Journal Article

Abdel-Glil, Mostafa Y., Hotzel, Helmut, Tomaso, Herbert, Didelot, Xavier, Brandt, Christian, Seyboldt, Christian, Linde, Jörg, Schwarz, Stefan, Neubauer, Heinrich and El-Adawy, Hosny (2023) Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany. Frontiers In Veterinary Science, 9 . 1069062. doi:10.3389/fvets.2022.1069062 ISSN 2297-1769.

Abuhammad, Areej, Fullam, Elizabeth, Bhakta, Sanjib, Russell, Angela, Morris, Garrett, Finn, Paul and Sim, Edith (2014) Exploration of piperidinols as potential antitubercular agents. Molecules, Volume 19 (Number 10). pp. 16274-16290. doi:10.3390/molecules191016274 ISSN 1420-3049.

Abuhammad, Areej, Fullam, Elizabeth, Lowe, Edward D., Staunton, David, Kawamura, Akane, Westwood, Isaac, Bhakta, Sanjib, Garner, Alun Christopher, Wilson, David L., Seden, Peter T., Davies, Stephen G., Russell, Angela J., Garman, Elspeth F. and Sim, Edith (2012) Piperidinols that show anti-tubercular activity as inhibitors of arylamine N-acetyltransferase: an essential enzyme for mycobacterial survival inside macrophages. PLoS One, Volume 7 (Number 12). Article number e52790. doi:10.1371/journal.pone.0052790 ISSN 1932-6203.

Achadu, Ojodomo J., Nwaji, Njemuwa, Lee, Dongkyu, Lee, Jaebeom, Akinoglu, Eser M., Giersig, Michael and Park, Enoch Y. (2022) 3D hierarchically porous magnetic molybdenum trioxide@gold nanospheres as a nanogap-enhanced Raman scattering biosensor for SARS-CoV-2. Nanoscale Advances, 4 (3). 871-883 . doi:10.1039/d1na00746g ISSN 2516-0230.

Achtman, Mark (2011) A broad brush, global overview of bacterial sexuality. PLoS Genetics, Volume 7 (Number 8). Article number e1002255. doi:10.1371/journal.pgen.1002255 ISSN 1553-7390.

ATCC14028s Study Group (Including: Achtman, Mark, Van den Broeck, Frederik, Cooper, Kerry K., Lemey, Philippe, Parker, Craig T. and Zhou, Zhemin). (2021) Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature. PLoS Genetics, 17 (9). e1009820. doi:10.1371/journal.pgen.1009820 ISSN 1553-7390.

Achtman, Mark, Wain, John, Weill, François-Xavier, Nair, Satheesh, Zhou, Zhemin, Sangal, Vartul, Krauland, Mary G., Hale, James L., Harbottle, Heather, Uesbeck, Alexandra, Dougan, Gordon, Harrison, Lee H. and Brisse, Sylvain (2012) Multilocus sequence typing as a replacement for serotyping in salmonella enterica. PLoS Pathogens, Volume 8 (Number 6). Article number e1002776. doi:10.1371/journal.ppat.1002776 ISSN 1553-7374.

Achtman, Mark, Zhou, Zhemin, Charlesworth, Jane and Baxter, Laura (2022) EnteroBase : Hierarchical clustering of 100,000s of bacterial genomes into species/sub-species and populations. Philosophical Transactions of the Royal Society B: Biological Sciences, 377 (1861). 20210240. doi:10.1098/rstb.2021.0240 ISSN 0962-8436.

Acman, Mislav, Wang, Ruobing, van Dorp, Lucy, Shaw, Liam P., Wang, Qi, Luhmann, Nina, Yin, Yuyao, Sun, Shijun, Chen, Hongbin, Wang, Hui and Balloux, Francois (2022) Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene bla NDM. Nature Communications, 13 (1). 1131. doi:10.1038/s41467-022-28819-2 ISSN 2041-1723.

Adedokun, Sulaimon and Uthman, Olalekan A. (2020) Individual and contextual correlates of mosquito net use among women in Nigeria. Malaria Journal, 19 (1). 138. doi:10.1186/s12936-020-03219-3 ISSN 1475-2875.

Aggarwal, Surya D. , Lloyd, Adrian J., Yerneni, Saigopalakrishna S., Narciso, Ana Rita, Shepherd, Jennifer, Roper, David I., Dowson, Christopher G., Filipe, Sergio R and Hiller, N Luisa (2021) A molecular link between cell wall biosynthesis, translation fidelity, and stringent response in Streptococcus pneumoniae. Proceedings of the National Academy of Sciences of the United States of America, 118 (14). e2018089118. doi:10.1073/pnas.2018089118 ISSN 0027-8424.

Agoti, Charles N., Mwihuri, Alexander G., Sande, Charles J., Onyango, Clayton O., Medley, Graham, Cane, Patricia and Nokes, D. James (2012) Genetic relatedness of infecting and reinfecting respiratory syncytial virus strains identified in a birth cohort from rural Kenya. Journal of Infectious Diseases, Volume 206 (Number 10). pp. 1532-1541. doi:10.1093/infdis/jis570 ISSN 0022-1899.

Agoti, Charles N., Phan, My V. T., Munywoki, Patrick K., Githinji, George, Medley, Graham, Cane, Patricia A., Kellam, Paul, Cotton, Matthew and Nokes, D. James (2019) Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant. Scientific Reports, 9 . 10076. doi:10.1038/s41598-019-46509-w ISSN 2045-2322.

Aguilo-Ferretjans, Maria del Mar, Bosch, Rafael, Puxty, Richard J., Latva, Mira, Zadjelovic, Vinko, Chhun, Audam, Sousoni, Despoina, Polin, Marco, Scanlan, David J. and Christie-Oleza, Joseph A. (2021) Pili allow dominant marine cyanobacteria to avoid sinking and evade predation. Nature Communications, 12 (1). 1857. doi:10.1038/s41467-021-22152-w ISSN 2041-1723.

Agustika, Dyah K., Mercuriani, Ixora S., Purnomo, Chandra W., Hartono, Sedyo, Triyana, Kuwat, Iliescu, Doina D. and Leeson, Mark S. (2022) Fourier transform infrared spectrum pre-processing technique selection for detecting PYLCV-infected chilli plants. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 278 . 121339. doi:10.1016/j.saa.2022.121339 ISSN 1386-1425.

Ahangar, Mohd Syed, Furze, Christopher M., Guy, Collette S., Cooper, Charlotte, Maskew, Kathryn S, Graham, Ben, Cameron, Alexander and Fullam, Elizabeth (2018) Structural and functional determination of homologs of the Mycobacterium tuberculosis N-acetylglucosamine-6-phosphate deacetylase (NagA). Journal of Biological Chemistry, 293 (25). pp. 9770-9783. doi:10.1074/jbc.RA118.002597 ISSN 0021-9258.

Ahlstrom, Christina, Muellner, Petra, Spencer, Simon E. F., Hong, Samuel, Saupe, Amy, Rovira, Albert, Hedberg, Craig, Perez, Andres, Muellner, Ulrich and Alvarez, Julio (2017) Inferring source attribution from a multi-year multi-source dataset of Salmonella in Minnesota. Zoonoses and Public Health, 64 (8). pp. 589-598. doi:10.1111/zph.12351 ISSN 1863-1959.

Ailloud, Florent, Didelot, Xavier, Woltemate, Sabrina, Pfaffinger, Gudrun, Overmann, Jörg, Bader, Ruth Christiane, Schulz, Christian, Malfertheiner, Peter and Suerbaum, Sebastian (2019) Within-host evolution of Helicobacter pylori shaped by niche-specific adaptation, intragastric migrations and selective sweeps. Nature Communications, 10 (1). 2273 . doi:10.1038/s41467-019-10050-1 ISSN 2041-1723.

Akbar, Rahmad, Bashour, Habib, Rawat, Puneet, Robert, Philippe A., Smorodina, Eva, Cotet, Tudor-Stefan, Flem-Karlsen, Karine, Frank, Robert, Mehta, Brij Bhushan, Vu, Mai Ha, Zengin, Talip, Gutierrez-Marcos, José F., Lund-Johansen, Fridtjof, Andersen, Jan Terje and Greiff, Victor (2022) Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies. mAbs, 14 (1). 2008790. doi:10.1080/19420862.2021.2008790 ISSN 1942-0870.

Alam, Mohammad T., Amos, Gregory C. A., Murphy, Andrew, Murch, Simon, Wellington, E. M. H. and Arasaradnam, Ramesh P. (2020) Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels. Gut Pathogens, 12 . 2020. doi:10.1186/s13099-019-0341-6 ISSN 1757-4749.

STREAM Consortium (Including: Alam, Mohammad T., Merlo, Maria E., Hodgson, D. A., Wellington, E. M. H., Takano, Eriko and Breitling, Rainer). (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (No.202). p. 202. doi:10.1186/1471-2164-11-202 ISSN 1471-2164.

Alam, Mohammad Tauqee, Takano, Eriko and Breitling, Rainer (2011) Prioritizing orphan proteins for further study using phylogenomics and gene expression profiles in Streptomyces coelicolor. BMC Research Notes, 4 . p. 325. doi:10.1186/1756-0500-4-325 ISSN 1756-0500.

Alberti, Fabrizio, Leng, Daniel J., Wilkening, Ina, Song, Lijiang, Tosin, Manuela and Corre, Christophe (2019) Triggering the expression of a silent gene cluster from genetically intractable bacteria results in scleric acid discovery. Chemical Science, 10 (2). pp. 453-463. doi:10.1039/C8SC03814G ISSN 2041-6520.

Albrithen, Hamad, Alzahrani, Khalid E., Assaifan, Abdulaziz K., Braim, Mona, Alshammari, Abeer and Alodhayb, Abdullah (2022) Utilizing photothermally induced oscillation damping parameters for the determination of bacterial load suspended in microfluidic resonators. Journal of King Saud University - Science, 34 (5). 102090. doi:10.1016/j.jksus.2022.102090 ISSN 10183647.

Alderwick, Luke J., Lloyd, Georgina S., Lloyd, Adrian, Lovering, Andrew L., Eggeling, L. and Besra, Gurdyal S. (2011) Biochemical characterization of the Mycobacterium tuberculosis phosphoribosyl-1-pyrophosphate synthetase. Glycobiology, Vol.21 (No.4). pp. 410-425. doi:10.1093/glycob/cwq173 ISSN 1460-2423.

Alenius, Suvi, Kajantie, Eero, Sund, Reijo, Nurhonen, Markku, Haaramo, Peija, Näsänen-Gilmore, Pieta, Vääräsmäki, Marja, Lemola, Sakari, Räikkönen, Katri, Schnitzlein, Daniel D., Wolke, Dieter, Gissler, Mika and Hovi, Petteri (2023) Risk-taking behavior of adolescents and young adults born preterm. The Journal of Pediatrics, 253 . pp. 135-143. doi:10.1016/j.jpeds.2022.09.032 ISSN 0022-3476.

Aletrari, Mina-Olga , McKibbin, Craig, Williams, Helen, Pawar, Vidya, Pietroni, Paola, Lord, Mike, Flitsch, Sabine L., Whitehead, Roger C., Swanton, Eileithyia, High, Stephen and Spooner, Robert A. (2011) Eeyarestatin 1 interferes with both retrograde and anterograde intracellular trafficking pathways. PLoS One, Vol.6 (No.7). e22713. doi:10.1371/journal.pone.0022713 ISSN 1932-6203.

Alhujaily, Muhanad Musaad M., Abbas, Hafsa, Xue, Mingzhan, de la Fuente, Alberto, Rabbani, Naila and Thornalley, Paul J. (2021) Studies of glyoxalase 1-linked multidrug resistance reveal glycolysis-derived reactive metabolite, methylglyoxal, is a common contributor in cancer chemotherapy targeting the spliceosome. Frontiers in Oncology, 11 . 748698. doi:10.3389/fonc.2021.748698 ISSN 2234-943X.

Ali, Adnan, Somfai, Ellák and Grosskinsky, Stefan (2012) Reproduction-time statistics and segregation patterns in growing populations. Physical Review E, Vol.85 (No.2). Article no. 021923. doi:10.1103/PhysRevE.85.021923 ISSN 1063-651X.

Ali, H. Raza, Dariush, Aliakbar, Provenzano, Elena, Bardwell, Helen, Abraham, Jean E., Iddawela, Mahesh, Vallier, Anne-Laure, Hiller, Louise, Dunn, Janet A., Bowden, Sarah J., Hickish, Tamas, McAdam, Karen, Houston, Stephen, Irwin, Mike J., Pharoah, Paul D. P., Brenton, James D., Walton, Nicholas A., Earl, Helena M. and Caldas, Carlos (2016) Computational pathology of pre-treatment biopsies identifies lymphocyte density as a predictor of response to neoadjuvant chemotherapy in breast cancer. Breast Cancer Research, 18 (1). 21. doi:10.1186/s13058-016-0682-8 ISSN 1465-542X.

Aliabadi, Shirin, Anyanwu, Philip E., Beech, Elizabeth, Jauneikaite, Elita, Wilson, Peter, Hope, Russell, Majeed, Azeem, Muller-Pebody, Berit and Costelloe, Céire (2021) Effect of antibiotic stewardship interventions in primary care on antimicrobial resistance of Escherichia coli bacteraemia in England (2013–18) : a quasi-experimental, ecological, data linkage study. The Lancet Infectious Diseases, 21 (12). pp. 1689-1700. doi:10.1016/S1473-3099(21)00069-4 ISSN 1473-3099.

Alix, Karine, Joets, Johann, Ryder, Carol D., Moore, Jonathan D., Barker, Guy C., Bailey, John P., King , Graham J. and Heslop-Harrison, J. (John) (2008) The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation. Plant Journal, Vol.56 (No.6). pp. 1030-1044. doi:10.1111/j.1365-313X.2008.03660.x ISSN 0960-7412.

Alobaid, Meshal A., Richards, Sarah-Jane, Alexander, Morgan R., Gibson, Matthew I. and Ghaemmaghami, Amir M. (2020) Developing immune-regulatory materials using immobilized monosaccharides with immune-instructive properties. Materials Today Bio, 8 . 100080. doi:10.1016/j.mtbio.2020.100080 ISSN 2590-0064.

Alpern, Steve, Bui, Thuy, Lidbetter, Thomas and Papadaki, Katerina (2022) Continuous patrolling games. Operations Research, 70 (6). pp. 3076-3089. doi:10.1287/opre.2022.2346 ISSN 0030-364X.

(2019) Effect of point-of-care C-reactive protein testing on antibiotic prescription in febrile patients attending primary care in Thailand and Myanmar : an open-label, randomised, controlled trial. The Lancet Global Health, 7 (1). E119-E131. doi:10.1016/S2214-109X(18)30444-3 ISSN 2214-109X.

Alves, Patrícia M., Al-Badi, Eide, Withycombe, Cathryn, Jones, Paul M, Purdy, Kevin J. and Maddocks, Sarah E. (2018) Interaction between Staphylococcus aureus and Pseudomonas aeruginosa is beneficial for colonisation and pathogenicity in a mixed-biofilm. Pathogens and disease, 76 (1). fty003. doi:10.1093/femspd/fty003 ISSN 2049-632X.

Amessou, Mohamed, Fradagrada, Alexandre, Falguières, Thomas, Lord, Mike, Smith, Daniel C., Roberts, L. M. (Lynne M.), Lamaze, Christophe and Johannes, Ludger (2007) Syntaxin 16 and syntaxin 5 are required for efficient retrograde transport of several exogenous and endogenous cargo proteins. Journal of Cell Science, Vol.120 (No.8). pp. 1457-1468. doi:10.1242/jcs.03436 ISSN 0021-9533.

Amin, Dina, Abolmaaty, Assem , Tolba, Sahar , Abdallah, Nagwa and Wellington, E. M. H. (2018) Phylogenic characteristics of a unique antagonistic micromonospora Sp. Rc5 to S. aureus isolated from Sinai Desert of Egypt. Annual Research & Review in Biology, 22 (2). pp. 1-15. doi:10.9734/ARRB/2018/38318 ISSN 2347-565X.

Amin, Munia, Kothamachu, Varun B., Feliu, Elisenda, Scharf, Birgit E., Porter, Steven L. and Soyer, Orkun S. (2014) Phosphate sink containing two-component signaling systems as tunable threshold devices. PLoS Computational Biology, Volume 10 (Number 10). Article number e1003890. doi:10.1371/journal.pcbi.1003890 ISSN 1553-7358.

Amos, Gregory C. A., Borsetto, Chiara, Laskaris, Paris, Krsek, Martin, Berry, Andrew E., Newsham, Kevin K., Calvo-Bado, Leo A., Pearce, David A., Vallin, Carlos and Wellington, E. M. H. (2015) Designing and implementing an assay for the detection of rare and divergent NRPS and PKS clones in European, Antarctic and Cuban soils. PLoS One, 10 (9). pp. 1-15. e0138327. doi:10.1371/journal.pone.0138327 ISSN 1932-6203.

Amos, Gregory C. A., Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment. Journal of Antimicrobial Chemotherapy, Volume 69 (Number 7). pp. 1785-1791. doi:10.1093/jac/dku079 ISSN 0305-7453.

Amos, Gregory C. A., Ploumakis, Semina, Zhang, Lihong, Hawkey, Peter M., Gaze, William H. and Wellington, E. M. H. (2018) The widespread dissemination of integrons throughout bacterial communities in a riverine system. The ISME Journal, 12 (3). pp. 681-691. doi:10.1038/s41396-017-0030-8 ISSN 1751-7362.

Amos, Gregory C. A., Sergaki, Chrysi, Logan, Alastair, Iriarte, Rolland, Bannaga, Ayman, Chandrapalan, Subashini, Wellington, Elizabeth M. H., Rijpkema, Sjoerd and Arasaradnam, Ramesh P. (2021) Exploring how microbiome signatures change across inflammatory bowel disease conditions and disease locations. Scientific Reports, 11 (1). 18699. doi:10.1038/s41598-021-96942-z ISSN 2045-2322.

Andrawis, Alexsandra, Tapa, James, Vlaev, Ivo, Read, Daniel, Schmidtke, Kelly, Chow, Eric P. F., Lee, David, Fairley, Christopher K. and Ong, Jason J. (2022) Applying behavioural insights to HIV prevention and management : a scoping review. Current HIV/AIDS Reports , 19 . pp. 358-374. doi:10.1007/s11904-022-00615-z ISSN 1548-3568.

Anonye, Blessing (2018) Commentary : Bacteriophage transfer during faecal microbiota transplantation in Clostridium difficile infection is associated with treatment outcome. Frontiers in Cellular and Infection Microbiology, 8 . 104. doi:10.3389/fcimb.2018.00104 ISSN 2235-2988.

Anonye, Blessing (2016) General commentary on : alternatives to antibiotic growth promoters in animals. Frontiers in Veterinary Science, 3 . 74. doi:10.3389/fvets.2016.00074 ISSN 2297-1769.

Anonye, Blessing O., Nweke, Valentine, Furner-Pardoe, Jessica, Gabrilska, Rebecca, Rafiq, Afshan, Ukachukwu, Faith, Bruce, Julie, Lee, Christina, Unnikrishnan, Meera, Rumbaugh, Kendra P., Snyder, Lori A. S. and Harrison, Freya (2020) The safety profile of Bald’s eyesalve for the treatment of bacterial infections. Scientific Reports, 10 (1). 17513. doi:10.1038/s41598-020-74242-2 ISSN 2045-2322.

Ansell, T. Bertie, Curran, Luke, Horrell, Michael R., Pipatpolkai, Tanadet, Letham, Suzanne C., Song, Wanling, Siebold, Christian, Stansfeld, Phillip J., Sansom, Mark S. P. and Corey, Robin A. (2021) Relative affinities of protein–cholesterol interactions from equilibrium molecular dynamics simulations. Journal of Chemical Theory and Computation, 17 (10). pp. 6548-6558. doi:10.1021/acs.jctc.1c00547 ISSN 1549-9626.

Anyanwu, Philip, Borek, Aleksandra, Tonkin-Crine, Sarah, Beech, Elizabeth and Costelloe, Ceire (2020) Conceptualising the integration of strategies by clinical commissioning groups in England towards the antibiotic prescribing targets for the quality premium financial incentive scheme : a short report. Antibiotics, 9 (2). 44. doi:10.3390/antibiotics9020044 ISSN 2079-6382.

Araújo, Carlos Leonardo de A., Dias, Larissa M., Veras, Adonney A. O., Alves, Jorianne T. C., Cavalcante, Ana Lídia Q., Dowson, Christopher G., Azevedo, Vasco, Ramos, Rommel T. J., Silva, Artur and Carneiro, Adriana R. (2016) Whole-genome sequence of Corynebacterium pseudotuberculosis 262 biovar equi isolated from cow milk. Genome Announcements, 4 (2). e00176. doi:10.1128/genomeA.00176-16 ISSN 2169-8287.

Armitage, Andrew D., Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata Species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10 . 3124. doi:10.3389/fmicb.2019.03124 ISSN 1664-302X.

Armond, Jonathan W., Vladimirou, Elina, McAinsh, Andrew D. and Burroughs, Nigel John (2016) KiT : a MATLAB package for kinetochore tracking. Bioinformatics, 32 (12). pp. 1917-1919. doi:10.1093/bioinformatics/btw087 ISSN 1367-4803.

Arrieta, Jorge, Polin, Marco, Saleta-Piersanti, Ramon and Tuval, Idan (2019) Light control of localized photobioconvection. Physical Review Letters, 123 (15). 158101. doi:10.1103/PhysRevLett.123.158101 ISSN 0031-9007.

Asare‐Bediako, Elvis, Jones, Julie E. , Hambidge, Angela, Stevenson, Mark, Mead, Andrew, Jenner, Carol E. and Walsh, John A. (2020) The incidence of Turnip yellows virus in oilseed rape crops (Brassica napus L.) in three different regions of England over three consecutive growing seasons and the relationship with the abundance of flying Myzus persicae. Annals of Applied Biology, 176 (2). pp. 130-137. doi:10.1111/aab.12565 ISSN 0003-4746.

Ashraf, Neelma, Zafar, Sana, Makitrynskyy, Roman, Bechthold, Andreas, Spiteller, Dieter, Song, Lijiang, Anwar, Munir Ahmad, Luzhetskyy, Andriy, Khan, Ali Nisar, Akhtar, Kalsoom and Khaliq, Shazia (2022) Revealing genome-based biosynthetic potential of Streptomyces sp. BR123 isolated from sunflower rhizosphere with broad spectrum antimicrobial activity. Antibiotics, 11 (8). 1057. doi:10.3390/antibiotics11081057 ISSN 2079-6382.

Asiani, Karishma R., Williams, Huw, Bird, Louise, Jenner, Matthew, Searle, Mark S., Hobman, Jon L., Scott, David J. and Soultanas, Panos (2016) SilE is an intrinsically disordered periplasmic ‘molecular sponge' involved in bacterial silver resistance. Molecular Microbiology, 101 (5). pp. 731-742. doi:10.1111/mmi.13399 ISSN 0950-382X.

Atkins, Madison, Týč, Jiří, Shafiq, Shahaan, Ahmed, Manu, Bertiaux, Eloïse, De Castro Neto, Artur Leonel, Sunter, Jack, Bastin, Philippe, Dean, Samuel and Vaughan, Sue (2020) CEP164C regulates flagellum length in stable flagella. Journal of Cell Biology, 220 (1). e202001160. doi:10.1083/jcb.202001160 ISSN 0021-9525.

Auguste, Peter, Tsertsvadze, Alexander, Court, Rachel A. and Pink, Joshua (2016) A systematic review of economic models used to assess the cost-effectiveness of strategies for identifying latent tuberculosis in high-risk groups. Tuberculosis, 99 . pp. 81-91. doi:10.1016/j.tube.2016.04.007 ISSN 1472-9792.

Auguste, Peter, Tsertsvadze, Alexander, Pink, Joshua, Court, Rachel A., McCarthy, Noel D., Sutcliffe, P. (Paul) and Clarke, Aileen (2017) Comparing interferon-gamma release assays with tuberculin skin test for identifying latent tuberculosis infection that progresses to active tuberculosis : systematic review and meta-analysis. BMC Infectious Diseases, 17 (1). doi:10.1186/s12879-017-2301-4 ISSN 1471-2334.

Awofisayo-Okuyelu, A., Hall, I., Adak, G., Hawker, J. I., Abbott, Susan and McCarthy, Noel D. (2017) A systematic review and meta-analysis on the incubation period of Campylobacteriosis. Epidemiology and Infection, 145 (11). pp. 2241-2253. doi:10.1017/S0950268817001303 ISSN 0950-2688.

Awofisayo-Okuyelu, Adedoyin, Brainard, Julii, Hall, Ian and McCarthy, Noel D. (2019) Incubation period of Shiga-toxin producing Escherichia coli. Epidemiologic Reviews, 41 (1). pp. 121-129. doi:10.1093/epirev/mxz001 ISSN 0193-936X.

Awofisayo-Okuyelu, Adedoyin, Pratt, Adrian, McCarthy, Noel D. and Hall, Ian (2019) Within-host mathematical modelling of the incubation period of Salmonella Typhi. Royal Society Open Science, 6 (9). 182143. doi:10.1098/rsos.182143 ISSN 2054-5703.

Awofisayo-Okuyelu , Adedoyin , McCarthy, Noel D., Mgbakor , Ifunanya and Hall, Ian (2018) Incubation period of typhoidal salmonellosis : a systematic review and meta-analysis of outbreaks and experimental studies occurring over the last century. BMC Infectious Diseases, 18 . 483. doi:10.1186/s12879-018-3391-3 ISSN 1471-2334.

(2021) The etiology of pneumonia in HIV-uninfected children in Kilifi, Kenya : findings from the pneumonia etiology research for child health (PERCH) Study. The Pediatric infectious disease journal, 40 (9S). S29-S39. doi:10.1097/INF.0000000000002653 ISSN 1532-0987.

Babataheri, Avin, Roper, Marcus, Fermigier, Marc and Du Roure, Olivia (2011) Tethered fleximags as artificial cilia. Journal of Fluid Mechanics, Vol.678 . pp. 5-13. doi:10.1017/S002211201100005X ISSN 0022-1120.

Badescu, George O., Marsh, Andrew, Smith, Timothy R., Thompson, Andrew J. and Napier, R. (Richard) (2016) Kinetic characterisation of a single chain antibody against the Hormone Abscisic Acid : comparison with its parental monoclonal. PLoS One, 11 (3). pp. 1-14. e0152148. doi:10.1371/journal.pone.0152148 ISSN 1932-6203.

Bai, Chenyao, Leeson, Mark S. and Higgins, Matthew D. (2014) Minimum energy channel codes for molecular communications. Electronics Letters, 50 (23). pp. 1669-1671. doi:10.1049/el.2014.3345 ISSN 0013-5194.

Bai, Chenyao, Leeson, Mark S. and Higgins, Matthew D. (2015) Performance of SW-ARQ in bacterial quorum communications. Nano Communication Networks, Volume 6 (Number 1). pp. 3-14. doi:10.1016/j.nancom.2014.11.001 ISSN 1878-7789.

Bai, Chenyao, Leeson, Mark S., Higgins, Matthew D. and Lu, Yi (2016) Throughput and energy efficiency based packet size optimization of ARQ protocols in bacterial quorum communications. Transactions on Emerging Telecommunications Technologies, 27 (8). pp. 1128-1143. doi:10.1002/ett.3055 ISSN 2161-3915.

Bailo, Rebeca, Radhakrishnan, Anjana, Singh, Albel, Nakaya, Makoto, Fujiwara, Nagatoshi and Bhatt, Apoorva (2022) The mycobacterial desaturase DesA2 is associated with mycolic acid biosynthesis. Scientific Reports, 12 (1). 6943. doi:10.1038/s41598-022-10589-y ISSN 2045-2322.

Baker, Alexander N., Muguruza, Asier R., Richards, Sarah‐Jane, Georgiou, Panagiotis G., Goetz, Stephen, Walker, Marc, Dedola, Simone, Field, Robert A. and Gibson, Matthew I. (2022) Lateral flow glyco‐assays for the rapid and low‐cost detection of lectins–polymeric linkers and particle engineering are essential for selectivity and performance. Advanced Healthcare Materials, 11 (4). 2101784. doi:10.1002/adhm.202101784 ISSN 2192-2659.

Baldwin, Adam, Loughlin, Michael, Dr., Caubilla-Barron, Juncal, Kucerova, Eva, Manning, Georgina, Dowson, Christopher G. and Forsythe, S. J. (Steve J.) (2009) Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable clonal structures with clinical significance which do not correlate with biotypes. BMC Microbiology, Vol.9 (Article 223). doi:10.1186/1471-2180-9-223 ISSN 1471-2180.

Baltrus, David A., Nishimura, Marc T., Dougherty, Kevin M., Biswas, Surojit, Mukhtar, M. Shahid, Vicente, Joana G., Holub, E. B. and Dangl, J. L. (Jeffery L.) (2012) The molecular basis of host specialization in bean pathovars of Pseudomonas syringae. Molecular Plant-Microbe Interactions, Vol.25 (No.7). pp. 877-888. doi:10.1094/MPMI-08-11-0218 ISSN 0894-0282.

Barber, Thomas M., Kabisch, S., Pfeiffer, A. F. and Weickert, Martin O. (2020) The health benefits of dietary fibre. Nutrients, 12 (10). 3209. doi:10.3390/nu12103209 ISSN 2072-6643.

(2020) Diversity of HLA Class I and Class II blocks and conserved extended haplotypes in Lacandon Mayans. Scientific Reports, 10 (1). 3248. doi:10.1038/s41598-020-58897-5 ISSN 2045-2322.

Bass, David, van der Gast, Christopher, Thomson, Serena K., Neuhauser, Sigrid, Hilton, Sally and Bending, G. D. (2018) Plant rhizosphere selection of plasmodiophorid lineages from bulk soil : the importance of “hidden” diversity. Frontiers in Microbiology, 9 . 168. doi:10.3389/fmicb.2018.00168 ISSN 1664-302X.

Bathe, Stephan and Hausner, Martina (2006) Design and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities. BMC Microbiology, Vol.6 (No.54). doi:10.1186/1471-2180-6-54 ISSN 1471-2180.

Batson, Sarah, Rea, Dean, Fülöp, Vilmos and Roper, David I. (2010) Crystallization and preliminary X-ray analysis of a D-alanyl-D-alanine ligase (EcDdlB) from Escherichia coli. Journal of Experimental Psychology: Human Perception and Performance, Vol.66 (No.4). pp. 405-408. doi:10.1107/S1744309110003970 ISSN 0096-1523.

Batson, Sarah, de Chiara, Cesira, Majce, Vita, Lloyd, Adrian J., Gobec, Stanislav, Rea, Dean, Fülöp, Vilmos, Thoroughgood, Christopher W., Simmons, Katie J., Dowson, Christopher G., Fishwick, Colin W. G., de Carvalho, Luiz Pedro S. and Roper, David I. (2017) Inhibition of D-Ala : D-Ala ligase through a phosphorylated form of the antibiotic D-cycloserine. Nature Communications, 8 (1). 1939 . doi:10.1038/s41467-017-02118-7 ISSN 2041-1723.

Baxter, Laura, Roy, Proyash, Picot, Emma, Watts, Jess, Jones, Alexandra M., Wilkinson, Helen, Schäfer, Patrick, Gifford, Miriam L. and Lagunas, Beatriz (2021) Comparative genomics across three ensifer species using a new complete genome sequence of the Medicago symbiont Sinorhizobium (Ensifer) meliloti WSM1022. Microorganisms, 9 (12). 2428. doi:10.3390/microorganisms9122428 ISSN 2076-2607.

(2015) Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition. Infection and Immunity, Volume 83 (Number 5). pp. 1749-1764. doi:10.1128/IAI.02810-14 ISSN 0019-9567.

Becher, Paul G., Verschut, Vasiliki, Bibb, Maureen J., Bush, Matthew J., Molnár, Béla P., Barane, Elisabeth, Al-Bassam, Mahmoud M., Chandra, Govind, Song, Lijiang, Challis, Gregory L., Buttner, Mark J. and Flärdh, Klas (2020) Developmentally regulated volatiles geosmin and 2-methylisoborneol attract a soil arthropod to Streptomyces bacteria promoting spore dispersal. Nature microbiology, 5 . pp. 821-829. doi:10.1038/s41564-020-0697-x ISSN 2058-5276.

Benarroch, Jonatan M. and Asally, Munehiro (2020) The microbiologist’s guide to membrane potential dynamics. Trends in Microbiology, 28 (4). pp. 304-314. doi:10.1016/j.tim.2019.12.008 ISSN 0966-842X.

Berg, Hugo van den , Molina-Paris, Carmen and Sewell, Andrew K. (2011) Specific T-cell activation in an unspecific T-cell repertoire. Science Progress, Vol.94 (No.3). pp. 245-264. doi:10.3184/003685011X13139280383942 ISSN 0036-8504.

Bi, Dadi, Almpanis, Apostolos, Noel, Adam, Deng, Yansha and Schober, Robert (2021) A survey of molecular communication in cell biology : establishing a new hierarchy for interdisciplinary applications. IEEE Communications Surveys & Tutorials, 23 (3). pp. 1494-1545. doi:10.1109/COMST.2021.3066117 ISSN 1553-877X.

Billington, Karen, Halliday, Clare, Madden, Ross, Dyer, Philip, Barker, Amy, Moreira-Leite, Flavia, Carrington, Mark, Vaughan, Sue, Hertz-Fowler, Christiane, Dean, Samuel, Sunter, Jack, Wheeler, Richard and Gull, Keith (2023) Genome-wide subcellular protein map for the flagellate parasite Trypanosoma brucei. Nature microbiology, 8 . pp. 533-547. doi:10.1038/s41564-022-01295-6 ISSN 2058-5276.

Blanc-Mathieu, Romain, Verhelst, Bram, Derelle, Evelyne, Rombauts, Stephane, Bouget, François-Yves , Carré, Isabelle A., Château, Annie, Eyre-Walker, Adam, Grimsley, Nigel, Moreau, Hervé, Piégu, Benoit, Rivals, Eric , Schackwitz, Wendy, Peer, Yves van de and Piganeau, Gwenaël (2014) An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. BMC Genomics, Volume 15 . pp. 1-11. Article number 1103. doi:10.1186/1471-2164-15-1103 ISSN 1471-2164.

Blindauer, Claudia A. (2015) Advances in the molecular understanding of biological zinc transport. Chemical Communications, 51 (22). pp. 4544-4563. doi:10.1039/c4cc10174j ISSN 1359-7345.

Boden, Rich, Cleland, David, Green, Peter N., Katayama, Yoko, Uchino, Yoshihito, Murrell, J. C. (J. Colin) and Kelly, Donovan P. (2011) Phylogenetic assessment of culture collection strains of Thiobacillus thioparus, and definitive 16S rRNA gene sequences for T. thioparus, T. denitrificans, and Halothiobacillus neapolitanus. Archives of Microbiology, Vol.194 (No.3). pp. 187-195. doi:10.1007/s00203-011-0747-0 ISSN 0302-8933.

Boden, Rich, Thomas, Elizabeth, Savani, Parita, Kelly, Donovan P. and Wood, Ann P. (2008) Novel methylotrophic bacteria isolated from the River Thames (London, UK). Environmental Microbiology , Vol.10 (No.12). pp. 3225-3236. doi:10.1111/j.1462-2920.2008.01711.x ISSN 1462-2912.

(2023) Inflammasome-independent NLRP3 function enforces ATM activity in response to genotoxic stress. Life Science Alliance, 6 (4). e202201494. doi:10.26508/lsa.202201494 ISSN 2575-1077.

Boltze, Johannes and Perez-Pinzon, Miguel A. (2022) Focused update on stroke neuroimmunology : current progress in preclinical and clinical research and recent mechanistic insight. Stroke, 53 (5). pp. 1432-1437. doi:10.1161/STROKEAHA.122.039005 ISSN 0039-2499.

