Journal Article

Abuhammad, Areej, Fullam, Elizabeth, Bhakta, Sanjib, Russell, Angela, Morris, Garrett, Finn, Paul and Sim, Edith (2014) Exploration of piperidinols as potential antitubercular agents. Molecules, Volume 19 (Number 10). pp. 16274-16290. doi:10.3390/molecules191016274

Abuhammad, Areej, Fullam, Elizabeth, Lowe, Edward D., Staunton, David, Kawamura, Akane, Westwood, Isaac, Bhakta, Sanjib, Garner, Alun Christopher, Wilson, David L., Seden, Peter T., Davies, Stephen G., Russell, Angela J., Garman, Elspeth F. and Sim, Edith (2012) Piperidinols that show anti-tubercular activity as inhibitors of arylamine N-acetyltransferase: an essential enzyme for mycobacterial survival inside macrophages. PLoS One, Volume 7 (Number 12). Article number e52790. doi:10.1371/journal.pone.0052790

Achtman, Mark (2011) A broad brush, global overview of bacterial sexuality. PLoS Genetics, Volume 7 (Number 8). Article number e1002255. doi:10.1371/journal.pgen.1002255

Achtman, Mark, Wain, John, Weill, François-Xavier, Nair, Satheesh, Zhou, Zhemin, Sangal, Vartul, Krauland, Mary G., Hale, James L., Harbottle, Heather, Uesbeck, Alexandra, Dougan, Gordon, Harrison, Lee H. and Brisse, Sylvain (2012) Multilocus sequence typing as a replacement for serotyping in salmonella enterica. PLoS Pathogens, Volume 8 (Number 6). Article number e1002776. doi:10.1371/journal.ppat.1002776

Agoti, Charles N., Mwihuri, Alexander G., Sande, Charles J., Onyango, Clayton O., Medley, Graham, Cane, Patricia and Nokes, D. James (2012) Genetic relatedness of infecting and reinfecting respiratory syncytial virus strains identified in a birth cohort from rural Kenya. Journal of Infectious Diseases, Volume 206 (Number 10). pp. 1532-1541. doi:10.1093/infdis/jis570

Ahangar, Mohd Syed, Furze, Christopher M., Guy, Collette S., Cooper, Charlotte, Maskew, Kathryn S, Graham, Benjamin T., Cameron, Alexander and Fullam, Elizabeth (2018) Structural and functional determination of homologs of the Mycobacterium tuberculosis N-acetylglucosamine-6-phosphate deacetylase (NagA). Journal of Biological Chemistry, 293 (25). pp. 9770-9783. doi:10.1074/jbc.RA118.002597

Ahlstrom, Christina, Muellner, Petra, Spencer, Simon E. F., Hong, Samuel, Saupe, Amy, Rovira, Albert, Hedberg, Craig, Perez, Andres, Muellner, Ulrich and Alvarez, Julio (2017) Inferring source attribution from a multi-year multi-source dataset of Salmonella in Minnesota. Zoonoses and Public Health, 64 (8). pp. 589-598. doi:10.1111/zph.12351

STREAM Consortium (Including: Alam, Mohammad T., Merlo, Maria E., Hodgson, D. A., Wellington, E. M. H., Takano, Eriko and Breitling, Rainer). (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (No.202). p. 202. doi:10.1186/1471-2164-11-202

Alam, Mohammad Tauqee, Takano, Eriko and Breitling, Rainer (2011) Prioritizing orphan proteins for further study using phylogenomics and gene expression profiles in Streptomyces coelicolor. BMC Research Notes, 4 . p. 325. doi:10.1186/1756-0500-4-325

Alberti, Fabrizio, Leng, Daniel J., Wilkening, Ina, Song, Lijiang, Tosin, Manuela and Corre, Christophe (2019) Triggering the expression of a silent gene cluster from genetically intractable bacteria results in scleric acid discovery. Chemical Science, 10 (2). pp. 453-463. doi:10.1039/C8SC03814G

Alderwick, Luke J., Lloyd, Georgina S., Lloyd, Adrian, Lovering, Andrew L., Eggeling, L. and Besra, Gurdyal S. (2011) Biochemical characterization of the Mycobacterium tuberculosis phosphoribosyl-1-pyrophosphate synthetase. Glycobiology, Vol.21 (No.4). pp. 410-425. doi:10.1093/glycob/cwq173

Aletrari, Mina-Olga , McKibbin, Craig, Williams, Helen, Pawar, Vidya, Pietroni, Paola, Lord, Mike, Flitsch, Sabine L., Whitehead, Roger C., Swanton, Eileithyia, High, Stephen and Spooner, Robert A. (2011) Eeyarestatin 1 interferes with both retrograde and anterograde intracellular trafficking pathways. PLoS One, Vol.6 (No.7). e22713. doi:10.1371/journal.pone.0022713

Ali, Adnan, Somfai, Ellák and Grosskinsky, Stefan (2012) Reproduction-time statistics and segregation patterns in growing populations. Physical Review E, Vol.85 (No.2). Article no. 021923. doi:10.1103/PhysRevE.85.021923

Ali, H. Raza, Dariush, Aliakbar, Provenzano, Elena, Bardwell, Helen, Abraham, Jean E., Iddawela, Mahesh, Vallier, Anne-Laure, Hiller, Louise, Dunn, Janet A., Bowden, Sarah J., Hickish, Tamas, McAdam, Karen, Houston, Stephen, Irwin, Mike J., Pharoah, Paul D. P., Brenton, James D., Walton, Nicholas A., Earl, Helena M. and Caldas, Carlos (2016) Computational pathology of pre-treatment biopsies identifies lymphocyte density as a predictor of response to neoadjuvant chemotherapy in breast cancer. Breast Cancer Research, 18 (1). 21. doi:10.1186/s13058-016-0682-8

Alix, Karine, Joets, Johann, Ryder, Carol D., Moore, Jonathan D., Barker, Guy C., Bailey, John P., King , Graham J. and Heslop-Harrison, J. (John) (2008) The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation. Plant Journal, Vol.56 (No.6). pp. 1030-1044. doi:10.1111/j.1365-313X.2008.03660.x

(2019) Effect of point-of-care C-reactive protein testing on antibiotic prescription in febrile patients attending primary care in Thailand and Myanmar : an open-label, randomised, controlled trial. The Lancet Global Health, 7 (1). E119-E131. doi:10.1016/S2214-109X(18)30444-3

Alves, Patrícia M., Al-Badi, Eide, Withycombe, Cathryn, Jones, Paul M, Purdy, Kevin J. and Maddocks, Sarah E. (2018) Interaction between Staphylococcus aureus and Pseudomonas aeruginosa is beneficial for colonisation and pathogenicity in a mixed-biofilm. Pathogens and disease, 76 (1). fty003. doi:10.1093/femspd/fty003

Amessou, Mohamed, Fradagrada, Alexandre, Falguières, Thomas, Lord, Mike, Smith, Daniel C., Roberts, L. M. (Lynne M.), Lamaze, Christophe and Johannes, Ludger (2007) Syntaxin 16 and syntaxin 5 are required for efficient retrograde transport of several exogenous and endogenous cargo proteins. Journal of Cell Science, Vol.120 (No.8). pp. 1457-1468. doi:10.1242/jcs.03436

