD thesis, University of Warwick.

Flaxman, Christine Susan (1995) A study of the regulation of undecylprodigiosin biosynthesis in Streptomyces coelicolor A3(2). PhD thesis, University of Warwick.

Godfrey, Emma L. (2009) Investigating the signalling characteristics of Gα subunits in the fission yeast Schizosaccharomyces pombe. PhD thesis, University of Warwick.

Graham, James Fionnlagh (2009) An investigation into the subcellular localisation of co-factors that stimulate prion protein conversion. PhD thesis, University of Warwick.

Griffiths, Scott Andrew (2009) Adaptation and population dynamics arising from the bacteriophage-host system ΦC31-Streptomyces coelicolor M145. PhD thesis, University of Warwick.

Hart, Philip John (2010) The cytosolic fate of ricin A chain in target cells. PhD thesis, University of Warwick.

Hicks, Nicola, 1968- (1992) The enzymatic and chemical synthesis of nucleoside analogues using N-deoxyribosyltransferase from Lactobacillus leichmannii. PhD thesis, University of Warwick.

Holmes, Antony (2009) Understanding morphogenesis in myxobacteria from a theoretical and experimental perspective. PhD thesis, University of Warwick.

Jakubovics, Nicholas S. (1998) Biofilms in the potable water distribution network. PhD thesis, University of Warwick.

Jia, Ying, 1977- (2009) An investigation into the adsorption of cyanophages to their cyanobacterial hosts. PhD thesis, University of Warwick.

Johnson-Rollings, Ashley S. (2012) A polyphasic approach to the study of chitinolytic bacteria in soil. PhD thesis, University of Warwick.

Kallifidas, Dimitrios (2001) Horizontal gene transfer and evolution of antibiotic gene clusters. PhD thesis, University of Warwick.

Khera, Tanya (2012) The diversity and distribution of Mycobacterium species in varying ecological and climatic environments. PhD thesis, University of Warwick.

Kulkarni, Anurag (2011) The role of VIF in overcoming the APOBEC3G block to HIV-1 replication. PhD thesis, University of Warwick.

Kumaresa, Deepak (2009) Molecular ecology of methanotrophs in a landfill cover soil. PhD thesis, University of Warwick.

Laskaris, Paris (2009) Evolution of the streptomycin and viomycin biosynthetic clusters and resistance genes. PhD thesis, University of Warwick.

Lawrence, Anne C., 1953- (1978) Microbial diversity : a consequence of the aquatic environment. PhD thesis, University of Warwick.

Lewis, Laura Ann (2012) Investigating the influence of phytopathogenic effectors upon host transcription. PhD thesis, University of Warwick.

Marlow, Victoria A. (2013) Mechanistic studies of acetolactate decarboxylase. PhD thesis, University of Warwick.

Marshall, Rowena Margaret (1985) Thermophilic acidophilic bacteria: iron, sulphur and mineral oxidation. PhD thesis, University of Warwick.

Martino, Angela (2013) A new serogroup B meningococcal vaccine : biophysical characterisation of its protein components. PhD thesis, University of Warwick.

Matejtschuk, Paul (1986) Structure and ligand-binding properties of abnormal human albumins. PhD thesis, University of Warwick.

Matos, Cristina F. R. O. (2010) Tat-mediated quality control in Escherichia coli. PhD thesis, University of Warwick.

McEldowney, Sharron (1984) Attachment of freshwater bacteria to solid surfaces. PhD thesis, University of Warwick.

Melegaro, Alessia (2005) Epidemiology, mathematical modelling and economics of Streptococcus pneumoniae : assessing the potential impact of vaccination. PhD thesis, University of Warwick.

Mook, Piers A. N. (2012) Redefining the population at risk of listeriosis in England and Wales. PhD thesis, University of Warwick.

Natale, Alessandra Pia (2010) Genotypic and phenotypic flexibility of microbial communities. PhD thesis, University of Warwick.

Nazaries, Loïc (2011) Impact of land-use changes on the methanotrophic community structure. PhD thesis, University of Warwick.

Needham, James (2009) Analysis of a putative crtW gene of Myxococcus xanthus. PhD thesis, University of Warwick.

Nilsson Lock, Gun Antonia Evelina (2011) Mutational and computational characterization of transmembrane domains in the fungal G protein-coupled pheromone receptors STE2 and Mam2. PhD thesis, University of Warwick.

Noakes, Karen (1999) Exploiting the retrograde transport of disarmed toxins for the delivery of exogenous antigens into MHC class 1 presentation pathway. PhD thesis, University of Warwick.

O'Connell, Nuala H. (2003) A study of Clostridium difficile in biofilm mode of growth using the Sorbarod filter system. MD thesis, University of Warwick.