Borsetto, Chiara, Amos, Gregory C. A., da Rocha, Ulisses Nunes, Mitchell, Alex L., Finn, Robert D., Laidi, Rabah Forar, Vallin, Carlos, Pearce, David A., Newsham, Kevin K. and Wellington, E. M. H. (2019) Microbial community drivers of PK/NRP gene diversity in selected global soils. Microbiome, 7 (1). 78. doi:10.1186/s40168-019-0692-8 ISSN 2049-2618.

Bottomley, C., Otiende, M., Uyoga, S., Gallagher, K., Kagucia, E. W., Etyang, A. O., Mugo, D., Gitonga, J., Karanja, H., Nyagwange, J., Adetifa, I. M. O., Agweyu, A., Nokes, D. J., Warimwe, G. M. and Scott, J. A. G. (2021) Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels. Nature Communications, 12 . 6196. doi:10.1038/s41467-021-26452-z ISSN 2041-1723.

Brabec, Viktor, Howson, Suzanne E., Kaner, Rebecca A., Lord, Rianne M., Malina, Jaroslav, Phillips, Roger M., Abdallah, Qasem M. A., McGowan, Patrick C., Rodger, Alison and Scott, Peter (2013) Metallohelices with activity against cisplatin-resistant cancer cells : does the mechanism involve DNA binding? Chemical Science, Volume 4 (Number 12). pp. 4407-4416. doi:10.1039/c3sc51731d ISSN 2041-6520.

Bramham, Lawrence E., Wang, Tongtong, Higgins, Erin E., Parkin, Isobel A. P., Barker, Guy C. and Walsh, John A. (2022) Characterization and mapping of retr04, retr05 and retr06 broad-spectrum resistances to Turnip mosaic virus in Brassica juncea, and the development of robust methods for utilizing recalcitrant genotyping data. Frontiers in Plant Science, 12 . doi:10.3389/fpls.2021.787354 ISSN 1664-462X.

(2021) COVID-19 transmission dynamics underlying epidemic waves in Kenya. Science, 374 (6570). pp. 989-994. doi:10.1126/science.abk0414 ISSN 0036-8075.

Brandizzi, Federica, Frigerio, Lorenzo, Howell, Stephen H. and Schäfer, Patrick (2014) Endoplasmic reticulum : shape and function in stress translation. Frontiers in Plant Science, Volume 5 . pp. 1-2. doi:10.3389/fpls.2014.00425 ISSN 1664-462X.

Brettin, Thomas S. (Thomas Scott), Altherr, Michael R., Du, Ying, Mason, Roxie M., Friedrich, Alexandra, Potter, Laura, Langford, Chris, Keller, Thomas J., Jens, Jason, Howie, Heather, Weyand, Nathan J., Clary, Susan, Prichard, Kimberley, Wachocki, Susi, Sodergren, Erica, Dillard, Joseph P., Dillard, George, So, Magdalene and Grove Arvidson , Cindy (2005) Expression capable library for studies of Neisseria gonorrhoeae, version 1.0. BMC Microbiology, Vol.5 (No.50). doi:10.1186/1471-2180-5-50 ISSN 1471-2180.

Brignall, Ruth, Cauchy, Pierre, Bevington, Sarah L., Gorman, Bethany, Pisco, Angela O., Bagnall, James, Boddington, Christopher, Rowe, William, England, Hazel, Rich, Kevin, Schmidt, Lorraine, Dyer, Nigel P., Travis, Mark A., Ott, Sascha, Jackson, Dean A., Cockerill, Peter N. and Paszek, Pawel (2017) Integration of kinase and calcium signaling at the level of chromatin underlies inducible gene activation in T cells. The Journal of Immunology, 199 (8). pp. 2652-2667. ji1602033. doi:10.4049/jimmunol.1602033 ISSN 0022-1767.

Brodel, Andreas K., Jaramillo, Alfonso and Isalan, Mark (2017) Intracellular directed evolution of proteins from combinatorial libraries based on conditional phage replication. Nature Protocols, 12 (9). pp. 1830-1843. doi:10.1038/nprot.2017.084 ISSN 1750-2799.

Brown, Chelsea M., Corey, Robin A., Grélard, Axelle , Gao, Ya, Kyo Choi, Yeol, Luna, Emanuel, Gilleron, Martine, Destainville, Nicolas, Nigou, Jérôme, Loquet, Antoine, Fullam, Elizabeth, Im, Wonpil, Stansfeld, Phillip J. and Chavent, Matthieu (2023) Supramolecular organisation and dynamics of mannosylated phosphatidylinositol lipids in the mycobacterial plasma membrane. Proceedings of the National Academy of Sciences of the United States of America, 120 (5). e2212755120. doi:10.1073/pnas.2212755120 ISSN 0027-8424.

Brown, Jason L., Townsend, Eleanor, Short, Robert D., Williams, Craig A., Woodall, Chris, Nile, Christopher J. and Ramage, Gordon (2022) Assessing the inflammatory response to in vitro polymicrobial wound biofilms in a skin epidermis model. npj Biofilms and Microbiomes, 8 (1). 19. doi:10.1038/s41522-022-00286-z ISSN 2055-5008.

Bruce, Julie, Oyedemi, Blessing, Parsons, Nick and Harrison, Freya (2022) Phase 1 safety trial of a natural product cocktail with antibacterial activity in human volunteers. Scientific Reports, 12 (1). 19656. doi:10.1038/s41598-022-22700-4 ISSN 2045-2322.

Brumley, Douglas R., Wan, Kirsty Y., Polin, Marco and Goldstein, Raymond E. (2014) Flagellar synchronization through direct hydrodynamic interactions. eLife, Volume 3 . Article number e02750. doi:10.7554/eLife.02750 ISSN 2050-084X.

Bryan, Samantha J., Burroughs, Nigel John, Evered, Carol, Sacharz, Joanna, Nenninger, Anja, Mullineaux, Conrad W. and Spence, Edward M. (2011) Loss of the SPHF homologue Slr1768 leads to a catastrophic failure in the maintenance of thylakoid membranes in synechocystis sp. PCC 6803. PLoS One, Vol.6 (No.5). e19625. doi:10.1371/journal.pone.0019625 ISSN 1932-6203.

Bryan, Samantha J., Burroughs, Nigel John, Shevela, Dmitriy, Yu, Jianfeng, Rupprecht, Eva, Liu, Lu-Ning, Mastroianni, Giulia, Xue, Quan, Llorente-Garcia, Isabel, Leake, Mark C., Eichacker, Lutz A., Schneider, Dirk, Nixon, Peter J. and Mullineaux, Conrad W. (2014) Localisation and interactions of the Vipp1 protein in cyanobacteria. Molecular Microbiology, Volume 94 (Number 5). pp. 1179-1195. doi:10.1111/mmi.12826 ISSN 0950-382X.

(2020) Structure of dual BON-domain protein DolP identifies phospholipid binding as a new mechanism for protein localisation. eLife, 9 . e62614. doi:10.7554/eLife.62614 ISSN 2050-084X.

Bugg, Tim, Rodolis, Maria T., Mihalyi, Agnes and Jamshidi, Shirin (2016) Inhibition of phospho-MurNAc-pentapeptide translocase (MraY) by nucleoside natural product antibiotics, bacteriophage <phi>X174 lysis protein E, and cationic antibacterial peptides. Bioorganic and Medicinal Chemistry . doi:10.1016/j.bmc.2016.03.018 ISSN 0968-0896.

Burt, Alister, Cassidy, C. Keith, Stansfeld, Phillip J. and Gutsche, Irina (2021) Alternative architecture of the E. coli chemosensory array. Biomolecules, 11 (4). e495. doi:10.3390/biom11040495 ISSN 2218-273X.

Buskirk, Amanda D., Ndungo, Esther, Shimanovich, Avital A., Lam, Diana, Blackwelder, William C., Ikumapayi, Usman N., Ma, Bing, Powell, Helen, Antonio, Martin, Nataro, James P., Kaper, James B., Pasetti, Marcela F. and Huffnagle, Gary B. (2022) Mucosal immune profiles associated with diarrheal disease severity in shigella - and enteropathogenic escherichia coli-infected children enrolled in the global enteric multicenter study. mBio, 13 (4). doi:10.1128/mbio.00538-22 ISSN 2150-7511.

Byrne, Lisa, Dallman, Timothy J., Adams, Natalie, Mikhail, Amy F. W., McCarthy, Noel D. and Jenkins, Claire (2018) Highly pathogenic clone of Shiga toxin–producing Escherichia coli O157:H7, England and Wales. Emerging Infectious Diseases , 24 (12). pp. 2303-2308. doi:10.3201/eid2412.180409 ISSN 1080-6059.

Byrne-Bailey, K. G., Gaze, William H., Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2009) Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom. Antimicrobial Agents and Chemotherapy, Vol.53 (No.2). pp. 696-702. doi:10.1128/AAC.00652-07 ISSN 0066-4804.

Byrne-Bailey, K. G., Gaze, William H., Zhang, Lihong, Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2011) Integron prevalence and diversity in manured soil. Applied and Environmental Microbiology, Vol.77 (No.2). pp. 684-687. doi:10.1128/AEM.01425-10 ISSN 0099-2240.

Cabello-Yeves, Pedro J., Callieri, Cristiana, Picazo, Antonio, Schallenberg, Lena, Huber, Paula, Roda-Garcia, Juan J., Bartosiewicz, Maciej, Belykh, Olga I., Tikhonova, Irina V., Torcello-Requena, Alberto, De Prado, Paula Martin, Puxty, Richard J., Millard, Andrew D., Camacho, Antonio, Rodriguez-Valera, Francisco and Scanlan, David J. (2022) Elucidating the picocyanobacteria salinity divide through ecogenomics of new freshwater isolates. BMC Biology, 20 . 175. doi:10.1186/s12915-022-01379-z ISSN 1741-7007.

Cabello-Yeves, Pedro J., Scanlan, David J. , Callieri, Cristiana, Picazo, Antonio, Schallenberg, Lena, Huber, Paula, Roda-Garcia, Juan J., Bartosiewicz, Maciej, Belykh, Olga I., Tikhonova, Irina V., Torcello-Requena, Alberto, De Prado, Paula Martin, Millard, Andrew D., Camacho, Antonio, Rodriguez-Valera, Francisco and Puxty, Richard J. (2022) α-cyanobacteria possessing form IA RuBisCO globally dominate aquatic habitats. The ISME Journal, 16 . pp. 2421-2432. doi:10.1038/s41396-022-01282-z ISSN 1751-7362.

Calvo-Bado, Leo A., Green, Laura E., Medley, Graham, Ul-Hassan, Atiya, Buller, Nicky B., Kaler, Jasmeet, Russell, Claire L., Kennan, Ruth M., Rood, Julian I., Wellington, E. M. H. and Grogono-Thomas, Rosemary (2010) Detection and diversity of a putative novel heterogeneous polymorphic proline-glycine repeat (Pgr) protein in the footrot pathogen Dichelobacter nodosus. Veterinary Microbiology, Vol.147 (No.3-4). pp. 358-366. doi:10.1016/j.vetmic.2010.06.024 ISSN 0378-1135.

Cama, J., Leszczynski, R., Tang, P. K., Khalid, A., Lok, V., Dowson, Christopher G. and Ebata, A. (2021) To push or to pull? In a post-COVID world, supporting and incentivizing antimicrobial drug development must become a governmental priority. ACS Infectious Diseases, 7 (8). pp. 2029-2042. doi:10.1021/acsinfecdis.0c00681 ISSN 2373-8227.

Campbell, Kate, Vowinckel, Jakob, Mülleder, Michael, Malmsheimer, Silke, Lawrence, Nicola, Calvani, Enrica, Miller-Fleming, Leonor, Alam, Mohammad T., Christen, Stefan, Keller, Markus A. and Ralser, Markus (2015) Self-establishing communities enable cooperative metabolite exchange in a eukaryote. eLife, 4 . e09943. ISSN 2050-084X.

Camsund, Daniel, Jaramillo, Alfonso and Lindblad, Peter (2021) Engineering of a promoter repressed by a light-regulated transcription factor in escherichia coli. BioDesign Research, 2021 (9857418). doi:10.34133/2021/9857418 ISSN 2693-1257.

Cappuccio, Francesco and Siani, Alfonso (2020) Covid-19 and cardiovascular risk : susceptibility to infection to SARS-CoV-2, severity and prognosis of Covid-19 and blockade of the renin-angiotensin-aldosterone system. An evidence-based viewpoint. Nutrition, Metabolism and Cardiovascular Diseases, 30 (8). pp. 1227-1235. doi:10.1016/j.numecd.2020.05.013 ISSN 0939-4753.

Carbonero, Franck, Oakley, Brian B. and Purdy, Kevin J. (2014) Metabolic flexibility as a major predictor of spatial distribution in microbial communities. PLoS One, Volume 9 (Number 1). Article number e85105. doi:10.1371/journal.pone.0085105 ISSN 1932-6203.

Carroll, Daire, Holden, Nicola, Gifford, Miriam L. and Dupuy, Lionel X. (2020) Framework for quantification of the dynamics of root colonization by pseudomonas fluorescens isolate SBW25. Frontiers in Microbiology, 11 . doi:10.3389/fmicb.2020.585443 ISSN 1664-302X.

Casillo, Angela, Fabozzi, Antonio, Russo Krauss, Irene, Parrilli, Ermenegilda, Biggs, Caroline I., Gibson, Matthew I., Lanzetta, Rosa, Appavou, Marie-Sousai, Radulescu, Aurel, Tutino, Maria L., Paduano, Luigi and Corsaro, Maria M. (2021) Physicochemical approach to understanding the structure, conformation, and activity of mannan polysaccharides. Biomacromolecules, 22 (4). pp. 1445-1457. doi:10.1021/acs.biomac.0c01659 ISSN 1525-7797.

Castel, Baptiste, Fairhead, Sebastian, Furzer, Oliver J., Redkar, Amey, Wang, Shanshan, Cevik, Volkan, Holub, E. B. and Jones, Jonathan D. G. (2021) Evolutionary trade‐offs at the Arabidopsis WRR4A resistance locus underpin alternate Albugo candida race recognition specificities. The Plant Journal, 107 (5). pp. 1490-1502. doi:10.1111/tpj.15396 ISSN 0960-7412.

Castro, Thiago L. P., Seyffert, Nubia, Ramos, Rommel T. J., Barbosa, Silvanira, Carvalho, Rodrigo D. O., Pinto, Anne Cybelle, Carneiro, Adriana Ribeiro, Silva, Wanderson Marques, Pacheco, Luis G. C., Downson, Christopher G., Schneider, Maria P. C., Miyoshi, Anderson, Azevedo, V. (Vasco) and Silva, Artur (2013) Ion torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method. Microbial Biotechnology, Volume 6 (Number 2). pp. 168-177. doi:10.1111/1751-7915.12020 ISSN 1751-7907.

Catherwood, Anita C., Lloyd, Adrian J., Tod, Julie A., Chauhan, Smita, Slade, Susan E., Walkowiak, Grzegorz P., Galley, Nicola F., Punekar, Avinash S., Smart, Katie, Rea, Dean, Evans, Neil D., Chappell, Michael J., Roper, David I. and Dowson, Christopher G. (2020) Substrate and stereochemical control of peptidoglycan cross-linking by transpeptidation by Escherichia coli PBP1B. Journal of the American Chemical Society, 142 (11). pp. 5034-5048. doi:10.1021/jacs.9b08822 ISSN 0002-7863.

Cavaliere, Matteo, Feng, Song, Soyer, Orkun S. and Jiménez, José I. (2017) Cooperation in microbial communities and their biotechnological applications. Environmental Microbiology, 19 (8). pp. 2949-2963. doi:10.1111/1462-2920.13767 ISSN 1462-2912.

Cavallaro, Massimo, Coelho, Juliana, Ready, Derren, Decraene, Valerie, Lamagni, Theresa, McCarthy, Noel D., Todkill, Daniel and Keeling, Matt J. (2022) Cluster detection with random neighbourhood covering : application to invasive Group A Streptococcal disease. PLoS Computational Biology, 18 (11). e1010726. doi:10.1371/journal.pcbi.1010726 ISSN 1553-7358.

Cevik, Volkan, Boutrot, Freddy, Apel, Wiebke, Robert-Seilaniantz, Alexandre, Furzer, Oliver J., Redkar, Amey, Castel, Baptiste, Kover, Paula, Prince, David C., Holub, E. B. and Jones, Jonathan D. G. (2019) Transgressive segregation reveals mechanisms of Arabidopsis immunity to Brassica-infecting races of white rust (Albugo candida). Proceedings of the National Academy of Sciences, 116 (7). pp. 2767-2773. doi:10.1073/pnas.1812911116 ISSN 0027-8424.

(2022) Comparative genomics of disease and carriage serotype 1 pneumococci. Genome Biology and Evolution, 14 (4). evac052. doi:10.1093/gbe/evac052 ISSN 1759-6653.

Challis, Gregory L. (2008) Mining microbial genomes for new natural products and biosynthetic pathways. Microbiology, Vol.154 (No.6). pp. 1555-1569. doi:10.1099/mic.0.2008/018523-0 ISSN 1350-0872.

Chamberlain, Kerry L., Marshall, Richard S., Jolliffe, Nicholas A., Frigerio, Lorenzo, Ceriotti, Aldo, Lord, Mike and Roberts, L. M. (Lynne M.) (2008) Ricin B chain targeted to the endoplasmic reticulum of tobacco protoplasts is degraded by a CDC48- and vacuole-independent mechanism. Journal of Biological Chemistry, Vol.283 (No.48). pp. 33276-33286. doi:10.1074/jbc.M805222200 ISSN 0021-9258.

Chan, Helena, Taib, Najwa, Gilmore, Michael C., Mohamed, Ahmed M. T., Hanna, Kieran, Luhur, Johana, Nguyen, Hieu, Hafiz, Elham, Cava, Felipe, Gribaldo, Simonetta, Rudner, David and Rodrigues, Christopher D. A. (2022) Genetic screens identify additional genes implicated in envelope remodeling during the engulfment stage of Bacillus subtilis sporulation. mBio, 13 (5). e01732--22. doi:10.1128/mbio.01732-22 ISSN 2150-7511.

Chan, Jacqueline, Millard, Andrew D., Mann, Nicholas H. and Schäfer, Hendrik (2014) Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes. Frontiers in Microbiology, Volume 5 . Article number 506. doi:10.3389/fmicb.2014.00506 ISSN 1664-302X.

Chan, Yi-Wah, Millard, Andrew D., Wheatley, Peter J., Holmes, Antony B., Mohr, Remus, Whitworth, Anna L., Mann, Nicholas H., Larkum, Anthony W. D., Hess, Wolfgang R., Scanlan, David J. and Clokie, Martha R. J. (2015) Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacteriumAcaryochloris marina. Environmental Microbiology, 17 (11). pp. 4239-4252. doi:10.1111/1462-2920.12735 ISSN 1462-2912.

Chan, Yi-Wah, Millard, Andrew D., Wheatley, Peter J., Holmes, Antony B., Mohr, Remus, Whitworth, Anna L., Mann, Nicholas H., Larkum, Anthony W. D., Hess, Wolfgang R., Scanlan, David J. and Clokie, Martha R. J. (2015) Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacterium Acaryochloris marina. Environmental Microbiology, 17 (11). pp. 4239-4252. doi:10.1111/1462-2920.12735 ISSN 1462-2912.

Chen, Jing and Gu, Ji-Dong (2017) Faunal burrows alter the diversity, abundance, and structure of AOA, AOB, anammox and n-damo communities in coastal mangrove sediments. Microbial Ecology, 74 (1). pp. 140-156. doi:10.1007/s00248-017-0939-5 ISSN 0095-3628.

Chen, Jing, Wade, Matthew J., Dolfing, Jan and Soyer, Orkun S. (2019) Increasing sulfate levels show a differential impact on synthetic communities comprising different methanogens and a sulfate reducer. Journal of The Royal Society Interface, 16 (154). 20190129. doi:10.1098/rsif.2019.0129 ISSN 1742-5689.

Chen, Yin, McAleer, Kathryn L. and Murrell, J. C. (J. Colin) (2010) Monomethylamine as a nitrogen source for a nonmethylotrophic bacterium, Agrobacterium tumefaciens. Applied and Environmental Microbiology, Vol.76 (No.12). pp. 4102-4104. doi:10.1128/AEM.00469-10 ISSN 0099-2240.

Chen, Yin, Patel, Nisha A., Crombie, Andrew, Scrivens, James H. and Murrell, J. C. (J. Colin) (2011) Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. Proceedings of the National Academy of Sciences, Vol.108 (No.43). pp. 17791-17796. doi:10.1073/pnas.1112928108 ISSN 0027-8424.

Cherkasov, Nikolay, Ibhadon, A. O. and Fitzpatrick, P. (2015) A review of the existing and alternative methods for greener nitrogen fixation. Chemical Engineering and Processing: Process Intensification, 90 . pp. 24-33. doi:10.1016/j.cep.2015.02.004 ISSN 0255-2701.

Christie-Oleza, Joseph Alexander and Armengaud, Jean (2010) In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry : the Ruegeria pomeroyi DSS-3 case-study. Marine Drugs, Volume 8 (Number 8). pp. 2223-2239. doi:10.3390/md8082223 ISSN 1660-3397.

Christie-Oleza, Joseph Alexander, Armengaud, Jean, Guerin, Philippe and Scanlan, David J. (2015) Functional distinctness in the exoproteomes of marine Synechococcus. Environmental Microbiology, 17 (10). pp. 3781-3794. doi:10.1111/1462-2920.12822 ISSN 1462-2912.

Christie-Oleza, Joseph Alexander, Miotello, Guylaine and Armengaud, Jean (2012) High-throughput proteogenomics of Ruegeria pomeroyi : seeding a better genomic annotation for the whole marine Roseobacter clade. BMC Genomics, Volume 13 (Number 1). Article number 73. doi:10.1186/1471-2164-13-73 ISSN 1471-2164.

Christie-Oleza, Joseph Alexander, Nogales, Balbina, Martín-Cardona, Cèlia, Lanfranconi, Mariana P., Albertí, Sebastián, Lalucat, Jorge and Bosch, Rafael (2008) ISPst9, an ISL3-like insertion sequence from Pseudomonas stutzeri AN10 involved in catabolic gene inactivation. International Microbiology, Volume 11 (Number 2). pp. 101-110. doi:10.2436/20.1501.01.49 ISSN 1139-6709.

Christie-Oleza, Joseph Alexander, Scanlan, David J. and Armengaud, Jean (2015) “You produce while I clean up”, a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions. Proteomics, 15 (20). pp. 3454-3462. doi:10.1002/pmic.201400562 ISSN 1615-9853.

Christie-Oleza, Joseph Alexander, Sousoni, Despoina, Lloyd, Matthew, Armengaud, Jean and Scanlan, David J. (2017) Nutrient recycling facilitates long-term stability of marine microbial phototroph–heterotroph interactions. Nature microbiology, 2 . 17100. doi:10.1038/nmicrobiol.2017.100 ISSN 2058-5276.

Cizmeci, Deniz, Dempster, Emma L., Champion, Olivia L., Wagley, Sariqa, Akman, Ozgur E., Prior, Joann L., Soyer, Orkun S., Mill, Jonathan and Titball, Richard W. (2016) Mapping epigenetic changes to the host cell genome induced by Burkholderia pseudomallei reveals pathogen-specific and pathogen-generic signatures of infection. Scientific Reports, 6 . 30861. doi:10.1038/srep30861 ISSN 2045-2322.

Clarkson, John P., Staveley, John, Phelps, Kath, Young, Caroline and Whipps, J. M. (2003) Ascospore release and survival in Sclerotinia sclerotiorum. Mycological Research, Vol.10 (No.2). pp. 213-222. doi:10.1017/S0953756203007159 ISSN 0953-7562.

Clement, Mathew, Knezevic, L., Dockree, Tamsin, McLaren, J. E., Ladell, Kristin, Miners, K. L., Llewelly-Lacey, S., Rubina, A., Francis, O., Cole, D. K., Sewell, A. K., Bridgeman, J. S., Price, David A., van den Berg, H. A. and Wooldridge, Linda (2021) CD8 coreceptor-mediated focusing can reorder the agonist hierarchy of peptide ligands recognized via the T cell receptor. Proceedings of the National Academy of Sciences of the United States of America, 118 (29). e2019639118. doi:10.1073/pnas.2019639118 ISSN 0027-8424.

Clifton, Rachel, Giebel, Katharina, Liu, Nicola, Purdy, Kevin J. and Green, Laura E. (2019) Sites of persistence of Fusobacterium necrophorum and Dichelobacter nodosus: a paradigm shift in understanding the epidemiology of footrot in sheep. Scientific Reports, 9 (1). 14429. doi:10.1038/s41598-019-50822-9 ISSN 2045-2322.

Clifton, Rachel, Green, Laura E. and Purdy, Kevin J. (2018) Development and validation of a multiple locus variable number tandem repeat analysis (MLVA) scheme for Fusobacterium necrophorum. Veterinary Microbiology, 213 . pp. 108-113. doi:10.1016/j.vetmic.2017.11.017 ISSN 0378-1135.

Clokie, Martha R. J., Millard, Andrew D., Mehta, Jaytry Y. and Mann, Nicholas H. (2006) Virus isolation studies suggest short-term variations in abundance in natural cyanophage populations of the Indian Ocean. Journal of the Marine Biological Association of the United Kingdom, Vol.86 (No.3). pp. 499-505. doi:10.1017/S0025315406013415 ISSN 0025-3154.

Cody, Alison J., McCarthy, Noel D., Bray, James E., Wimalarathna, Helen M. L., Colles, Frances M., van Rensburg, Melissa J., Dingle, Kate E., Waldenström, Jonas and Maiden, Martin C. J. (2015) Wild bird-associated Campylobacter jejuni isolates are a consistent source of human disease, in Oxfordshire, United Kingdom. Environmental Microbiology Reports, 7 (5). pp. 782-788. doi:10.1111/1758-2229.12314 ISSN 1758-2229.

Congdon, Thomas R., Dean, Bethany T., Kasperczak-Wright, James, Biggs, Caroline I., Notman, Rebecca and Gibson, Matthew I. (2015) Probing the biomimetic ice nucleation inhibition activity of poly(vinyl alcohol) and comparison to synthetic and biological polymers. Biomacromolecules, 16 (9). pp. 2820-2826. 150810155641002. doi:10.1021/acs.biomac.5b00774 ISSN 1525-7797.

Conley, Michaela J., Short, Judith M., Burns, Andrew M., Streetley, James, Hutchings, Joshua, Bakker, Saskia, Power, B. Joanne, Jaffery, Hussain, Haney, Joanne, Zanetti, Giulia, Murcia, Pablo R., Stewart, Murray, Fearns, Rachel, Vijayakrishnan, Swetha and Bhella, David (2022) Helical ordering of envelope‐associated proteins and glycoproteins in respiratory syncytial virus. The EMBO Journal, 41 (3). e109728. doi:10.15252/embj.2021109728 ISSN 0261-4189.

Connelly, Erin, Del Genio, Charo I., Harrison, Freya and Nacy, Carol A. (2020) Data mining a medieval medical text reveals patterns in ingredient choice that reflect biological activity against infectious agents. mBio, 11 (1). e03136-19. doi:10.1128/mBio.03136-19 ISSN 2150-7511.

(2016) What’s in a name? Species-wide whole-genome sequencing resolves invasive and noninvasive lineages of salmonella enterica serotype Paratyphi B. mBio, 7 (4). e00527-16. doi:10.1128/mBio.00527-16 ISSN 2150-7511.

Cook, Sarah, Price, Oliver, King, Andrew, Finnegan, Chris, van Egmond, Roger, Schäfer, Hendrik, Pearson, Jonathan M., Abolfathi, Soroush and Bending, G. D. (2020) Bedform characteristics and biofilm community development interact to modify hyporheic exchange. Science of The Total Environment, 749 . 141397. doi:10.1016/j.scitotenv.2020.141397 ISSN 0048-9697.

Corey, Robin A., Harrison, Noah, Stansfeld, Phillip J., Sansom, Mark S. P. and Duncan, Anna L. (2022) Cardiolipin, and not monolysocardiolipin, preferentially binds to the interface of complexes III and IV. Chemical Science, 13 (45). pp. 13489-13498. doi:10.1039/d2sc04072g ISSN 2041-6520.

(2022) Molecular and cellular insight into Escherichia coli SslE and its role during biofilm maturation. npj Biofilms and Microbiomes, 8 (1). 9. doi:10.1038/s41522-022-00272-5 ISSN 2055-5008.

Cosgriff, Sarah, Chintakayala, Kiran, Chim, Ya Tsz A., Chen, Xinyong, Allen, Stephanie (Researcher in Pharmacy), Lovering, Andrew L. and Grainger, David C. (2010) Dimerization and DNA-dependent aggregation of the Escherichia coli nucleoid protein and chaperone CbpA. Molecular Microbiology, Volume 77 (Number 5). pp. 1289-1300. doi:10.1111/j.1365-2958.2010.07292.x ISSN 0950-382X.

Couper, Keith, Taylor-Phillips, Sian, Grove, Amy L., Freeman, Karoline, Osokogu, Osemeke, Court, Rachel A., Mehrabian, Amin, Morley, Peter T., Nolan, Jerry P., Soar, Jasmeet and Perkins, Gavin D. (2020) COVID-19 in cardiac arrest and infection risk to rescuers : a systematic review. Resuscitation, 151 . pp. 59-66. doi:10.1016/j.resuscitation.2020.04.022 ISSN 0300-9572.

Courtenay, Orin, Reilly, L. A., Keeling, Matthew James, Sweeney, F. P., Wellington, E. M. H., Macdonald, David W., Delahay, Richard J., Wilson, G. J. and Cheeseman, C. L. (2007) Performance of an environmental test to detect Mycobacterium bovis infection in badger social groups. Veterinary Record, The, Vol.161 . pp. 817-818. doi:10.1136/vr.161.24.817 ISSN 0042-4900.

Couto, Daniel, Niebergall, Roda, Liang, Xiangxiu, Bücherl, Christoph A., Sklenar, Jan, Macho, Alberto P., Ntoukakis, Vardis, Derbyshire, Paul, Altenbach, Denise, Maclean, Dan, Robatzek, Silke, Uhrig, Joachim, Menke, Frank, Zhou, Jian-Min and Zipfel, Cyril (2016) The Arabidopsis protein phosphatase PP2C38 negatively regulates the central immune kinase BIK1. PLoS Pathogens, 12 (8). e1005811. doi:10.1371/journal.ppat.1005811 ISSN 1553-7374.

Couves, Emma C., Gardner, Scott, Voisin, Tomas B., Bickel, Jasmine K., Stansfeld, Phillip J., Tate, Edward W. and Bubeck, Doryen (2023) Structural basis for membrane attack complex inhibition by CD59. Nature Communications, 14 (1). 890. doi:10.1038/s41467-023-36441-z ISSN 2041-1723.

Coverdale, James P. C., Guy, Collette S., Bridgewater, Hannah E., Needham, Russell J., Fullam, Elizabeth and Sadler, Peter J. (2021) Osmium–arene complexes with high potency towards Mycobacterium tuberculosis. Metallomics, 13 (4). mfab007. doi:10.1093/mtomcs/mfab007 ISSN 1756-5901.

Cox, M. J. and Medley, Graham (2003) Serological survey of anti-group A rotavirus IgM in UK adults. Epidemiology and Infection, Vol.131 (No.1). pp. 719-726. doi:10.1017/S0950268803008720 ISSN 0950-2688.

Cox, Michael J., Schäfer, Hendrik, Nightingale, Phillip D., McDonald, Ian R. and Murrell, J. C. (J. Colin) (2012) Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters. FEMS Microbiology Letters, Vol.334 (No.2). pp. 111-118. doi:10.1111/j.1574-6968.2012.02624.x ISSN 03781097.

Crellen, Thomas, Pi, Li, Davis, Emma L., Pollington, Timothy M., Lucas, Tim C. D., Ayabina, Diepreye, Borlase, Anna, Toor, Jaspreet, Prem, Kiesha, Medley, Graham F., Klepac, Petra and Hollingsworth, T. Déirdre (2021) Dynamics of SARS-CoV-2 with waning immunity in the UK population. Philosophical Transactions of the Royal Society B: Biological Sciences, 376 (1829). doi:10.1098/rstb.2020.0274 ISSN 0962-8436.

Cremin, Kelsey , Duxbury, Sarah J. N., Rosko, Jerko and Soyer, Orkun S. (2023) Formation and emergent dynamics of spatially organized microbial systems. Interface Focus, 13 (2). 20220062. doi:10.1098/rsfs.2022.0062 ISSN 2042-8898.

Cremin, Kelsey , Jones, Bryn, Teahan, James, Meloni, Gabriel N., Perry, David, Zerfass, Christian, Asally, Munehiro, Soyer, Orkun S. and Unwin, Patrick R. (2020) Scanning ion conductance microscopy reveals differences in the ionic environments of gram-positive and negative bacteria. Analytical Chemistry, 92 (24). pp. 16024-16032. doi:10.1021/acs.analchem.0c03653 ISSN 0003-2700.

Cresswell, R., Augustin, D., Bouros, I., Farm, H. J., Miao, S., Ahern, A., Robinson, M., Lemenuel-Diot, A., Gavaghan, D. J., Lambert, B. and Thompson, Robin N. (2022) Heterogeneity in the onwards transmission risk between local and imported cases affects practical estimates of the time-dependent reproduction number. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 380 (2233). 20210308. doi:10.1098/rsta.2021.0308 ISSN 1364-503X.

Criscuolo, Alexis, Issenhuth-Jeanjean, Sylvie, Didelot, Xavier, Thorell, Kaisa, Hale, James, Parkhill, Julian, Thomson, Nicholas R., Weill, François-Xavier, Falush, Daniel and Brisse, Sylvain (2019) The speciation and hybridization history of the genus Salmonella. Microbial Genomics, 5 (8). doi:10.1099/mgen.0.000284 ISSN 2057-5858.

Crispin, Max, Chang, Veronica T., Harvey, David J., Dwek, Raymond A., Evans, Edward J., Stuart, David I., Jones, E. Yvonne, Lord, Mike, Spooner, Robert A. and Davis, Simon J. (2009) A human embryonic kidney 293T cell line mutated at the Golgi -mannosidase II locus. Journal of Biological Chemistry . doi:10.1074/jbc.M109.006254 ISSN 0021-9258.

Crispin, Max, Harvey, David J., Bitto, David, Bonomelli, Camille, Edgeworth, Matthew, Scrivens, James H., Huiskonen, Juha T. and Bowden, Thomas A. (2014) Structural plasticity of the Semliki Forest virus glycome upon interspecies transmission. Journal of proteome research, Volume 13 (Number 3). pp. 1702-1712. doi:10.1021/pr401162k ISSN 1535-3893.

Crispin, Max, Harvey, David J., Bitto, David, Bonomelli, Camille, Edgeworth, Matthew, Scrivens, James H., Huiskonen, Juha T. and Bowden, Thomas A. (2014) Structural plasticity of the semliki forest virus glycome upon interspecies transmission. Journal of proteome research, Volume 13 (Number 3). pp. 1702-1712. doi:10.1021/pr401162k ISSN 1535-3893.

Cui, L. L., Boltze, Johannes and Zhang, Y. (2021) Positive LGI1 antibodies in CSF and relapse relate to worse outcome in anti-LGI1 encephalitis. Frontiers in Immunology, 12 . 772096. doi:10.3389/fimmu.2021.772096 ISSN 1664-3224.

Cunliffe, Michael, Whiteley, Andrew S., Newbold, Lindsay, Oliver, Anna, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2009) Comparison of bacterioneuston and bacterioplankton dynamics during a phytoplankton bloom in a fjord mesocosm. Applied and Environmental Microbiology, Vol.75 (No.22). pp. 7173-7181. doi:10.1128/AEM.01374-09 ISSN 0099-2240.