Amin, Dina, Abolmaaty, Assem , Tolba, Sahar , Abdallah, Nagwa and Wellington, E. M. H. (2018) Phylogenic characteristics of a unique antagonistic micromonospora Sp. Rc5 to S. aureus isolated from Sinai Desert of Egypt. Annual Research & Review in Biology, 22 (2). pp. 1-15. doi:10.9734/ARRB/2018/38318

Amin, Munia, Kothamachu, Varun B., Feliu, Elisenda, Scharf, Birgit E., Porter, Steven L. and Soyer, Orkun S. (2014) Phosphate sink containing two-component signaling systems as tunable threshold devices. PLoS Computational Biology, Volume 10 (Number 10). Article number e1003890. doi:10.1371/journal.pcbi.1003890

Amos, Gregory C. A., Borsetto, Chiara, Laskaris, Paris, Krsek, Martin, Berry, Andrew E., Newsham, Kevin K., Calvo-Bado, Leo A., Pearce, David A., Vallin, Carlos and Wellington, E. M. H. (2015) Designing and implementing an assay for the detection of rare and divergent NRPS and PKS clones in European, Antarctic and Cuban soils. PLoS One, 10 (9). pp. 1-15. e0138327. doi:10.1371/journal.pone.0138327

Amos, Gregory C. A., Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment. Journal of Antimicrobial Chemotherapy, Volume 69 (Number 7). pp. 1785-1791. doi:10.1093/jac/dku079

Amos, Gregory C. A., Ploumakis, Semina, Zhang, Lihong, Hawkey, Peter M., Gaze, William H. and Wellington, E. M. H. (2018) The widespread dissemination of integrons throughout bacterial communities in a riverine system. The ISME Journal, 12 (3). pp. 681-691. doi:10.1038/s41396-017-0030-8

Anonye, Blessing (2018) Commentary : Bacteriophage transfer during faecal microbiota transplantation in Clostridium difficile infection is associated with treatment outcome. Frontiers in Cellular and Infection Microbiology, 8 . 104. doi:10.3389/fcimb.2018.00104

Anonye, Blessing (2016) General commentary on : alternatives to antibiotic growth promoters in animals. Frontiers in Veterinary Science, 3 . 74. doi:10.3389/fvets.2016.00074

Araújo, Carlos Leonardo de A., Dias, Larissa M., Veras, Adonney A. O., Alves, Jorianne T. C., Cavalcante, Ana Lídia Q., Dowson, Christopher G., Azevedo, Vasco, Ramos, Rommel T. J., Silva, Artur and Carneiro, Adriana R. (2016) Whole-genome sequence of Corynebacterium pseudotuberculosis 262 biovar equi isolated from cow milk. Genome Announcements, 4 (2). e00176. doi:10.1128/genomeA.00176-16

Armond, Jonathan W., Vladimirou, Elina, McAinsh, Andrew D. and Burroughs, Nigel John (2016) KiT : a MATLAB package for kinetochore tracking. Bioinformatics, 32 (12). pp. 1917-1919. doi:10.1093/bioinformatics/btw087

Asiani, Karishma R., Williams, Huw, Bird, Louise, Jenner, Matthew, Searle, Mark S., Hobman, Jon L., Scott, David J. and Soultanas, Panos (2016) SilE is an intrinsically disordered periplasmic ‘molecular sponge' involved in bacterial silver resistance. Molecular Microbiology, 101 (5). pp. 731-742. doi:10.1111/mmi.13399

Auguste, Peter, Tsertsvadze, Alexander, Court, Rachel A. and Pink, Joshua (2016) A systematic review of economic models used to assess the cost-effectiveness of strategies for identifying latent tuberculosis in high-risk groups. Tuberculosis, 99 . pp. 81-91. doi:10.1016/j.tube.2016.04.007

Auguste, Peter, Tsertsvadze, Alexander, Pink, Joshua, Court, Rachel A., McCarthy, Noel D., Sutcliffe, P. (Paul) and Clarke, Aileen (2017) Comparing interferon-gamma release assays with tuberculin skin test for identifying latent tuberculosis infection that progresses to active tuberculosis : systematic review and meta-analysis. BMC Infectious Diseases, 17 (1). doi:10.1186/s12879-017-2301-4

Awofisayo-Okuyelu, A., Hall, I., Adak, G., Hawker, J. I., Abbott, Susan and McCarthy, Noel D. (2017) A systematic review and meta-analysis on the incubation period of Campylobacteriosis. Epidemiology and Infection, 145 (11). pp. 2241-2253. doi:10.1017/S0950268817001303

Awofisayo-Okuyelu , Adedoyin , McCarthy, Noel D., Mgbakor , Ifunanya and Hall, Ian (2018) Incubation period of typhoidal salmonellosis : a systematic review and meta-analysis of outbreaks and experimental studies occurring over the last century. BMC Infectious Diseases, 18 . 483. doi:10.1186/s12879-018-3391-3

Babataheri, Avin, Roper, Marcus, Fermigier, Marc and Du Roure, Olivia (2011) Tethered fleximags as artificial cilia. Journal of Fluid Mechanics, Vol.678 . pp. 5-13. doi:10.1017/S002211201100005X

Badescu, George O., Marsh, Andrew, Smith, Timothy R., Thompson, Andrew J. and Napier, R. (Richard) (2016) Kinetic characterisation of a single chain antibody against the Hormone Abscisic Acid : comparison with its parental monoclonal. PLoS One, 11 (3). pp. 1-14. e0152148. doi:10.1371/journal.pone.0152148

Bai, Chenyao, Leeson, Mark S. and Higgins, Matthew D. (2014) Minimum energy channel codes for molecular communications. Electronics Letters, 50 (23). pp. 1669-1671. doi:10.1049/el.2014.3345

Bai, Chenyao, Leeson, Mark S. and Higgins, Matthew D. (2015) Performance of SW-ARQ in bacterial quorum communications. Nano Communication Networks, Volume 6 (Number 1). pp. 3-14. doi:10.1016/j.nancom.2014.11.001

Bai, Chenyao, Leeson, Mark S., Higgins, Matthew D. and Lu, Yi (2016) Throughput and energy efficiency based packet size optimization of ARQ protocols in bacterial quorum communications. Transactions on Emerging Telecommunications Technologies, 27 (8). pp. 1128-1143. doi:10.1002/ett.3055

Baldwin, Adam, Loughlin, Michael, Dr., Caubilla-Barron, Juncal, Kucerova, Eva, Manning, Georgina, Dowson, Christopher G. and Forsythe, S. J. (Steve J.) (2009) Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable clonal structures with clinical significance which do not correlate with biotypes. BMC Microbiology, Vol.9 (Article 223). doi:10.1186/1471-2180-9-223

Baltrus, David A., Nishimura, Marc T., Dougherty, Kevin M., Biswas, Surojit, Mukhtar, M. Shahid, Vicente, Joana G., Holub, E. B. and Dangl, J. L. (Jeffery L.) (2012) The molecular basis of host specialization in bean pathovars of Pseudomonas syringae. Molecular Plant-Microbe Interactions, Vol.25 (No.7). pp. 877-888. doi:10.1094/MPMI-08-11-0218