O'Neill, Colette (2010) Antibiotic-resistant staphylococci in the agricultural environment : reservoirs of resistance and infection. PhD thesis, University of Warwick.

Patel, Kirti Kantilal (2001) Biophysical studies on novel metallo-systems and their interactions with DNA and small molecules. PhD thesis, University of Warwick.

Patel, Nisha A. (2012) The use of recently developed mass spectrometry-based proteomic approaches for the study of methylocella silvestris BL2. PhD thesis, University of Warwick.

Patel, Prakash, 1983- (2009) Investigations of Streptomyces coelicolor A3(2) siderophore binding proteins. PhD thesis, University of Warwick.

Pearman, John K. (2012) Molecular ecology and transcriptomics of marine photosynthetic picoeukaryotes. PhD thesis, University of Warwick.

Pitt, Frances Diana (2010) Functional characterisation of the pst1 and pst2 gene clusters in Synechocystis sp. PCC6803. PhD thesis, University of Warwick.

Pringle, James Howard (1984) The role of bacterial surface polymers in the adhesion of freshwater bacteria to solid surfaces. PhD thesis, University of Warwick.

Quigley, Andrew Michael (2010) The two-component system controlling inducible glycopeptide resistance in Enterococci. PhD thesis, University of Warwick.

Rahman, M. Tanvir (2010) Molecular ecology of facultative methanotrophs. PhD thesis, University of Warwick.

Ren, Chao, Ph.D. (2011) The twin arginine translocation pathway in Escherichia coli : mechanism and quality control. PhD thesis, University of Warwick.

Robson, William Nigel, 1963- (1993) Physiological and genetic studies of deoxynojirimycin production in streptomyces species. PhD thesis, University of Warwick.

Rodolis, Maria T. (2013) Interaction of translocase MraY with the antibacterial E protein from bacteriophage ΦX174. PhD thesis, University of Warwick.

Sandhu, Sandeep (2010) Development of an antibody-based assay for methicillin resistant Staphylococcus aureus using synthetic peptidoglycan precursors. PhD thesis, University of Warwick.

Sargeant, Stephanie L. (2013) Microbial utilisation of methanol in seawater. PhD thesis, University of Warwick.

Shepherd, Jennifer (2011) Characterisation of pneumococcal peptidoglycan cross-linking enzymology. PhD thesis, University of Warwick.

Simmons, Hilary, 1961- (1988) Establishment and analysis of bacterial biofilm subjected to fluid flow under varying nutrient conditions. PhD thesis, University of Warwick.

Simmons, Susan, 1974- (2001) The microbial ecology of acidic environments. PhD thesis, University of Warwick.

Sotenko, Maria V. (2010) Bicatalytic conversion of glycerol to value-added products. PhD thesis, University of Warwick.

Summerfield, Andrew (2009) Role of co-factor biosynthesis in Listeria monocytogenes virulence. PhD thesis, University of Warwick.

Thomson, Nicholas Robert, 1970- (1996) Co-ordinate regulation of antibiotic and pigment production by the Serratia Rap protein : evidence for a novel family of regulatory proteins. PhD thesis, University of Warwick.

Tételin, Stéphanie (2008) An analysis of wnt signalling molecules in Xenopus pronephros development. PhD thesis, University of Warwick.

Warren, Gemma Zara Louise (2009) The twin arginine translocase pathway : a functional and structural study in Escherichia coli and Synechocystis sp. PCC6803. PhD thesis, University of Warwick.

Watkins, Gemma L. (2012) A comparison of HIV-1 and HIV-2 gag gene expression. PhD thesis, University of Warwick.

Williams, Simon (Researcher in life sciences) (2013) Microbial ecology of anammox bacteria in estuarine and oxygen minimum zone environments. PhD thesis, University of Warwick.

Witcomb, Luci (2012) The in situ analysis of the microbial community associated with footrot of sheep. PhD thesis, University of Warwick.

Woolven-Allen, John (2008) An investigation into the potential impacts of ocean acidification and ocean fertilisation on the genetic diversity of marine bacterial assemblages. PhD thesis, University of Warwick.

Wormleaton, Sally Louise (2000) Molecular and biological studies of fast and slow killing granuloviruses. PhD thesis, University of Warwick.

Wright, Emma, (Researcher in life sciences) (2013) The effect of pathogens on honeybee learning and foraging behaviour. PhD thesis, University of Warwick.

Wright, Jordan, 1983- (2010) The role of PML proteins in adenovirus type 5 infection and the type I interferon response. PhD thesis, University of Warwick.

Yaxley, Alice M. (2009) Study of the complete genome sequence of Streptomyces scabies (or scabiei) 87.22. PhD thesis, University of Warwick.

Young, Jamie Stuart (2003) Molecular detection of Mycobacterium bovis in the environment. PhD thesis, University of Warwick.