Curran, Fraser M., Bhalraam, U., Mohan, Mohapradeep, Singh, Jagdeep S., Anker, Stefan D., Dickstein, Kenneth, Doney, Alexander S., Filippatos, Gerasimos, George, Jacob, Metra, Marco, Ng, Leong L., Palmer, Colin N., Samani, Nilesh J., Veldhuisen, Dirk J., Voors, Adriaan A., Lang, Chim C. and Mordi, Ify R. (2021) Neutrophil‐to‐lymphocyte ratio and outcomes in patients with new‐onset or worsening heart failure with reduced and preserved ejection fraction. ESC Heart Failure, 8 (4). pp. 3168-3179. doi:10.1002/ehf2.13424 ISSN 20555822.

Daga, Sunil, Babu, Adarsh, Khovanova, Natasha and Higgins, Rob (2021) Defining clinically pathogenic HLA-specific antibodies - granular details in characteristics in pre and early time following HLA-antibody incompatible kidney transplantation. OBM Transplantation, 5 (3). 20. doi:10.21926/obm.transplant.2103151 ISSN 25775820.

Dankwa, Emmanuelle A., Lambert, Sébastien, Hayes, Sarah, Thompson, Robin N. and Donnelly, Christl A. (2022) Stochastic modelling of African swine fever in wild boar and domestic pigs : epidemic forecasting and comparison of disease management strategies. Epidemics, 40 . 100622. doi:10.1016/j.epidem.2022.100622 ISSN 1755-4365.

Darlington, Alexander P. S., Kim, Juhyun, Jiménez, José I. and Bates, Declan (2018) Dynamic allocation of orthogonal ribosomes facilitates uncoupling of co-expressed genes. Nature Communications, 9 (1). 695. doi:10.1038/s41467-018-02898-6 ISSN 2041-1723.

Davies, Sarah K., Fearn, Sarah, Allsopp, Luke P., Harrison, Freya, Ware, Ecaterina, Diggle, Stephen P., Filloux, Alain, McPhail, David S. and Bundy, Jacob G. (2017) Visualizing antimicrobials in bacterial biofilms : three-dimensional biochemical imaging using TOF-SIMS. mSphere, 2 (4). 2:e00211-17. doi:10.1128/mSphere.00211-17 ISSN 2379-5042.

Dedman, Craig J., King, Aaron M, Christie-Oleza, Joseph Alexander and Davies, Gemma-Louise (2021) Environmentally relevant concentrations of titanium dioxide nanoparticles pose negligible risk to marine microbes. Environmental Science: Nano, 8 (5). pp. 1236-1255. doi:10.1039/d0en00883d ISSN 2051-8153.

Delattre, Hadrien, Chen, Jing, Wade, Matthew J. and Soyer, Orkun S. (2020) Thermodynamic modelling of synthetic communities predicts minimum free energy requirements for sulfate reduction and methanogenesis. Journal of The Royal Society Interface, 17 (166). 20200053. doi:10.1098/rsif.2020.0053 ISSN 1742-5689.

Deme, Justin C., Johnson, Steven, Vickery, Owen N., Muellbauer, Amy, Monkhouse, Holly, Griffiths, Thomas, Hennell James, Rory, Berks, Ben C., Coulton, James W., Stansfeld, Phillip J. and Lea, Susan M. (2020) Structures of the stator complex that drives rotation of the bacterial flagellum. Nature microbiology, 5 . pp. 1553-1564. doi:10.1038/s41564-020-0788-8 ISSN 2058-5276.

Dhaonoa, Gurneet K., Kushnir, Inbar, Qimron, Udi, Roper, David I. and Sagona, Antonia P. (2022) Investigating the effect of bacteriophages on bacterial FtsZ localisation. Frontiers in Cellular and Infection Microbiology-Microbiome in Health and Disease, 12 . 863712. doi:10.3389/fcimb.2022.863712 ISSN 2235-2988.

Dhok, Shivani, Chouhan, Lokendra, Noel, Adam and Sharma, Prabhat (2022) Cooperative molecular communication in drift-induced diffusive cylindrical channel. IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, 8 (1). pp. 44-55. doi:10.1109/TMBMC.2021.3089939 ISSN 2332-7804.

Didelot, Xavier, Bowden, Rory, Street, Teresa, Golubchik, Tanya, Spencer, Chris, McVean, Gil, Sangal, Vartul, Anjum, Muna F., Achtman, Mark, Falush, Daniel and Donnelly, Peter (2011) Recombination and population structure in salmonella enterica. PLoS Genetics, Volume 7 (Number 7). Article number e1002191. doi:10.1371/journal.pgen.1002191 ISSN 1553-7390.

Didelot, Xavier, Urwin, Rachel, Maiden, Martin C. J. and Falush, Daniel (2009) Genealogical typing of Neisseria meningitidis. Microbiology, Vol.15 (No.10). pp. 3176-3186. doi:10.1099/mic.0.031534-0 ISSN 1350-0872.

Dimmock, N. J. (2021) COVID-19 infection, vaccines, and immunity—the antibody response requires detailed analysis. Microbiology Research, 12 (3). pp. 626-629. doi:10.3390/microbiolres12030044 ISSN 2036-7481.

Dimmock, N. J. and Easton, Andrew J. (2023) Understanding the SARS-CoV-2 virus neutralizing antibody response : lessons to be learned from HIV and respiratory syncytial virus. Viruses , 15 (2). 504. doi:10.3390/v15020504 ISSN 1999-4915.

Dimude, Juachi U., Stein, Monja, Andrzejewska, Ewa E., Khalifa, Mohammad S., Gajdosova, Alexandra, Retkute, Renata, Skovgaard, Ole and Rudolph, Christian J. (2018) Origins left, right, and centre : increasing the number of initiation sites in the escherichia coli chromosome. Genes, 9 (8). 376. doi:10.3390/genes9080376 ISSN 2073-4425.

Dingle, Kate E., Didelot, Xavier, Quan, T. Phuong, Eyre, David W., Stoesser, Nicole, Marwick, Charis A., Coia, John, Brown, Derek, Buchanan, Sarah, Ijaz, Umer Z., Goswami, Cosmika, Douce, Gill, Fawley, Warren N., Wilcox, Mark H., Peto, Timothy E. A., Walker, A. Sarah, Crook, Derrick W. and Keim, Paul (2019) A role for tetracycline selection in recent evolution of agriculture-associated clostridium difficile PCR ribotype 078. mBio, 10 (2). pp. 1-19. e02790. doi:10.1128/mBio.02790-18 ISSN 2150-7511.

Dingle, Kate E., Freeman, Jane, Didelot, Xavier, Quan, T. Phuong, Eyre, David W., Swann, Jeremy, Spittal, William D., Clark, Emma V., Jolley, Keith A., Walker, A. Sarah, Wilcox, Mark H. and Crook, Derrick W. (2023) Penicillin binding protein substitutions cooccur with fluoroquinolone resistance in epidemic lineages of multidrug-resistant Clostridioides difficile. mBio . doi:10.1128/mbio.00243-23 ISSN 2150-7511. (In Press)

Diniz-da-Costa, Maria, Kong, Chow-Seng, Fishwick, Katherine, Rawlings, Thomas, Brighton, Paul (Paul J.), Hawkes, Amelia, Odendaal, Joshua, Quenby, Siobhan, Ott, Sascha, Lucas, Emma S., Vrljicak, Pavle and Brosens, Jan J. (2021) Characterization of highly proliferative decidual precursor cells during the window of implantation in human endometrium. Stem Cells, 39 (8). pp. 1067-1080. doi:10.1002/stem.3367 ISSN 1066-5099.

Ditlev, Jonathon A., Vega, Anthony R., Köster, Darius Vasco, Su, Xiaolei, Tani, Tomomi, Lakoduk, Ashley M., Vale, Ronald D., Mayor, Satyajit, Jaqaman, Khuloud and Rosen, Michael K. (2019) A composition-dependent molecular clutch between T cell signaling condensates and actin. eLife, 8 . e42695 . doi:10.7554/eLife.42695 ISSN 2050-084X.

Diviney, Sinéad, Tuplin, Andrew, Struthers, Madeleine, Armstrong, Victoria, Elliott, Richard M., Simmonds, Peter and Evans, David J. (2008) A hepatitis C virus cis-acting replication element forms a long-range RNA-RNA interaction with upstream RNA sequences in NS5B. Journal of Virology, Vol.82 (No.18). pp. 9008-9022. doi:10.1128/JVI.02326-07 ISSN 0022-538X.

Dixon, Ann M. and Roy, Syamal (2019) Role of membrane environment and membrane-spanning protein regions in assembly and function of the Class II Major Histocompatibility complex. Human Immunology, 80 (1). pp. 5-14. doi:10.1016/j.humimm.2018.07.004 ISSN 0198-8859.

Dixon, Emma V., Claridge, Jolyon K., Harvey, David J., Baruah, Kavitha, Yu, Xiaojie, Vesiljevic, Snezana, Mattick, Susan, Pritchard, Laura K., Krishna, Benjamin, Scanlan, Christopher N., Schnell, Jason R., Higgins, Matthew K., Zitzmann, Nicole and Crispin, Max (2014) Fragments of bacterial endoglycosidase S and immunoglobulin G reveal subdomains of each that contribute to deglycosylation. Journal of Biological Chemistry, Volume 289 (Number 20). pp. 13876-13889. doi:10.1074/jbc.M113.532812 ISSN 0021-9258.

Docherty, Sophia J., Davis, Oliver S. P., Haworth, Claire M. A., Plomin, Robert, D'Souza, Ursula and Mill, Jonathan (2012) A genetic association study of DNA methylation levels in the DRD4 gene region finds associations with nearby SNPs. Behavioral and Brain Functions, Volume 8 . Article number 31. doi:10.1186/1744-9081-8-31 ISSN 1744-9081.

Dong, Haohao, Xiang, Quanju, Gu, Yinghong, Wang, Zhongshan, Paterson, Neil G., Stansfeld, Phillip J., He, Chuan, Zhang, Yizheng, Wang, Wenjian and Dong, Changjiang (2014) Structural basis for outer membrane lipopolysaccharide insertion. Nature, 511 (7507). pp. 52-56. doi:10.1038/nature13464 ISSN 0028-0836.

Dorati, Federico, Barrett, Glyn, Sanchez-Contreras, Maria, Arseneault, Tanya, José, Mateo, Studholme, David, Murillo, Jesús, Caballero, Primitivo, Waterfield, Nicholas R., Arnold, Dawn, Shaw, Liz and Jackson, Robert (2018) Coping with environmental eukaryotes : identification of Pseudomonas syringae genes during the interaction with alternative hosts or predators. Microorganisms, 6 (2). 32. doi:10.3390/microorganisms6020032 ISSN 2076-2607.

Dorp, Lucy van, Wang, Qi, Shaw, Liam P., Acman, Mislav, Brynildsrud, Ola B., Eldholm, Vegard, Wang, Ruobing, Gao, Hua, Yin, Yuyao, Chen, Hongbin, Ding, Chuling, Farrer, Rhys A., Didelot, Xavier, Balloux, Francois and Wang, Hui (2019) Rapid phenotypic evolution in multidrug-resistant Klebsiella pneumoniae hospital outbreak strains. Microbial Genomics, 5 (4). doi:10.1099/mgen.0.000263 ISSN 2057-5858.

(2020) Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology, 11 . 567431. doi:10.3389/fmicb.2020.567431 ISSN 1664-302X.

Doré, Hugo, Guyet, Ulysse, Leconte, Jade, Farrant, Gregory K., Alric, Benjamin, Ratin, Morgane, Ostrowski, Martin, Ferrieux, Mathilde, Brillet-Guéguen, Loraine, Hoebeke, Mark, Siltanen, Jukka, Corguillé, Gildas Le, Corre, Erwan, Wincker, Patrick, Scanlan, David J. , Eveillard, Damien, Partensky, Frédéric and Garczarek, Laurence (2023) Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies. ISME Journal, 17 . 720-732 . doi:10.1038/s41396-023-01386-0 ISSN 1751-7362.

Doré, Hugo, Leconte, Jade, Guyet, Ulysse, Breton, Solène, Farrant, Gregory K., Demory, David, Ratin, Morgane, Hoebeke, Mark, Corre, Erwan, Pitt, Frances Diana, Ostrowski, Martin, Scanlan, David J. , Partensky, Frédéric, Six, Christophe, Garczarek, Laurence and Blanchard, Jeffrey Lawrence (2022) Global phylogeography of marine synechococcus in coastal areas reveals strong community shifts. mSystems, 7 (6). doi:10.1128/msystems.00656-22 ISSN 2379-5077.

Dow, Claire E., Berg, Hugo van den, Roper, David I. and Rodger, Alison (2015) Biological insights from a simulation model of the critical FtsZ accumulation required for prokaryotic cell division. Biochemistry, 54 (24). pp. 3803-3813. doi:10.1021/acs.biochem.5b00261 ISSN 0006-2960.

Dowson, Amanda J., Lloyd, Adrian J., Cuming, Andrew C., Roper, David I., Frigerio, Lorenzo and Dowson, Christopher G. (2022) Plant peptidoglycan precursor biosynthesis : conservation between moss chloroplasts and Gram-negative bacteria. Plant Physiology, 190 (1). pp. 165-179. doi:10.1093/plphys/kiac176 ISSN 1532-2548.

Drayson, Mark T., Bowcock, Stella, Planche, Tim, Iqbal, Gulnaz, Pratt, Guy, Yong, Kwee, Wood, Jill, Raynes, Kerry, Higgins, Helen, Dawkins, Bryony, Meads, David, Hulme, Claire T., Whittaker, Anna C., Hawkey, Peter, Low, Eric and Dunn, Janet A. (2019) Prophylactic levofloxacin to prevent infections in newly diagnosed symptomatic myeloma: the TEAMM RCT. Health Technology Assessment, 23 (62). pp. 1-94. doi:10.3310/hta23620 ISSN 2046-4924.

Drenichev, Mikhail S., Bennett, Mark, Novikov, Roman A., Mansfield, John, Smirnoff, Nick, Grant, Murray R. and Mikhailov, Sergey N. (2019) A role for 3′-O-β-D-ribofuranosyladenosine in altering plant immunity. Phytochemistry Letters, 157 . pp. 128-134. doi:10.1016/j.phytochem.2018.10.016 ISSN 1874-3900.

Drevinek, Pavel, Baldwin, Adam, Dowson, Christopher G. and Mahenthiralingam, Eshwar (2008) Diversity of the parB and repA genes of the Burkholderia cepacia complex and their utility for rapid identification of Burkholderia cenocepacia. BMC Microbiology, Vol.8 (No.44). doi:10.1186/1471-2180-8-44 ISSN 1471-2180.

Drummond, Sheona P., Hildyard, John, Firczuk, Helena, Reamtong, Onrapak, Li, Ning, Kannambath, Shichina, Claydon, Amy J., Beynon, R. J. (Robert J.), Eyers, Claire E. and McCarthy, John E. G. (2011) Diauxic shift-dependent relocalization of decapping activators Dhh1 and Pat1 to polysomal complexes. Nucleic Acids Research, Vol.39 (No.17). pp. 7764-7774. doi:10.1371/journal.pone.0023630 ISSN 1362-4962.

Dsouza, Andrea, Constantinidou, Chrystala, Arvanitis, Theodoros N., Haddleton, David M., Charmet, Jérôme and Hand, Rachel A. (2022) Multifunctional composite hydrogels for bacterial capture, growth/elimination, and sensing applications. ACS Applied Materials & Interfaces, 14 (42). pp. 47323-47344. doi:10.1021/acsami.2c08582 ISSN 1944-8244.

Du Lac, Melchior, Scarpelli, Andrew H., Younger, Andrew K. D., Bates, Declan and Leonard, Joshua N. (2017) Predicting the dynamics and heterogeneity of genomic DNA content within bacterial populations across variable growth regimes. ACS Synthetic Biology, 6 (7). pp. 1131-1139. doi:10.1021/acssynbio.5b00217 ISSN 2161-5063.

Dulong, S., Huang, Qi, Innominato, P. F., Karaboue, A., Bouchahda, M., Pruvost, A., Théodoro, F., Agrofoglio, L. A., Adam, R., Finkenstädt, Bärbel and Lévi, Francis A. (2021) Circadian and chemotherapy-related changes in urinary modified nucleosides excretion in patients with metastatic colorectal cancer. Scientific Reports, 11 (1). 24015. doi:10.1038/s41598-021-03247-2 ISSN 2045-2322.

Durighello, Emie, Christie-Oleza, Joseph Alexander and Armengaud, Jean (2014) Assessing the exoproteome of marine bacteria, lesson from a RTX-Toxin abundantly secreted by Phaeobacter strain DSM 17395. PLoS One, Volume 9 (Number 2). Article number e89691. doi:10.1371/journal.pone.0089691 ISSN 1932-6203.

Durr, Julius, Reyt, Guilhem, Spaepen, Stijn, Hilton, Sally, Meehan, Cathal, Qi, Wu, Kamiya, Takehiro, Flis, Paulina, Dickinson, Hugh G., Feher, Attila, Shivshankar, Umashankar, Pavagadhi, Shruti, Swarup, Sanjay, Salter, David, Bending, G. D. and Gutierrez-Marcos, José F. (2021) A novel signaling pathway required for Arabidopsis endodermal root organization shapes the Rhizosphere microbiome. Plant and Cell Physiology, 62 (2). pp. 248-261. doi:10.1093/pcp/pcaa170 ISSN 1471-9053.

Dutta, Ritaban, Hines, Evor, Gardner, J. W. and Boilot, Pascal (2002) Bacteria classification using Cyranose 320 electronic nose. BioMedical Engineering OnLine, Vol.1 (No.4). doi:10.1186/1475-925X-1-4 ISSN 1475-925X.

D’Amore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G., Gregory, Richard, Darby, Alistair C., Shakya, Migun, Podar, Mircea, Quince, Christopher and Hall, Neil (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17 (1). doi:10.1186/s12864-015-2194-9 ISSN 1471-2164.

Eagar, Andrew C., Mushinski, Ryan, Horning, Amber L., Smemo, Kurt A., Phillips, Richard P. and Blackwood, Christopher B. (2022) Arbuscular mycorrhizal tree communities have greater soil fungal diversity and relative abundances of saprotrophs and pathogens than ectomycorrhizal tree communities. Applied and Environmental Microbiology, 88 (1). e01782. doi:10.1128/AEM.01782-21 ISSN 0099-2240.

(2013) Esperanto for histones : CENP-A, not CenH3, is the centromeric histone H3 variant. Chromosome Research, Volume 21 (Number 2). pp. 101-106. doi:10.1007/s10577-013-9347-y ISSN 0967-3849.

Ebruke, Chinelo, Roca, Anna, Egere, Uzochukwu, Darboe, Ousainou, Hill, Philip C., Greenwood, Brian (Brian A.), Wren, Brendan, Adegbola, Richard A. and Antonio, Martin (2015) Temporal changes in nasopharyngeal carriage of Streptococcus pneumoniaeserotype 1 genotypes in healthy Gambians before and after the 7-valent pneumococcal conjugate vaccine. PeerJ PrePrints, Volume 3 . Article number e903. doi:10.7717/peerj.903 ISSN 2167-9843.

Ehibhatiomhan, Austine O., Rahmanpour, Rahman, Farnaud, Sebastien, Bugg, Timothy D. H. and Mendel-Williams, Sharon (2023) Periplasmic expression of Pseudomonas fluorescens peroxidase Dyp1B and site-directed mutant Dyp1B enzymes enhances polymeric lignin degradation activity in Pseudomonas putida KT2440. Enzyme & Microbial Technology, 162 . 110147. doi:10.1016/j.enzmictec.2022.110147 ISSN 0141-0229.

Eikenes, Åsmund H., Malerød, Lene, Christensen, Anette Lie, Steen, Chloé B., Mathieu, Juliette, Nezis, Ioannis P., Liestøl, Knut, Huynh, Jean-René, Stenmark, H. and Haglund, Kaisa (2015) ALIX and ESCRT-III coordinately control cytokinetic abscission during germline stem cell division in vivo. PLoS Genetics, Volume 11 (Number 1). pp. 1-7. Article number e1004904. doi:10.1371/journal.pgen.1004904 ISSN 1553-7390.

El Ghachi, Meriem, Howe, Nicole, Huang, Chia-Ying, Olieric, Vincent, Warshamanage, Rangana, Touzé, Thierry, Weichert, Dietmar, Stansfeld, Phillip J., Wang, Meitian, Kerff, Fred and Caffrey, Martin (2018) Crystal structure of undecaprenyl-pyrophosphate phosphatase and its role in peptidoglycan biosynthesis. Nature Communications, 9 (1). 1078 . doi:10.1038/s41467-018-03477-5 ISSN 2041-1723.

Elashry, Abdelnaser, Okumoto, Sakiko, Siddique, Shahid, Koch, Wolfgang, Kreil, David and Bohlmann, Holger (2013) The AAP gene family for amino acid permeases contributes to development of the cyst nematode Heterodera schachtii in roots of Arabidopsis. Plant Physiology and Biochemistry, Volume 70 . pp. 379-386. doi:10.1016/j.plaphy.2013.05.016 ISSN 0981-9428.

Elliott, Charles M., Stinner, Björn and Venkataraman, Chandrasekhar (2012) Modelling cell motility and chemotaxis with evolving surface finite elements. Journal of The Royal Society Interface, Volume 9 (Number 76). pp. 3027-3044. doi:10.1098/rsif.2012.0276 ISSN 1742-5689.

Erdos, Zoltan, Chandler, Dave, Bass, Chris and Raymond, Ben (2021) Controlling insecticide resistant clones of the aphid, Myzus persicae, using the entomopathogenic fungus Akanthomyces muscarius : fitness cost of resistance under pathogen challenge. Pest Management Science, 77 (11). pp. 5286-5293. doi:10.1002/ps.6571 ISSN 1526-4998.

España, Mingrelia, Rasche, Frank, Kandeler, Ellen, Brune, Thomas, Rodriguez, Belkys, Bending, G. D. and Cadisch, G. (Georg) (2011) Assessing the effect of organic residue quality on active decomposing fungi in a tropical Vertisol using 15N-DNA stable isotope probing. Fungal Ecology, Vol.4 (No.1). pp. 115-119. doi:10.1016/j.funeco.2010.09.005 ISSN 1754-5048.

Eyice, Özge and Schäfer, Hendrik (2016) Culture-dependent and culture-independent methods reveal diverse methylotrophic communities in terrestrial environments. Archives of Microbiology, 198 (1). pp. 17-26. doi:10.1007/s00203-015-1160-x ISSN 0302-8933.

Eyre, David W., Didelot, Xavier, Buckley, Anthony M., Freeman, Jane, Moura, Ines B., Crook, Derrick W., Peto, Tim E.A., Walker, A. Sarah, Wilcox, Mark H. and Dingle, Kate E. (2019) Clostridium difficile trehalose metabolism variants are common and not associated with adverse patient outcomes when variably present in the same lineage. EBioMedicine, 43 . pp. 347-355. doi:10.1016/j.ebiom.2019.04.038 ISSN 2352-3964.

Fang, Yuting, Noel, Adam, Eckford, Andrew W., Yang, Nan and Guo, Jing (2021) Characterization of cooperators in Quorum sensing with 2D molecular signal analysis. IEEE Transactions on Communications, 69 (2). pp. 799-816. doi:10.1109/TCOMM.2020.3036674 ISSN 0090-6778.

Farrant, Gregory K., Doré, Hugo, Cornejo-Castillo, Francisco M., Partensky, Frédéric, Ratin, Morgane, Ostrowski, Martin, Pitt, Frances D., Wincker, Patrick, Scanlan, David J. , Iudicone, Daniele, Acinas, Silvia G. and Garczarek, Laurence (2016) Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 113 (24). E3365-E3374. doi:10.1073/pnas.1524865113 ISSN 0027-8424.

Farrell, Frederick, Gralka, Matti, Hallatschek, Oskar and Waclaw, Bartlomiej (2017) Mechanical interactions in bacterial colonies and the surfing probability of beneficial mutations. Journal of the Royal Society, Interface, 14 (131). 20170073. doi:10.1098/rsif.2017.0073 ISSN 1742-5662.

Fayter, Alice E. R., Hasan, Muhammad, Congdon, Thomas R., Kontopoulou, Ioanna and Gibson, Matthew I. (2020) Ice recrystallisation inhibiting polymers prevent irreversible protein aggregation during solvent-free cryopreservation as additives and as covalent polymer-protein conjugates. European Polymer Journal, 140 . 110036. doi:10.1016/j.eurpolymj.2020.110036 ISSN 0014-3057.

Fenn, Jonathan S., Nepravishta, Ridvan, Guy, Collette S., Harrison, James, Angulo, Jesus, Cameron, Alexander and Fullam, Elizabeth (2019) Structural basis of glycerophosphodiester recognition by the mycobacterium tuberculosis substrate-binding protein UgpB. ACS Chemical Biology, 14 (9). pp. 1879-1887. doi:10.1021/acschembio.9b00204 ISSN 1554-8929.

Firczuk, Helena, Teahan, James, Mendes, Pedro and McCarthy, John E. G. (2020) Multi-site rate control analysis identifies ribosomal scanning as the sole high-capacity/low-flux-control step in mRNA translation. FEBS Journal, 287 (5). pp. 925-940. doi:10.1111/febs.15059 ISSN 1742-4658.

Fountain-Jones, Nicholas M., Kraberger, Simona, Gagne, Roderick B., Gilbertson, Marie L. J., Trumbo, Daryl R., Charleston, Michael, Salerno, Patricia E., Chris Funk, W., Crooks, Kevin, Logan, Kenneth, Alldredge, Mathew, Dellicour, Simon, Baele, Guy, Didelot, Xavier, VandeWoude, Sue, Carver, Scott and Craft, Meggan E. (2022) Hunting alters viral transmission and evolution in a large carnivore. Nature Ecology & Evolution . pp. 174-182. doi:10.1038/s41559-021-01635-5 ISSN 2397-334X.

Frankel, Gad, Shaw, Robert K., Pink, David, Berger, Cedric N. and Hand, Paul (2009) Fresh produce as a potential vector for bacterial human pathogens. Microbial Biotechnology, Vol.2 (No.6). pp. 595-597. doi:10.1111/j.1751-7915.2009.00137.x ISSN 1751-7907.

Fraser, Hannah, Gallacher, Daniel C., Achana, Felix A., Court, Rachel A., Taylor-Phillips, Sian, Nduka, Chidozie U., Stinton, Chris, Willans, Rebecca, Gill, Paramjit and Mistry, Hema (2020) Rapid antigen detection and molecular tests for group A streptococcal infections for acute sore throat : systematic reviews and economic evaluation. Health Technology Assessment, 24 (31). pp. 1-232. doi:10.3310/hta24310 ISSN 1366-5278.

Freeman, Zoë N., Dorus, Steve and Waterfield, Nicholas R. (2013) The KdpD/KdpE two-component system : integrating K+ homeostasis and virulence. PLoS Pathogens, Volume 9 (Number 3). Article number e1003201. doi:10.1371/journal.ppat.1003201 ISSN 1553-7374.

(2020) A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics. Microbial Genomics, 6 (8). doi:10.1099/mgen.0.000410 ISSN 2057-5858.

Fullam, Elizabeth, Pojer, Florence, Bergfors, Terese, Jones, T. Alwyn and Cole, Stewart T. (2012) Structure and function of the transketolase from Mycobacterium tuberculosis and comparison with the human enzyme. Open Biology, Volume 2 (110026). Article number 110026. doi:10.1098/rsob.110026 ISSN 2046-2441.

Fullam, Elizabeth, Prokes, Ivan, Fütterer, Klaus and Besra, Gurdyal S. (2016) Structural and functional analysis of the solute-binding protein UspC from Mycobacterium tuberculosis that is specific for amino sugars. Open Biology (6). doi:10.1098/rsob.160105 ISSN 2046-2441.

Furner-Pardoe, Jessica, Anonye, Blessing O., Cain, Ricky, Moat, John, Ortori, Catherine A., Lee, Christina, Barrett, David A., Corre, Christophe and Harrison, Freya (2020) Anti-biofilm efficacy of a medieval treatment for bacterial infection requires the combination of multiple ingredients. Scientific Reports, 10 (1). 12687. doi:10.1038/s41598-020-69273-8 ISSN 2045-2322.

Furze, Christopher M., Delso, Ignacio, Casal, Enriqueta, Guy, Collette S., Seddon, Chloe, Brown, Chelsea M., Parker, Hadyn L., Radhakrishnan, Anjana, Pacheco-Gomez, Raul, Stansfeld, Phillip J., Angulo, Jesus, Cameron, Alexander D. and Fullam, Elizabeth (2021) Structural basis of trehalose recognition by the mycobacterial LpqY-SugABC transporter. Journal of Biological Chemistry, 296 . 100307. doi:10.1016/j.jbc.2021.100307 ISSN 0021-9258.

Galley, Nicola F., O'Reilly, Amy M. and Roper, David I. (2014) Prospects for novel inhibitors of peptidoglycan transglycosylase. Bioorganic Chemistry, Volume 55 (Number 100). pp. 16-26. doi:10.1016/j.bioorg.2014.05.007 ISSN 0045-2068.

Garcia De Gonzalo, C. V., Denham, Emma, Mars, Ruben A. T., Stülke, J., Donk, W. A. van der and Dijl, Jan Maarten van (2015) The phosphoenolpyruvate : sugar phosphotransferase system is involved in sensitivity to the glucosylated bacteriocin sublancin. Antimicrobial agents and chemotherapy, 59 (11). pp. 6844-6854. doi:10.1128/AAC.01519-15 ISSN 0066-4804.

(2021) Cyanorak v2.1 : a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes. Nucleic Acids Research, 49 (D1). D667-D676. doi:10.1093/nar/gkaa958 ISSN 1362-4962.

García-Rodríguez, Luis J., De Piccoli, Giacomo, Marchesi, Vanessa, Jones, Richard C., Edmondson, Ricky D. and Labib, Karim (2015) A conserved Polϵ binding module in Ctf18-RFC is required for S-phase checkpoint activation downstream of Mec1. Nucleic Acids Research, 43 (18). pp. 8830-8838. doi:10.1093/nar/gkv799 ISSN 0305-1048.

Gaze, William H., O'Neill, Colette, Wellington, E. M. H. and Hawkey, P. M. (2008) Antibiotic resistance in the environment, with particular reference to MRSA. Advances in Applied Microbiology, Vol.63 . pp. 249-280. doi:10.1016/S0065-2164(07)00007-X ISSN 0065-2164.

Ghebrehewet, Sam, Shepherd, Wendi, Panford-Quainoo, Edwin, Shantikumar, Saran, Decraene, Valerie, Rajendran, Rajesh, Kaushal, Menaal, Akuffo, Afua, Ayerh, Dinah and Amofah, George (2020) Implementation of a delayed prescribing model to reduce antibiotic prescribing for suspected upper respiratory tract infections in a hospital outpatient department, Ghana. Antibiotics, 9 (11). 773. doi:10.3390/antibiotics9110773 ISSN 2079-6382.

Giacomucci, Sean, Alvarez, Laura, Rodrigues, Christopher D. A., Cava, Felipe and Paradis-Bleau, Catherine (2022) Hydroxyl radical overproduction in the envelope : an achilles' heel in peptidoglycan synthesis. Microbiology Spectrum, 10 (1). e0120321. doi:10.1128/spectrum.01203-21 ISSN 2165-0497.

(2014) Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors. Molecular Cell, Volume 53 (Number 3). pp. 369-379. doi:10.1016/j.molcel.2013.12.020 ISSN 1097-2765.

Gilbert, Rosalind A., Townsend, Eleanor M., Crew, Kathleen S., Hitch, Thomas C. A., Friedersdorff, Jessica C. A., Creevey, Christopher J., Pope, Phillip B., Ouwerkerk, Diane and Jameson, Eleanor (2020) Rumen virus populations : technological advances enhancing current understanding. Frontiers in Microbiology, 11 . 451. doi:10.3389/fmicb.2020.00450 ISSN 1664-302X.

Girija, Umakhanth Venkatraman, Furze, Christopher M., Gingras, Alexandre R., Yoshizaki, Takayuki, Ohtani, Katsuki, Marshall, Jamie E., Wallis, A. Katrine, Schwaeble, Wilhelm J., El-Mezgueldi, Mohammed, Mitchell, Daniel A., Moody, Peter C. E., Wakamiya, Nobutaka and Wallis, Russell (2015) Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome. BMC biology, 13 (1). pp. 1-13. 27. doi:10.1186/s12915-015-0136-2 ISSN 1741-7007.

Gleeson, Deirdre B., Martin, Belinda C., Lardner, Tim, Ball, Andrew S., Grice, Kliti, Holman, Alex I., Trolove, Alastair, Manix, Megan, Tibbett, Mark, Bending, G. D., Hilton, Sally and Ryan, Megan H. (2021) Natural attenuation of legacy hydrocarbon spills in pristine soils is feasible despite difficult environmental conditions in the monsoon tropics. Science of The Total Environment, 799 . 149335. doi:10.1016/j.scitotenv.2021.149335 ISSN 0048-9697.

Goffe, Louis, Antonopoulou, Vivi, Meyer, Carly, Graham , Fiona, Tang, Mei Yee, Lecouturier, Jan, Grimani, Aikaterini, Bambra, Clare, Kellen, Michael and Sniehotta , Falko (2022) Factors associated with vaccine intention in adults living in England who either did not want or had not yet decided to be vaccinated against COVID-19. Human Vaccines & Immunotherapeutics, 17 (12). 5242-5254 . doi:10.1080/21645515.2021.2002084 ISSN 2164-5515.

Gog, Julia R., Hill, Edward M., Danon, Leon and Thompson, Robin N. (2021) Vaccine escape in a heterogeneous population : insights for SARS-CoV-2 from a simple model. Royal Society Open Science, 8 (7). 210530. doi:10.1098/rsos.210530 ISSN 2054-5703.

Gog, Julia R., Pellis, Lorenzo, Wood, James L. N., McLean, Angela R., Arinaminpathy, Nimalan and Lloyd-Smith, James O. (2015) Seven challenges in modelling pathogen dynamics within-host and across scales. Epidemics, Volume 10 . pp. 45-48. doi:10.1016/j.epidem.2014.09.009 ISSN 1755-4365.

Gorsich, Erin E., Beechler, Brianna R., van Bodegom, Peter M., Govender, Danny, Guarido, Milehna, Venter, Marietjie and Schrama, Maarten (2019) A comparative assessment of adult mosquito trapping methods to estimate spatial patterns of abundance and community composition in southern Africa. Parasites & Vectors, 12 . 462 . doi:10.1186/s13071-019-3733-z ISSN 1756-3305.

(2014) Crossing the interspecies barrier : opening the door to zoonotic pathogens. PLoS Pathogens, Volume 10 (Number 6). Article number e1004129. doi:10.1371/journal.ppat.1004129 ISSN 1553-7374.

Grafke, Tobias, Cates, Michael E. and Vanden-Eijnden, Eric (2017) Spatiotemporal self-organization of fluctuating bacterial colonies. Physical Review Letters, 119 (18). 188003 . doi:10.1103/PhysRevLett.119.188003 ISSN 0031-9007.

Graham, Neil S., Broadley, Martin R., Hammond, John P., White, Philip J. and May, Sean T. (2007) Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection. BMC Genomics, Vol.8 (No.344). doi:10.1186/1471-2164-8-344 ISSN 1471-2164.

Granato, Elisa T., Harrison, Freya, Kümmerli, Rolf and Ross-Gillespie, Adin (2016) Do bacterial “virulence factors” always increase virulence? A meta-analysis of pyoverdine production in pseudomonas aeruginosa as a test case. Frontiers in Microbiology, 7 . doi:10.3389/fmicb.2016.01952 ISSN 1664-302X.

Greene, Nicholas P., Kaplan, Elise, Crow, Allister and Koronakis, Vassilis (2018) Antibiotic resistance mediated by the MacB ABC transporter family : a structural and functional perspective. Frontiers in Microbiology, 9 . 950. doi:10.3389/fmicb.2018.00950 ISSN 1664-302X.

Gregor, Ivan, Dröge, Johannes, Schirmer, Melanie, Quince, Christopher and McHardy, Alice C. (2016) PhyloPythiaS+ : a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes. PeerJ, 4 . e1603. doi:10.7717/peerj.1603 ISSN 2167-8359.