Bass, David, van der Gast, Christopher, Thomson, Serena K., Neuhauser, Sigrid, Hilton, Sally and Bending, G. D. (2018) Plant rhizosphere selection of plasmodiophorid lineages from bulk soil : the importance of “hidden” diversity. Frontiers in Microbiology, 9 . 168. doi:10.3389/fmicb.2018.00168

Bathe, Stephan and Hausner, Martina (2006) Design and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities. BMC Microbiology, Vol.6 (No.54). doi:10.1186/1471-2180-6-54

Batson, Sarah, Rea, Dean, Fülöp, Vilmos and Roper, David I. (2010) Crystallization and preliminary X-ray analysis of a D-alanyl-D-alanine ligase (EcDdlB) from Escherichia coli. Journal of Experimental Psychology: Human Perception and Performance, Vol.66 (No.4). pp. 405-408. doi:10.1107/S1744309110003970

Batson, Sarah, de Chiara, Cesira, Majce, Vita, Lloyd, Adrian J., Gobec, Stanislav, Rea, Dean, Fülöp, Vilmos, Thoroughgood, Christopher W., Simmons, Katie J., Dowson, Christopher G., Fishwick, Colin W. G., de Carvalho, Luiz Pedro S. and Roper, David I. (2017) Inhibition of D-Ala : D-Ala ligase through a phosphorylated form of the antibiotic D-cycloserine. Nature Communications, 8 (1). 1939 . doi:10.1038/s41467-017-02118-7

(2015) Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition. Infection and Immunity, Volume 83 (Number 5). pp. 1749-1764. doi:10.1128/IAI.02810-14

Berg, Hugo van den , Molina-Paris, Carmen and Sewell, Andrew K. (2011) Specific T-cell activation in an unspecific T-cell repertoire. Science Progress, Vol.94 (No.3). pp. 245-264. doi:10.3184/003685011X13139280383942

Blanc-Mathieu, Romain, Verhelst, Bram, Derelle, Evelyne, Rombauts, Stephane, Bouget, François-Yves , Carré, Isabelle A., Château, Annie, Eyre-Walker, Adam, Grimsley, Nigel, Moreau, Hervé, Piégu, Benoit, Rivals, Eric , Schackwitz, Wendy, Peer, Yves van de and Piganeau, Gwenaël (2014) An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. BMC Genomics, Volume 15 . pp. 1-11. Article number 1103. doi:10.1186/1471-2164-15-1103

Blindauer, Claudia A. (2015) Advances in the molecular understanding of biological zinc transport. Chemical Communications, 51 (22). pp. 4544-4563. doi:10.1039/c4cc10174j

Boden, Rich, Cleland, David, Green, Peter N., Katayama, Yoko, Uchino, Yoshihito, Murrell, J. C. (J. Colin) and Kelly, Donovan P. (2011) Phylogenetic assessment of culture collection strains of Thiobacillus thioparus, and definitive 16S rRNA gene sequences for T. thioparus, T. denitrificans, and Halothiobacillus neapolitanus. Archives of Microbiology, Vol.194 (No.3). pp. 187-195. doi:10.1007/s00203-011-0747-0

Boden, Rich, Thomas, Elizabeth, Savani, Parita, Kelly, Donovan P. and Wood, Ann P. (2008) Novel methylotrophic bacteria isolated from the River Thames (London, UK). Environmental Microbiology , Vol.10 (No.12). pp. 3225-3236. doi:10.1111/j.1462-2920.2008.01711.x

Brabec, Viktor, Howson, Suzanne E., Kaner, Rebecca A., Lord, Rianne M., Malina, Jaroslav, Phillips, Roger M., Abdallah, Qasem M. A., McGowan, Patrick C., Rodger, Alison and Scott, Peter (2013) Metallohelices with activity against cisplatin-resistant cancer cells : does the mechanism involve DNA binding? Chemical Science, Volume 4 (Number 12). pp. 4407-4416. doi:10.1039/c3sc51731d

Brandizzi, Federica, Frigerio, Lorenzo, Howell, Stephen H. and Schäfer, Patrick (2014) Endoplasmic reticulum : shape and function in stress translation. Frontiers in Plant Science, Volume 5 . pp. 1-2. doi:10.3389/fpls.2014.00425

Brettin, Thomas S. (Thomas Scott), Altherr, Michael R., Du, Ying, Mason, Roxie M., Friedrich, Alexandra, Potter, Laura, Langford, Chris, Keller, Thomas J., Jens, Jason, Howie, Heather, Weyand, Nathan J., Clary, Susan, Prichard, Kimberley, Wachocki, Susi, Sodergren, Erica, Dillard, Joseph P., Dillard, George, So, Magdalene and Grove Arvidson , Cindy (2005) Expression capable library for studies of Neisseria gonorrhoeae, version 1.0. BMC Microbiology, Vol.5 (No.50). doi:10.1186/1471-2180-5-50

Brignall, Ruth, Cauchy, Pierre, Bevington, Sarah L., Gorman, Bethany, Pisco, Angela O., Bagnall, James, Boddington, Christopher, Rowe, William, England, Hazel, Rich, Kevin, Schmidt, Lorraine, Dyer, Nigel P., Travis, Mark A., Ott, Sascha, Jackson, Dean A., Cockerill, Peter N. and Paszek, Pawel (2017) Integration of kinase and calcium signaling at the level of chromatin underlies inducible gene activation in T cells. The Journal of Immunology, 199 (8). pp. 2652-2667. ji1602033. doi:10.4049/jimmunol.1602033

Brodel, Andreas K., Jaramillo, Alfonso and Isalan, Mark (2017) Intracellular directed evolution of proteins from combinatorial libraries based on conditional phage replication. Nature Protocols, 12 (9). pp. 1830-1843. doi:10.1038/nprot.2017.084

Brumley, Douglas R., Wan, Kirsty Y., Polin, Marco and Goldstein, Raymond E. (2014) Flagellar synchronization through direct hydrodynamic interactions. eLife, Volume 3 . Article number e02750. doi:http://dx.doi.org/10.7554/eLife.02750

Bryan, Samantha J., Burroughs, Nigel John, Evered, Carol, Sacharz, Joanna, Nenninger, Anja, Mullineaux, Conrad W. and Spence, Edward M. (2011) Loss of the SPHF homologue Slr1768 leads to a catastrophic failure in the maintenance of thylakoid membranes in synechocystis sp. PCC 6803. PLoS One, Vol.6 (No.5). e19625. doi:10.1371/journal.pone.0019625

Bryan, Samantha J., Burroughs, Nigel John, Shevela, Dmitriy, Yu, Jianfeng, Rupprecht, Eva, Liu, Lu-Ning, Mastroianni, Giulia, Xue, Quan, Llorente-Garcia, Isabel, Leake, Mark C., Eichacker, Lutz A., Schneider, Dirk, Nixon, Peter J. and Mullineaux, Conrad W. (2014) Localisation and interactions of the Vipp1 protein in cyanobacteria. Molecular Microbiology, Volume 94 (Number 5). pp. 1179-1195. doi:10.1111/mmi.12826