Grigonyte, Aurelija, Harrison, Christian, Macdonald, Paul R., Montero-Blay, Ariadna, Tridgett, Matthew, Duncan, John, Sagona, Antonia P., Constantinidou, Chrystala, Jaramillo, Alfonso and Millard, Andrew D. (2020) Comparison of CRISPR and marker-based methods for the engineering of Phage T7. Viruses, 12 (2). e193. doi:10.3390/v12020193 ISSN 1999-4915.

Grob, Carolina, Jardillier, Ludwig, Hartmann, Manuela, Ostrowski, Martin, Zubkov, Mikhail V. and Scanlan, David J. (2015) Cell-specific CO2 fixation rates of two distinct groups of plastidic protists in the Atlantic Ocean remain unchanged after nutrient addition. Environmental Microbiology Reports, Volume 7 (Number 2). pp. 211-218. doi:10.1111/1758-2229.12228 ISSN 1758-2229.

Grob, Carolina, Taubert, Martin, Howat, Alexandra M., Burns, Oliver J., Dixon, Joanna L., Richnow, Hans H., Jehmlich, Nico, von Bergen, Martin, Chen, Yin and Murrell, J. C. (J. Colin) (2015) Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph. Environmental Microbiology, 17 (10). pp. 4007-4018. doi:10.1111/1462-2920.12935 ISSN 1462-2912.

Grobas, Iago, Asally, Munehiro and Polin, Marco (2022) The dynamics of single-to-multi layer transition in bacterial swarms. Frontiers in Soft Matter, 2 . 936779. doi:10.3389/frsfm.2022.936779 ISSN 2813-0499.

Grobas, Iago, Bazzoli, Dario G. and Asally, Munehiro (2020) Biofilm and swarming emergent behaviours controlled through the aid of biophysical understanding and tools. Biochemical Society Transactions, 48 (6). pp. 2903-2913. doi:10.1042/BST20200972 ISSN 0300-5127.

Grobas, Iago, Polin, Marco and Asally, Munehiro (2021) Swarming bacteria undergo localized dynamic phase transition to form stress-induced biofilms. eLife, 10 . e62632. doi:10.7554/eLife.62632 ISSN 2050-084X.

Grosskinsky, Stefan, Marahrens, Daniel and Stevens, Angela (2017) A hydrodynamic limit for chemotaxis in a given heterogeneous environment. Vietnam Journal of Mathematics, 45 (1-2). pp. 127-152. doi:10.1007/s10013-016-0209-8 ISSN 2305-221X.

Großkopf, Tobias, Consuegra, Jessika, Gaffé, Joël, Willison, John C., Lenski, Richard E., Soyer, Orkun S. and Schneider, Dominique (2016) Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment. BMC Evolutionary Biology, 16 (1). doi:10.1186/s12862-016-0733-x ISSN 1471-2148.

Großkopf, Tobias and Soyer, Orkun S. (2016) Microbial diversity arising from thermodynamic constraints. The ISME Journal, 10 . pp. 2725-2733. doi:10.1038/ismej.2016.49 ISSN 1751-7362.

Großkopf, Tobias and Soyer, Orkun S. (2014) Synthetic microbial communities. Current Opinion in Microbiology, Volume 18 . pp. 72-77. doi:10.1016/j.mib.2014.02.002 ISSN 1369-5274.

Großkopf, Tobias, Zenobi, Simone, Alston, Mark, Folkes, Leighton, Swarbreck, David and Soyer, Orkun S. (2016) A stable genetic polymorphism underpinning microbial syntrophy. The ISME Journal, 10 . pp. 2844-2853. doi:10.1038/ismej.2016.80 ISSN 1751-7362.

Grébert, Théophile, Doré, Hugo, Partensky, Frédéric, Farrant, Gregory K., Boss, Emmanuel S., Picheral, Marc, Guidi, Lionel, Pesant, Stéphane, Scanlan, David J. , Wincker, Patrick, Acinas, Silvia G., Kehoe, David M. and Garczarek, Laurence (2018) Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 115 (9). E2010-E2019. 201717069. doi:10.1073/pnas.1717069115 ISSN 0027-8424.

Gu, Yinghong, Li, Huanyu, Dong, Haohao, Zeng, Yi, Zhang, Zhengyu, Paterson, Neil G., Stansfeld, Phillip J., Wang, Zhongshan, Zhang, Yizheng, Wang, Wenjian and Dong, Changjiang (2016) Structural basis of outer membrane protein insertion by the BAM complex. Nature, 531 (7592). pp. 64-69. doi:10.1038/nature17199 ISSN 0028-0836.

Guarido, M. M., Riddin, M. A., Johnson, T., Braack, L. E. O., Schrama, M., Gorsich, Erin E., Brooke, B. D., Almeida, A. P. G. and Venter, Marietjie (2021) Aedes species (Diptera: Culicidae) ecological and host feeding patterns in the north-eastern parts of South Africa, 2014–2018. Parasites & Vectors, 14 (1). 339. doi:10.1186/s13071-021-04845-9 ISSN 1756-3305.

Guarido, Milehna Mara, Motlou, Thopisang, Riddin, Megan A., MacIntyre, Caitlin, Manyana, Sontaga Cris, Johnson, Todd, Schrama, Maarten, Gorsich, Erin E., Brooke, Basil D., Almeida, A. Paulo G. and Venter, Marietjie (2021) Potential mosquito vectors for Shuni virus, South Africa, 2014–2018. Emerging Infectious Diseases , 27 (12). pp. 3142-3146. doi:10.3201/eid2712.203426 ISSN 1080-6059.

Guetzoyan, Lucie J., Spooner, Robert A. , Lord, Mike, Roberts, L. M. (Lynne M.) and Clarkson, Guy J. (2010) Simple oxidation of pyrimidinylhydrazones to triazolopyrimidines and their inhibition of Shiga toxin trafficking. European Journal of Medicinal Chemistry, Vol.45 (No.1). pp. 275-283. doi:10.1016/j.ejmech.2009.10.007 ISSN 0223-5234.

Guillonneau, Richard, Murphy, Andrew, Teng, Zhao-Jie, Wang, Peng , Zhang, Yu-Zhong, Scanlan, David J. and Chen, Yin (2022) Trade-offs of lipid remodelling in a marine predator-prey interaction in response to phosphorus limitation. Proceedings of the National Academy of Sciences of the United States of America, 119 (36). e2203057119. doi:10.1073/pnas.2203057119 ISSN 0027-8424.

Gull, Sadaf and Minhas, Fayyaz ul Amir Afsar (2022) AMP0 : species-specific prediction of anti-microbial peptides using zero and few shot learning. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 19 (1). pp. 275-283. doi:10.1109/TCBB.2020.2999399 ISSN 1545-5963.

Gull, Sadaf, Shamim, Nauman and Minhas, Fayyaz ul Amir Afsar (2019) AMAP : Hierarchical multi-label prediction of biologically active and antimicrobial peptides. Computers in Biology and Medicine, 107 . pp. 172-181. doi:10.1016/j.compbiomed.2019.02.018 ISSN 0010-4825.

Gutierrez-Caballero, Cristina, Burgess, Selena G., Bayliss, Richard and Royle, Stephen J. (2015) TACC3-ch-TOG track the growing tips of microtubules independently of clathrin and Aurora-A phosphorylation. Biology Open, 4 . pp. 170-179. doi:10.1242/bio.201410843 ISSN 2046-6390.

Guy, Collette S., Gibson, Matthew I. and Fullam, Elizabeth (2019) Targeting extracellular glycans : tuning multimeric boronic acids for pathogen-selective killing of Mycobacterium tuberculosis. Chemical Science, 10 (23). 5935-5942 . doi:10.1039/C9SC00415G ISSN 2041-6520.

Guy, Collette S., Murray, Kathryn, Gibson, Matthew I. and Fullam, Elizabeth (2019) Dimeric benzoboroxoles for targeted activity against Mycobacterium tuberculosis. Organic & Biomolecular Chemistry, 17 (43). pp. 9524-9528. doi:10.1039/C9OB02222H ISSN 1477-0520.

Guy, Collette S., Tomás, Ruben M. F., Tang, Qiao, Gibson, Matthew I. and Fullam, Elizabeth (2022) Imaging of antitubercular dimeric boronic acids at the mycobacterial cell surface by click-probe capture. Chemical Communications, 58 (67). pp. 9361-9364. doi:10.1039/D2CC02407A ISSN 1359-7345.

Gyoergy, Attila, Roblek, Marko, Ratheesh, Aparna, Valoskova, Katarina, Belyaeva, Vera, Wachner, Stephanie, Matsubayashi, Yutaka, Sánchez-Sánchez, Besaiz J., Stramer, Brian and Siekhaus, Daria E. (2018) Tools allowing independent visualization and genetic manipulation of Drosophila melanogaster macrophages and surrounding tissues. G3: Genes, Genomes, Genetics, 8 (3). g3.300452.2017. doi:10.1534/g3.117.300452 ISSN 2160-1836.

Gómez-Pereira, Paola R., Hartmann, Manuela, Grob, Carolina, Tarran, Glen A., Martin, Adrian P., Fuchs, Bernhard M., Scanlan, David J. and Zubkov, Mikhail V. (2013) Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre. The ISME Journal, Vol.7 (No.3). pp. 603-614. doi:10.1038/ismej.2012.126 ISSN 1751-7362.

Gómez-Álvarez, Helena, Iturbe, Pablo, Rivero-Buceta, Virginia, Mines, Paul, Bugg, Tim, Nogales, Juan and Díaz, Eduardo (2022) Bioconversion of lignin-derived aromatics into the building block pyridine 2,4-dicarboxylic acid by engineering recombinant Pseudomonas putida strains. Bioresource Technology, 346 . 126638. doi:10.1016/j.biortech.2021.126638 ISSN 0960-8524.

Hackenberg, Dieter, Asare-Bediako, Elvis, Baker, Adam R., Walley, Peter Glen, Jenner, Carol E., Greer, Shannon, Bramham, Lawrence, Batley, Jacqueline, Edwards, David, Delourme, Regine, Barker, Guy C., Teakle, Graham R. and Walsh, John A. (2020) Identification and QTL mapping of resistance to Turnip yellows virus (TuYV) in oilseed rape, Brassica napus. Theoretical and Applied Genetics, 133 (2). pp. 383-393. doi:10.1007/s00122-019-03469-z ISSN 0040-5752.

Hadlington, Jane L., Santoro, Aniello, Nuttall, James, Denecke, J. (Jurgen), Ma, Julian K.-C., Vitale, A. (Alessandro) and Frigerio, Lorenzo (2003) The c-terminal extension of a hybrid immunoglobulin A/G heavy chain is responsible for its Golgi-mediated sorting to the vacuole. Molecular Biology of the Cell, Vol.14 (No.6). pp. 2592-2602. doi:10.1091/mbc.E02-11-0771 ISSN 1059-1524.

(2018) Antibiotics and activity spaces: protocol of an exploratory study of behaviour, marginalisation and knowledge diffusion. BMJ Global Health, 3 . e000621. doi:10.1136/bmjgh-2017-000621 ISSN 2059-7908.

Haenssgen, Marco Johannes, Xayavong, Thipphaphone, Charoenboon, Nutcha, Warapikuptanun, Penporn and Khine Zaw, Yuzana (2018) The consequences of AMR education and awareness raising : outputs, outcomes, and behavioural impacts of an antibiotic-related educational activity in Lao PDR. Antibiotics, 7 (4). 95. doi:10.3390/antibiotics7040095 ISSN 2079-6382.

Haering, Christian H., Farcas, Ana-Maria, Arumugam, Prakash, Metson, Jean and Nasmyth, Kim (2008) The cohesin ring concatenates sister DNA molecules. Nature, Vol.454 . pp. 297-301. doi:10.1038/nature07098 ISSN 0028-0836.

Haidari, G., Cope, A., Miller, A., Venables, S., Yan, C., Ridgers, H., Reijonen, K., Hannaman, D., Spentzou, A., Hayes, P., Bouliotis, Georgios, Vogt, A., Joseph, S., Combadiere, B., McCormack, S. and Shattock, R. J. (2017) Combined skin and muscle vaccination differentially impact the quality of effector T cell functions : the CUTHIVAC-001 randomized trial. Scientific Reports, 7 (1). 13011. doi:10.1038/s41598-017-13331-1 ISSN 2045-2322.

Halachev, Mihail R., Chan, Jacqueline, Constantinidou, Chrystala, Cumley, Nicola, Bradley, Craig, Smith-Banks, Matthew, Oppenheim, Beryl and Pallen, Mark J. (2014) Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumannii in Birmingham, England. Genome Medicine, Volume 6 (Number 11). pp. 1-13. Article number 70. doi:10.1186/s13073-014-0070-x ISSN 1756-994X.

Halachev, Mihail R., Loman, Nicholas J. and Pallen, Mark J. (2011) Calculating orthologs in bacteria and archaea : a divide and conquer approach. PLoS One, Volume 6 (Number 12). Article number e28388. doi:10.1371/journal.pone.0028388 ISSN 1932-6203.

Hall, Sharon A., Allen, Rebecca L., Baumber, Rachel E., Baxter, Laura, Fisher, Kate, Bittner-Eddy , Peter D., Rose, Laura E., Holub, E. B. and Beynon, Jim (2009) Maintenance of genetic variation in plants and pathogens involves complex networks of gene-for-gene interactions. Molecular Plant Pathology, Vol.10 (No.4). pp. 449-457. doi:10.1111/j.1364-3703.2009.00544.x ISSN 1464-6722.

Hammond, J., Adams, I., Fowkes, A., McGreig, S., Botermans, M., van Oorspronk, J., Westenberg, M., Verbeek, M., Dullemans, A., Stijger, C., Blouin, A., Massart, S., de Jonghe, K., Heyneman, M., Walsh, John A. and Fox, A. (2021) Sequence analysis of 43-year old samples of Plantago lanceolata show that Plantain virus X is synonymous with Actinidia virus X and is widely distributed. Plant Pathology, 70 (2). pp. 249-258. doi:10.1111/ppa.13310 ISSN 0032-0862.

Hammond, John P., Broadley, Martin R., Craigon, David J., Higgins, Janet, Emmerson, Zoe F., Townsend, Henrik J., White, Philip J. and May, Sean T. (2005) Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species. Plant Methods, Vol.1 (No.10). doi:10.1186/1746-4811-1-10 ISSN 1746-4811.

Hancock, Penelope A. and Godfray, H. Charles J. (2012) Modelling the spread of Wolbachia in spatially heterogeneous environments. Journal of The Royal Society Interface, Vol.9 (No.76). pp. 3045-3054. doi:10.1098/rsif.2012.0253 ISSN 1742-5689.

Hardy, K. (Katherine), Price, Charlotte L, Szczepura, Ala, Gossain, Savita, Davies, Ruth, Stallard, Nigel, Shabir, Sahida, McMurray, Claire, Bradbury, Andrew and Hawkey, P. M. (Peter M.) (2009) Reduction in the rate of methicillin-resistant Staphylococcus aureus acquisition in surgical wards by rapid screening for colonization : a prospective, cross-over study. Clinical Microbiology and Infection, Vol.16 (No.4). pp. 333-339. doi:10.1111/j.1469-0691.2009.02899.x ISSN 1198-743X.

Hargreaves, Katherine R., Otieno, James R., Thanki, Anisha, Blades, Matthew J., Millard, Andrew D., Browne, Hilary P., Lawley, Trevor D. and Clokie, Martha R. J. (2015) As clear as mud? Determining the diversity and prevalence of prophages in the draft genomes of estuarine isolates of Clostridium difficile. Genome Biology and Evolution, Volume 7 (Number 7). pp. 1842-1855. doi:10.1093/gbe/evv094 ISSN 1759-6653.

Harrington, Niamh, Littler, Jenny and Harrison, Freya (2022) Transcriptome analysis of Pseudomonas aeruginosa biofilm infection in an ex vivo pig model of the cystic fibrosis lung. Applied and Environmental Microbiology, 88 (3). e01789-21. doi:10.1128/AEM.01789-21 ISSN 0099-2240.

Harrington, Niamh, Sweeney, Esther and Harrison, Freya (2020) Building a better biofilm - formation of in vivo-like biofilm structures by Pseudomonas aeruginosa in a porcine model of cystic fibrosis lung infection. Biofilm, 2 . 100024. doi:10.1016/j.bioflm.2020.100024 ISSN 2590-2075.

Harrison, Andrew B., Binder, Hans, Buhot, Arnaud , Burden, Conrad John, Carlon, Enrico, Gibas, Cynthia, Gamble, Lara J., Halperin, Avraham, Hooyberghs, Jef, Kreil, David, Levicky, Rastislav, Noble, Peter A., Ott, Albrecht, Pettitt, B. Montgomery, Tautz, Diethard and Pozhitkov, Alexander E. (2013) Physico-chemical foundations underpinning microarray and next-generation sequencing experiments. Nucleic Acids Research, Volume 41 (Number 5). pp. 2779-2796. doi:10.1093/nar/gks1358 ISSN 0305-1048.

Harrison, Freya and Buckling, Angus (2011) Wider access to genotypic space facilitates loss of cooperation in a bacterial mutator. PLoS One, 6 (2). e17254. doi:10.1371/journal.pone.0017254 ISSN 1932-6203.

Harrison, Freya and Diggle, Stephen P. (2016) An ex vivo lung model to study bronchioles infected with Pseudomonas aeruginosa biofilms. Microbiology, 162 . pp. 1755-1760. doi:10.1099/mic.0.000352 ISSN 1350-0872.

Harrison, Freya, McNally, Alan, da Silva, Ana C., Heeb, Stephan and Diggle, Stephen P. (2017) Optimised chronic infection models demonstrate that siderophore ‘cheating’ in Pseudomonas aeruginosa is context specific. The ISME Journal, 11 . pp. 2492-2509. doi:10.1038/ismej.2017.103 ISSN 1751-7362.

Harrison, Freya, Muruli, Aneesha, Higgins, Steven and Diggle, Stephen P. (2014) Development of an ex vivo porcine lung model for studying growth, virulence, and signaling of pseudomonas aeruginosa. Infection and Immunity, 82 (8). pp. 3312-3323. doi:10.1128/IAI.01554-14 ISSN 0019-9567.

Hartlieb, Matthias, Williams, E. G., Kuroki, Agnès, Perrier, Sébastien and Locock, K. E. (2017) Antimicrobial polymers : mimicking amino acid functionality, sequence control and three-dimensional structure of host-defense peptides. Current Medicinal Chemistry, 24 (19). pp. 2115-2140. doi:10.2174/0929867324666170116122322 ISSN 0929-8673.

Hartmann, Manuela, Grob, Carolina, Tarran, Glen A., Martin, Adrian P., Burkill, Peter H., Scanlan, David J. and Zubkov, Mikhail V. (2012) Mixotrophic basis of Atlantic oligotrophic ecosystems. Proceedings of the National Academy of Sciences, Volume 109 (Number 15). pp. 5756-5760. doi:10.1073/pnas.1118179109 ISSN 0027-8424.

Hasan, Muhammad, Fayter, Alice E. R. and Gibson, Matthew I. (2018) Ice recrystallization inhibiting polymers enable glycerol-free cryopreservation of microorganisms. Biomacromolecules, 19 (8). pp. 3371-3376. doi:10.1021/acs.biomac.8b00660 ISSN 1525-7797.

Hassan, Marwa, Harrington, Niamh, Sweeney, Esther and Harrison, Freya (2020) Predicting antibiotic-associated virulence of pseudomonas aeruginosa using an ex vivo lung biofilm model. Frontiers in Microbiology, 11 . 568510. doi:10.3389/fmicb.2020.568510 ISSN 1664-302X.

Hatton, Caitlin, Brotherton, Deborah H., Spencer, Mahalah and Cameron, Alexander D. (2022) Structure of cytosine transport protein CodB provides insight into nucleobase‐cation symporter 1 mechanism. The EMBO Journal, 41 (16). e110527. doi:10.15252/embj.2021110527 ISSN 0261-4189.

Heal, Jack W., Wells, Stephen A., Blindauer, Claudia A., Freedman, R. B. and Römer, Rudolf A. (2015) Characterization of folding cores in the cyclophilin A-cyclosporin A complex. Biophysical Journal, Volume 108 (Number 7). pp. 1739-1746. doi:10.1016/j.bpj.2015.02.017 ISSN 0006-3495.

Heather, Zoe, Holden, Matthew T. G., Steward, Karen F., Parkhill, Julian, Song, Lijiang, Challis, Gregory L., Robinson, C. (Carl), Davis-Poynter, Nicholas and Waller, Andrew S. (2008) A novel streptococcal integrative conjugative element involved in iron acquisition. Molecular Microbiology, Volume 70 (Number 5). pp. 1274-1292. doi:10.1111/j.1365-2958.2008.06481.x ISSN 0950-382X.

Heidecker, Bettina, Dagan, Noa, Balicer, Ran, Eriksson, Urs, Rosano, Giuseppe, Coats, Andrew, Tschöpe, Carsten, Kelle, Sebastian, Poland, Gregory A., Frustaci, Andrea, Klingel, Karin, Martin, Pilar, Hare, Joshua M., Cooper, Leslie T., Pantazis, Antonis, Imazio, Massimo, Prasad, Sanjay and Lüscher, Thomas F. (2022) Myocarditis following COVID ‐19 vaccine : incidence, presentation, diagnosis, pathophysiology, therapy, and outcomes put into perspective. A clinical consensus document supported by the Heart Failure Association of the European Society of Cardiology (ESC) and the ESC Working Group on Myocardial and Pericardial Diseases. European Journal of Heart Failure, 24 (11). pp. 2000-2018. doi:10.1002/ejhf.2669 ISSN 1388-9842.

Helliwell, Katherine Emma, Lawrence, Andrew David, Holzer, Andre, Kudahl, Johan, Sasso, Severin, Kräutler, Bernhard , Scanlan, David J. , Warren , Martin James and Smith, Alison Gail (2016) Cyanobacteria and eukaryotic algae use different chemical variants of vitamin B12. Current Biology, 26 (8). pp. 999-1008. doi:10.1016/j.cub.2016.02.041 ISSN 0960-9822.

Hellyer, Thomas P., Anderson, Niall H., Parker, Jennie, Dark, Paul, Van Den Broeck, Tina, Singh, Suveer, McMullan, Ronan, Agus, Ashley M., Emerson, Lydia M., Blackwood, Bronagh, Gossain, Savita, Walsh, Tim S., Perkins, Gavin D., Conway Morris, Andrew, McAuley, Daniel F. and Simpson, A. John (2016) Effectiveness of biomarker-based exclusion of ventilator-acquired pneumonia to reduce antibiotic use (VAPrapid-2) : study protocol for a randomised controlled trial. Trials, 17 (1). doi:10.1186/s13063-016-1442-x ISSN 1745-6215.

Hellyer, Thomas P., Anderson, Niall H., Parker, Jennie, Dark, Paul, Van Den Broeck, Tina, Singh, Suveer, McMullan, Ronan, Agus, Ashley M., Emerson, Lydia M., Blackwood, Bronagh, Gossain, Savita, Walsh, Tim S., Perkins, Gavin D., Morris, Andrew Conway, McAuley, Daniel F. and Simpson, A. John (2016) Erratum to : ‘Effectiveness of biomarker-based exclusion of ventilator-acquired pneumonia to reduce antibiotic use (VAPrapid-2) : study protocol for a randomised controlled trial’. Trials, 17 (1). doi:10.1186/s13063-016-1594-8 ISSN 1745-6215.

Hemsley, Claudia M., Luo, Jamie X., Andreae, Clio A., Butler, Clive S., Soyer, Orkun S. and Titball, Richard W. (2014) Bacterial drug tolerance under clinical conditions is governed by anaerobic adaptation but not anaerobic respiration. Antimicrobial Agents and Chemotherapy, Volume 58 (Number 10). pp. 5775-5783. doi:10.1128/AAC.02793-14 ISSN 0066-4804.

Heneghan, Mary N., Porta, Claudine, Zhang, Cunjin, Burton, Kerry S., Challen, Michael P., Bailey, Andy M. and Foster, Gary D. (2009) Characterization of serine proteinase expression in agaricus bisporus and coprinopsis cinerea by using green fluorescent protein and the A. bisporus SPR1 Promoter. Applied and Environmental Microbiology, Vol.75 (No.3). pp. 792-801. doi:10.1128/AEM.01897-08 ISSN 0099-2240.

Hennart, Melanie, Panunzi, Leonardo G., Rodrigues, Carla, Gaday, Quentin, Baines, Sarah L., Barros-Pinkelnig, Marina, Carmi-Leroy, Annick, Dazas, Melody, Wehenkel, Anne Marie, Didelot, Xavier, Toubiana, Julie, Badell, Edgar and Brisse, Sylvain (2020) Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Medicine, 12 (1). 107. doi:10.1186/s13073-020-00805-7 ISSN 1756-994X.

Herdman, M., von Kügelgen, A., Kureisaite-Ciziene, D., Duman, R., El Omari, K., Garman, E. F., Kjaer, A., Kolokouris, D., Löwe, J., Wagner, A., Stansfeld, Phillip J. and Bharat, T. (2022) High-resolution mapping of metal ions reveals principles of surface layer assembly in Caulobacter crescentus cells. Structure, 30 (2). pp. 215-228. doi:10.1016/j.str.2021.10.012 ISSN 0969-2126.

Hill, Steven M. (Mark), Neve, Richard M., Bayani, Nora, Kuo, Wen-Lin, Ziyad, Safiyyah, Spellman, Paul T., Gray, Joe W. and Mukherjee, Sach (2012) Integrating biological knowledge into variable selection : an empirical Bayes approach with an application in cancer biology. BMC Bioinformatics, Volume 13 (Number 1). Article no. 94. doi:10.1186/1471-2105-13-94 ISSN 1471-2105.

Hillman, Evette B. M, Rijpkema, Sjoerd, Carson, Danielle, Arasaradnam, Ramesh P., Wellington, Elizabeth M. H. and Amos, Gregory C. A. (2021) Manipulating the microbiome : an alternative treatment for bile acid diarrhoea. Microbiology Research, 12 (2). pp. 335-353. doi:10.3390/microbiolres12020023 ISSN 2036-7481.

Hilton, Sally, Bennett, Amanda J., Keane, Gary, Bending, G. D., Chandler, David, Stobart, Ron and Mills, P. R. (2013) Impact of shortened crop rotation of oilseed rape on soil and rhizosphere microbial diversity in relation to yield decline. PLoS One, Volume 8 (Number 4). e59859. doi:10.1371/journal.pone.0059859 ISSN 1932-6203.

Hilton, Sally, Picot, Emma, Schreiter, Susanne, Bass, David, Norman, Keith, Oliver, Anna E., Moore, Jonathan D., Mauchline, Tim H., Mills, Peter R., Teakle, Graham R., Clark, Ian. M., Hirsch, Penny. R., van der Gast, Christopher J. and Bending, G. D. (2021) Identification of microbial signatures linked to oilseed rape yield decline at the landscape scale. Microbiome, 9 . 19. doi:10.1186/s40168-020-00972-0 ISSN 2049-2618.

Hind, Charlotte K., Dowson, Christopher G., Sutton, J. Mark, Jackson, Thomas, Clifford, Melanie, Garner, R. Colin and Czaplewski, Lloyd (2019) Evaluation of a library of FDA-approved drugs for their ability to potentiate antibiotics against multidrug resistant Gram-negative pathogens. Antimicrobial Agents and Chemotherapy, 63 . e00769. doi:10.1128/AAC.00769-19 ISSN 0066-4804.

Ho, Po-Yi, Martins, Bruno M. C. and Amir, Ariel (2020) A mechanistic model of the regulation of division timing by the circadian clock in cyanobacteria. Biophysical Journal, 118 (12). pp. 2905-2913. doi:10.1016/j.bpj.2020.04.038 ISSN 0006-3495.

Hogg, Chloe, Panir, Kavita, Dhami, Priya, Rosser, Matthew, Mack, Matthias, Soong, Daniel, Pollard, Jeffrey W., Jenkins, Stephen J., Horne, Andrew W. and Greaves, Erin (2021) Macrophages inhibit and enhance endometriosis depending on their origin. Proceedings of the National Academy of Sciences of the United States of America, 118 (6). e2013776118. doi:10.1073/pnas.2013776118 ISSN 0027-8424.

(2009) Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. PLOS One, Vol.4 (No.7). doi:10.1371/journal.pone.0006072 ISSN 1932-6203.

Holmes, Antony, Kalvala, Sara and Whitworth, David E. (2010) Spatial simulations of myxobacterial development. PLoS Computational Biology, Vol.6 (No.2). e1000686. doi:10.1371/journal.pcbi.1000686 ISSN 1553-734X.

Holmes, Ian, Harris, Keith and Quince, Christopher (2012) Dirichlet multinomial mixtures : generative models for microbial metagenomics. PLoS One, Volume 7 (Number 2). Article number e30126. doi:10.1371/journal.pone.0030126 ISSN 1932-6203.

Holt, Kathryn E., Aanensen, David M. and Achtman, Mark (2022) Genomic population structures of microbial pathogens. Philosophical Transactions of the Royal Society B: Biological Sciences, 377 (1861). 20210230. doi:10.1098/rstb.2021.0230 ISSN 0962-8436.

Hothersall, Joanne, Lai, Sandie, Zhang, Nana, Godfrey, Rita E., Ruanto, Patcharawarin, Bischoff, Sarah, Robinson, Colin, Overton, Tim W., Busby, Stephen J. W. and Browning, Douglas F. (2022) Inexpensive protein overexpression driven by the NarL transcription activator protein. Biotechnology and Bioengineering, 119 (6). pp. 1614-1623. doi:10.1002/bit.28071 ISSN 0006-3592.

House, Thomas A. (2014) Epidemiological dynamics of Ebola outbreaks. eLife, Volume 3 . doi:10.7554/eLife.03908 ISSN 2050-084X.

Howat, Alexandra M., Vollmers, John, Taubert, Martin, Grob, Carolina, Dixon, Joanna L., Todd, Jonathan, Chen, Yin, Kaster, Anne-Kristin and Murrell, J. C. (J. Colin) (2018) Comparative genomics and mutational analysis reveals a novel XoxF-utilising methylotroph in the Roseobacter group isolated from the marine environment. Frontiers in Microbiology, 9 . 766. doi:10.3389/fmicb.2018.00766 ISSN 1664-302X.

Hrast, Martina, Jukič, Marko, Patin, Delphine, Tod, Julie, Dowson, Christopher G., Roper, David I., Barreteau, Hélène and Gobec, Stanislav (2018) In silico identification, synthesis and biological evaluation of novel tetrazole inhibitors of MurB. Chemical Biology & Drug Design, 91 (6). pp. 1101-1112. doi:10.1111/cbdd.13172 ISSN 1747-0285.

Hu, Qingfeng, Yu, Yan, Gu, Dongshi, Xie, Li, Chen, Xingrou, Xu, Ning, Ruan, Jennifer Jin, Dowson, Christopher G. and Ruan, Benfang Helen (2019) Precise Measurement of Time Dependent Cell Growth and Detection of Partial Drug Resistance in Infectious Microbial. ACS Infectious Diseases, 5 (7). pp. 1252-1263. doi:10.1021/acsinfecdis.9b00132 ISSN 2373-8227.

Huang, Junqi, Chew, Ting Gang, Gu, Ying, Palani, Saravanan, Kamnev, Anton, Martin, Douglas S., Carter, Nicholas J., Cross, R. A., Oliferenko, Snezhana and Balasubramanian, Mohan K. (2016) Curvature-induced expulsion of actomyosin bundles during cytokinetic ring contraction. eLife, 5 . e21383. doi:10.7554/eLife.21383 ISSN 2050-084X.

Huang, Le, Yang, Bowen, Yi, Haidong, Asif, Amina, Wang, Jiawei, Lithgow, Trevor, Zhang, Han, Minhas, Fayyaz ul Amir Afsar and Yin, Yanbin (2021) AcrDB : a database of anti-CRISPR operons in prokaryotes and viruses. Nucleic Acids Research, 49 (D1). D622-D629. doi:10.1093/nar/gkaa857 ISSN 0305-1048.

Hulin, Michelle T., Armitage, Andrew D., Vicente, Joana G., Holub, E. B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). The New Phytologist, 291 (2). pp. 672-696. doi:10.1111/nph.15182 ISSN 1469-8137.

Hunter, Paul J., Teakle, Graham R. and Bending, G. D. (2014) Root traits and microbial community interactions in relation to phosphorus availability and acquisition, with particular reference to Brassica. Frontiers in Plant Science, Volume 5 . doi:10.3389/fpls.2014.00027 ISSN 1664-462X.

Hänsch, Stephanie, Cilli, Elisabetta, Catalano, Giulioilda, Gruppioni, Giorgio, Bianucci, Raffaella, Stenseth, Nils C., Bramanti, Barbara and Pallen, Mark J. (2015) The pla gene, encoding plasminogen activator, is not specific to Yersinia pestis. BMC Research Notes, 8 (1). pp. 1-3. doi:10.1186/s13104-015-1525-x ISSN 1756-0500.

Iacovidou, Melissa, Barreaux, Priscille, Spencer, Simon E. F., Thomas, Matthew B., Gorsich, Erin E. and Rock, Kat S. (2022) Omitting age-dependent mosquito mortality in malaria models underestimates the effectiveness of insecticide-treated nets. PLoS Computational Biology, 18 (9). e1009540. doi:10.1371/journal.pcbi.1009540 ISSN 1553-7358.

Ijaz, Umer Zeeshan, Gundogdu, Ozan, Keating, Ciara, Eekert, Miriam van, Gibson, Walter, Parkhill, Julian, Abilahi, Faraji, Liseki, Benard, Nguyen, Viet-Anh, Sudgen, Steven, Quince, Christopher , Ensink, Jeroen H. J., Torondel, Belen and Walker, Alan W. (2022) Analysis of pit latrine microbiota reveals depth-related variation in composition, and key parameters and taxa associated with latrine fill-up rate. Frontiers in Microbiology, 13 . 960747. doi:10.3389/fmicb.2022.960747 ISSN 1664-302X.

Inahashi, Yuki, Zhou, Shanshan, Bibb, Maureen J., Song, Lijiang, Al-Bassam, Mahmoud M., Bibb, Mervyn J. and Challis, Gregory L. (2017) Watasemycin biosynthesis in Streptomyces venezuelae : thiazoline C-methylation by a type B radical-SAM methylase homologue. Chemical Science, 8 (4). pp. 2823-2831. doi:10.1039/c6sc03533g ISSN 2041-6520.

Ingham, Victoria A., Jones, Christopher M., Pignatelli, Patricia, Balabanidou, Vasileia, Vontas, John, Wagstaff, Simon C., Moore, Jonathan D. and Ranson, Hilary (2014) Dissecting the organ specificity of insecticide resistance candidate genes in Anopheles gambiae : known and novel candidate genes. BMC Genomics, Volume 15 (Number 1). Article number 1018. doi:10.1186/1471-2164-15-1018 ISSN 1471-2164.

Introini, Viola, Marin-Menendez, Alejandro, Nettesheim, Guilherme, Lin, Yen-Chun, Kariuki, Silvia N., Smith, Adrian L., Jean, Letitia, Brewin, John N., Rees, David C., Cicuta, Pietro, Rayner, Julian C. and Penman, Bridget S. (2022) The erythrocyte membrane properties of beta thalassaemia heterozygotes and their consequences for Plasmodium falciparum invasion. Scientific Reports, 12 (1). 8934. doi:10.1038/s41598-022-12060-4 ISSN 2045-2322.

Jackson-Smith, Elliot, Zioupos, Stephanie and Banerjee, Prithwish (2022) Bioresorbable vascular scaffolds versus conventional drug-eluting stents across time : a meta-analysis of randomised controlled trials. Open Heart, 9 (2). e002107. doi:10.1136/openhrt-2022-002107 ISSN 2053-3624.

Jacomin, Anne-Claire, Demeter, Amanda, Gul, Lejla, Lister, Ashleigh, Lipscombe, James, Invernizzi, Rachele, Branchu, Priscilla, Macaulay, Iain, Nezis, I. P. , Kingsley, Robert A., Korcsmaros, Tamas and Hautefort, Isabelle (2022) Computational prediction and experimental validation of Salmonella Typhimurium SopE-mediated fine-tuning of autophagy in intestinal epithelial cells. Frontiers in Cellular and Infection Microbiology, 12 . 834895. doi:10.3389/fcimb.2022.834895 ISSN 2235-2988.

Jadhav, Vaibhav, Hackl, Matthias, Druz, Aliaksandr, Shridhar, Smriti, Chung, Cheng-Yu, Heffner, Kelley M., Kreil, David, Betenbaugh, Mike, Shiloach, Joseph, Barron, Niall, Grillari, Johannes and Borth, Nicole (2013) CHO microRNA engineering is growing up : recent successes and future challenges. Biotechnology Advances, Volume 31 (Number 8). pp. 1501-1513. doi:10.1016/j.biotechadv.2013.07.007 ISSN 0734-9750.

Jameson, Eleanor, Doxey, Andrew C., Airs, Ruth, Purdy, Kevin J., Murrell, J. C. (J. Colin) and Chen, Yin (2016) Metagenomic data-mining reveals contrasting microbial populations responsible for trimethylamine formation in human gut and marine ecosystems. Microbial Genomics, 2 (9). doi:10.1099/mgen.0.000080 ISSN 2057-5858.

Jameson, Eleanor, Fu, Tiantian, Brown, Ian R., Paszkiewicz, Konrad, Purdy, Kevin J., Frank, Stefanie and Chen, Yin (2015) Anaerobic choline metabolism in microcompartments promotes growth and swarming of Proteus mirabilis. Environmental Microbiology, 18 . pp. 2886-2898. doi:10.1111/1462-2920.13059 ISSN 1462-2912.

Jameson, Eleanor, Quareshy, Mussa and Chen, Yin (2018) Methodological considerations for the identification of choline and carnitine-degrading bacteria in the gut. Methods, 149 . pp. 42-48. doi:10.1016/j.ymeth.2018.03.012 ISSN 1095-9130.

Jameson, Eleanor, Stephenson, Jason, Jones, Helen J., Millard, Andrew D., Kaster, K., Purdy, Kevin J., Airs, R., Murrell, J. C. (J. Colin) and Chen, Yin (2019) Deltaproteobacteria (Pelobacter) and Methanococcoides are responsible for choline-dependent methanogenesis in a coastal saltmarsh sediment. ISME Journal, 13 (2). pp. 277-289. doi:10.1038/s41396-018-0269-8 ISSN 1751-7362.

Jamy, Mahwash, Foster, Rachel, Barbera, Pierre, Czech, Lucas, Kozlov, Alexey, Stamatakis, Alexandros, Bending, G. D., Hilton, Sally, Bass, David and Burki, Fabien (2020) Long-read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity. Molecular Ecology Resources, 20 (2). pp. 429-443. doi:10.1111/1755-0998.13117 ISSN 1755-098X.

Janezic, Sandra, Dingle, Kate, Alvin, Joseph, Accetto, Tomaž, Didelot, Xavier, Crook, Derrick W., Lacy, D. Borden and Rupnik, Maja (2020) Comparative genomics of Clostridioides difficile toxinotypes identifies module-based toxin gene evolution. Microbial Genomics, 6 (10). doi:10.1099/mgen.0.000449 ISSN 2057-5858.

Jannat, Shopan, Mou, Haipeng, Zhang, Lili, Zhang, Changtong, Ma, Weiwei, Walsh, John A., Hu, Zhongyuan, Yang, Jinghua and Zhang, Mingfang (2017) Eukaryotic translation initiation factor 2B-beta (eIF2B β), a new class of plant virus resistance gene. The Plant Journal, 90 (5). pp. 929-940. doi:10.1111/tpj.13519 ISSN 0960-7412.

Jayal, Ambikesh, Johns, Benjamin E., Purdy, Kevin J. and Maddocks, Sarah E. (2017) Draft genome sequence of Pseudomonas aeruginosa ATCC 9027, originally isolated from an outer ear infection. Genome Announcements, 5 (48). e01397-17. doi:10.1128/genomeA.01397-17 ISSN 2169-8287.

Jayant, Kumar, Habib, Nagy, Huang, Kai W., Podda, Mauro, Warwick, Jane and Arasaradnam, Ramesh P. (2020) Immunological basis of genesis of hepatocellular carcinoma : unique challenges and potential opportunities through immunomodulation. Vaccines, 8 (2). pp. 1-12. 247. doi:10.3390/vaccines8020247 ISSN 2076-393X.

Jeanneret, Raphaël, Pushkin, Dmitri O., Kantsler, Vasily and Polin, Marco (2016) Entrainment dominates the interaction of microalgae with micron-sized objects. Nature Communications, 7 . 12518. doi:10.1038/ncomms12518 ISSN 2041-1723.

Jeanneret, Raphaël, Pushkin, Dmitri O. and Polin, Marco (2019) Confinement enhances the diversity of microbial flow fields. Physical Review Letters, 123 (24). 248102. doi:10.1103/PhysRevLett.123.248102 ISSN 0031-9007.

Jia, Jian-An, Zhang, Shuqin, Bai, Xin, Fang, Meng, Chen, Shipeng, Liang, Xiaotao, Zhu, Shanfeng, Wong, Danny Ka-Ho, Zhang, Anye, Feng, Jianfeng, Sun, Fengzhu and Gao, Chunfang (2022) Sparse logistic regression revealed the associations between HBV PreS quasispecies and hepatocellular carcinoma. Virology Journal, 19 (1). 114. doi:10.1186/s12985-022-01836-9 ISSN 1743-422X.

Jiang, Feng, Wang, Xia, Wang, Bei, Chen, Lihong, Zhao, Zhendong, Waterfield, Nicholas R., Yang, Guowei and Jin, Qi (2016) The pseudomonas aeruginosa Type VI secretion PGAP1-like effector induces host autophagy by activating endoplasmic reticulum stress. Cell Reports, 16 (6). pp. 1502-1509. doi:10.1016/j.celrep.2016.07.012 ISSN 2211-1247.

Jiang, Wen-Xin, Li, Ping-Yi, Chen, Xiu-Lan, Zhang, Yi-Shuo, Wang, Jing-Ping, Wang, Yan-Jun, Sheng, Qi, Sun, Zhong-Zhi, Qin, Qi-Long, Ren, Xue-Bing, Wang, Peng, Song, Xiao-Yan, Chen, Yin and Zhang, Yu-Zhong (2022) A pathway for chitin oxidation in marine bacteria. Nature Communications, 13 (1). 5899. doi:10.1038/s41467-022-33566-5 ISSN 2041-1723.

Jiménez, Diego Javier, Öztürk, Başak, Wei, Ren, Bugg, Timothy D. H., Amaya Gomez, Carol Viviana, Salcedo Galan, Felipe, Castro-Mayorga, Jinneth Lorena, Saldarriaga, Juan Fernando, Tarazona, Natalia Andrea and Zhou, Ning-Yi (2022) Merging plastics, microbes, and enzymes : highlights from an international workshop. Applied and Environmental Microbiology . doi:10.1128/aem.00721-22 ISSN 0099-2240.

Johnson, Connah G. M., Fletcher, Alexander G. and Soyer, Orkun S. (2022) ChemChaste : simulating spatially inhomogeneous biochemical reaction–diffusion systems for modeling cell–environment feedbacks. GigaScience, 11 . giac051. doi:10.1093/gigascience/giac051 ISSN 2047-217X.

Jolles, Anna, Gorsich, Erin E., Gubbins, Simon, Beechler, Brianna, Buss, Peter, Juleff, Nick, de Klerk-Lorist, Lin-Mari, Maree, Francois, Perez-Martin, Eva, van Schalkwyk, O. L., Scott, Katherine, Zhang, Fuquan, Medlock, Jan and Charleston, Bryan (2021) Endemic persistence of a highly contagious pathogen : foot-and-mouth disease in its wildlife host. Science, 374 (6563). pp. 104-109. doi:10.1126/science.abd2475 ISSN 0036-8075.

Jones, C. W. (Christopher W.), Wang, J. C., Briehl, R. W. and Taylor, Matthew S. (2005) Measuring forces between protein fibers by microscopy. Biophysical Journal, Vol.88 (No.4). pp. 2433-2441. doi:10.1529/biophysj.104.050856 ISSN 0006-3495.

Jones, Mathew W., Mantovani, Giuseppe, Blindauer, Claudia A., Ryan, Sinead M., Wang, Xuexuan, Brayden, David J. and Haddleton, David M. (2012) Direct peptide bioconjugation/PEGylation at tyrosine with linear and branched polymeric diazonium salts. Journal of the American Chemical Society, 134 (17). pp. 7406-7413. doi:10.1021/ja211855q ISSN 0002-7863.

Jones, Rebekah A., Shropshire, Holly, Zhao, Caimeng, Murphy, Andrew, Lidbury, Ian, Wei, Tao, Scanlan, David J. and Chen, Yin (2021) Phosphorus stress induces the synthesis of novel glycolipids in Pseudomonas aeruginosa that confer protection against a last-resort antibiotic. ISME Journal, 15 . pp. 3303-3314. doi:10.1038/s41396-021-01008-7 ISSN 1751-7362.

Jordan, Robert W., Smith, Nicholas A., Saithna, Adnan, Sprowson, Andrew P. and Foguet, Pedro (2014) Sensitivities, specificities, and predictive values of microbiological culture techniques for the diagnosis of prosthetic joint infection. BioMed Research International, Volume 2014 . pp. 1-5. Article number 180416. doi:10.1155/2014/180416 ISSN 2314-6133.

(2017) A comparative phase I study of combination, homologous subtype-C DNA, MVA, and Env gp140 protein/adjuvant HIV vaccines in two immunization regimes. Frontiers in Immunology, 8 . 149. doi:10.3389/fimmu.2017.00149 ISSN 1664-3224.

Joubert, Fanny, Yeo, R. Paul, Sharples, Gary J., Musa, Osama M., Hodgson, David R. W. and Cameron, Neil R. (2015) Preparation of an antibacterial poly(ionic liquid) graft copolymer of hydroxyethyl cellulose. Biomacromolecules, 16 (12). pp. 3970-3979. doi:10.1021/acs.biomac.5b01300 ISSN 1525-7797.

Júnior, José Renato Pattaro, Caruso, Ícaro Putinhon, de Sá, Jéssica Maróstica, Mezalira, Taniara Suelen, de Souza Lima, Diego, Pilau, Eduardo Jorge, Roper, David I., Fernandez, Maria Aparecida and Vicente Seixas, Flavio Augusto (2022) Characterization of secondary structure and thermal stability by biophysical methods of the D-alanyl,D-alanine ligase B protein from Escherichia coli. Protein & Peptide Letters, 29 (5). pp. 448-459. doi:10.2174/0929866529666220405104446 ISSN 0929-8665.

Kadir, Tuty Asmawaty Abdul, Mannan, Ahmad A., Kierzek, Andrzej M., McFadden, Johnjoe and Shimizu, Kazuyuki (2010) Modeling and simulation of the main metabolism in Escherichia coli and its several single-gene knockout mutants with experimental verification. Microbial Cell Factories, 9 . 88. doi:10.1186/1475-2859-9-88 ISSN 1475-2859.

Kamau, E., Onyango, C. O., Otieno, G. P., Kiyuka, P. K., Agoti, C. N., Medley, G. F., Cane, P. A., Nokes, D. James and Munywoki, P. K. (2019) An intensive, active surveillance reveals continuous invasion and high diversity of rhinovirus in households. Journal of Infectious Diseases, 219 (7). pp. 1049-1057. doi:10.1093/infdis/jiy621 ISSN 0022-1899.

Kamennaya, Nina, Geraki, Kalotina, Scanlan, David J. and Zubkov, Mikhail V. (2020) Accumulation of ambient phosphate into the periplasm of marine bacteria is proton motive force dependent. Nature Communications, 11 (1). 2642. doi:10.1038/s41467-020-16428-w ISSN 2041-1723.

Kantsler, Vasily, Ontañón-McDonald, Elena, Kuey, Cansu, Ghanshyam, Manjari J. , Roffin, Maria Chiara and Asally, Munehiro (2020) Pattern engineering of living bacterial colonies using meniscus-driven fluidic channels. ACS Synthetic Biology, 9 (6). pp. 1277-1283. doi:10.1021/acssynbio.0c00146 ISSN 2161-5063.

Kaplan, Elise, Greene, Nicholas P., Crow, Allister and Koronakis, Vassilis (2018) Insights into bacterial lipoprotein trafficking from a structure of LolA bound to the LolC periplasmic domain. Proceedings of the National Academy of Sciences of the United States of America, 115 (31). E7389-E7397. 201806822. doi:10.1073/pnas.1806822115 ISSN 0027-8424.

Karikari, Thomas K. and Aleksic, Jelena (2015) Neurogenomics : an opportunity to integrate neuroscience, genomics and bioinformatics research in Africa. Applied & translational genomics, 5 . pp. 3-10. doi:10.1016/j.atg.2015.06.004 ISSN 2212-0661.

Karikari, Thomas K. and Quansah, Emmanuel (2015) Neurogenomics : challenges and opportunities for Ghana. Applied & translational genomics, 5 . pp. 11-14. doi:10.1016/j.atg.2015.06.002 ISSN 2212-0661.

Karlikowska, Magdalena, Singh, Albel, Bhatt, Apoorva, Ott, Sascha, Bottrill, Andrew R., Besra, Gurdyal S. and Fullam, Elizabeth (2021) Biochemical and phenotypic characterisation of the Mycobacterium smegmatis transporter UspABC. The Cell Surface, 7 . 100052. doi:10.1016/j.tcsw.2021.100052 ISSN 2468-2330.

Karpinets, Tatiana V. , Greenwood , Duncan J., Sams, Carl E. and Ammons, John T. (2006) RNA:protein ratio of the unicellular organism as a characteristic of phosphorous and nitrogen stoichiometry and of the cellular requirement of ribosomes for protein synthesis. BMC Biology, Vol.4 (No.30). doi:10.1186/1741-7007-4-30 ISSN 1741-7007.

Kassaar, Omar, Schwarz-Linek, Ulrich, Blindauer, Claudia A. and Stewart, Alan J. (2015) Plasma free fatty acid levels influence Zn2+-dependent histidine-rich glycoprotein-heparin interactions via an allosteric switch on serum albumin. Journal of Thrombosis and Haemostasis, 13 (1). pp. 101-110. doi:10.1111/jth.12771 ISSN 1538-7933.

Kaur, Amandeep, Hernandez Fernaud, Juan Ramon, Aguilo-Ferretjans, Maria del Mar, Wellington, E. M. H. and Christie-Oleza, Joseph Alexander (2017) 100 days of marine Synechococcus – Ruegeria pomeroyi interaction, a detailed analysis of the exoproteome. Environmental Microbiology, 20 (2). pp. 785-799. doi:10.1111/1462-2920.14012 ISSN 1462-2912.

Kaur, Inderpreet, Purves, Joanne, Harwood, Matthew, Ketley, Julian M., Andrew, Peter W., Waldron, Kevin J. and Morrissey, Julie A. (2022) Role of horizontally transferred copper resistance genes in Staphylococcus aureus and Listeria monocytogenes. Microbiology, 168 (4). doi:10.1099/mic.0.001162 ISSN 1465-2080.

Kaverina, Irina and Straube, Anne (2011) Regulation of cell migration by dynamic microtubules. Seminars in Cell & Developmental Biology, Volume 22 (Number 9). pp. 968-974. doi:10.1016/j.semcdb.2011.09.017 ISSN 1084-9521.

Kay, Gemma L., Sergeant, Martin J., Giuffra, Valentina, Bandiera, Pasquale, Milanese, Marco, Bramanti, Barbara, Bianucci, Raffaella and Pallen, Mark J. (2014) Recovery of a medieval Brucella melitensis genome using shotgun metagenomics. mBio, Volume 5 (Number 4). Article number e01337-14. doi:10.1128/mBio.01337-14 ISSN 2150-7511.

Kay, Gemma L., Sergeant, Martin J., Zhou, Zhemin, Chan, Jacqueline, Millard, Andrew D., Quick, Joshua, Szikossy, Ildikó, Pap, Ildikó, Spigelman, Mark, Loman, Nicholas J., Achtman, Mark, Donoghue, Helen D. and Pallen, Mark J. (2015) Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe. Nature Communications, Volume 6 . pp. 1-9. Article number 6717. doi:10.1038/ncomms7717 ISSN 2041-1723.

Kearns, Daniel B., Luhur, Johana, Chan, Helena, Kachappilly, Benson, Mohamed, Ahmed, Morlot, Cécile, Awad, Milena, Lyras, Dena, Taib, Najwa, Gribaldo, Simonetta, Rudner, David Z. and Rodrigues, Christopher D.A. (2020) A dynamic, ring-forming MucB / RseB-like protein influences spore shape in Bacillus subtilis. PLoS Genetics, 16 (12). e1009246. doi:10.1371/journal.pgen.1009246 ISSN 1553-7390.

Keeling, Matt J., Dyson, Louise, Guyver-Fletcher, Glen, Holmes, Alexander, Semple, Malcolm G., Tildesley, Michael J. and Hill, Edward M. (2022) Fitting to the UK COVID-19 outbreak, short-term forecasts and estimating the reproductive number. Statistical Methods in Medical Research , 31 (9). pp. 1716-1737. doi:10.1177/09622802211070257 ISSN 0962-2802.

Keeling, Matthew James, Datta, Samik, Franklin, Daniel, Flatman, Ivor, Wattam, Andy, Brown, Mike and Budge, Giles E. (2017) Efficient use of sentinel sites : detection of invasive honeybee pests and diseases in the UK. Journal of The Royal Society Interface, 14 (129). 20160908. doi:10.1098/rsif.2016.0908 ISSN 1742-5689.

Kemen, Eric, Gardiner, Anastasia, Schultz-Larsen, Torsten, Kemen, Ariane C., Balmuth, Alexi L., Robert-Seilaniantz, Alexandre, Bailey, Kate, Holub, E. B., Studholme, David J., MacLean, Daniel and Jones, Jonathan D. G. (2011) Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana. PLoS Biology, Vol.9 (No.7). Article No. e1001094 . doi:10.1371/journal.pbio.1001094 ISSN 1545-7885.

Kendrick, Felicity, Evans, Neil D., Arnulf, Bertrand, Avet-Loiseau, Hervé, Decaux, Olivier, Dejoie, Thomas, Fouquet, Guillemette, Guidez, Stéphanie, Harel, Stéphanie, Hebraud, Benjamin, Javaugue, Vincent, Richez, Valentine, Schraen, Susanna, Touzeau, Cyrille, Moreau, Philippe, Leleu, Xavier, Harding, Stephen and Chappell, Michael J. (2017) Analysis of a compartmental model of endogenous immunoglobulin G metabolism with application to multiple myeloma. Frontiers in Physiology, 8 . 149. doi:10.3389/fphys.2017.00149 ISSN 1664-042X.

Kengmo Tchoupa, Arnaud, Watkins, Kate E., Jones, Rebekah A., Kuroki, Agnès, Alam, Mohammad Tauqeer, Perrier, Sébastien, Chen, Yin and Unnikrishnan, Meera (2020) The type VII secretion system protects Staphylococcus aureus against antimicrobial host fatty acids. Scientific Reports, 10 (1). 14838. doi:10.1038/s41598-020-71653-z ISSN 2045-2322.

Kerr, Rachel, Fairbairn, Julia A., Merritt, Andrew T. and Bugg, Timothy D. H. (2021) Peptidomimetic analogues of an Arg-Trp-x-x-Trp motif responsible for interaction of translocase MraY with bacteriophage phiX174 lysis protein E. Bioorganic & Medicinal Chemistry, 52 . 116502. doi:10.1016/j.bmc.2021.116502 ISSN 0968-0896.

(2020) Effectiveness of monovalent rotavirus vaccine against hospitalization with acute rotavirus gastroenteritis in Kenyan children. Clinical Infectious Diseases, 70 (11). pp. 2298-2305. doi:10.1093/cid/ciz664 ISSN 1537-6591.

Kim, Dae-Wi, Thawng, Cung Nawl, Lee, Kihyun, Wellington, E. M. H. and Cha, Chang-Jun (2019) A novel sulfonamide resistance mechanism by two-component flavin-dependent monooxygenase system in sulfonamide-degrading actinobacteria. Environment International, 127 . pp. 206-215. doi:10.1016/j.envint.2019.03.046 ISSN 0160-4120.

King, Hayley C., Khera-Butler , Tanya, James, Phillip, Oakley, Brian B., Erenso, Girume, Aseffa, Abraham, Knight, Robert, Wellington, E. M. H. and Courtenay, Orin (2017) Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape. PLoS One, 12 (3). e0173811. doi:10.1371/journal.pone.0173811 ISSN 1932-6203.

King, Jason S., Humphreys, Daniel, Rohn, Jennifer L., Unnikrishnan, Meera, Gutierrez, Maximilano G. and Mostowy, Serge (2020) The great host-pathogen war : U.K. cellular microbiology meeting 2020. Cellular Microbiology, 22 (11). e13248. doi:10.1111/cmi.13248 ISSN 1462-5814.

Kiskinis, Evangelos, Chatzeli, Lemonia, Curry, Edward, Kaforou, Myrsini, Frontini, Andrea, Cinti, Saverio, Montana, Giovanni, Parker, Malcolm G. and Christian, Mark (2014) RIP140 represses the “Brown-in-White” adipocyte program including a futile cycle of triacyclglycerol breakdown and synthesis. Molecular Endocrinology, Volume 28 (Number 3). pp. 344-356. doi:10.1210/me.2013-1254 ISSN 0888-8809.

Klug, Dana M., Idiris, Fahima I. M., Blaskovich, Mark A. T., von Delft, Frank, Dowson, Christopher G., Kirchhelle, Claas, Roberts, Adam P., Singer, Andrew C. and Todd, Matthew H. (2021) There is no market for new antibiotics : this allows an open approach to research and development. Wellcome Open Research, 6 . 146. doi:10.12688/wellcomeopenres.16847.1 ISSN 2398-502X.

Knight, Daniel R., Imwattana, Korakrit, Kullin, Brian, Guerrero-Araya, Enzo, Paredes-Sabja, Daniel, Didelot, Xavier, Dingle, Kate E., Eyre, David W., Rodríguez, César Cabrera and Riley, Thomas V. (2021) Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy. eLife, 10 . e64325. doi:10.7554/elife.64325 ISSN 2050-084X.

Kong, Chow-Seng, Ordoñez, Alexandra Almansa, Turner, Sarah, Tremaine, Tina, Muter, Joanne, Lucas, Emma S., Salisbury, Emma, Vassena, Rita, Tiscornia, Gustavo, Fouladi-Nashta, Ali, Hartshorne, Geraldine M., Brosens, Jan J. and Brighton, Paul (2021) Embryo biosensing by uterine natural killer cells determines endometrial fate decisions at implantation. The FASEB Journal, 35 (4). e21336. doi:10.1096/fj.202002217R ISSN 0892-6638.

Konstantopoulou, Marina, Slator, Paddy J., Taylor, Charles R., Wellington, E. M. H., Allison, Gordon, Harper, Andrea L., Bancroft, Ian and Bugg, Timothy D. H. (2017) Variation in susceptibility to microbial lignin oxidation in a set of wheat straw cultivars : influence of genetic, seasonal and environmental factors. Nordic Pulp and Paper Research Journal, 32 (4). pp. 493-507. ISSN 0283-2631.

Kothamachu, Varun B., Feliu, Elisenda, Cardelli, Luca and Soyer, Orkun S. (2015) Unlimited multistability and Boolean logic in microbial signalling. Journal of The Royal Society Interface, Volume 12 (Number 108). pp. 1-9. Article number 20150234. doi:10.1098/rsif.2015.0234 ISSN 1742-5689.

Kowalczyk, Agnieszka, Price, Oliver R., van der Gast, Christopher J., Finnegan, Christopher J., van Egmond, Roger A., Schäfer, Hendrik and Bending, G. D. (2016) Spatial and temporal variability in the potential of river water biofilms to degrade p-nitrophenol. Chemosphere, 164 . pp. 355-362. doi:10.1016/j.chemosphere.2016.08.095 ISSN 0045-6535.

Krašovec, Rok, Belavkin, Roman V., Aston, John A. D., Channon, Alastair, Aston, Elizabeth, Rash, Bharat M., Kadirvel, Manikandan, Forbes, Sarah and Knight, C. G. (Christopher G.) (2014) Mutation rate plasticity in rifampicin resistance depends on Escherichia coli cell–cell interactions. Nature Communications, Volume 5 . Article number 3742. doi:10.1038/ncomms4742 ISSN 2041-1723.

Krishnan, Nithya S., Abimbola, Aisha, Machan, Nandhini, Daga, Sunil, Gopalakrishnan, Kishore, Lam, ForTai, Tan, LamChin, Kashi, Habib, Imray, Christopher H.E., Zehnder, Daniel, Collins, Claire Elizabeth, Curtis, Rebecca, Higgins, Robert, Khovanova, N. A. and Briggs, David (2021) HLA antibody incompatible renal transplantation : long-term outcomes similar to deceased donor transplantation. Transplantation Direct, 7 (8). e732. doi:10.1097/TXD.0000000000001183 ISSN 2373-8731.

Kröber, Eileen, Mankowski, Anna and Schäfer, Hendrik (2022) Microorganisms associated with Sporobolus anglicus, an invasive dimethylsulfoniopropionate producing salt marsh plant, are an unrecognized sink for dimethylsulfide. Frontiers in Microbiology, 13 . 950460. doi:10.3389/fmicb.2022.950460 ISSN 1664-302X.

Kröber, Eileen and Schäfer, Hendrik (2019) Identification of proteins and genes expressed by Methylophaga thiooxydans during growth on dimethylsulfide and their presence in other members of the genus. Frontiers in Microbiology, 10 . 1132. doi:10.3389/fmicb.2019.01132 ISSN 1664-302X.

Kshirsagar, Meghana, Schleker, Sylvia, Carbonell, Jaime and Klein-Seetharaman, Judith (2015) Techniques for transferring host-pathogen protein interactions knowledge to new tasks. Frontiers in Microbiology, 6 . 36. doi:10.3389/fmicb.2015.00036 ISSN 1664-302X.

Kulick, Stefan, Moccia, Claudia, Didelot, Xavier, Falush, Daniel, Kraft, Christian and Suerbaum, Sebastian (2008) Mosaic DNA imports with interspersions of recipient sequence after natural transformation of Helicobacter pylori. PLOS One, Vol.3 (No.11). doi:10.1371/journal.pone.0003797 ISSN 1932-6203.

EUCLIDS Consortium (Including:

). (2022) Variation in CFHR3 determines susceptibility to meningococcal disease by controlling factor H concentrations. The American Journal of Human Genetics, 109 (9). pp. 1680-1691. doi:10.1016/j.ajhg.2022.08.001 ISSN 0002-9297.

Kumari, Pooja and Sampath, Karuna (2015) cncRNAs : Bi-functional RNAs with protein coding and non-coding functions. Seminars in Cell & Developmental Biology, 47-48 . pp. 40-51. doi:10.1016/j.semcdb.2015.10.024 ISSN 1084-9521.

Kunz, Cornelia, Friede, Tim, Parsons, Nicholas R., Todd, Susan and Stallard, Nigel (2014) Data-driven treatment selection for seamless phase II/III trials incorporating early-outcome data. Pharmaceutical Statistics, Volume 13 (Number 4). pp. 238-246. doi:10.1002/pst.1619 ISSN 1539-1604.

Kunz, Cornelia Ursula, Jörgens, Silke, Bretz, Frank, Stallard, Nigel, Van Lancker, Kelly, Xi, Dong, Zohar, Sarah, Gerlinger, Christoph and Friede, Tim (2020) Clinical trials impacted by the COVID-19 pandemic : adaptive designs to the rescue? Statistics in Biopharmaceutical Research, 12 (4). pp. 461-477. doi:10.1080/19466315.2020.1799857 ISSN 1946-6315.

Kura, Klodeta, Collyer, Benjamin, Toor, Jaspreet, Truscott, James E., Hollingsworth, T. Déirdre, Keeling, Matthew James and Anderson, Roy M. (2020) Policy implications of the potential use of a novel vaccine to prevent infection with Schistosoma mansoni with or without mass drug administration. Vaccine, 38 (28). pp. 4379-4386. doi:10.1016/j.vaccine.2020.04.078 ISSN 0264-410X.

Kuroki, Agnès, Kengmo Tchoupa, Arnaud, Hartlieb, Matthias, Peltier, Raoul, Locock, Katherine E. S., Unnikrishnan, Meera and Perrier, Sébastien (2019) Targeting intracellular, multi-drug resistant Staphylococcus aureus with guanidinium polymers by elucidating the structure-activity relationship. Biomaterials, 217 . 119249. doi:10.1016/j.biomaterials.2019.119249 ISSN 0142-9612.

Kuru, Erkin, Radkov, Atanas, Meng, Xin, Egan, Alexander, Alvarez, Laura, Dowson, Amanda, Booher, Garrett, Breukink, Eefjan, Roper, David I., Cava, Felipe, Vollmer, Waldemar, Brun, Yves and VanNieuwenhze, Michael S. (2019) Mechanisms of incorporation for D-amino acid probes that target peptidoglycan biosynthesis. ACS Chemical Biology, 14 (12). pp. 2745-2756. doi:10.1021/acschembio.9b00664 ISSN 1554-8929.

Kästle, Matthias, Merten, Camilla, Hartig, Roland, Kaehne, Thilo, Liaunardy-Jopeace, Ardiyanto, Woessner, Nadine M., Schamel, Wolfgang W., James, John R., Minguet, Susana, Simeoni, Luca and Schraven, Burkhart (2020) Tyrosine 192 within the SH2 domain of the Src-protein tyrosine kinase p56Lck regulates T-cell activation independently of Lck/CD45 interactions. Cell Communication and Signaling, 18 (1). 183. doi:10.1186/s12964-020-00673-z ISSN 1478-811X.

Lacey, Lauren, Daulton, Emma, Wicaksono, Alfian, Covington, James A. and Quenby, Siobhan (2020) Detection of Group B Streptococcus in pregnancy by vaginal volatile organic compound analysis : a prospective exploratory study. Translational Research, 216 . pp. 23-29. doi:10.1016/j.trsl.2019.09.002 ISSN 1931-5244.

Ladds, Graham, Zervou, Sevasti I., Vatish, Manu, Thornton, Steven and Davey, John (2009) Regulators of G protein signalling proteins in the human myometrium. European Journal of Pharmacology, Vol.610 (No.1-3). pp. 23-28. doi:10.1016/j.ejphar.2009.03.042 ISSN 0014-2999.

Landajuela, Ane, Braun, Martha, Martínez-Calvo, Alejandro, Rodrigues, Christopher D. A., Gomis Perez, Carolina, Doan, Thierry, Rudner, David Z., Wingreen, Ned S. and Karatekin, Erdem (2022) Membrane fission during bacterial spore development requires cellular inflation driven by DNA translocation. Current Biology, 32 (19). pp. 4186-4200. doi:10.1016/j.cub.2022.08.014 ISSN 0960-9822.

Langley, Gareth W., Cain, Ricky, Tyrrell, Jonathan M., Hinchliffe, Philip, Calvopiña, Karina, Tooke, Catherine L., Widlake, Emma, Dowson, Christopher G., Spencer, James, Walsh, Timothy R., Schofield, Christopher J. and Brem, Jürgen (2019) Profiling interactions of vaborbactam with metallo-β-lactamases. Bioorganic & Medicinal Chemistry Letters, 29 (15). pp. 1981-1984. doi:10.1016/j.bmcl.2019.05.031 ISSN 0960-894X.

Lanza, Ben and Parashar, D. (2021) Do support vector machines play a role in stratifying patient population based on cancer biomarkers? Archives of Proteomics and Bioinformatics, 2 (1). pp. 20-38. ISSN 2767-391X.

(2022) Emergence of methicillin resistance predates the clinical use of antibiotics. Nature, 602 . pp. 135-141. doi:10.1038/s41586-021-04265-w ISSN 0028-0836.

Laskaris, Paris, Sekine, Takuya and Wellington, E. M. H. (2012) Diversity analysis of Streptomycetes and associated phosphotranspherase genes in soil. PLoS ONE, Vol.7 (No.4). e35756. doi:10.1371/journal.pone.0035756 ISSN 1932-6203.

Lassalle, Florent, Dastgheib, Seyed M. M., Zhao, Fang-Jie, Zhang, Jun, Verbarg, Susanne, Frühling, Anja, Brinkmann, Henner, Osborne, Thomas H., Sikorski, Johannes, Balloux, Francois, Didelot, Xavier, Santini, Joanne M. and Petersen, Jörn (2021) Phylogenomics reveals the basis of adaptation of Pseudorhizobium species to extreme environments and supports a taxonomic revision of the genus. Systematic and Applied Microbiology, 44 (1). 126165. doi:10.1016/j.syapm.2020.126165 ISSN 0723-2020.

Latifi-Navid, Saeid, Ghorashi, Seyed Ali, Siavoshi, Farideh, Linz, Bodo, Massarrat, Sadegh, Khegay, Tanya, Salmanian, Ali-Hatef, Shayesteh, Ali Akbar, Masoodi, Mohsen, Ghanadi, Koroush, Ganji, Azita, Suerbaum, Sebastian, Achtman, Mark, Malekzadeh, Reza and Falush, Daniel (2010) Ethnic and geographic differentiation of helicobacter pylori within Iran. PLoS One, Volume 5 (Number 3). Article number e9645. doi:10.1371/journal.pone.0009645 ISSN 1932-6203.

Latva, Mira, Dedman, Craig J., Wright, Robyn J., Polin, Marco and Christie-Oleza, Joseph A. (2022) Microbial pioneers of plastic colonisation in coastal seawaters. Marine Pollution Bulletin, 179 . 113701. doi:10.1016/j.marpolbul.2022.113701 ISSN 0025-326X.

Ledda, Alice, Cummins, Martina, Shaw, Liam P., Jauneikaite, Elita, Cole, Kevin, Lasalle, Florent, Barry, Deborah, Turton, Jane, Rosmarin, Caryn, Anaraki, Sudy, Wareham, David, Stoesser, Nicole, Paul, John, Manuel, Rohini, Cherian, Benny P. and Didelot, Xavier (2022) Hospital outbreak of carbapenem-resistant Enterobacterales associated with a bla OXA-48 plasmid carried mostly by Escherichia coli ST399. Microbial Genomics, 8 (4). doi:10.1099/mgen.0.000675 ISSN 2057-5858.

Lee, Kihyun, Kim, Dae-Wi, Lee, Do-Hoon, Kim, Yong-Seok, Bu, Ji-Hye, Cha, Ju-Hee, Thawng, Cung Nawl, Hwang, Eun-Mi, Seong, Hoon Je, Sul, Woo Jun, Wellington, Elizabeth M. H., Quince, Christopher and Cha, Chang-Jun (2020) Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance. Microbiome, 8 (1). 2. doi:10.1186/s40168-019-0774-7 ISSN 2049-2618.

Lee, Sarah C., Collins, Richard, Lin, Yu-pin, Jamshad, Mohammed, Broughton, Claire E., Harris, Sarah A., Hanson, Benjamin S, Tognoloni, Cecilia, Parslow, Rosemary A., Terry, Ann E., Rodger, Alison, Smith, Corinne J., Edler, Karen J., Ford, Robert, Roper, David I. and Dafforn, Timothy R. (2019) Nano-encapsulated escherichia coli divisome anchor ZipA, and in complex with FtsZ. Scientific Reports, 9 (1). 18712. doi:10.1038/s41598-019-54999-x ISSN 2045-2322.

Leng, Daniel J., Greule, Anja, Cryle, Max J. and Tosin, Manuela (2021) Chemical probes reveal the timing of early chlorination in vancomycin biosynthesis. Chemical Communications, 57 (18). pp. 2293-2296. doi:10.1039/D0CC07421G ISSN 1359-7345.