Bugg, Tim, Rodolis, Maria T., Mihalyi, Agnes and Jamshidi, Shirin (2016) Inhibition of phospho-MurNAc-pentapeptide translocase (MraY) by nucleoside natural product antibiotics, bacteriophage <phi>X174 lysis protein E, and cationic antibacterial peptides. Bioorganic and Medicinal Chemistry . doi:10.1016/j.bmc.2016.03.018

Byrne, Lisa, Dallman, Timothy J., Adams, Natalie, Mikhail, Amy F. W., McCarthy, Noel D. and Jenkins, Claire (2018) Highly pathogenic clone of Shiga toxin–producing Escherichia coli O157:H7, England and Wales. Emerging Infectious Diseases , 24 (12). pp. 2303-2308. doi:10.3201/eid2412.180409

Byrne-Bailey, K. G., Gaze, William H., Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2009) Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom. Antimicrobial Agents and Chemotherapy, Vol.53 (No.2). pp. 696-702. doi:10.1128/AAC.00652-07

Byrne-Bailey, K. G., Gaze, William H., Zhang, Lihong, Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2011) Integron prevalence and diversity in manured soil. Applied and Environmental Microbiology, Vol.77 (No.2). pp. 684-687. doi:10.1128/AEM.01425-10

Calvo-Bado, Leo A., Green, Laura E., Medley, Graham, Ul-Hassan, Atiya, Buller, Nicky B., Kaler, Jasmeet, Russell, Claire L., Kennan, Ruth M., Rood, Julian I., Wellington, E. M. H. and Grogono-Thomas, Rosemary (2010) Detection and diversity of a putative novel heterogeneous polymorphic proline-glycine repeat (Pgr) protein in the footrot pathogen Dichelobacter nodosus. Veterinary Microbiology, Vol.147 (No.3-4). pp. 358-366. doi:10.1016/j.vetmic.2010.06.024

Campbell, Kate, Vowinckel, Jakob, Mülleder, Michael, Malmsheimer, Silke, Lawrence, Nicola, Calvani, Enrica, Miller-Fleming, Leonor, Alam, Mohammad T., Christen, Stefan, Keller, Markus A. and Ralser, Markus (2015) Self-establishing communities enable cooperative metabolite exchange in a eukaryote. eLife, 4 . e09943.

Carbonero, Franck, Oakley, Brian B. and Purdy, Kevin J. (2014) Metabolic flexibility as a major predictor of spatial distribution in microbial communities. PLoS One, Volume 9 (Number 1). Article number e85105. doi:10.1371/journal.pone.0085105

Castro, Thiago L. P., Seyffert, Nubia, Ramos, Rommel T. J., Barbosa, Silvanira, Carvalho, Rodrigo D. O., Pinto, Anne Cybelle, Carneiro, Adriana Ribeiro, Silva, Wanderson Marques, Pacheco, Luis G. C., Downson, Christopher G., Schneider, Maria P. C., Miyoshi, Anderson, Azevedo, V. (Vasco) and Silva, Artur (2013) Ion torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method. Microbial Biotechnology, Volume 6 (Number 2). pp. 168-177. doi:10.1111/1751-7915.12020

Cavaliere, Matteo, Feng, Song, Soyer, Orkun S. and Jiménez, José I. (2017) Cooperation in microbial communities and their biotechnological applications. Environmental Microbiology, 19 (8). pp. 2949-2963. doi:10.1111/1462-2920.13767

Cevik, Volkan, Boutrot, Freddy, Apel, Wiebke, Robert-Seilaniantz, Alexandre, Furzer, Oliver J., Redkar, Amey, Castel, Baptiste, Kover, Paula, Prince, David C., Holub, E. B. and Jones, Jonathan D. G. (2019) Transgressive segregation reveals mechanisms of Arabidopsis immunity to Brassica-infecting races of white rust (Albugo candida). Proceedings of the National Academy of Sciences, 116 (7). pp. 2767-2773. doi:10.1073/pnas.1812911116

Challis, Gregory L. (2008) Mining microbial genomes for new natural products and biosynthetic pathways. Microbiology, Vol.154 (No.6). pp. 1555-1569. doi:10.1099/mic.0.2008/018523-0

Chamberlain, Kerry L., Marshall, Richard S., Jolliffe, Nicholas A., Frigerio, Lorenzo, Ceriotti, Aldo, Lord, Mike and Roberts, L. M. (Lynne M.) (2008) Ricin B chain targeted to the endoplasmic reticulum of tobacco protoplasts is degraded by a CDC48- and vacuole-independent mechanism. Journal of Biological Chemistry, Vol.283 (No.48). pp. 33276-33286. doi:10.1074/jbc.M805222200

Chan, Jacqueline, Millard, Andrew D., Mann, Nicholas H. and Schäfer, Hendrik (2014) Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes. Frontiers in Microbiology, Volume 5 . Article number 506. doi:10.3389/fmicb.2014.00506

Chan, Yi-Wah, Millard, Andrew D., Wheatley, Peter J., Holmes, Antony B., Mohr, Remus, Whitworth, Anna L., Mann, Nicholas H., Larkum, Anthony W. D., Hess, Wolfgang R., Scanlan, David J. and Clokie, Martha R. J. (2015) Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacteriumAcaryochloris marina. Environmental Microbiology, 17 (11). pp. 4239-4252. doi:10.1111/1462-2920.12735

Chan, Yi-Wah, Millard, Andrew D., Wheatley, Peter J., Holmes, Antony B., Mohr, Remus, Whitworth, Anna L., Mann, Nicholas H., Larkum, Anthony W. D., Hess, Wolfgang R., Scanlan, David J. and Clokie, Martha R. J. (2015) Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacterium Acaryochloris marina. Environmental Microbiology, 17 (11). pp. 4239-4252. doi:10.1111/1462-2920.12735

Chen, Jing and Gu, Ji-Dong (2017) Faunal burrows alter the diversity, abundance, and structure of AOA, AOB, anammox and n-damo communities in coastal mangrove sediments. Microbial Ecology, 74 (1). pp. 140-156. doi:10.1007/s00248-017-0939-5

Chen, Jing, Wade, Matthew J., Dolfing, Jan and Soyer, Orkun S. (2019) Increasing sulphate levels show a differential impact on synthetic communities comprising different methanogens and a sulphate reducer. Journal of The Royal Society Interface . (In Press)

Chen, Yin, McAleer, Kathryn L. and Murrell, J. C. (J. Colin) (2010) Monomethylamine as a nitrogen source for a nonmethylotrophic bacterium, Agrobacterium tumefaciens. Applied and Environmental Microbiology, Vol.76 (No.12). pp. 4102-4104. doi:10.1128/AEM.00469-10

Chen, Yin, Patel, Nisha A., Crombie, Andrew, Scrivens, James H. and Murrell, J. C. (J. Colin) (2011) Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. Proceedings of the National Academy of Sciences, Vol.108 (No.43). pp. 17791-17796. doi:10.1073/pnas.1112928108

Christie-Oleza, Joseph Alexander and Armengaud, Jean (2010) In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry : the Ruegeria pomeroyi DSS-3 case-study. Marine Drugs, Volume 8 (Number 8). pp. 2223-2239. doi:10.3390/md8082223