Leptos, Kyriacos C., Wan, Kirsty Y., Polin, Marco, Tuval, Idan, Pesci, Adriana I. and Goldstein, Raymond E. (2013) Antiphase synchronization in a flagellar-dominance mutant of Chlamydomonas. Physical Review Letters, Volume 111 . Article number 158101. doi:10.1103/PhysRevLett.111.158101 ISSN 0031-9007.

Lepère, Cécile, Ostrowski, Martin, Hartmann, Manuela, Zubkov, Mikhail V. and Scanlan, David J. (2015) In situ associations between marine photosynthetic picoeukaryotes and potential parasites - a role for fungi? Environmental Microbiology Reports, 8 (4). pp. 445-451. doi:10.1111/1758-2229.12339 ISSN 1758-2229.

Leungtongkam, Udomluk, Thummeepak, Rapee, Kitti, Thawatchai, Tasanapak, Kannipa, Wongwigkarn, Jintana, Styles, Kathryn, Wellington, Elizabeth M. H., Millard, Andrew D., Sagona, Antonia P. and Sitthisak, Sutthirat (2020) Genomic analysis reveals high virulence and antibiotic resistance amongst phage susceptible Acinetobacter baumannii. Scientific Reports, 10 . 16154. doi:10.1038/s41598-020-73123-y ISSN 2045-2322.

Lewsey, Mathew, Surette, Monique, Robertson, Fiona C. , Ziebell, Heiko, Choi, Sun Hee , Ryu, Ki Hyun , Canto, Tomas, Palukaitis, Peter, Payne, Tina, Walsh, John A. and Carr, John P. (2009) The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant - Microbe Interactions, Vol.22 (No.6). pp. 642-654. doi:10.1094/MPMI-22-6-0642 ISSN 0894-0282.

Li, Chun-Yang, Chen, Xiu-Lan, Zhang, Dian, Wang, Peng, Sheng, Qi, Peng, Ming, Xie, Bin-Bin, Qin, Qi-Long, Li, Ping-Yi, Zhang, Xi-Ying, Su, Hai-Nan, Song, Xiao-Yan, Shi, Mei, Zhou, Bai-Cheng, Xun, Lu-Ying, Chen, Yin and Zhang, Yu-Zhong (2017) Structural mechanism for bacterial oxidation of oceanic trimethylamine into trimethylamine N -oxide. Molecular Microbiology, 103 (6). pp. 992-1003. doi:10.1111/mmi.13605 ISSN 0950-382X.

(2015) Ternary structure reveals mechanism of a membrane diacylglycerol kinase. Nature Communications, 6 (1). 10140 . doi:10.1038/ncomms10140 ISSN 2041-1723.

Li, Die, Chen, Jing, Hong, Mei, Wang, Yan, Haddleton, David M., Li, Guang-Zhao and Zhang, Qiang (2021) Cationic glycopolymers with aggregation-induced emission for the killing, imaging, and detection of bacteria. Biomacromolecules, 22 (5). pp. 2224-2232. doi:10.1021/acs.biomac.1c00298 ISSN 1526-4602.

Li, Shen, Oh, Byoung Chol, Chu, Chengyan, Arnold, Antje, Jablonska, Anna, Furtmüller, Georg J., Qin, Hua-Min, Boltze, Johannes, Magnus, Tim, Ludewig, Peter, Janowski, Mirosław, Brandacher, Gerald and Walczak, Piotr (2019) Induction of immunological tolerance to myelinogenic glial-restricted progenitor allografts. Brain, 142 (11). pp. 3456-3472. doi:10.1093/brain/awz275 ISSN 0006-8950.

Li, Shuyu, Spooner, Robert A. , Hampton, Randolph Y., Lord, Mike and Roberts, L. M. (Lynne M.) (2012) Cytosolic entry of Shiga-like toxin A chain from the yeast endoplasmic reticulum requires catalytically active Hrd1p. PLoS ONE, Vol.7 (No.7). e41119. doi:10.1371/journal.pone.0041119 ISSN 1932-6203.

Li, Stephen, Lam, Jenna, Souliotis, Leonidas, Alam, Mohammad Tauqeer and Constantinidou, Chrystala (2022) Posttranscriptional regulation in response to different environmental stresses in Campylobacter jejuni. Microbiology Spectrum, 10 (3). e00203-22. doi:10.1128/spectrum.00203-22 ISSN 2165-0497.

Li, Xiao, Wang, Juan, Shi, Mingxin, Wang, Weishan, Corre, Christophe and Yang, Keqian (2017) Evidence for the formation of ScbR/ScbR2 heterodimers and identification of one of the regulatory targets in Streptomyces coelicolor. Applied Microbiology and Biotechnology, 101 (13). pp. 5333-5340. ISSN 0175-7598.

Li, Zehua, Pearce, Amanda K., Du, Jianzhong, Dove, Andrew P. and O'Reilly, Rachel K. (2022) Uniform antibacterial cylindrical nanoparticles for enhancing the strength of nanocomposite hydrogels. Journal of Polymer Science, 359 . 131608. doi:10.1002/pol.20210853 ISSN 2642-4150.

Lidbury, Ian, Kimberley, George, Scanlan, David J., Murrell, J. C. (J. Colin) and Chen, Yin (2015) Comparative genomics and mutagenesis analyses of choline metabolism in the marine Roseobacter clade. Environmental Microbiology, 17 (12). pp. 5048-5062. doi:10.1111/1462-2920.12943 ISSN 1462-2912.

Lidbury, Ian, Mausz, Michaela A., Scanlan, David J. and Chen, Yin (2017) Identification of dimethylamine monooxygenase in marine bacteria reveals a metabolic bottleneck in the methylated amine degradation pathway. ISME Journal, 11 . pp. 1592-1601. doi:10.1038/ismej.2017.31 ISSN 1751-7362.

Lidbury, Ian, Murrell, J. C. (J. Colin) and Chen, Yin (2014) Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria. Proceedings of the National Academy of Sciences of the United States of America, Volume 111 (Number 7). pp. 2710-2715. doi:10.1073/pnas.1317834111 ISSN 0027-8424.

Lidbury, Ian, Murrell, J. C. (J. Colin) and Chen, Yin (2015) Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium : implications for marine carbon and nitrogen cycling. The ISME Journal, 9 . pp. 760-769. doi:10.1038/ismej.2014.149 ISSN 1751-7362.

Lidbury, Ian D. E. A., Scanlan, David J., Murphy, Andrew R. J., Christie-Oleza, Joseph A., Aguilo-Ferretjans, Maria M., Hitchcock, Andrew and Daniell, Tim J. (2022) A widely distributed phosphate-insensitive phosphatase presents a route for rapid organophosphorus remineralization in the biosphere. Proceedings of the National Academy of Sciences, 119 (5). e2118122119. doi:10.1073/pnas.2118122119 ISSN 1091-6490.

Links, Matthew G., Holub, E. B., Jiang, Rays H. Y., Sharpe, Andrew G., Hegedus, Dwayne, Beynon, Elena, Sillito, Dean, Clarke, Wayne E., Uzuhashi, Shihomi and Borhan, Mohammad Hossein (2011) De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes. BMC Genomics, Vol.12 (No.1). Article No. 503. doi:10.1186/1471-2164-12-503 ISSN 1471-2164.

Liu, Bowen, Chan, Helena, Bauda, Elda, Contreras-Martel, Carlos, Bellard, Laure, Villard, Anne-Marie, Mas, Caroline, Neumann, Emmanuelle, Fenel, Daphna, Favier, Adrien, Serrano, Monica, Henriques, Adriano O., Rodrigues, Christopher D.A. and Morlot, Cecile (2022) Structural insights into ring-building motif domains involved in bacterial sporulation. Journal of Structural Biology, 214 (1). 107813. doi:10.1016/j.jsb.2021.107813 ISSN 1047-8477.

Liu, Di, Mannan, Ahmad A., Han, Yichao, Oyarzún, Diego A. and Zhang, Fuzhong (2018) Dynamic metabolic control : towards precision engineering of metabolism. Journal of Industrial Microbiology & Biotechnology, 45 (7). pp. 535-543. 9. doi:10.1007/s10295-018-2013-9 ISSN 1476-5535.

Liu, Yujie, Claydon, Rory, Polin, Marco and Brumley, Douglas R. (2018) Transitions in synchronization states of model cilia through basal-connection coupling. Journal of The Royal Society Interface, 15 (147). doi:10.1098/rsif.2018.0450 ISSN 1742-5689.

Liu, Zhenqi, Yu, Dongqin, Song, Hualong, Postings, Miles L., Scott, Peter, Wang, Zhao, Ren, Jinsong and Qu, Xiaogang (2023) Enantioselective degrader for elimination of extracellular aggregation-prone proteins hIAPP associated with Type 2 Diabetes. ACS Nano . doi:10.1021/acsnano.2c11476 ISSN 1936-086X. (In Press)

Lizio, Maria Giovanna, Campana, Mario, De Poli, Matteo, Jefferies, Damien F., Cullen, William, Andrushchenko, Valery, Chmel, Nikola Paul, Bouř, Petr, Khalid, Syma, Clayden, Jonathan, Blanch, Ewan, Rodger, Alison and Webb, Simon J. (2021) Insight into the mechanism of action and peptide‐membrane interactions of Aib‐rich peptides : multitechnique experimental and theoretical analysis. Chembiochem, 22 (9). pp. 1656-1667. doi:10.1002/cbic.202000834 ISSN 1439-4227.

Llewellyn, David, Srirajaskanthan, Rajaventhan, Vincent, Royce, Guy, Catherine, Drakou, Eftychia E., Aylwin, Simon, Grossman, Ashley, Ramage, John K. and Dimitriadis, Georgios K. (2021) Calcitonin secreting neuroendocrine neoplasms of the lung : a systematic review and narrative synthesis. Endocrine Connections, 10 (4). pp. 447-461. doi:10.1530/EC-21-0071 ISSN 2049-3614.

Lockey, Christine, Edwards, Richard J., Roper, David I. and Dixon, Ann M. (2020) The extracellular domain of two-component system sensor kinase VanS from streptomyces coelicolor binds Vancomycin at a newly identified binding site. Scientific Reports, 10 (1). 5727. doi:10.1038/s41598-020-62557-z ISSN 2045-2322.

Lockey, Christine, Young, Hannah, Brown, Jessica and Dixon, Ann M. (2022) Characterization of interactions within the Igα/Igβ transmembrane domains of the human B-cell receptor provides insights into receptor assembly. Journal of Biological Chemistry, 298 (5). 101843. doi:10.1016/j.jbc.2022.101843 ISSN 0021-9258.

Lovell-Read, Francesca A., Parnell, Stephen, Cunniffe, Nik J. and Thompson, Robin N. (2023) Using ‘sentinel’ plants to improve early detection of invasive plant pathogens. PLoS Computational Biology, 19 (2). e1010884. doi:10.1371/journal.pcbi.1010884 ISSN 1553-7358.

Lowery, Richard, Gibson, Matthew I., Thompson, Richard C. and Fullam, Elizabeth (2015) Deuterated carbohydrate probes as ‘label-free’ substrates for probing nutrient uptake in mycobacteria by nuclear reaction analysis. Chemical communications, 51 (23). pp. 4838-4841. doi:10.1039/c4cc09588j ISSN 1359-7345.

Lysenko, Elena S., Clarke, Thomas B., Shchepetov, Mikhail, Ratner, Adam J., Roper, David I., Dowson, Christopher G. and Weiser, Jeffrey N. (2007) Nod1 signaling overcomes resistance of S. pneumoniae to opsonophagocytic killing. PL o S Pathogens , Vol.3 (No.8). pp. 1073-1081. doi:10.1371/journal.ppat.0030118 ISSN 1553-7366.

Lythgoe, Katrina A., Pellis, Lorenzo and Fraser, Christophe (2013) Is HIV short-sighted? Insights from a multistrain nested model. Evolution, Volume 67 (Number 10). pp. 2769-2782. doi:10.1111/evo.12166 ISSN 0014-3820.

FLU GOLD study group (Including: Löwensteyn, Yvette N., Nair, Harish, Nunes, Marta C., van Roessel, Ichelle, Vernooij, Femke S., Willemsen, Joukje, Bont, Louis J. and Mazur, Natalie I.). (2021) Estimated impact of maternal vaccination on global paediatric influenza-related in-hospital mortality : a retrospective case series. eClinicalMedicine, 37 . 100945. doi:10.1016/j.eclinm.2021.100945 ISSN 2589-5370.

Ma, Ruo-Chan, Chu, Yi-Xuan, Wang, Jing, Wang, Cheng, Leigh, Mary Beth, Chen, Yin and He, Ruo (2021) Stable-isotopic and metagenomic analyses reveal metabolic and microbial link of aerobic methane oxidation coupled to denitrification at different O2 levels. Science of The Total Environment, 764 . 142901. doi:10.1016/j.scitotenv.2020.142901 ISSN 0048-9697.

MacGregor-Chatwin, C., Jackson, P. J., Sener, M., Chidgey, J. W., Hitchcock, A., Qian, P., Mayneord, G. E., Johnson, M. P., Luthey-Schulten, Z., Dickman, M. J., Scanlan, David J. and Hunter, C. N. (2019) Membrane organization of photosystem I complexes in the most abundant phototroph on Earth. Nature Plants, 5 (8). pp. 879-889. doi:10.1038/s41477-019-0475-z ISSN 2055-0278.

MacQueen, Alice, Tian, Dacheng, Chang, Wenhan, Holub, E. B., Kreitman, Martin and Bergelson, Joy (2019) Population genetics of the highly polymorphic RPP8 gene family. Genes, 10 (9). e691. doi:10.3390/genes10090691 ISSN 2073-4425.

Maddocks, Sarah Elizabeth, Johns, Benjamin, Purdy, Kevin J. and Tucker, Nicholas (2015) Phenotypic and genotypic characteristics of small colony variants and their role in chronic infection. Microbiology Insights . pp. 15-23. doi:10.4137/MBI.S25800 ISSN 1178-6361.

Magombedze, Gesham, Shiri, Tinevimbo, Eda, Shigetoshi and Stabel, Judy R. (2017) Inferring biomarkers for Mycobacterium avium subsp. paratuberculosis infection and disease progression in cattle using experimental data. Scientific Reports, 7 . 44765. doi:10.1038/srep44765 ISSN 2045-2322.

Mahenthiralingam, Eshwar, Baldwin, Adam, Drevinek, Pavel, Vanlaere, Elke, Vandamme, Peter, LiPuma, John J. and Dowson, Christopher G. (2006) Multilocus sequence typing breathes life into a microbial metagenome. PLoS One, Vol.1 (No.1). doi:10.1371/journal.pone.0000017 ISSN 1932-6203.

Makori, Timothy O., Bargul, Joel L., Lambisia, Arnold W., Mwanga, Mike J., Murunga, Nickson, de Laurent, Zaydah R., Lewa, Clement S., Mutunga, Martin, Kellam, Paul, Cotten, Matthew, Nokes, D. James, Phan, My and Agoti, Charles N. (2023) Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012 – 2018. Virus Evolution, 9 (1). vead025. doi:10.1093/ve/vead025 ISSN 2057-1577.

Malina, J., Scott, Peter and Brabec, V. (2015) Shape-selective recognition of DNA abasic sites by metallohelices : inhibition of human AP endonuclease 1. Nucleic acids research, 43 (11). pp. 5297-5306. doi:10.1093/nar/gkv438 ISSN 0305-1048.

Mannan, Ahmad A., Liu, Di, Zhang, Fuzhong and Oyarzún, Diego A. (2017) Fundamental design principles for transcription-factor-based metabolite biosensors. ACS Synthetic Biology, 6 (10). pp. 1851-1859. doi:10.1021/acssynbio.7b00172 ISSN 2161-5063.

Mannan, Ahmad A., Toya, Yoshihiro, Shimizu, Kazuyuki, McFadden, Johnjoe, Kierzek, Andrzej M. and Rocco, Andrea (2015) Integrating kinetic model of E. coli with genome scale metabolic fluxes overcomes its open system problem and reveals bistability in central metabolism. PLoS One, 10 (10). e0139507. doi:10.1371/journal.pone.0139507 ISSN 1932-6203.

Maric, M., Maculins, T., De Piccoli, Giacomo and Labib, K. (2014) Cdc48 and a ubiquitin ligase drive disassembly of the CMG helicase at the end of DNA replication. Science, 346 (6208). p. 1253596. doi:10.1126/science.1253596 ISSN 0036-8075.

Markovic, Danijela, Bari, Muhammad F., Lu, B., Vatish, Manu and Grammatopoulos, Dimitris (2013) Corticotropin-releasing hormone interacts with interleukin-1 to regulate prostaglandin H synthase-2 expression in human myometrium during pregnancy and labor. Journal of Clinical Endocrinology & Metabolism, Volume 98 (Number 7). pp. 2864-2875. doi:10.1210/jc.2013-1094 ISSN 0021-972X.

Mars, Ruben A. T., Nicolas, Pierre, Ciccolini, Mariano, Reilman, Ewoud, Reder, Alexander, Schaffer, Marc, Mäder, Ulrike, Völker, Uwe, Dijl, Jan Maarten van and Denham, Emma (2015) Small regulatory RNA-induced growth rate heterogeneity of Bacillus subtilis. PLoS Genetics, Volume 11 (Number 3). pp. 1-27. Article number e1005046. doi:10.1371/journal.pgen.1005046 ISSN 1553-7390.

Marsh, Andrew, Casey-Green, Katherine, Probert, Fay, Withall, David M., Mitchell, Daniel A., Dilly, Suzanne J., James, Sean G., Dimitri, W., Ladwa, Sweta R. L., Taylor, Paul C. and Singer, Donald R. J. (2016) Simvastatin sodium salt and fluvastatin interact with human gap junction gamma-3 protein. PLoS One, 11 (2). pp. 1-27. e0148266. doi:10.1371/journal.pone.0148266 ISSN 1932-6203.

Martin, Liam T., Gurnani, Pratik, Zhang, Junliang, Hartlieb, Matthias, Cameron, Neil R., Eissa, Ahmed M. and Perrier, Sébastien (2019) Polydimethylsiloxane-based giant glycosylated polymersomes with tunable bacterial affinity. Biomacromolecules, 20 (3). pp. 1297-1307. doi:10.1021/acs.biomac.8b01709 ISSN 1525-7797.

Marton, Huba L., Kilbride, Peter, Ahmad, Ashfaq, Sagona, Antonia P. and Gibson, Matthew I. (2023) Anionic synthietic polymers prevent bacteriophage infection. Journal of the American Chemical Society . doi:10.1021/jacs.3c01874 ISSN 0002-7863. (In Press)

Marton, Huba L., Styles, Kathryn, Kilbride, Peter, Sagona, Antonia P. and Gibson, Matthew I. (2021) Polymer-mediated cryopreservation of bacteriophages. Biomacromolecules, 22 (12). pp. 5281-5289. doi:10.1021/acs.biomac.1c01187 ISSN 1525-7797.

Marttinen, Pekka, Baldwin, Adam, Hanage, William P., Dowson, Christopher G. and Mahenthiralingam, Eshwar (2008) Bayesian modeling of recombination events in bacterial populations. BMC Bioinformatics, Vol.9 (No.421). doi:10.1186/1471-2105-9-421 ISSN 1471-2105.

Marwick, Charis A, Hossain, Anower, Nogueira, Rita, Sneddon, Jacqueline, Kavanagh, Kim, Bennie, Marion, Seaton, R Andrew, Guthrie, Bruce and Malcolm, William (2022) Feedback of Antibiotic Prescribing in Primary Care (FAPPC) trial : results of a real-world cluster randomized controlled trial in Scotland, UK. Journal of Antimicrobial Chemotherapy, 77 (12). pp. 3291-3300. doi:10.1093/jac/dkac317 ISSN 0305-7453.

Mary, Isabelle, Garczarek, Laurence, Tarran, Glen A. , Kolowrat, Christian , Terry, Matthew J. , Scanlan, David J. , Burkill, Peter H. and Zubkov, Mikhail V. (2008) Diel rhythmicity in amino acid uptake by Prochlorococcus. Environmental Microbiology, Vol.10 (No.8). pp. 2124-2131. doi:10.1111/j.1462-2920.2008.01633.x ISSN 1462-2912.

Mathijssen, Arnold, Jeanneret, Raphaël and Polin, Marco (2018) Universal entrainment mechanism controls contact times with motile cells. Physical Review Fluids, 3 (3). 033103. doi:10.1103/PhysRevFluids.3.033103

Mausz, Michaela A., Airs, Ruth, Dixon, Joanna, Widdicombe, Claire, Tarran, Glen, Polimene, Luca, Dashfield, Sarah, Beale, Rachael, Scanlan, David J. and Chen, Yin (2022) Microbial uptake dynamics of choline and glycine betaine in coastal seawater. Limnology and Oceanography, 67 (5). pp. 1052-1064. doi:10.1002/lno.12056 ISSN 1541-5856.

McCormack, K., Rabindranath, K., Kilonzo, M., Valery, L., Fraser, C., McIntyre, L., Thomas, S., Rothnie, H., Fluck, N., Gould, I. and Waugh, N. (2007) Systematic review of the effectiveness of preventing and treating Staphylococcus aureus carriage in reducing peritoneal catheter-related infections. Health Technology Assessment, 11 (23). doi:10.3310/hta11230 ISSN 1366-5278.

McDonald, Sarah M., Sarno, Diana, Scanlan, David J. and Zingone, Adriana (2007) Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle. Aquatic Microbial Ecology, Volume 50 (Number 1). pp. 75-89. doi:10.3354/ame01148 ISSN 0948-3055.

McDowell, A. (Andrew), Barnard, E. (Emma), Nagy, I. (István), Gao, Anna, Tomida, Shuta, Li, Huiying, Eady, Anne, Cove, Jonathan, Nord, Carl Erik and Patrick, Sheila (2012) An expanded multilocus sequence typing scheme for propionibacterium acnes : investigation of 'pathogenic', 'commensal' and antibiotic resistant strains. PLoS ONE, Vol.7 (Vol.7). e41480. doi:10.1371/journal.pone.0041480 ISSN 1932-6203.

Meadows, John C. and Millar, Jonathan B. A. (2008) Latrunculin A delays anaphase onset in fission yeast by disrupting an ase1-independent pathway controlling mitotic spindle stability. Molecular Biology of the Cell, Vol.19 (No.9). pp. 3713-3723. doi:10.1091/mbc.E08-02-0164 ISSN 1059-1524.

Medema, Marnix H, Trefzer, Axel, Kovalchuk, Andriy, van den Berg, Marco, Müller, Ulrike, Heijne, Wilbert, Wu, Liang, Alam, Mohammad T., Ronning, Catherine M, Nierman, William C, Bovenberg, Roel A L, Breitling, Rainer and Takano, Eriko (2010) The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways. Genome Biology and Evolution, 2 . pp. 212-24. doi:doi: 10.1093/gbe/evq013 ISSN 1759-6653.

Mendum, Tom A., Newcombe, Jane, Mannan, Ahmad A., Kierzek, Andrzej M. and McFadden, Johnjoe (2011) Interrogation of global mutagenesis data with a genome scale model of Neisseria meningitidis to assess gene fitness in vitro and in sera. Genome Biology, 12 . R127. doi:10.1186/gb-2011-12-12-r127 ISSN 1474-760X.

Menon, Navya, Richmond, Daniel, Rahman, Mohammad Rejaur and Menon, Binuraj R. K. (2022) Versatile and facile one-pot biosynthesis for amides and carboxylic acids in E. coli by engineering auxin pathways of plant microbiomes. ACS Catalysis, 12 (4). pp. 2309-2319. doi:10.1021/acscatal.1c04901 ISSN 2155-5435.

Micelli, Carmina, Dai, Yunfei, Raustad, Nicole, Isberg, Ralph R., Dowson, Christopher G., Lloyd, Adrian J., Geisinger, Edward, Crow, Allister and Roper, David I. (2023) A conserved zinc-binding site in Acinetobacter baumannii PBP2 required for elongasome-directed bacterial cell shape. Proceedings of the National Academy of Sciences of the United States of America, 120 (8). e2215237120. doi:10.1073/pnas.2215237120 ISSN 0027-8424.

Michalopoulou, Vassiliki A., Vicente, Joana G., Studholme, David J. and Sarris, Panagiotis F. (2018) Draft genome sequences of pathotype strains for three pathovars belonging to three Xanthomonas species. Microbiology Resource Announcements, 7 (12). e00923-18. doi:10.1128/MRA.00923-18 ISSN 2576-098X.

Michieletto, Davide, Marenduzzo, Davide and Orlandini, Enzo (2015) Is the kinetoplast DNA a percolating network of linked rings at its critical point? Physical Biology, Volume 12 (Number 3). pp. 1-8. 036001. doi:10.1088/1478-3975/12/3/036001 ISSN 1478-3975.

Michniewski, Slawomir, Redgwell, Tamsin, Grigonyte, Aurelija, Rihtman, Branko, Aguilo‐Ferretjans, Maria, Christie‐Oleza, Joseph, Jameson, Eleanor, Scanlan, David J. and Millard, Andrew D. (2019) Riding the wave of genomics to investigate aquatic coliphage diversity and activity. Environmental Microbiology, 21 (6). pp. 2112-2128. doi:10.1111/1462-2920.14590 ISSN 1462-2912.

Michniewski, Slawomir, Redgwell, Tamsin, Scanlan, David J. and Millard, Andrew D. (2017) Draft genome sequence of Bacteriophage vB_Eco_swan01. Genome Announcements, 5 (28). pp. 1-17. e00501. doi:10.1128/genomeA.00501-17 ISSN 2169-8287.

Mikhaylina, Alevtina, Ksibe, Amira Z., Wilkinson, Rachael C., Smith, Darbi, Marks, Eleanor, Coverdale, James P. C., Fülöp, Vilmos, Scanlan, David J. and Blindauer, Claudia A. (2022) A single sensor controls large variations in zinc quotas in a marine cyanobacterium. Nature Chemical Biology, 18 . pp. 869-877. doi:10.1038/s41589-022-01051-1 ISSN 1552-4450.

Mikhaylina, Alevtina, Scott, Luke, Scanlan, David J. and Blindauer, Claudia A. (2022) A metallothionein from an open ocean cyanobacterium removes zinc from the sensor protein controlling its transcription. Journal of Inorganic Biochemistry, 230 . 111755. doi:10.1016/j.jinorgbio.2022.111755 ISSN 0162-0134.

Miles, Jennifer A., Machattou, Petrina, Nevin-Jones, David, Webb, Michael E., Millard, Andrew, Scanlan, David J. and Taylor, Paul C. (2019) Identification of a cyanobacterial aldehyde dehydrogenase that produces retinoic acid in vitro. Biochemical and Biophysical Research Communications, 510 (1). pp. 27-34. doi:10.1016/j.bbrc.2018.12.171 ISSN 0006-291X.

Millard, Andrew D., Hands-Portman, Ian and Zwirglmaier, Katrin (2014) Morphotypes of virus-like particles in two hydrothermal vent fields on the East Scotia Ridge, Antarctia. Bacteriophage, Volume 4 (Number 1). Article number e28732 . doi:10.4161/bact.28732 ISSN 2159-7073.

Millard, Andrew D. and Mann, Nicholas H. (2006) A temporal and spatial investigation of cyanophage abundance in the Gulf of Aqaba Red Sea. Journal of the Marine Biological Association of the United Kingdom, Vol.86 (No.3). pp. 507-515. doi:10.1017/S0025315406013415 ISSN 0025-3154.

Millard, Andrew D., Scanlan, David J., Gallagher, Connor, Marsh, Andrew and Taylor, Paul C. (2014) Unexpected evolutionary proximity of eukaryotic and cyanobacterial enzymes responsible for biosynthesis of retinoic acid and its oxidation. Molecular BioSystems, 10 (3). pp. 380-383. doi:10.1039/c3mb70447e ISSN 1742-206X.

Miller, Kate M., Lamagni, Theresa, Hay, Roderick, Cannon, Jeffrey W., Marks, Michael, Bowen, Asha C., Kaslow, David C., Cherian, Thomas, Seale, Anna C., Pickering, Janessa, Daw, Jessica N., Moore, Hannah C., Van Beneden, Chris, Carapetis, Jonathan R. and Manning, Laurens (2022) Standardization of epidemiological surveillance of group A streptococcal cellulitis. Open Forum Infectious Diseases, 9 (Supplement_1). S25-S30. doi:10.1093/ofid/ofac267 ISSN 2328-8957.

Mitchell, Daniel A., Zhang, Qiang , Voorhaar, Lenny, Haddleton, David M., Herath, Shan, Gleinich, Anne S., Randeva, Harpal S., Crispin, Max, Lehnert, Hendrik, Wallis, Russell, Patterson, Steven and Becer, C. Remzi (2017) Manipulation of cytokine secretion in human dendritic cells using glycopolymers with picomolar affinity for DC-SIGN. Chemical Science, 8 (10). pp. 6974-6980. doi:10.1039/c7sc01515a ISSN 2041-6520.

Mohammed, Khadija Said, Kibinge, Nelson, Prins, Pjotr, Agoti, Charles N., Cotten, Matthew, Nokes, D. James, Brand, Samuel and Githinji, George (2018) Evaluating the performance of tools used to call minority variants from whole genome short-read data. Wellcome Open Research, 3 . 21. doi:10.12688/wellcomeopenres.13538.2 ISSN 2398-502X.

Mombrikotb, Shorok B., Van Agtmaal, Maaike, Johnstone, Emma, Crawley, Michael J., Gweon, Hyun S., Griffiths, Robert I. and Bell, Thomas (2022) The interactions and hierarchical effects of long‐term agricultural stressors on soil bacterial communities. Environmental Microbiology Reports . doi:10.1111/1758-2229.13106 ISSN 1758-2229.

Monaghan, Emma M., Prosser, Naomi S., Witt, Jessica D., Lewis, Katharine E., Nabb, Elizabeth, Keeling, Matt J., Purdy, Kevin J. and Green, Laura E. (2021) Impact of strain variation of Dichelobacter nodosus on disease severity and presence in sheep flocks in England. Frontiers In Veterinary Science, 8 . 713927. doi:10.3389/fvets.2021.713927 ISSN 2297-1769.

Moodley, Yoshan, Linz, Bodo, Bond, Robert P., Nieuwoudt, Martin, Soodyall, Himla, Schlebusch, Carina M., Bernhöft, Steffi, Hale, J. (James), Suerbaum, Sebastian, Mugisha, Lawrence, Van der Merwe, Schalk W. and Achtman, Mark (2012) Age of the association between Helicobacter pylori and man. PLoS Pathogens, Volume 8 (Number 5). Article number e1002693. doi:10.1371/journal.ppat.1002693 ISSN 1553-7374.

Moore, Sam, Hill, Edward M., Dyson, Louise, Tildesley, Michael J. and Keeling, Matt J. (2022) Retrospectively modeling the effects of increased global vaccine sharing on the COVID-19 pandemic. Nature Medicine, 28 . pp. 2416-2423. doi:10.1038/s41591-022-02064-y ISSN 1078-8956.

Moore, Simon J., Lai, Hung-En, Chee, Soo-Mei, Toh, Ming, Coode, Seth, Chengan, Kameshwari, Capel, Patrick, Corre, Christophe, de los Santos, Emmanuel L. C. and Freemont, Paul S. (2021) A streptomyces venezuelae cell-free toolkit for synthetic biology. ACS Synthetic Biology, 10 (2). pp. 402-411. doi:10.1021/acssynbio.0c00581 ISSN 2161-5063.

Mora-Santos, Maria, Hervas-Aguilar, Maria-America, Sewart, Katharina, Lancaster, Theresa C., Meadows, John C. and Millar, Jonathan B. A. (2016) Bub3-Bub1 binding to Spc7/KNL1 toggles the spindle checkpoint switch by licensing the interaction of Bub1 with Mad1-Mad2. Current Biology, 26 (19). pp. 2642-2650. doi:10.1016/j.cub.2016.07.040 ISSN 0960-9822.

Morcrette, Helen, Kovacs-Simon, Andrea, Tennant, Richard K., Love, John, Wagley, Sariqa, Yang, Zheng R., Studholme, David J., Soyer, Orkun S., Champion, Olivia L., Butler, Clive S. and Titball, Richard W. (2020) Campylobacter jejuni 11168H exposed to penicillin forms persister cells and cells with altered redox protein activity. Frontiers in Cellular and Infection Microbiology, 10 . 565975. doi:10.3389/fcimb.2020.565975 ISSN 2235-2988.

Morelli, Giovanna, Didelot, Xavier, Kusecek, Barica, Schwarz, Sandra, Bahlawane, Christelle, Falush, Daniel, Suerbaum, Sebastian and Achtman, Mark (2010) Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families. PL o S Genetics, Vol.6 (No.7). doi:10.1371/journal.pgen.1001036 ISSN 1553-7390.

(2010) Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nature Genetics, 42 (12). pp. 1140-1143. doi:10.1038/ng.705 ISSN 1061-4036.

Morgan, Ann W., Barrett , Jennifer H., Griffiths, Bridget, Subramanian, Deepak , Robinson, Jim I. , Keyte, Viki H., Ali, Manir, Jones, E. A. (Elizabeth A.), Old, R. W., Ponchel, Frederique , Boylston, Arthur W., Deva Situnayake, R, Markham, Alexander F, Emery, Paul and Isaacs, John D. (2005) Analysis of Fcγ receptor haplotypes in rheumatoid arthritis: FCGR3A remains a major susceptibility gene at this locus, with an additional contribution from FCGR3B. Arthritis Research & Therapy, Vol.8 (No.R5). doi:10.1186/ar1847 ISSN 1478-6354.

Morobe, John Mwita, Kamau, Everlyn, Murunga, Nickson, Gatua, Winfred, Luka, Martha M., Lewa, Clement, Cheruiyot, Robinson, Mutunga, Martin, Odundo, Calleb, Nokes, D. James and Agoti, Charles N. (2021) Trends and intensity of Rhinovirus invasions in Kilifi, coastal Kenya, over a 12-year period, 2007–2018. Open Forum Infectious Diseases, 8 (12). ofab571. doi:10.1093/ofid/ofab571 ISSN 2328-8957.

Moroz, Olga V., Burkitt, William I., Wittkowski, Helmut, He, Wei, Ianoul, Anatoli, Novitskaya, Vera , Xie, Jingjing, Polyakova, Oxana, Lednev, Igor K. , Shekhtman, Alexander, Derrick, Peter J. , Bjoerk, Per, Foell, Dirk and Bronstein, Igor B. (2009) Both Ca2+ and Zn2+ are essential for S100A12 protein oligomerization and function. BMC Biochemistry, Vol.10 (No.11). doi:10.1186/1471-2091-10-11 ISSN 1471-2091.

Morris, Kyle L., Zibaee, Shahin, Chen, Lin, Goedert, Michel, Sikorski, Pawel and Serpell, Louise C. (2013) The structure of cross-β tapes and tubes formed by an octapeptide, αSβ1. Angewandte Chemie International Edition, 52 (8). pp. 2279-2283. doi:10.1002/anie.201207699 ISSN 1521-3773.

Mos, Magdalena, Godfrey, Emma L., Esparza Franco, Manuel A., Richardson, Kathryn, Davey, John and Ladds, Graham (2013) The role of the RACK1 ortholog Cpc2p in modulating pheromone-induced cell cycle arrest in fission yeast. PLoS One, Volume 8 (Number 7). Article number e65927. doi:10.1371/journal.pone.0065927 ISSN 1932-6203.

Moseng, Mitchell A., Lyu, Meinan, Pipatpolkai, Tanadet, Glaza, Przemyslaw, Emerson, Corey C., Stewart, Phoebe L., Stansfeld, Phillip J. and Yu, Edward W. (2021) Cryo-EM structures of CusA reveal a mechanism of metal-ion export. mBio, 12 (2). e00452-21. doi:10.1128/mBio.00452-21 ISSN 2150-7511.

Mughal, Sadaf Rasheed, Niazi, Sadia Ambreen, Do, Thuy, Gilbert, Steven C., Didelot, Xavier, Radford, David R. and Beighton, David (2023) Genomic diversity among Actinomyces naeslundii strains and closely related species. Microorganisms, 11 (2). 254. doi:10.3390/microorganisms11020254 ISSN 2076-2607.