Christie-Oleza, Joseph Alexander, Armengaud, Jean, Guerin, Philippe and Scanlan, David J. (2015) Functional distinctness in the exoproteomes of marine Synechococcus. Environmental Microbiology, 17 (10). pp. 3781-3794. doi:10.1111/1462-2920.12822

Christie-Oleza, Joseph Alexander, Miotello, Guylaine and Armengaud, Jean (2012) High-throughput proteogenomics of Ruegeria pomeroyi : seeding a better genomic annotation for the whole marine Roseobacter clade. BMC Genomics, Volume 13 (Number 1). Article number 73. doi:10.1186/1471-2164-13-73

Christie-Oleza, Joseph Alexander, Nogales, Balbina, Martín-Cardona, Cèlia, Lanfranconi, Mariana P., Albertí, Sebastián, Lalucat, Jorge and Bosch, Rafael (2008) ISPst9, an ISL3-like insertion sequence from Pseudomonas stutzeri AN10 involved in catabolic gene inactivation. International Microbiology, Volume 11 (Number 2). pp. 101-110. doi:10.2436/20.1501.01.49

Christie-Oleza, Joseph Alexander, Scanlan, David J. and Armengaud, Jean (2015) “You produce while I clean up”, a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions. Proteomics, 15 (20). pp. 3454-3462. doi:10.1002/pmic.201400562

Christie-Oleza, Joseph Alexander, Sousoni, Despoina, Lloyd, Matthew, Armengaud, Jean and Scanlan, David J. (2017) Nutrient recycling facilitates long-term stability of marine microbial phototroph–heterotroph interactions. Nature microbiology, 2 . 17100. doi:10.1038/nmicrobiol.2017.100

Cizmeci, Deniz, Dempster, Emma L., Champion, Olivia L., Wagley, Sariqa, Akman, Ozgur E., Prior, Joann L., Soyer, Orkun S., Mill, Jonathan and Titball, Richard W. (2016) Mapping epigenetic changes to the host cell genome induced by Burkholderia pseudomallei reveals pathogen-specific and pathogen-generic signatures of infection. Scientific Reports, 6 . 30861. doi:10.1038/srep30861

Clarkson, John P., Staveley, John, Phelps, Kath, Young, Caroline and Whipps, J. M. (2003) Ascospore release and survival in Sclerotinia sclerotiorum. Mycological Research, Vol.10 (No.2). pp. 213-222. doi:10.1017/S0953756203007159

Clifton, Rachel, Green, Laura E. and Purdy, Kevin J. (2018) Development and validation of a multiple locus variable number tandem repeat analysis (MLVA) scheme for Fusobacterium necrophorum. Veterinary Microbiology, 213 . pp. 108-113. doi:10.1016/j.vetmic.2017.11.017

Clokie, Martha R. J., Millard, Andrew D., Mehta, Jaytry Y. and Mann, Nicholas H. (2006) Virus isolation studies suggest short-term variations in abundance in natural cyanophage populations of the Indian Ocean. Journal of the Marine Biological Association of the United Kingdom, Vol.86 (No.3). pp. 499-505. doi:10.1017/S0025315406013415

Cody, Alison J., McCarthy, Noel D., Bray, James E., Wimalarathna, Helen M. L., Colles, Frances M., van Rensburg, Melissa J., Dingle, Kate E., Waldenström, Jonas and Maiden, Martin C. J. (2015) Wild bird-associated Campylobacter jejuni isolates are a consistent source of human disease, in Oxfordshire, United Kingdom. Environmental Microbiology Reports, 7 (5). pp. 782-788. doi:10.1111/1758-2229.12314

Congdon, Thomas R., Dean, Bethany T., Kasperczak-Wright, James, Biggs, Caroline I., Notman, Rebecca and Gibson, Matthew I. (2015) Probing the biomimetic ice nucleation inhibition activity of poly(vinyl alcohol) and comparison to synthetic and biological polymers. Biomacromolecules, 16 (9). pp. 2820-2826. 150810155641002. doi:10.1021/acs.biomac.5b00774

(2016) What’s in a name? Species-wide whole-genome sequencing resolves invasive and noninvasive lineages of salmonella enterica serotype Paratyphi B. mBio, 7 (4). e00527-16. doi:10.1128/mBio.00527-16

Cosgriff, Sarah, Chintakayala, Kiran, Chim, Ya Tsz A., Chen, Xinyong, Allen, Stephanie (Researcher in Pharmacy), Lovering, Andrew L. and Grainger, David C. (2010) Dimerization and DNA-dependent aggregation of the Escherichia coli nucleoid protein and chaperone CbpA. Molecular Microbiology, Volume 77 (Number 5). pp. 1289-1300. doi:10.1111/j.1365-2958.2010.07292.x

Courtenay, Orin, Reilly, L. A., Keeling, Matthew James, Sweeney, F. P., Wellington, E. M. H., Macdonald, David W., Delahay, Richard J., Wilson, G. J. and Cheeseman, C. L. (2007) Performance of an environmental test to detect Mycobacterium bovis infection in badger social groups. Veterinary Record, The, Vol.161 . pp. 817-818. doi:10.1136/vr.161.24.817

Couto, Daniel, Niebergall, Roda, Liang, Xiangxiu, Bücherl, Christoph A., Sklenar, Jan, Macho, Alberto P., Ntoukakis, Vardis, Derbyshire, Paul, Altenbach, Denise, Maclean, Dan, Robatzek, Silke, Uhrig, Joachim, Menke, Frank, Zhou, Jian-Min and Zipfel, Cyril (2016) The Arabidopsis protein phosphatase PP2C38 negatively regulates the central immune kinase BIK1. PLoS Pathogens, 12 (8). e1005811. doi:10.1371/journal.ppat.1005811

Cox, M. J. and Medley, Graham (2003) Serological survey of anti-group A rotavirus IgM in UK adults. Epidemiology and Infection, Vol.131 (No.1). pp. 719-726. doi:10.1017/S0950268803008720

Cox, Michael J., Schäfer, Hendrik, Nightingale, Phillip D., McDonald, Ian R. and Murrell, J. C. (J. Colin) (2012) Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters. FEMS Microbiology Letters, Vol.334 (No.2). pp. 111-118. doi:10.1111/j.1574-6968.2012.02624.x

Crispin, Max, Chang, Veronica T., Harvey, David J., Dwek, Raymond A., Evans, Edward J., Stuart, David I., Jones, E. Yvonne, Lord, Mike, Spooner, Robert A. and Davis, Simon J. (2009) A human embryonic kidney 293T cell line mutated at the Golgi -mannosidase II locus. Journal of Biological Chemistry . doi:10.1074/jbc.M109.006254

Crispin, Max, Harvey, David J., Bitto, David, Bonomelli, Camille, Edgeworth, Matthew, Scrivens, James H., Huiskonen, Juha T. and Bowden, Thomas A. (2014) Structural plasticity of the Semliki Forest virus glycome upon interspecies transmission. Journal of proteome research, Volume 13 (Number 3). pp. 1702-1712. doi:10.1021/pr401162k