Mulchandani, Ranya, Brehmer, Clare, Butt, Saira, Vishram, Bhavita, Harrison, Melissa, Marchant, Elizabeth, Ferris, Simon, Jorgensen, Frieda, Smith, Robert A., Godbole, Gauri, Jenkins, Claire, Dallman, Timothy J., Verlander, Neville Q., Phin, Nick, Todkill, Daniel, Gharbia, Saheer E. and Hawker, Jeremy (2021) Outbreak of Shiga toxin-producing Escherichia coli O157 linked with consumption of a fast-food product containing imported cucumbers, United Kingdom, August 2020. International Journal of Infectious Diseases, 110 (S1). S62-S68. doi:10.1016/j.ijid.2021.04.001 ISSN 1201-9712.

Murphy, Andrew, Scanlan, David J. , Chen, Yin, Adams, Nathan B. P., Cadman, William A., Bottrill, Andrew R., Bending, G. D., Hammond, John P., Hitchcock, Andrew, Wellington, Elizabeth M. H. and Lidbury, Ian D. E. A. (2021) Transporter characterisation reveals aminoethylphosphonate mineralisation as a key step in the marine phosphorus redox cycle. Nature Communications, 12 (1). 4554. doi:10.1038/s41467-021-24646-z ISSN 2041-1723.

Murphy, Andrew, Scanlan, David J. , Chen, Yin, Bending, G. D., Hammond, John P., Wellington, Elizabeth M. H. and Lidbury, Ian (2022) 2-Aminoethylphosphonate utilization in pseudomonas putida BIRD-1 is controlled by multiple master regulators. Environmental Microbiology, 24 (4). pp. 1902-1917. doi:10.1111/1462-2920.15959 ISSN 1462-2912.

Murphy, Andrew, Travis, Emma Rachel, Hibberd, Victoria, Porter, David and Wellington, Elizabeth M. H. (2020) Evaluation of a fecal shedding test to detect badger social groups infected with Mycobacterium bovis. Journal of Clinical Microbiology, 59 (1). e01226-20. doi:10.1128/JCM.01226-20 ISSN 0095-1137.

Murray, Gregory P. D., Lissenden, Natalie, Jones, Jeff, Voloshin, Vitaly, Toé, K. Hyacinthe, Sherrard-Smith, Ellie, Foster, Geraldine M., Churcher, Thomas S., Parker, Josephine E. A., Towers, Catherine E., N'Falé, Sagnon, Guelbeogo, Wamdaogo M., Ranson, Hilary, Towers, David P. and McCall, Philip J. (2019) Barrier bednets target malaria vectors and expand the range of usable insecticides. Nature Microbiology, 5 . pp. 40-47. doi:10.1038/s41564-019-0607-2 ISSN 2058-5276.

Muscatt, George, Hilton, Sally, Raguideau, Sébastien, Teakle, Graham R., Lidbury, Ian, Wellington, Elizabeth M. H., Quince, Christopher, Millard, Andrew D., Bending, Gary D. and Jameson, Eleanor (2022) Crop management shapes the diversity and activity of DNA and RNA viruses in the rhizosphere. Microbiome, 10 (1). 181. doi:10.1186/s40168-022-01371-3 ISSN 2049-2618.

Muthumeenakshi, S., Goldstein, Alan L., Stewart, Alison and Whipps, J. M. (2001) Molecular studies on intraspecific diversity and phylogenetic position of Coniothyrium minitans. Mycological Research, Vol.10 (No.9). pp. 1065-1074. doi:10.1017/S0953756201004440 ISSN 0953-7562.

(2020) Rotavirus group : a genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018. BMC Infectious Diseases, 20 . 504. doi:10.1186/s12879-020-05230-0 ISSN 1471-2334.

(2018) Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis. Nature Communications, 9 (1). 5034 . doi:10.1038/s41467-018-07368-7 ISSN 2041-1723.

Möhlmann, Tim W. R., Keeling, Matthew James, Wennergren, Uno, Favia, Guido, Santman-Berends, Inge, Takken, Willem, Koenraadt, Constantianus J. M. and Brand, Samuel (2021) Biting midge dynamics and bluetongue transmission : a multiscale model linking catch data with climate and disease outbreaks. Scientific Reports, 11 (1). 1892. doi:10.1038/s41598-021-81096-9 ISSN 2045-2322.

Møller-Olsen, Christian, Ho, Siu Fung, Shukla, Ranti Dev, Feher, Tamas and Sagona, Antonia P. (2018) Engineered K1F bacteriophages kill intracellular Escherichia coli K1 in human epithelial cells. Scientific Reports, 8 . 17559. doi:10.1038/s41598-018-35859-6 ISSN 2045-2322.

Naguib, Marwa, Feldman, Nicolás, Zarodkiewicz, Paulina, Shropshire, Holly, Biamis, Christina, El-Halfawy, Omar M., McCain, Julia, Dezanet, Clément, Décout, Jean-Luc, Chen, Yin, Cosa, Gonzalo and Valvano, Miguel A. (2022) An evolutionary conserved detoxification system for membrane lipid–derived peroxyl radicals in Gram-negative bacteria. PLoS Biology, 20 (5). e3001610. doi:10.1371/journal.pbio.3001610 ISSN 1545-7885.

Nale, Janet Y., Thanki, Anisha M., Rashid, Srwa J., Shan, Jinyu, Vinner, Gurinder K., Dowah, Ahmed S. A., Cheng, Jeffrey K. J., Sicheritz-Pontén, Thomas and Clokie, Martha R. J. (2022) Diversity, dynamics and therapeutic application of Clostridioides difficile bacteriophages. Viruses , 14 (12). 2772. doi:10.3390/v14122772 ISSN 1999-4915.

Napit, Indra B., Shrestha, Dilip, Bishop, Jon, Choudhury, Sopna, Dulal, Santosh, Gill, Paramjit, Gkini, Eleni, Gwyther, Holly, Hagge, Deanna A., Neupane, Karuna, Sartori, Jo, Slinn, Gemma, Watson, Samuel I. and Lilford, Richard (2021) An individual randomised efficacy trial of autologous blood products, leukocyte and platelet-rich fibrin (L-PRF), to promote ulcer healing in leprosy in Nepal : the TABLE trial protocol. Trials, 22 (1). 453. doi:10.1186/s13063-021-05392-5 ISSN 1745-6215.

Narayanan, Priya Lakshami, Raza, Shan-e-Ahmed, Hall, Allison H., Marks, Jeffrey R. , King, Lorraine , West, Robert B. , Hernandez, Lucia , Guppy, Naomi , Dowsett, Mitch , Gusterson, Barry , Maley, Carlo , Hwang, E. Shelley and Yuan, Yinyin (2021) Unmasking the immune microecology of ductal carcinoma in situ with deep learning. npj Breast Cancer , 7 . 19. doi:10.1038/s41523-020-00205-5 ISSN 2374-4677.

Nelson, A. C. (Andrew Christopher), Mould, Arne W., Bikoff, Elizabeth K. and Robertson, Elizabeth J. (2017) Mapping the chromatin landscape and Blimp1 transcriptional targets that regulate trophoblast differentiation. Scientific Reports, 7 (1). 6793. doi:10.1038/s41598-017-06859-9 ISSN 2045-2322.

Neufeld, Josh D. , Boden, Rich, Moussard, Hélène, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2008) Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment. Applied and Environmental Microbiology, Vol.74 (No.23). pp. 7321-7328. doi:10.1128/AEM.01266-08 ISSN 0099-2240.

Nev, Olga and Berg, Hugo van den (2018) Holling Type I versus Holling Type II functional responses in Gram-negative bacteria. Transactions of Mathematics and Its Applications, 2 (1). pp. 1-19. doi:10.1093/imatrm/tny001 ISSN 2398-4945.

Nev, Olga and Berg, Hugo van den (2017) Mathematical models of microbial growth and metabolism : a whole-organism perspective. Science Progress, 100 (4). pp. 343-362. ISSN 0036-8504.

Nev, Olga and Berg, Hugo van den (2018) Microbial metabolism and growth under conditions of starvation modeled as the sliding mode of a differential inclusion. Dynamical Systems, 33 (1). pp. 93-112. doi:10.1080/14689367.2017.1298726 ISSN 1468-9367.

Nev, Olga and Berg, Hugo van den (2017) Optimal management of nutrient reserves in microorganisms under time-varying environmental conditions. Journal of Theoretical Biology, 429 . pp. 124-141. ISSN 0022-5193.

Nev, Olga and Berg, Hugo van den (2017) Variable-Internal-Stores models of microbial growth and metabolism with dynamic allocation of cellular resources. Journal of Mathematical Biology, 74 (1-2). pp. 409-445. doi:10.1007/s00285-016-1030-4 ISSN 0303-6812.

Nezis, I. P. (2012) The selectivity and specificity of autophagy in drosophila. Cells, Volume 1 (Number 3). pp. 248-262. doi:10.3390/cells1030248 ISSN 2073-4409.

Nguyen, Huy D., Tomitaka, Yasuhiro, Ho, Simon Y. W., Duchêne, Sebastián, Vetten, Heinrich-Josef, Lesemann, D.-E., Walsh, John A., Gibbs, Adrian J. and Ohshima, Kazusato (2013) Turnip mosaic potyvirus probably first spread to Eurasian brassica crops from wild orchids about 1000 years ago. PLoS One, Volume 8 (Number 2). Article no.e55336. doi:10.1371/journal.pone.0055336 ISSN 1932-6203.

Ni, Jing, Chen, Jiaqi, Liu, Shuojie, Hao, Ganglai and Geng, Xueyu (2022) Experimental study of the usage of combined biopolymer and plants in reinforcing the clayey soil exposed to acidic and alkaline contaminations. Applied Sciences, 12 (12). 5808. doi:10.3390/app12125808 ISSN 2076-3417.

Ni, Jing, Li, Shanshan, Mao, Lei and Geng, Xueyu (2020) Performance of soils enhanced with eco-friendly biopolymers in unconfined compression strength tests and fatigue loading tests. Construction and Building Materials, 263 . 120039. doi:10.1016/j.conbuildmat.2020.120039 ISSN 0950-0618.

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, 11 . p. 10. doi:DOI: 10.1186/1471-2164-11-10 ISSN 1471-2164.

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (Article 10). doi:10.1186/1471-2164-11-10 ISSN 1471-2164.

Nijjar, Sarbjit, Maddison, Daniel, Meigh, Louise, Wolf, Elizabeth, Rodgers, Thomas, Cann, Martin J. and Dale, Nicholas (2021) Opposing modulation of Cx26 gap junctions and hemichannels by CO 2. The Journal of Physiology, 599 (1). pp. 103-118. doi:10.1113/JP280747 ISSN 0022-3751.

Nijjar, Sarbjit and Woodland, Hugh R. (2013) Localisation of RNAs into the germ plasm of vitellogenic xenopus oocytes. PLoS One, Volume 8 (Number 4). Article number e61847. doi:10.1371/journal.pone.0061847 ISSN 1932-6203.

Nitzsche, Franziska, Müller, Claudia, Lukomska, Barbara, Jolkkonen, Jukka, Deten, Alexander and Boltze, Johannes (2017) Concise review : MSC adhesion cascade-insights into homing and transendothelial migration. Stem Cells, 35 (6). pp. 1446-1460. doi:10.1002/stem.2614 ISSN 1066-5099.

Nixon, Faye M., Gutierrez-Caballero, Cristina, Hood, Fiona E., Booth, Daniel G., Prior, Ian A. and Royle, Stephen J. (2015) The mesh is a network of microtubule connectors that stabilizes individual kinetochore fibers of the mitotic spindle. eLife, 4 . pp. 1-21. 07635. doi:10.7554/eLife.07635 ISSN 2050-084X.

Noda-Garcia, Lianet, Camacho-Zarco, Aldo R., Medina-Ruíz, Sophía, Gaytán, Paul, Carrillo-Tripp, Mauricio, Fülöp, Vilmos and Barona-Gómez, Francisco (2013) Evolution of substrate specificity in a recipient's enzyme following horizontal gene transfer. Molecular Biology and Evolution, Volume 30 (Number 9). pp. 2024-2034. doi:10.1093/molbev/mst115 ISSN 0737-4038.

Nofal, Ahmed Maged, Cacciotti, Gabriella and Lee, Nick (2020) Who complies with COVID-19 transmission mitigation behavioral guidelines? PLOS ONE, 15 (10). e0240396. doi:10.1371/journal.pone.0240396 ISSN 1932-6203.

Nurika, Irnia, Aristya, Yuvira Ivana, Azizah, Nurul, Sunyoto, Nimas Mayang Sabrina, Suhartini, Sri, Bugg, Timothy D. H. and Barker, Guy C. (2023) Enhancement of the ligninolytic activity of Lysinibacillus sphaericus by the addition of MnSO4 and its impact on subsequent methane production from Oil Palm Empty Fruit Bunches (OPEFB). Bioresource Technology Reports, 22 . 101394. doi:10.1016/j.biteb.2023.101394 ISSN 2589-014X.

Nutsugah, S. K., Twumasi, J. K., Chipili, J., Sere, Y. and Sreenivasaprasad, S. (2008) Diversity of the Rice Blast Pathogen Populations in Ghana and Strategies for Resistance Management. Plant Pathology Journal, Vol.7 (No.1). pp. 109-113. doi:10.3923/ppj.2008.109.113 ISSN 1812-5387.

Nyaguthii, Dickson Machira, Otieno, Grieven P., Kombe, Ivy K., Koech, Dorothy, Mutunga, Martin, Medley, Graham F., Nokes, D. James and Munywoki, Patrick K. (2021) Infection patterns of endemic human coronaviruses in rural households in coastal Kenya [version 1; peer review: 1 approved, 2 approved with reservations]. Wellcome Open Research, 6 . 27. doi:10.12688/wellcomeopenres.16508.1 ISSN 2398-502X.

Ochanda, Horace, Young, A. S. and Medley, Graham (2003) Survival of Theileria parva in its nymphal tick vector Rhipicephalus appendiculatus under laboratory and quasi natural conditions. Parasitology , Vol.12 (No.6). pp. 571-576. doi:10.1017/S0031182003003147 ISSN 0031-1820.

Okal, Michael N, Lindh, Jenny M, Torr, Stephen J., Masinde, Elizabeth, Orindi, Benedict, Lindsay, Steve W and Fillinger, Ulrike (2015) Analysing the oviposition behaviour of malaria mosquitoes : design considerations for improving two-choice egg count experiments. Malaria Journal, Volume 14 (Number 1). Article number 768. doi:10.1186/s12936-015-0768-2 ISSN 1475-2875.

Oketch, John W., Everlyn, Everlyn, Otieno, James R., Mwema, Anthony, Lewa, Clement, Isoe, Everlyne, Nokes, D. James and Agoti, Charles N. (2021) Comparative analysis of spatial-temporal patterns of human metapneumovirus and respiratory syncytial virus in Africa using genetic data, 2011-2014. Virology Journal, 18 (1). 104. doi:10.1186/s12985-021-01570-8 ISSN 1743-422X.

Oketch, John W., Kamau, Everlyn, Otieno, Grieven P., Otieno, James R., Agoti, Charles N. and Nokes, D. James (2019) Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007–2016. BMC Infectious Diseases, 19 (1). 757. doi:10.1186/s12879-019-4381-9 ISSN 1471-2334.

Olakunde, Babayemi O., Adeyinka, Daniel A., Olakunde, Olubunmi A., Uthman, Olalekan A., Bada, Florence O., Nartey, Yvonne A., Obiri-Yeboah, Dorcas, Paintsil, Elijah and Ezeanolue, Echezona E. (2021) A systematic review and meta-analysis of the prevalence of hepatitis B virus infection among pregnant women in Nigeria. PLoS One, 16 (10). e0259218. doi:10.1371/journal.pone.0259218 ISSN 1932-6203.

Olin-Sandoval, Viridiana, Yu, Jason Shu Lim, Miller-Fleming, Leonor, Alam, Mohammad T., Kamrad, Stephan, Correia-Melo, Clara, Haas, Robert, Segal, Joanna, Peña Navarro, David Alejandro, Herrera-Dominguez, Lucia, Méndez-Lucio, Oscar, Vowinckel, Jakob, Mülleder, Michael and Ralser, Markus (2019) Lysine harvesting is an antioxidant strategy and triggers underground polyamine metabolism. Nature, 572 (7768). pp. 249-253. doi:10.1038/s41586-019-1442-6 ISSN 0028-0836.

Oluwole, Abraham O., Corey, Robin A., Brown, Chelsea M., Hernández-Rocamora, Victor M., Stansfeld, Phillip J., Vollmer, Waldemar, Bolla, Jani R. and Robinson, Carol V. (2022) Peptidoglycan biosynthesis is driven by lipid transfer along enzyme-substrate affinity gradients. Nature Communications, 13 (1). 2278. doi:10.1038/s41467-022-29836-x ISSN 2041-1723.

Omran, Farah and Christian, Mark (2020) Inflammatory signaling and brown fat activity. Frontiers in Endocrinology, 11 . doi:10.3389/fendo.2020.00156 ISSN 1664-2392.

Ornelas, Isabel, Unwin, Patrick R. and Bentley, Cameron Luke (2019) High-throughput correlative electrochemistry−microscopy at a transmission electron microscopy (TEM) grid electrode. Analytical Chemistry, 91 (23). pp. 14854-14859. doi:10.1021/acs.analchem.9b04028 ISSN 0003-2700.

Osnes, Magnus N., Didelot, Xavier, Korne-Elenbaas, Jolinda de, Alfsnes, Kristian, Brynildsrud, Ola B., Syversen, Gaute, Nilsen, Øivind Jul, De Blasio, Birgitte Freiesleben, Caugant, Dominique A. and Eldholm, Vegard (2020) Sudden emergence of a Neisseria gonorrhoeae clade with reduced susceptibility to extended-spectrum cephalosporins, Norway. Microbial Genomics, 6 (12). doi:10.1099/mgen.0.000480 ISSN 2057-5858.

(2020) Impact of the introduction of rotavirus vaccine on hospital admissions for diarrhoea among children in Kenya : a controlled interrupted time series analysis. Clinical Infectious Diseases, 70 (11). pp. 2306-2313. doi:10.1093/cid/ciz912 ISSN 1058-4838.

Otten, Lucienne, Fullam, Elizabeth and Gibson, Matthew I. (2016) Discrimination between bacterial species by ratiometric analysis of their carbohydrate binding profile. Molecular BioSystems, 12 (2). pp. 341-344. doi:10.1039/c5mb00720h ISSN 1742-206X.

Ouyang, Ruochen, Costa, Ana Rita, Cassidy, C. Keith, Otwinowska, Aleksandra, Williams, Vera C. J., Latka, Agnieszka, Stansfeld, Phillip J., Drulis-Kawa, Zuzanna, Briers, Yves, Pelt, Daniël M., Brouns, Stan J. J. and Briegel, Ariane (2022) High-resolution reconstruction of a Jumbo-bacteriophage infecting capsulated bacteria using hyperbranched tail fibers. Nature Communications, 13 (1). 7241. doi:10.1038/s41467-022-34972-5 ISSN 2041-1723.

Ozer, Egon A., Nnah, Ekpeno, Didelot, Xavier, Whitaker, Rachel J. and Hauser, Alan R. (2019) The population structure of Pseudomonas aeruginosa is characterized by genetic isolation of exoU+ and exoS+ lineages. Genome Biology and Evolution, 11 (1). pp. 1780-1796. doi:10.1093/gbe/evz119 ISSN 1759-6653.

Pacheco, Catarina C., Büttel, Zsófia, Pinto, Filipe, Rodrigo, Guillermo, Carrera, Javier, Jaramillo, Alfonso and Tamagnini, Paula (2018) Modulation of intracellular O2 concentration in Escherichia coli strains using oxygen consuming devices. ACS Synthetic Biology, 7 (7). pp. 1742-1752. doi:10.1021/acssynbio.7b00428 ISSN 2161-5063.

Pacheco, Luis G. C., Slade, Susan E., Seyffert, Núbia, Santos, Anderson R., Castro, Thiago L. P., Silva, Wanderson M., Santos, Agenor V., Santos, Simone G., Farias, Luiz M., Carvalho, Maria A. R., Pimenta, Adriano M. C., Meyer, Roberto, Silva, Artur, Scrivens, James H., Oliveira, Sérgio C., Miyoshi, Anderson, Dowson, Christopher G. and Azevedo, Vasco (2011) A combined approach for comparative exoproteome analysis of Corynebacterium pseudotuberculosis. BMC Microbiology, Vol.11 . article no. 12. doi:10.1186/1471-2180-11-12 ISSN 1471-2180.

Pacheco-Gómez, Raúl, Roper, David I., Dafforn, Tim and Rodger, Alison (2011) The pH dependence of polymerization and bundling by the essential bacterial cytoskeltal protein FtsZ. PLoS One, Vol.6 (No.6). e19369. doi:10.1371/journal.pone.0019369 ISSN 1932-6203.

Page, Andrew J., Alikhan, Nabil-Fareed, Carleton, Heather A., Seemann, Torsten, Keane, Jacqueline A. and Katz, Lee S. (2017) Comparison of classical multi-locus sequence typing software for next-generation sequencing data. Microbial Genomics, 3 (8). e000124. doi:10.1099/mgen.0.000124 ISSN 2057-5858.

Pandey, Anish, Cleary, David W., Laver, Jay R., Gorringe, Andrew, Deasy, Alice M., Dale, Adam P., Morris, Paul D., Didelot, Xavier, Maiden, Martin C. J. and Read, Robert C. (2018) Microevolution of Neisseria lactamica during nasopharyngeal colonisation induced by controlled human infection. Nature Communications, 9 (1). 4753. doi:10.1038/s41467-018-07235-5 ISSN 2041-1723.

Panzi, Eric Kalunda, Okenge, Léon Ngongo, Kabali, Eugénie Hamuli, Tshimungu, Félicien, Dilu, Angèle Keti, Mulangu, Felix and Kandala, Ngianga-Bakwin (2022) Geo-climatic factors of Malaria morbidity in the Democratic Republic of Congo from 2001 to 2019. International Journal of Environmental Research and Public Health, 19 (7). e3811. doi:10.3390/ijerph19073811 ISSN 1660-4601.

Parag, K. V., Thompson, Robin N. and Donnelly, C. A. (2022) Are epidemic growth rates more informative than reproduction numbers? Journal of the Royal Statistical Society: Series A . doi:10.1111/rssa.12867 ISSN 0964-1998. (In Press)

Parker, Hadyn, Tomás, Ruben M. F., Furze, Christopher M., Guy, Collette S. and Fullam, Elizabeth (2020) Asymmetric trehalose analogues to probe disaccharide processing pathways in mycobacteria. Organic & Biomolecular Chemistry (18). pp. 3607-3612. doi:10.1039/D0OB00253D ISSN 1477-0520.

Parkinson, Sam J., Tungsirisurp, Sireethorn, Joshi, Chitra, Richmond, Bethany L., Gifford, Miriam L., Sikder, Amrita, Lynch, Iseult, O’Reilly, Rachel K. and Napier, Richard (2022) Polymer nanoparticles pass the plant interface. Nature Communications, 13 (1). 7385. doi:10.1038/s41467-022-35066-y ISSN 2041-1723.

Parsons, Joanne and Atherton, Helen (2020) How effective are digital interventions in increasing flu vaccination amongst pregnant women? A systematic review protocol. Systematic Reviews, 9 (1). p. 117. doi:10.1186/s13643-020-01372-z ISSN 2046-4053.

(2013) Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus. BMC Genomics, Volume 14 (Number 1). Article number 663. doi:10.1186/1471-2164-14-663 ISSN 1471-2164.

Paulin, Sarah, Jamshad, Mohammed, Dafforn, Tim, Garcia-Lara, Jorge, Foster, Simon J., Galley, Nicola F., Roper, David I., Rosado, Helena and Taylor, Peter W. (2014) Surfactant-free purification of membrane protein complexes from bacteria : application to the staphylococcal penicillin-binding protein complex PBP2/PBP2a. Nanotechnology, Volume 25 (Number 28). Article number 285101. doi:10.1088/0957-4484/25/28/285101 ISSN 0957-4484.

Paulitsch-Fuchs, Astrid H., Bödendorfer, Benjamin, Wolrab, Lukas, Eck, Nicole, Dyer, Nigel P. and Lohberger, Birgit (2022) Effect of Cobalt–Chromium–Molybdenum implant surface modifications on biofilm development of S. aureus and S. epidermidis. Frontiers in Cellular and Infection Microbiology, 12 . 837124. doi:10.3389/fcimb.2022.837124 ISSN 2235-2988.

Pearce, David A., Newsham, Kevin K., Thorne, Michael A. S., Calvo-Bado, Leo A., Krsek, Martin, Laskaris, Paris, Hodson, Andrew J. and Wellington, E. M. H. (2012) Metagenomic analysis of a southern maritime Antarctic soil. Frontiers in Microbiology, Volume 3 . Article number 403. doi:10.3389/fmicb.2012.00403 ISSN 1664-302X.

Pecchia, Leandro, Piaggio, Davide, Maccaro, Alessia, Formisano, Claudio and Iadanza, Ernesto (2020) The inadequacy of regulatory frameworks in time of crisis and in low-resource settings : personal protective equipment and COVID-19. Health and Technology, 10 . pp. 1375-1383. doi:10.1007/s12553-020-00429-2 ISSN 2190-7188.

Penman, Bridget S. and Gupta, Sunetra (2018) Detecting signatures of past pathogen selection on human HLA loci : are there needles in the haystack? Parasitology , 145 (6). pp. 731-739. doi:10.1017/S0031182017001159 ISSN 0031-1820.

Penman, Bridget S., Moffett, Ashley, Chazara, Olympe, Gupta, Sunetra and Parham, Peter (2016) Reproduction, infection and killer-cell immunoglobulin-like receptor haplotype evolution. Immunogenetics, 68 (10). pp. 755-764. doi:10.1007/s00251-016-0935-9 ISSN 0093-7711.

Perez-Sepulveda, Blanca, Pitt, Frances Diana, N’Guyen, A. N., Ratin, M., Garczarek, L., Millard, Andrew D. and Scanlan, David J. (2018) Relative stability of ploidy in a marine Synechococcus across various growth conditions. Environmental Microbiology, 10 (4). pp. 428-432. doi:10.1111/1758-2229.12614 ISSN 1462-2912.

Perez-Sepulveda, Blanca, Redgwell, Tamsin, Rihtman, Branko, Pitt, Frances Diana, Scanlan, David J. , Millard, Andrew D. and Hantke, Klaus (2016) Marine phage genomics : the tip of the iceberg. FEMS Microbiology Letters, 363 (15). doi:10.1093/femsle/fnw158 ISSN 0378-1097.

Perkins, Arden, Tudorica, Dan A., Teixeira, Raphael D., Schirmer, Tilman, Zumwalt, Lindsay, Ogba, O. Maduka, Cassidy, C. Keith, Stansfeld, Phillip J., Guillemin, Karen and Cooper, Vaughn S. (2021) A bacterial inflammation sensor regulates c-di-GMP signaling, adhesion, and biofilm formation. mBio, 12 (3). e00173-21. doi:10.1128/mBio.00173-21 ISSN 2150-7511.

Petre, Benjamin, Contreras, Mauricio P., Bozkurt, Tolga O., Schattat, Martin H., Sklenar, Jan, Schornack, Sebastian, Abd-El-Haliem, Ahmed, Castells-Graells, Roger, Lozano-Durán, Rosa, Dagdas, Yasin F., Menke, Frank L. H., Jones, Alexandra M. E., Vossen, Jack H., Robatzek, Silke, Kamoun, Sophien and Win, Joe (2021) Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process. The Plant Cell, 33 (5). pp. 1447-1471. doi:10.1093/PLCELL/KOAB069 ISSN 1040-4651.

Petrova, Yoana D., Zhao, Jinlian, Webster, Gordon, Mullins, Alex J., Williams, Katherine, Alswat, Amal S., Challis, Gregory L., Bailey, Andy M. and Mahenthiralingam, Eshwar (2022) Cloning and expression of Burkholderia polyyne biosynthetic gene clusters in Paraburkholderia hosts provides a strategy for biopesticide development. Microbial Biotechnology, 15 (10). pp. 2547-2561. doi:10.1111/1751-7915.14106 ISSN 1751-7907.

Phillips, Daniel J., Wilde, Marleen, Greco, Francesca and Gibson, Matthew I. (2015) Enzymatically-triggered, isothermally responsive polymers : re-programming poly(oligoethylene glycols) to respond to phosphatase. Biomacromolecules, 16 (10). pp. 3256-3264. doi:10.1021/acs.biomac.5b00929 ISSN 1525-7797.

Phillpott, Mason, Daga, Sunil, Higgins, Rob, Lowe, David Philip, Krishnan, Nithya S., Zehnder, Daniel, Briggs, David and Khovanova, N. A. (2022) Dynamic behaviour of donor specific antibodies in the early period following HLA incompatible kidney transplantation. Transplant International, 35 . 10128. doi:10.3389/ti.2022.10128 ISSN 1432-2277.

Piersma, Sjouke, Denham, Emma, Drulhe, Samuel, Tonk, Rudi H. J., Schwikowski, Benno and Dijl, Jan Maarten van (2013) TLM-Quant : an open-source pipeline for visualization and quantification of gene expression heterogeneity in growing microbial cells. PLoS One, Volume 8 (Number 7). Article number e68696. doi:10.1371/journal.pone.0068696 ISSN 1932-6203.

Piper, Jason, Assi, Salam A., Cauchy, Pierre, Ladroue, Christophe, Cockerill, Peter N., Bonifer, Constanze and Ott, Sascha (2015) Wellington-bootstrap : differential DNase-seq footprinting identifies cell-type determining transcription factors. BMC Genomics, 16 (1). pp. 1-8. doi:10.1186/s12864-015-2081-4 ISSN 1471-2164.

Pitt, Frances Diana, Millard, Andrew D., Ostrowski, Martin, Dervish, Suat, Mazard, Sophie, Paulsen, Ian T., Zubkov, Mikhail V. and Scanlan, David J. (2016) A sample-to-sequence protocol for genus targeted transcriptomic profiling : application to marine Synechococcus. Frontiers in Microbiology, 7 . 1592. doi:10.3389/fmicb.2016.01592 ISSN 1664-302X.

Pittera, Justine, Jouhet, Juliette, Breton, Solène, Garczarek, Laurence, Partensky, Frédéric, Maréchal, Éric, Nguyen, Ngoc A., Doré, Hugo, Ratin, Morgane, Pitt, Frances Diana, Scanlan, David J. and Six, Christophe (2017) Thermoacclimation and genome adaptation of the membrane lipidome in marine Synechococcus. Environmental Microbiology, 20 (2). pp. 612-631. doi:10.1111/1462-2920.13985 ISSN 1462-2912.

Ploeg, R. van der, Monteferrante, Carmine G., Piersma, Sjouke, Barnett, James P., Kouwen, Thijs R. H. M., Robinson, Colin and van Dijl, J. M. (2012) High-salinity growth conditions promote tat-independent secretion of tat substrates in Bacillus subtilis. Applied and Environmental Microbiology, Vol.78 (No.21). pp. 7733-7744. doi:10.1128/AEM.02093-12 ISSN 0099-2240.

Ploss, Tina N., Reilman, Ewoud, Monteferrante, Carmine G., Denham, Emma, Piersma, Sjouke, Lingner, Anja, Vehmaanperä, Jari, Lorenz, Patrick and van Dijl, Jan Maarten (2016) Homogeneity and heterogeneity in amylase production by Bacillus subtilis under different growth conditions. Microbial Cell Factories, 15 (1). doi:10.1186/s12934-016-0455-1 ISSN 1475-2859.

Plummer, Martyn, de Martel, Catherine, Vignat, Jerome, Ferlay, J., Bray, Freddie and Franceschi, Silvia (2016) Global burden of cancers attributable to infections in 2012 : a synthetic analysis. The Lancet Global Health, 4 (9). e609-e616. doi:10.1016/S2214-109X(16)30143-7 ISSN 2214109X.

Podtelezhnikov, Alexei A. and Wild, David L. (2008) CRANKITE: a fast polypeptide backbone conformation sampler. Source Code for Biology and Medicine, Vol. 3 (No. 12). doi:10.1186/1751-0473-3-12 ISSN 1751-0473.

(2018) Mutations in SELENBP1, encoding a novel human methanethiol oxidase, cause extraoral halitosis. Nature Genetics, 50 (1). pp. 120-129. doi:10.1038/s41588-017-0006-7 ISSN 1061-4036.

Pontiroli, Alessandra, Khera, Tanya T., Oakley, Brian B., Mason, Sam, Dowd, Scot E., Travis, Emma Rachel, Erenso, Girum, Aseffa, Abraham, Courtenay, Orin and Wellington, E. M. H. (2013) Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity. PLoS One, Volume 8 (Number 7). Article number e68648. doi:10.1371/journal.pone.0068648 ISSN 1932-6203.

Pontiroli, Alessandra, Travis, Emma Rachel, Sweeney, F. P., Porter, David, Gaze, William H., Mason, Sam, Hibberd, V., Holden, Jennifer, Courtenay, Orin and Wellington, E. M. H. (2011) Pathogen quantitation in complex matrices : a multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition. PLoS One, Vol.6 (No.3). Article number e17916. doi:10.1371/journal.pone.0017916 ISSN 1932-6203.

Popat, Roman, Harrison, Freya, da Silva, Ana C., Easton, Scott A. S., McNally, Luke, Williams, Paul and Diggle, Stephen P. (2017) Environmental modification via a quorum sensing molecule influences the social landscape of siderophore production. Proceedings of the Royal Society B: Biological Sciences, 284 (1852). 20170200. doi:10.1098/rspb.2017.0200 ISSN 0962-8452.

Pratt, Hillary G., Steinberger, Kayla J., Mihalik, Nicole E., Ott, Sascha, Whalley, Thomas, Szomolay, Barbara, Boone, Brian A. and Eubank, Timothy D. (2021) Macrophage and neutrophil interactions in the pancreatic tumor microenvironment drive the pathogenesis of pancreatic cancer. Cancers, 14 (1). e194. doi:10.3390/cancers14010194 ISSN 2072-6694.

Prindle, Arthur, Liu, Jintao, Asally, Munehiro, Ly, San, Garcia-Ojalvo, Jordi and Süel, Gürol M. (2015) Ion channels enable electrical communication in bacterial communities. Nature, 527 . pp. 59-63. doi:10.1038/nature15709 ISSN 0028-0836.

Prosser, Naomi S., Hill, Edward M., Armstrong, Derek, Gow, Lorna, Tildesley, Michael J., Keeling, Matt J., Kaler, Jasmeet, Ferguson, Eamonn and Green, Martin J. (2022) Descriptive analysis of national bovine viral diarrhoea test data in England. Veterinary Record, 191 (5). e1854. doi:10.1002/vetr.1854 ISSN 2042-7670.

Punekar, Avinash S., Samsudin, Firdaus, Lloyd, Adrian J., Dowson, Christopher G., Scott, David J., Khalid, Syma and Roper, David I. (2018) The role of the jaw subdomain of peptidoglycan glycosyltransferases for lipid II polymerization. The Cell Surface, 2 . pp. 54-66. doi:10.1016/j.tcsw.2018.06.002 ISSN 2468-2330.

Puxty, Richard J. and Millard, Andrew D. (2023) Functional ecology of bacteriophages in the environment. Current Opinion in Microbiology, 71 . 102245. doi:10.1016/j.mib.2022.102245 ISSN 1369-5274.

Puxty, Richard J., Millard, Andrew D., Evans, David J. and Scanlan, David J. (2016) Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology, 26 (12). pp. 1585-1589. doi:10.1016/j.cub.2016.04.036 ISSN 0960-9822.

Puxty, Richard John, Evans, David J., Millard, Andrew D. and Scanlan, David J. (2018) Energy limitation of cyanophage development : implications for marine carbon cycling. ISME Journal, 12 . 1273-1286 . doi:10.1038/s41396-017-0043-3 ISSN 1751-7362.