Crispin, Max, Harvey, David J., Bitto, David, Bonomelli, Camille, Edgeworth, Matthew, Scrivens, James H., Huiskonen, Juha T. and Bowden, Thomas A. (2014) Structural plasticity of the semliki forest virus glycome upon interspecies transmission. Journal of proteome research, Volume 13 (Number 3). pp. 1702-1712. doi:10.1021/pr401162k

Cunliffe, Michael, Whiteley, Andrew S., Newbold, Lindsay, Oliver, Anna, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2009) Comparison of bacterioneuston and bacterioplankton dynamics during a phytoplankton bloom in a fjord mesocosm. Applied and Environmental Microbiology, Vol.75 (No.22). pp. 7173-7181. doi:10.1128/AEM.01374-09

Darlington, Alexander P. S., Kim, Juhyun, Jiménez, José I. and Bates, Declan (2018) Dynamic allocation of orthogonal ribosomes facilitates uncoupling of co-expressed genes. Nature Communications, 9 (1). 695. doi:10.1038/s41467-018-02898-6

Davies, Sarah K., Fearn, Sarah, Allsopp, Luke P., Harrison, Freya, Ware, Ecaterina, Diggle, Stephen P., Filloux, Alain, McPhail, David S. and Bundy, Jacob G. (2017) Visualizing antimicrobials in bacterial biofilms : three-dimensional biochemical imaging using TOF-SIMS. mSphere, 2 (4). 2:e00211-17. doi:10.1128/mSphere.00211-17

Didelot, Xavier, Bowden, Rory, Street, Teresa, Golubchik, Tanya, Spencer, Chris, McVean, Gil, Sangal, Vartul, Anjum, Muna F., Achtman, Mark, Falush, Daniel and Donnelly, Peter (2011) Recombination and population structure in salmonella enterica. PLoS Genetics, Volume 7 (Number 7). Article number e1002191. doi:10.1371/journal.pgen.1002191

Didelot, Xavier, Urwin, Rachel, Maiden, Martin C. J. and Falush, Daniel (2009) Genealogical typing of Neisseria meningitidis. Microbiology, Vol.15 (No.10). pp. 3176-3186. doi:10.1099/mic.0.031534-0

Dimude, Juachi U., Stein, Monja, Andrzejewska, Ewa E., Khalifa, Mohammad S., Gajdosova, Alexandra, Retkute, Renata, Skovgaard, Ole and Rudolph, Christian J. (2018) Origins left, right, and centre : increasing the number of initiation sites in the escherichia coli chromosome. Genes, 9 (8). 376. doi:10.3390/genes9080376

Dingle, Kate E., Didelot, Xavier, Quan, T. Phuong, Eyre, David W., Stoesser, Nicole, Marwick, Charis A., Coia, John, Brown, Derek, Buchanan, Sarah, Ijaz, Umer Z., Goswami, Cosmika, Douce, Gill, Fawley, Warren N., Wilcox, Mark H., Peto, Timothy E. A., Walker, A. Sarah, Crook, Derrick W. and Keim, Paul (2019) A role for tetracycline selection in recent evolution of agriculture-associated clostridium difficile PCR ribotype 078. mBio, 10 (2). pp. 1-19. e02790. doi:10.1128/mBio.02790-18

Diviney, Sinéad, Tuplin, Andrew, Struthers, Madeleine, Armstrong, Victoria, Elliott, Richard M., Simmonds, Peter and Evans, David J. (2008) A hepatitis C virus cis-acting replication element forms a long-range RNA-RNA interaction with upstream RNA sequences in NS5B. Journal of Virology, Vol.82 (No.18). pp. 9008-9022. doi:10.1128/JVI.02326-07

Dixon, Ann M. and Roy, Syamal (2018) Role of membrane environment and membrane-spanning protein regions in assembly and function of the Class II Major Histocompatibility complex. Human Immunology . doi:10.1016/j.humimm.2018.07.004 (In Press)

Dixon, Emma V., Claridge, Jolyon K., Harvey, David J., Baruah, Kavitha, Yu, Xiaojie, Vesiljevic, Snezana, Mattick, Susan, Pritchard, Laura K., Krishna, Benjamin, Scanlan, Christopher N., Schnell, Jason R., Higgins, Matthew K., Zitzmann, Nicole and Crispin, Max (2014) Fragments of bacterial endoglycosidase S and immunoglobulin G reveal subdomains of each that contribute to deglycosylation. Journal of Biological Chemistry, Volume 289 (Number 20). pp. 13876-13889. doi:10.1074/jbc.M113.532812

Docherty, Sophia J., Davis, Oliver S. P., Haworth, Claire M. A., Plomin, Robert, D'Souza, Ursula and Mill, Jonathan (2012) A genetic association study of DNA methylation levels in the DRD4 gene region finds associations with nearby SNPs. Behavioral and Brain Functions, Volume 8 . Article number 31. doi:10.1186/1744-9081-8-31

Dorati, Federico, Barrett, Glyn, Sanchez-Contreras, Maria, Arseneault, Tanya, José, Mateo, Studholme, David, Murillo, Jesús, Caballero, Primitivo, Waterfield, Nicholas R., Arnold, Dawn, Shaw, Liz and Jackson, Robert (2018) Coping with environmental eukaryotes : identification of Pseudomonas syringae genes during the interaction with alternative hosts or predators. Microorganisms, 6 (2). 32. doi:10.3390/microorganisms6020032

Dorp, Lucy van, Wang, Qi, Shaw, Liam P., Acman, Mislav, Brynildsrud, Ola B., Eldholm, Vegard, Wang, Ruobing, Gao, Hua, Yin, Yuyao, Chen, Hongbin, Ding, Chuling, Farrer, Rhys A., Didelot, Xavier, Balloux, Francois and Wang, Hui (2019) Rapid phenotypic evolution in multidrug-resistant Klebsiella pneumoniae hospital outbreak strains. Microbial Genomics . doi:10.1099/mgen.0.000263 (In Press)

Dow, Claire E., Berg, Hugo van den, Roper, David I. and Rodger, Alison (2015) Biological insights from a simulation model of the critical FtsZ accumulation required for prokaryotic cell division. Biochemistry, 54 (24). pp. 3803-3813. doi:10.1021/acs.biochem.5b00261

Drenichev, Mikhail S., Bennett, Mark, Novikov, Roman A., Mansfield, John, Smirnoff, Nick, Grant, Murray R. and Mikhailov, Sergey N. (2019) A role for 3′-O-β-D-ribofuranosyladenosine in altering plant immunity. Phytochemistry Letters, 157 . pp. 128-134. doi:10.1016/j.phytochem.2018.10.016

Drevinek, Pavel, Baldwin, Adam, Dowson, Christopher G. and Mahenthiralingam, Eshwar (2008) Diversity of the parB and repA genes of the Burkholderia cepacia complex and their utility for rapid identification of Burkholderia cenocepacia. BMC Microbiology, Vol.8 (No.44). doi:10.1186/1471-2180-8-44

Drummond, Sheona P., Hildyard, John, Firczuk, Helena, Reamtong, Onrapak, Li, Ning, Kannambath, Shichina, Claydon, Amy J., Beynon, R. J. (Robert J.), Eyers, Claire E. and McCarthy, John E. G. (2011) Diauxic shift-dependent relocalization of decapping activators Dhh1 and Pat1 to polysomal complexes. Nucleic Acids Research, Vol.39 (No.17). pp. 7764-7774. doi:10.1371/journal.pone.0023630