Puxty, Richard John, Perez-Sepulveda, Blanca, Rihtman, Branko, Evans, David J., Millard, Andrew D. and Scanlan, David J. (2015) Spontaneous deletion of an “ORFanage” region facilitates host adaptation in a “photosynthetic” cyanophage. PLoS One, Volume 10 (Number 7). pp. 1-13. Article number e0132642. doi:10.1371/journal.pone.0132642 ISSN 1932-6203.

Pye, Valerie E., Rosa, Annachiara, Bertelli, Cinzia, Struwe, Weston B., Maslen, Sarah L., Corey, Robin A., Liko, Idlir, Hassall, Mark, Mattiuzzo, Giada, Ballandras-Colas, Allison, Nans, Andrea, Takeuchi, Yasuhiro, Stansfeld, Phillip J., Skehel, J. Mark, Robinson, Carol V., Pizzato, Massimo and Cherepanov, Peter (2020) A bipartite structural organization defines the SERINC family of HIV-1 restriction factors. Nature Structural & Molecular Biology, 27 . pp. 78-83. doi:10.1038/s41594-019-0357-0 ISSN 1545-9993.

Pym, Edward C.G., Southall, Tony D., Mee, Christopher J., Brand, Andrea H. and Baines, Richard A. (2006) The homeobox transcription factor Even-skipped regulates acquisition of electrical properties in Drosophila neurons. Neural Development, Vol.1 (No.3). doi:10.1186/1749-8104-1-3 ISSN 1749-8104.

Qin, Cheng, Li, Bin, Fan, Yaya, Zhang, Xian, Yu, Zhiming, Ryabov, Eugene, Zhao, Mei, Wang, Hui, Shi, Nongnong, Zhang, Pengcheng, Jackson, Stephen D. , Tör, Mahmut, Cheng, Qi, Liu, Yule, Gallusci, Philippe and Hong, Yiguo (2017) Roles of dicer-like proteins 2 and 4 in intra- and intercellular antiviral silencing. Plant Physiology, 174 (2). pp. 1067-1081. doi:10.1104/pp.17.00475 ISSN 0032-0889.

Qin, Qi-Long, Wang, Zhi-Bin, Su, Hai-Nan, Chen, Xiu-Lan, Miao, Jie, Wang, Xiu-Juan, Li, Chun-Yang, Zhang, Xi-Ying, Li, Ping-Yi, Wang, Min, Fang, Jiasong, Lidbury, Ian, Zhang, Weipeng, Zhang, Xiao-Hua, Yang, Gui-Peng, Chen, Yin and Zhang, Yu-Zhong (2021) Oxidation of trimethylamine to trimethylamine N-oxide facilitates high hydrostatic pressure tolerance in a generalist bacterial lineage. Science Advances, 7 (13). eabf9941. doi:10.1126/sciadv.abf9941 ISSN 2375-2548.

Quareshy, Mussa, Shanmugam, Muralidharan, Townsend, Eleanor, Jameson, Eleanor, Bugg, Timothy D. H., Cameron, Alexander and Chen, Yin (2021) Structural basis of carnitine monooxygenase CntA substrate specificity, inhibition and inter-subunit electron transfer. Journal of Biological Chemistry, 296 . 100038. doi:10.1074/jbc.RA120.016019 ISSN 0021-9258.

Quick, Joshua, Cumley, Nicola, Wearn, Christopher M., Niebel, Marc, Constantinidou, Chrystala, Thomas, Christopher M., Pallen, Mark J., Moiemen, Naiem S., Bamford, Amy, Oppenheim, Beryl and Loman, Nicholas J. (2014) Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital : an observational study using whole-genome sequencing. BMJ Open, Volume 4 (Number 11). Article number e006278. doi:10.1136/bmjopen-2014-006278 ISSN 2044-6055.

Quick, Joshua , Constantinidou, Chrystala, Pallen, Mark J., Oppenheim, Beryl and Loman, Nicholas J. (2014) Draft genome sequence of Elizabethkingia meningoseptica isolated from a traumatic wound. Genome Announcements, Volume 2 (Number 3). Article number e00355-14. doi:10.1128/genomeA.00355-14 ISSN 2169-8287.

Quince, Christopher , Nurk, Sergey, Raguideau, Sébastien, James, Robert, Soyer, Orkun S., Summers, J. Kimberly, Limasset, Antoine, Eren, A. Murat, Chikhi, Rayan and Darling, Aaron E. (2021) STRONG : metagenomics strain resolution on assembly graphs. Genome Biology, 22 (1). 214. doi:10.1186/s13059-021-02419-7 ISSN 1474-7596.

Quinn, Angus, Bottery, Michael J., Thompson, Harry and Friman, Ville-Petri (2022) Resistance evolution can disrupt antibiotic exposure protection through competitive exclusion of the protective species. The ISME Journal, 16 . 2433-2447 . doi:10.1038/s41396-022-01285-w ISSN 1751-7362.

Rahmanpour, Rahman and Bugg, Tim (2013) Assembly in vitro of rhodococcus jostii RHA1 encapsulin and peroxidase DypB to form a nano-compartment. FEBS Journal, Volume 280 (Issue 9). pp. 2097-2104. doi:10.1111/febs.12234 ISSN 1742-464x.

Rangama, Severine, Lidbury, Ian, Holden, Jennifer, Borsetto, Chiara, Murphy, Andrew, Hawkey, Peter and Wellington, E. M. H. (2021) Mechanisms involved in the active secretion of CTX-M-15 β-lactamase by pathogenic Escherichia coli ST131. Antimicrobial Agents and Chemotherapy, 65 (10). e0066321. doi:10.1128/AAC.00663-21 ISSN 0066-4804.

Rangel-Pineros, Guillermo, Millard, Andrew D., Michniewski, Slawomir, Scanlan, David J. , Sirén, Kimmo, Reyes, Alejandro, Petersen, Bent, Clokie, Martha R. J. and Sicheritz-Pontén, Thomas (2021) From trees to clouds : PhageClouds for fast comparison of ∼640,000 phage genomic sequences and host-centric visualization using genomic network graphs. PHAGE : Therapy, Applications, and Research, 2 (4). pp. 194-203. doi:10.1089/phage.2021.0008 ISSN 2641-6530.

Rao, Shanlin, Bates, George T., Matthews, Callum R., Newport, Thomas D., Vickery, Owen N. and Stansfeld, Phillip J. (2020) Characterising membrane association and periplasmic transfer of bacterial lipoproteins through molecular dynamics simulations. Structure, 28 (4). pp. 475-487. doi:10.1016/j.str.2020.01.012 ISSN 0969-2126.

Ratheesh, Aparna, Belyaeva, Vera and Siekhaus, Daria E (2015) Drosophila immune cell migration and adhesion during embryonic development and larval immune responses. Current Opinion in Cell Biology, 36 . pp. 71-79. doi:10.1016/j.ceb.2015.07.003 ISSN 09550674.

Rakai Health Sciences Program, Pangea HIV Consortium (Including:

). (2020) Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities : a population-based study in Rakai, Uganda. The Lancet HIV, 7 (3). e173-e183. doi:10.1016/S2352-3018(19)30378-9 ISSN 2352-3018.

Ray, Swagat and Anderson, Emma C. (2016) Stimulation of translation by human Unr requires cold shock domains 2 and 4, and correlates with poly(A) binding protein interaction. Scientific Reports, 6 . 22461. doi:10.1038/srep22461 ISSN 2045-2322.

Rea, Dean, Van Elzen, Roos, De Winter, Hans, Van Goethem, Sebastiaan, Landuyt, Bart, Luyten, Walter, Schoofs, Liliane, Van Der Veken, Pieter, Augustyns, Koen, De Meester, Ingrid, Fülöp, Vilmos and Lambeir, Anne-Marie (2017) Crystal structure of Porphyromonas gingivalis dipeptidyl peptidase 4 and structure-activity relationships based on inhibitor profiling. European Journal of Medicinal Chemistry, 139 . pp. 482-491. doi:10.1016/j.ejmech.2017.08.024 ISSN 0223-5234.

Rego, Ryan, Watson, Samuel I., Alam, Mohammad Atique Ul, Abdullah, Syed Asif, Yunus, Mohammad, Alam, Imam Taskin, Chowdhury, A.S.M.Homuan Kabir, Haider, S.M.Arefeen, Faruque, ASG, Khan, Azharul Islam, Hofer, Timothy, Gill, Paramjit, Islam, Mohammad Sirajul and Lilford, Richard (2021) A comparison of traditional diarrhoea measurement methods with microbiological and biochemical indicators : a cross-sectional observational study in the Cox's Bazar displaced persons camp. eClinicalMedicine, 42 . 101205. doi:10.1016/j.eclinm.2021.101205 ISSN 2589-5370.

Reilman, E., Mars, R. A. T., van Dijl, J. M. and Denham, Emma (2014) The multidrug ABC transporter BmrC/BmrD of Bacillus subtilis is regulated via a ribosome-mediated transcriptional attenuation mechanism. Nucleic Acids Research, 42 (18). pp. 11393-11407. doi:10.1093/nar/gku832 ISSN 0305-1048.

Remenyi, Judit, van den Bosch, Mirjam W. M., Palygin, Oleg, Mistry, Rajen B., McKenzie, Colin, Macdonald, Andrew, Hutvagner, Gyorgy, Arthur, J. Simon C., Frenguelli, Bruno G. and Pankratov, Yuriy (2013) miR-132/212 knockout mice reveal roles for these miRNAs in regulating cortical synaptic transmission and plasticity. PLoS One, Volume 8 (Number 4). Article number e62509. doi:10.1371/journal.pone.0062509 ISSN 1932-6203.

Rich-Griffin, Charlotte, Stechemesser, Annika, Finch, Jessica A., Lucas, Emma S., Ott, Sascha and Schäfer, Patrick (2019) Single-cell transcriptomics : a high-resolution avenue for plant functional genomics. Trends in Plant Science . doi:10.1016/j.tplants.2019.10.008 ISSN 1360-1385.

Richa, Kumari, Balestra, Cecilia, Piredda, Roberta, Benes, Vladimir, Borra, Marco, Passarelli, Augusto, Margiotta, Francesca, Saggiomo, Maria, Biffali, Elio, Sanges, Remo, Scanlan, David J. and Casotti, Raffaella (2017) Distribution, community composition and potential metabolic activity of bacterioplankton in an urbanized Mediterranean Sea coastal zone. Applied and Environmental Microbiology, 83 (17). e00494-17. doi:10.1128/AEM.00494-17 ISSN 0099-2240.

Richards, Adair D. and Rodger, Alison (2007) Synthetic metallomolecules as agents for the control of DNA structure. Chemical Society Reviews, 36 (No.3). pp. 471-483. doi:10.1039/b609495c ISSN 0306-0012.

Richards, Sarah-Jane, Baker, Alexander, Walker, Marc and Gibson, Matthew I. (2020) Polymer-stabilized sialylated nanoparticles : synthesis, optimization, and differential binding to influenza hemagglutinins. Biomacromolecules, 21 (4). pp. 1604-1612. doi:10.1021/acs.biomac.0c00179 ISSN 1525-7797.

Riddell, Carolyn E., Lobaton Garces, Juan D., Adams, Sally, Barribeau, Seth M., Twell, David and Mallon, Eamonn B. (2014) Differential gene expression and alternative splicing in insect immune specificity. BMC Genomics, Volume 15 (Number 1). Article number 1031. doi:10.1186/1471-2164-15-1031 ISSN 1471-2164.

Rihtman, Branko, Meaden, Sean, Clokie, Martha R. J., Koskella, Britt and Millard, Andrew D. (2016) Assessing Illumina technology for the high-throughput sequencing of bacteriophage genomes. PeerJ, 4 . pp. 1-21. e2055. doi:10.7717/peerj.2055 ISSN 2167-8359.

Rihtman, Branko, Puxty, Richard John, Hapeshi, Alexia, Lee, Yan-Jiun, Zhan, Yuanchao, Michniewski, Slawomir, Waterfield, Nicholas R., Chen, Feng, Weigele, Peter, Millard, Andrew D., Scanlan, David J. and Chen, Yin (2021) A new family of globally distributed lytic roseophages with unusual deoxythymidine to deoxyuridine substitution. Current Biology, 31 (14). 3199-3206.e4. doi:10.1016/j.cub.2021.05.014 ISSN 0960-9822.

Robb, Nicole C. (2022) Virus morphology : insights from super-resolution fluorescence microscopy. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, 1868 (4). 166347. doi:10.1016/j.bbadis.2022.166347 ISSN 0925-4439.

Robb, Nicole C., Taylor, Jonathan M., Kent, Amy, Pambos, Oliver J., Gilboa, Barak, Evangelidou, Maria, Mentis, Alexios-Fotios A. and Kapanidis, Achillefs N. (2019) Rapid functionalisation and detection of viruses via a novel Ca2+-mediated virus-DNA interaction. Scientific Reports, 9 (1). 16219. doi:10.1038/s41598-019-52759-5 ISSN 2045-2322.

Robb, Nicole C., te Velthuis, Aartjan J. W., Fodor, Ervin and Kapanidis, Achillefs N. (2019) Real-time analysis of single influenza virus replication complexes reveals large promoter-dependent differences in initiation dynamics. Nucleic Acids Research, 47 (12). pp. 6466-6477. doi:10.1093/nar/gkz313 ISSN 0305-1048.

Robb, Nicole C., te Velthuis, Aartjan J. W., Wieneke, Ralph, Tampé, Robert, Cordes, Thorben, Fodor, Ervin and Kapanidis, Achillefs N. (2016) Single-molecule FRET reveals the pre-initiation and initiation conformations of influenza virus promoter RNA. Nucleic Acids Research, 44 (21). pp. 10304-10315. doi:10.1093/nar/gkw884 ISSN 0305-1048.

Robinson, Esther R., Juhas, Mario, Hood, Derek W. and Crook, Derrick (2010) Construction of a novel shuttle vector for use in Haemophilus influenzae and H. parainfluenzae. Journal of Microbiological Methods, 83 (3). pp. 330-334. doi:10.1016/j.mimet.2010.09.010 ISSN 0167-7012.

Robotham, Julie, Jenkins, D. R. and Medley, Graham (2006) Screening strategies in surveillance and control of methicillin-resistant Staphylococcus aureus (MRSA). Epidemiology and Infection, Vol.135 (No.2). pp. 328-342. doi:10.1017/S095026880600687X ISSN 0950-2688.

(2015) The global threat of antimicrobial resistance : science for intervention. New Microbes and New Infections, 6 . pp. 22-29. doi:10.1016/j.nmni.2015.02.007 ISSN 2052-2975.

Rock, Kat S., Brand, Samuel, Moir, Jo and Keeling, Matthew James (2014) Dynamics of infectious diseases. Reports on Progress in Physics, Volume 77 (Number 2). Article number 026602. doi:10.1088/0034-4885/77/2/026602 ISSN 0034-4885.

Rodriguez-Manzano, Jesus, Moser, Nicolas, Malpartida-Cardenas, Kenny, Moniri, Ahmad, Fisarova, Lenka, Pennisi, Ivana, Boonyasiri, Adhiratha, Jauneikaite, Elita, Abdolrasouli, Alireza, Otter, Jonathan A., Bolt, Frances, Davies, Frances, Didelot, Xavier, Holmes, Alison and Georgiou, Pantelis (2020) Rapid detection of mobilized colistin resistance using a nucleic acid based lab-on-a-chip diagnostic system. Scientific Reports, 10 (1). 8448 . doi:10.1038/s41598-020-64612-1 ISSN 2045-2322.

Rodwell, Ella V., Chan, Yung-Wai, Sawyer, Clare, Carroll, Anne, McNamara, Eleanor, Allison, Lesley, Browning, Lynda, Holmes, Anne, Godbole, Gauri, McCarthy, Noel D. and Jenkins, Claire (2022) Shiga toxin-producing Escherichia coli clonal complex 32, including serotype O145:H28, in the UK and Ireland. Journal of Medical Microbiology, 71 (8). doi:10.1099/jmm.0.001579 ISSN 0022-2615.

Rodwell, Ella V., Vishram, Bhavita, Smith, Robert, Browning, Lynda, Smith-Palmer, Alison, Allison, Lesley, Holmes, Anne, Godbole, Gauri, McCarthy, Noel D., Dallman, Timothy J. and Jenkins, Claire (2021) Epidemiology and genomic analysis of Shiga toxin-producing Escherichia coli clonal complex 165 in the UK. Journal of Medical Microbiology, 70 (12). 001471. doi:10.1099/jmm.0.001471 ISSN 0022-2615.

Roemer, Rudolf A., Roemer, Navodya S. and Wallis, A. Katrine (2021) Flexibility and mobility of SARS-CoV-2-related protein structures. Scientific Reports, 11 . 4257 . doi:10.1038/s41598-021-82849-2 ISSN 2045-2322.

Rohn, Jennifer L., Mostowy, Serge, King, Jason S., Unnikrishnan, Meera and Gutierrez, Maximiliano G. (2019) The UK cellular microbiology network : exploring the host‐bacterial interface. Cellular Microbiology, 21 (9). e13081. doi:10.1111/cmi.13081 ISSN 1462-5814.

Ronan, Jade L., Kadi, Nadia, McMahon, Stephen A., Naismith, James H., Alkhalaf, Lona M. and Challis, Gregory L. (2018) Desferrioxamine biosynthesis : diverse hydroxamate assembly by substrate-tolerant acyl transferase DesC. Philosophical Transactions of the Royal Society B: Biological Sciences, 373 (1748). doi:10.1098/rstb.2017.0068 ISSN 1471-2970.

Roy, Proyash, Achom, Mingkee, Wilkinson, Helen, Lagunas, Beatriz and Gifford, Miriam L. (2020) Symbiotic outcome modified by the diversification from 7 to over 700 nodule specific cysteine rich peptides. Genes, 11 (4). 348. doi:10.3390/genes11040348 ISSN 2073-4425.

Ruane, Karen M., Lloyd, Adrian J., Fülöp, Vilmos, Dowson, Christopher G., Barreteau, Hélène, Boniface, Audrey, Dementin, Sébastien, Blanot, Didier, Mengin-Lecreulx, Dominique, Gobec, Stanislav, Dessen, Andréa and Roper, David I. (2013) Specificity determinants for lysine incorporation in staphylococcus aureus peptidoglycan as revealed by the structure of a MurE enzyme ternary complex. Journal of Biological Chemistry, Volume 288 (Number 46). Article number 33439. doi:10.1074/jbc.M113.508135 ISSN 0021-9258.

Ruparell, Avika, Dubern, Jean Frederic, Ortori, Cartherine A, Harrison, Freya, Halliday, Nigel M., Emtage, Abigail, Ashawesh, Mahmoud, Laughton, Charles A., Diggle, Stephen P., Williams, P., Barrett, D. A. (David A.) and Hardie, Kim Rachael (2016) The fitness burden imposed by synthesising quorum sensing signals. Scientific Reports, 6 . pp. 1-10. 33101. doi:10.1038/srep33101 ISSN 2045-2322.

Sachak-Patwa, Rahil, Byrne, Helen M. and Thompson, Robin N. (2021) Accounting for cross-immunity can improve forecast accuracy during influenza epidemics. Epidemics, 34 . 100432. doi:10.1016/j.epidem.2020.100432 ISSN 1755-4365.

Sadeqi, Sara, Michniewski, Slawomir, Nikkhahi, Farhad, Jameson, Eleanor and Amin Marashi, Seyed Mahmoud (2023) Isolation of new Klebsiella pneumoniae phage PSKP16. Iranian Journal of Microbiology, 15 (1). pp. 62-68. doi:10.18502/ijm.v15i1.11919 ISSN 2008-3289.

Sagar, Nidhi M., Duboc, Henri, Kay, Gemma L., Alam, Mohammad T., Wicaksono, Alfian, Covington, James A., Quince, Christopher , Kokkorou, Margarita, Svolos, Vaios, Palmieri, Lola J., Gerasimidis, Konstantinos, Walters, Julian R. F. and Arasaradnam, Ramesh P. (2020) The pathophysiology of bile acid diarrhoea : differences in the colonic microbiome, metabolome and bile acids. Scientific Reports, 10 (1). 20436. doi:10.1038/s41598-020-77374-7 ISSN 2045-2322.

Sagona, Antonia P., Grigonyte, Aurelija M., MacDonald, Paul and Jaramillo, Alfonso (2016) Genetically modified bacteriophages. Integrative Biology, 8 . pp. 465-474. doi:10.1039/c5ib00267b ISSN 1757-9694.

Salathia, Neeraj , Davis, Seth J., Lynn, James R. , Michaels, Scott D., Amasino, Richard M. and Millar, A. J. (Andrew J.) (2006) FLOWERING LOCUS C -dependent and -independent regulation of the circadian clock by the autonomous and vernalization pathways. BMC Plant Biology, Vol.6 (No.10). doi:10.1186/1471-2229-6-10 ISSN 1471-2229.

Salathé, Marcel and Soyer, Orkun S. (2008) Parasites lead to evolution of robustness against gene loss in host signaling networks. Molecular Systems Biology, Volume 4 . Article no. 202. doi:10.1038/msb.2008.44 ISSN 1744-4292.

Samy, Abdallah M., Esquivel Gomez, Luis Roger, Savin, Cyril, Andrianaivoarimanana, Voahangy, Rahajandraibe, Soloandry, Randriantseheno, Lovasoa Nomena, Zhou, Zhemin, Kocher, Arthur, Didelot, Xavier, Rajerison, Minoarisoa and Kühnert, Denise (2023) Phylogenetic analysis of the origin and spread of plague in Madagascar. PLoS Neglected Tropical Diseases, 17 (5). e0010362. doi:10.1371/journal.pntd.0010362 ISSN 1935-2727. (In Press)

Sand, Charles, Njunge, James, Mwongeli, Joyce, Mutunga, Martin, Chege, Timothy, Gicheru, Elijah, Gardiner, Elizabeth, Gwela, Agnes, Drysdale, Simon, Green, Christopher, Berkley, James, Nokes, D. James and Pollard, Andrew J. (2019) Airway response to respiratory syncytial virus has incidental antibacterial effects. Nature Communications, 10 (1). 2218. doi:10.1038/s41467-019-10222-z ISSN 2041-1723.

Sandu, Pamela, Crepin, Valerie F., Drechsler, Hauke, McAinsh, Andrew D., Frankel, Gad and Berger, Cedric N. (2017) The Enterohemorrhagic Escherichia coli effector EspW triggers actin remodeling in a Rac1-dependent manner. Infection and Immunity, 85 (9). e00244-17. doi:10.1128/IAI.00244-17 ISSN 0019-9567.

Sanghera, Narinder and Pinheiro, Teresa J. T. (2000) Unfolding and refolding of cytochrome c driven by the interaction with lipid micelles. Protein Science, Vol.9 (No.6). pp. 1194-1202. doi:10.1110/ps.9.6.1194 ISSN 1194-1202.

Sarkar, Sourav, Dalgaard, Jacob Z., Millar, Jonathan B. A. and Arumugam, Prakash (2014) The rim15-Endosulfine-PP2ACdc55 signalling module regulates entry into gametogenesis and quiescence via distinct mechanisms in budding yeast. PLoS Genetics, Volume 10 (Number 6). Article number e1004456. doi:10.1371/journal.pgen.1004456 ISSN 1553-7390.

Saunders, Nigel J., Boonmee, Prawit , Peden, John F. and Jarvis, Stephen A. (2005) Inter-species horizontal transfer resulting in core-genome and niche-adaptive variation within Helicobacter pylori. BMC Genomics, Vol.6 (No.9). doi:10.1186/1471-2164-6-9 ISSN 1471-2164.

Sayyid, Faiz and Kalvala, Sara (2016) On the importance of modelling the internal spatial dynamics of biological cells. Biosystems, 145 . pp. 53-66. doi:10.1016/j.biosystems.2016.05.012 ISSN 0303-2647.

Schleker, Sylvia, Kshirsagar, Meghana and Klein-Seetharaman, Judith (2015) Comparing human–Salmonella with plant–Salmonella protein–protein interaction predictions. Frontiers in Microbiology, 6 . 45. doi:10.3389/fmicb.2015.00045 ISSN 1664-302X.

Schwall, Christian P., Loman, Torkel E, Martins, Bruno M. C., Cortijo, Sandra, Villava, Casandra, Kusmartsev, Vassili, Livesey, Toby, Saez, Teresa and Locke, James C. W. (2021) Tunable phenotypic variability through an autoregulatory alternative sigma factor circuit. Molecular Systems Biology, 17 (7). e9832. doi:10.15252/msb.20209832 ISSN 1744-4292.

Schäfer, Hendrik, Myronova, Natalia and Boden, Rich (2010) Microbial degradation of dimethylsulphide and related C1-sulphur compounds: organisms and pathways controlling fluxes of sulphur in the biosphere. Journal of Experimental Botany, Vol.61 (No.2). pp. 315-334. doi:10.1093/jxb/erp355 ISSN 0022-0957.

Sclep, Gert, Allemeersch, Joke, Liechti, Robin, De Meyer, Björn, Beynon, Jim, Bhalerao, Rishikesh P., Moreau, Yves, Nietfeld, Wilfried, Renou, Jean-Pierre, Reymond, Philippe, Kuiper, Martin T.R. and Hilson, Pierre (2007) CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes. BMC Bioinformatics, Vol.8 (No.400). doi:10.1186/1471-2105-8-400 ISSN 1471-2105.

(2022) Role of immunosuppression in an antibiotic stewardship intervention and its association with clinical outcomes and antibiotic use : protocol for an observational study (RISC-sepsis). BMJ Open, 12 (12). e068321. doi:10.1136/bmjopen-2022-068321 ISSN 2044-6055.

Sebastián, Marta, Smith, Alastair F., González, José M., Fredricks, Helen F., Van Mooy, Benjamin, Koblížek, Michal, Brandsma, Joost, Koster, Grielof, Mestre, Mireia, Mostajir, Behzad, Pitta, Paraskevi, Postle, Anthony D., Sánchez, Pablo, Gasol, Josep M., Scanlan, David J. and Chen, Yin (2016) Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency. The ISME Journal, 10 (4). pp. 968-978. doi:10.1038/ismej.2015.172 ISSN 1751-7362.

Selama, Okba, Amos, Gregory C. A., Djenane, Zahia, Borsetto, Chiara, Laidi, Rabah Forar, Porter, David, Nateche, Farida, Wellington, E. M. H. and Hacène, Hocine (2014) Screening for genes coding for putative antitumor compounds, antimicrobial and enzymatic activities from haloalkalitolerant and haloalkaliphilic bacteria strains of Algerian Sahara soils. BioMed Research International, 2014 . Article number 317524. doi:10.1155/2014/317524 ISSN 2314-6133.

Senghore, Madikay, Chaguza, Chrispin, Bojang, Ebrima, Tientcheu, Peggy-Estelle, Bancroft, Rowan E., Lo, Stephanie W., Gladstone, Rebecca A., McGee, Lesley, Worwui, Archibald, Foster-Nyarko, Ebenezer, Ceesay, Fatima, Okoi, Catherine Bi, Klugman, Keith P., Breiman, Robert F., Bentley, Stephen D., Adegbola, Richard, Antonio, Martin, Hanage, William P. and Kwambana-Adams, Brenda A. (2022) Widespread sharing of pneumococcal strains in a rural African setting : proximate villages are more likely to share similar strains that are carried at multiple timepoints. Microbial Genomics, 8 (2). doi:10.1099/mgen.0.000732 ISSN 2057-5858.

Sens, Pierre and Turner, Matthew S. (2004) Theoretical model for the formation of caveolae and similar membrane invaginations. Biophysical Journal, Vol.86 (No.4). pp. 2049-2057. doi:10.1016/S0006-3495(04)74266-6 ISSN 0006-3495.

Sergaki, Chrysi, Lagunas, Beatriz, Lidbury, Ian, Gifford, Miriam L. and Schäfer, Patrick (2018) Challenges and approaches in microbiome research : from fundamental to applied. Frontiers in Plant Science, 9 . 1205. doi:10.3389/fpls.2018.01205 ISSN 1664-462X.

Sergeant, Martin J., Constantinidou, Chrystala, Cogan, Tristan A., Bedford, Michael R., Penn, Charles W. and Pallen, Mark J. (2014) Extensive microbial and functional diversity within the chicken cecal microbiome. PLoS ONE , Volume 9 (Number 3). Article number e91941. doi:10.1371/journal.pone.0091941 ISSN 1932-6203.

Severn, C. E., Eissa, Ahmed M., Langford, C. R., Parker, A., Walker, Marc, Dobbe, J. G. G., Streekstra, G .J., Cameron, Neil R. and Toye, A. M. (2019) Ex vivo culture of adult CD34+ stem cells using functional highly porous polymer scaffolds to establish biomimicry of the bone marrow niche. Biomaterials, 225 . 119533. doi:10.1016/j.biomaterials.2019.119533 ISSN 0142-9612.

Shah, Kunal M., Webber, Jason, Dr., Carzaniga, Raffaella, Taylor, Deborah M., Fusi, Luca, Clayton, Aled, Brosens, Jan J., Hartshorne, Geraldine M. and Christian, Mark (2013) Induction of microRNA resistance and secretion in differentiating human endometrial stromal cells. Journal of Molecular Cell Biology, Volume 5 (Number 1). pp. 67-70. doi:10.1093/jmcb/mjs058 ISSN 1674-2788.

Shahram, Masoud, Nicholas, Robin, Miles, Roger (Roger J.), Wood, Ann P. and Kelly, Donovan P. (2009) Kinetics of substrate oxidation and hydrogen peroxide production by Mycoplasma mycoides subsp. mycoides Large Colony (LC) type and Mycoplasma mycoides subsp. capri. Research in Veterinary Science, Vol.87 (No.3). pp. 364-366. doi:10.1016/j.rvsc.2009.04.012 ISSN 0034-5288.

Shahram, Masoud, Nicholas, Robin, Wood, Ann P. and Kelly, Donovan P. (2009) Further evidence to justify reassignment of Mycoplasma mycoides subspecies mycoides Large Colony type to Mycoplasma mycoides subspecies capri. Systematic and Applied Microbiology, 33 (1). pp. 20-24. doi:10.1016/j.syapm.2009.10.003 ISSN 0723-2020.

(2023) Dynamic changes of the Prf/Pto tomato resistance complex following effector recognition. Nature Communications, 14 (1). 2568. doi:10.1038/s41467-023-38103-6 ISSN 2041-1723.

Shen, Shensi, Rodrigo, Guillermo, Prakash, Satya, Majer, Eszter, Landrain, Thomas E., Kiro, Boris, Daros, Jose-Antonio and Jaramillo, Alfonso (2015) Dynamic signal processing by ribozyme-mediated RNA circuits to control gene expression. Nucleic Acids Research, 43 (10). pp. 5158-5170. doi:10.1093/nar/gkv287 ISSN 0305-1048.

Sheridan, Paul O., Raguideau, Sébastien, Quince, Christopher, Holden, Jennifer, Thames Consortium, , Zhang, Lihong, Gubry-Rangin, Cécile and Williams, Tom A. (2020) Gene duplication drives genome expansion in a major lineage of Thaumarchaeota. Nature Communications, 11 (1). 5494. doi:10.1038/s41467-020-19132-x ISSN 2041-1723.

Sherrard-Smith, Ellie, Churcher, Thomas S., Upton, Leanna M., Sala, Katarzyna A., Zakutansky, Sara E., Slater, Hannah C., Blagborough, Andrew M. and Betancourt, Michael (2017) A novel model fitted to multiple life stages of malaria for assessing efficacy of transmission-blocking interventions. Malaria Journal, 16 (1). 137. doi:10.1186/s12936-017-1782-3 ISSN 1475-2875.

Shi, Wei, Zhao, Hui-Yu, Chen, Yin, Wang, Jin-Song, Han, Bing, Li, Cong-Ping, Lu, Jun-Yuan and Zhang, Li-Mei (2021) Organic manure rather than phosphorus fertilization primarily determined asymbiotic nitrogen fixation rate and the stability of diazotrophic community in an upland red soil. Agriculture, Ecosystems & Environment, 319 . 107535. doi:10.1016/j.agee.2021.107535 ISSN 0167-8809.

Shi, Yanbo, Harvey, Ian, Campopiano, Dominic and Sadler, P. J. (2010) Niobium uptake and release by bacterial ferric ion binding protein. Bioinorganic Chemistry and Applications . doi:10.1155/2010/307578 ISSN 1565-3633.

Shih, P -Y., Lee, J. S., Shinya, R., Kanzaki, N., Pires-da Silva, André Francisco, Badroos, J. M., Goetz, E., Sapir, A. and Sternberg, P. W. (2019) Newly identified nematodes from Mono Lake exhibit extreme arsenic resistance. Current Biology, 29 (19). 3339-3344.E4. doi:10.1016/j.cub.2019.08.024 ISSN 0960-9822.

Sierocinski, Pawel, Bayer, Florian, Yvon-Durocher, Gabriel, Burdon, Melia, Großkopf, Tobias, Alston, Mark, Swarbreck, David, Hobbs, Phil J., Soyer, Orkun S. and Buckling, Angus (2018) Biodiversity-function relationships in methanogenic communities. Molecular Ecology, 27 (22). pp. 4641-4651. doi:10.1111/mec.14895 ISSN 0962-1083.

Sierocinski, Pawel, Milferstedt, Kim, Bayer, Florian, Großkopf, Tobias, Alston, Mark, Bastkowski, Sarah, Swarbreck, David, Hobbs, Phil J., Soyer, Orkun S., Hamelin, Jérôme and Buckling, Angus (2017) A single community dominates structure and function of a mixture of multiple methanogenic communities. Current Biology, 27 (21). 3390-3395.e4. doi:10.1016/j.cub.2017.09.056 ISSN 0960-9822.

Silberberg, Jakob M., Stock, Charlott, Hielkema, Lisa, Corey, Robin A., Rheinberger, Jan, Wunnicke, Dorith, Dubach, Victor R. A., Stansfeld, Phillip J., Hänelt, Inga and Paulino, Cristina (2022) Inhibited KdpFABC transitions into an E1 off-cycle state. eLife, 11 . doi:10.7554/elife.80988 ISSN 2050-084X.

(2009) Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biology (Online), Vol.10 (No.5). R51. doi:10.1186/gb-2009-10-5-r51 ISSN 1474-760X.

Simcox, Lee J., Pereira, Rui P. A., Wellington, E. M. H. and Macpherson, Julie V. (2019) Boron doped diamond as a low biofouling material in aquatic environments : assessment of pseudomonas aeruginosa biofilm formation. ACS Applied Materials and Interfaces, 11 . 28. doi:10.1021/acsami.9b07245 ISSN 1944-8244.

Simpson, Daniel H., Hapeshi, Alexia, Rogers, Nicola J., Brabec, Viktor, Clarkson, Guy J., Fox, David J., Hrabina, Ondrej, Kay, Gemma L., King, Andrew, Malina, Jaroslav, Millard, Andrew D., Moat, John, Roper, David I., Song, Hualong, Waterfield, Nicholas R. and Scott, Peter (2019) Metallohelices that kill Gram-negative pathogens using intracellular antimicrobial peptide pathways. Chemical Science, 10 . 9708-9720. doi:10.1039/C9SC03532J ISSN 2041-6520.

Sinclair, Lucas, Ijaz, Umer Z., Jensen, Lars Juhl, Coolen, Marco J.L., Gubry-Rangin, Cecile, Chroňáková, Alica, Oulas, Anastasis, Pavloudi, Christina, Schnetzer, Julia, Weimann, Aaron, Ijaz, Ali, Eiler, Alexander, Quince, Christopher and Pafilis, Evangelos (2016) Seqenv : linking sequences to environments through text mining. PeerJ, 4 . e2690. doi:10.7717/peerj.2690 ISSN 2167-8359.

Singh, Shivani S., Typas, Athanasios, Hengge, Regine and Grainger, David C. (2011) Escherichia coli σ70 senses sequence and conformation of the promoter spacer region. Nucleic Acids Research, Vol.39 (No.12). pp. 5109-5118. doi:10.1093/nar/gkr080 ISSN 1362-4962.