Du Lac, Melchior, Scarpelli, Andrew H., Younger, Andrew K. D., Bates, Declan and Leonard, Joshua N. (2017) Predicting the dynamics and heterogeneity of genomic DNA content within bacterial populations across variable growth regimes. ACS Synthetic Biology, 6 (7). pp. 1131-1139. doi:10.1021/acssynbio.5b00217

Durighello, Emie, Christie-Oleza, Joseph Alexander and Armengaud, Jean (2014) Assessing the exoproteome of marine bacteria, lesson from a RTX-Toxin abundantly secreted by Phaeobacter strain DSM 17395. PLoS One, Volume 9 (Number 2). Article number e89691. doi:10.1371/journal.pone.0089691

Dutta, Ritaban, Hines, Evor, Gardner, J. W. and Boilot, Pascal (2002) Bacteria classification using Cyranose 320 electronic nose. BioMedical Engineering OnLine, Vol.1 (No.4). doi:10.1186/1475-925X-1-4

D’Amore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G., Gregory, Richard, Darby, Alistair C., Shakya, Migun, Podar, Mircea, Quince, Christopher and Hall, Neil (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17 (1). doi:10.1186/s12864-015-2194-9

(2013) Esperanto for histones : CENP-A, not CenH3, is the centromeric histone H3 variant. Chromosome Research, Volume 21 (Number 2). pp. 101-106. doi:10.1007/s10577-013-9347-y

Ebruke, Chinelo, Roca, Anna, Egere, Uzochukwu, Darboe, Ousainou, Hill, Philip C., Greenwood, Brian (Brian A.), Wren, Brendan, Adegbola, Richard A. and Antonio, Martin (2015) Temporal changes in nasopharyngeal carriage of Streptococcus pneumoniaeserotype 1 genotypes in healthy Gambians before and after the 7-valent pneumococcal conjugate vaccine. PeerJ PrePrints, Volume 3 . Article number e903. doi:10.7717/peerj.903

Eikenes, Åsmund H., Malerød, Lene, Christensen, Anette Lie, Steen, Chloé B., Mathieu, Juliette, Nezis, Ioannis P., Liestøl, Knut, Huynh, Jean-René, Stenmark, H. and Haglund, Kaisa (2015) ALIX and ESCRT-III coordinately control cytokinetic abscission during germline stem cell division in vivo. PLoS Genetics, Volume 11 (Number 1). pp. 1-7. Article number e1004904. doi:10.1371/journal.pgen.1004904

Elashry, Abdelnaser, Okumoto, Sakiko, Siddique, Shahid, Koch, Wolfgang, Kreil, David and Bohlmann, Holger (2013) The AAP gene family for amino acid permeases contributes to development of the cyst nematode Heterodera schachtii in roots of Arabidopsis. Plant Physiology and Biochemistry, Volume 70 . pp. 379-386. doi:10.1016/j.plaphy.2013.05.016

Elliott, Charles M., Stinner, Björn and Venkataraman, Chandrasekhar (2012) Modelling cell motility and chemotaxis with evolving surface finite elements. Journal of The Royal Society Interface, Volume 9 (Number 76). pp. 3027-3044. doi:10.1098/rsif.2012.0276

España, Mingrelia, Rasche, Frank, Kandeler, Ellen, Brune, Thomas, Rodriguez, Belkys, Bending, G. D. and Cadisch, G. (Georg) (2011) Assessing the effect of organic residue quality on active decomposing fungi in a tropical Vertisol using 15N-DNA stable isotope probing. Fungal Ecology, Vol.4 (No.1). pp. 115-119. doi:10.1016/j.funeco.2010.09.005

Eyice, Özge and Schäfer, Hendrik (2016) Culture-dependent and culture-independent methods reveal diverse methylotrophic communities in terrestrial environments. Archives of Microbiology, 198 (1). pp. 17-26. doi:10.1007/s00203-015-1160-x

Eyre, David W., Didelot, Xavier, Buckley, Anthony M., Freeman, Jane, Moura, Ines B., Crook, Derrick W., Peto, Tim E.A., Walker, A. Sarah, Wilcox, Mark H. and Dingle, Kate E. (2019) Clostridium difficile trehalose metabolism variants are common and not associated with adverse patient outcomes when variably present in the same lineage. EBioMedicine . doi:10.1016/j.ebiom.2019.04.038 (In Press)

Farrant, Gregory K., Doré, Hugo, Cornejo-Castillo, Francisco M., Partensky, Frédéric, Ratin, Morgane, Ostrowski, Martin, Pitt, Frances D., Wincker, Patrick, Scanlan, David J. , Iudicone, Daniele, Acinas, Silvia G. and Garczarek, Laurence (2016) Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 113 (24). E3365-E3374. doi:10.1073/pnas.1524865113

Farrell, Frederick, Gralka, Matti, Hallatschek, Oskar and Waclaw, Bartlomiej (2017) Mechanical interactions in bacterial colonies and the surfing probability of beneficial mutations. Journal of the Royal Society, Interface, 14 (131). 20170073. doi:10.1098/rsif.2017.0073

Frankel, Gad, Shaw, Robert K., Pink, David, Berger, Cedric N. and Hand, Paul (2009) Fresh produce as a potential vector for bacterial human pathogens. Microbial Biotechnology, Vol.2 (No.6). pp. 595-597. doi:10.1111/j.1751-7915.2009.00137.x

Freeman, Zoë N., Dorus, Steve and Waterfield, Nicholas R. (2013) The KdpD/KdpE two-component system : integrating K+ homeostasis and virulence. PLoS Pathogens, Volume 9 (Number 3). Article number e1003201. doi:10.1371/journal.ppat.1003201

Fullam, Elizabeth, Pojer, Florence, Bergfors, Terese, Jones, T. Alwyn and Cole, Stewart T. (2012) Structure and function of the transketolase from Mycobacterium tuberculosis and comparison with the human enzyme. Open Biology, Volume 2 (110026). Article number 110026. doi:10.1098/rsob.110026

Fullam, Elizabeth, Prokes, Ivan, Fütterer, Klaus and Besra, Gurdyal S. (2016) Structural and functional analysis of the solute-binding protein UspC from Mycobacterium tuberculosis that is specific for amino sugars. Open Biology (6). doi:10.1098/rsob.160105

Galley, Nicola F., O'Reilly, Amy M. and Roper, David I. (2014) Prospects for novel inhibitors of peptidoglycan transglycosylase. Bioorganic Chemistry, Volume 55 (Number 100). pp. 16-26. doi:10.1016/j.bioorg.2014.05.007

Garcia De Gonzalo, C. V., Denham, Emma, Mars, Ruben A. T., Stülke, J., Donk, W. A. van der and Dijl, Jan Maarten van (2015) The phosphoenolpyruvate : sugar phosphotransferase system is involved in sensitivity to the glucosylated bacteriocin sublancin. Antimicrobial agents and chemotherapy, 59 (11). pp. 6844-6854. doi:10.1128/AAC.01519-15

García-Rodríguez, Luis J., De Piccoli, Giacomo, Marchesi, Vanessa, Jones, Richard C., Edmondson, Ricky D. and Labib, Karim (2015) A conserved Polϵ binding module in Ctf18-RFC is required for S-phase checkpoint activation downstream of Mec1. Nucleic Acids Research, 43 (18). pp. 8830-8838. doi:10.1093/nar/gkv799

Gaze, William H., O'Neill, Colette, Wellington, E. M. H. and Hawkey, P. M. (2008) Antibiotic resistance in the environment, with particular reference to MRSA. Advances in Applied Microbiology, Vol.63 . pp. 249-280. doi:10.1016/S0065-2164(07)00007-X

(2014) Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors. Molecular Cell, Volume 53 (Number 3). pp. 369-379. doi:10.1016/j.molcel.2013.12.020

Girija, Umakhanth Venkatraman, Furze, Christopher M., Gingras, Alexandre R., Yoshizaki, Takayuki, Ohtani, Katsuki, Marshall, Jamie E., Wallis, A. Katrine, Schwaeble, Wilhelm J., El-Mezgueldi, Mohammed, Mitchell, Daniel A., Moody, Peter C. E., Wakamiya, Nobutaka and Wallis, Russell (2015) Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome. BMC biology, 13 (1). pp. 1-13. 27. doi:10.1186/s12915-015-0136-2

Gog, Julia R., Pellis, Lorenzo, Wood, James L. N., McLean, Angela R., Arinaminpathy, Nimalan and Lloyd-Smith, James O. (2015) Seven challenges in modelling pathogen dynamics within-host and across scales. Epidemics, Volume 10 . pp. 45-48. doi:10.1016/j.epidem.2014.09.009

(2014) Crossing the interspecies barrier : opening the door to zoonotic pathogens. PLoS Pathogens, Volume 10 (Number 6). Article number e1004129. doi:10.1371/journal.ppat.1004129

Grafke, Tobias, Cates, M. E. (Michael E.) and Vanden-Eijnden, Eric (2017) Spatiotemporal self-organization of fluctuating bacterial colonies. Physical Review Letters, 119 (18). 188003 . doi:10.1103/PhysRevLett.119.188003

Graham, Neil S., Broadley, Martin R., Hammond, John P., White, Philip J. and May, Sean T. (2007) Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection. BMC Genomics, Vol.8 (No.344). doi:10.1186/1471-2164-8-344

Granato, Elisa T., Harrison, Freya, Kümmerli, Rolf and Ross-Gillespie, Adin (2016) Do bacterial “virulence factors” always increase virulence? A meta-analysis of pyoverdine production in pseudomonas aeruginosa as a test case. Frontiers in Microbiology, 7 . doi:10.3389/fmicb.2016.01952

Greene, Nicholas P., Kaplan, Elise, Crow, Allister and Koronakis, Vassilis (2018) Antibiotic resistance mediated by the MacB ABC transporter family : a structural and functional perspective. Frontiers in Microbiology, 9 . 950. doi:10.3389/fmicb.2018.00950

Gregor, Ivan, Dröge, Johannes, Schirmer, Melanie, Quince, Christopher and McHardy, Alice C. (2016) PhyloPythiaS+ : a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes. PeerJ, 4 . e1603. doi:10.7717/peerj.1603

Grob, Carolina, Jardillier, Ludwig, Hartmann, Manuela, Ostrowski, Martin, Zubkov, Mikhail V. and Scanlan, David J. (2015) Cell-specific CO2 fixation rates of two distinct groups of plastidic protists in the Atlantic Ocean remain unchanged after nutrient addition. Environmental Microbiology Reports, Volume 7 (Number 2). pp. 211-218. doi:10.1111/1758-2229.12228

Grob, Carolina, Taubert, Martin, Howat, Alexandra M., Burns, Oliver J., Dixon, Joanna L., Richnow, Hans H., Jehmlich, Nico, von Bergen, Martin, Chen, Yin and Murrell, J. C. (J. Colin) (2015) Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph. Environmental Microbiology, 17 (10). pp. 4007-4018. doi:10.1111/1462-2920.12935

Grosskinsky, Stefan, Marahrens, Daniel and Stevens, Angela (2017) A hydrodynamic limit for chemotaxis in a given heterogeneous environment. Vietnam Journal of Mathematics, 45 (1-2). pp. 127-152. doi:10.1007/s10013-016-0209-8

Großkopf, Tobias, Consuegra, Jessika, Gaffé, Joël, Willison, John C., Lenski, Richard E., Soyer, Orkun S. and Schneider, Dominique (2016) Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment. BMC Evolutionary Biology, 16 (1). doi:10.1186/s12862-016-0733-x

Großkopf, Tobias and Soyer, Orkun S. (2016) Microbial diversity arising from thermodynamic constraints. The ISME Journal, 10 . pp. 2725-2733. doi:10.1038/ismej.2016.49

Großkopf, Tobias and Soyer, Orkun S. (2014) Synthetic microbial communities. Current Opinion in Microbiology, Volume 18 . pp. 72-77. doi:10.1016/j.mib.2014.02.002

Großkopf, Tobias, Zenobi, Simone, Alston, Mark, Folkes, Leighton, Swarbreck, David and Soyer, Orkun S. (2016) A stable genetic polymorphism underpinning microbial syntrophy. The ISME Journal, 10 . pp. 2844-2853. doi:10.1038/ismej.2016.80

Grébert, Théophile, Doré, Hugo, Partensky, Frédéric, Farrant, Gregory K., Boss, Emmanuel S., Picheral, Marc, Guidi, Lionel, Pesant, Stéphane, Scanlan, David J. , Wincker, Patrick, Acinas, Silvia G., Kehoe, David M. and Garczarek, Laurence (2018) Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 115 (9). E2010-E2019. 201717069. doi:10.1073/pnas.1717069115

Guetzoyan, Lucie J., Spooner, Robert A. , Lord, Mike, Roberts, L. M. (Lynne M.) and Clarkson, Guy J. (2010) Simple oxidation of pyrimidinylhydrazones to triazolopyrimidines and their inhibition of Shiga toxin trafficking. European Journal of Medicinal Chemistry, Vol.45 (No.1). pp. 275-283. doi:10.1016/j.ejmech.2009.10.007

Gutierrez-Caballero, Cristina, Burgess, Selena G., Bayliss, Richard and Royle, Stephen J. (2015) TACC3-ch-TOG track the growing tips of microtubules independently of clathrin and Aurora-A phosphorylation. Biology Open, 4 . pp. 170-179. doi:10.1242/bio.201410843

Guy, Collette S., Gibson, Matthew I. and Fullam, Elizabeth (2019) Targeting extracellular glycans : tuning multimeric boronic acids for pathogen-selective killing of Mycobacterium tuberculosis. Chemical Science . doi:10.1039/C9SC00415G (In Press)

Gyoergy, Attila, Roblek, Marko, Ratheesh, Aparna, Valoskova, Katarina, Belyaeva, Vera, Wachner, Stephanie, Matsubayashi, Yutaka, Sánchez-Sánchez, Besaiz J., Stramer, Brian and Siekhaus, Daria E. (2018) Tools allowing independent visualization and genetic manipulation of Drosophila melanogaster macrophages and surrounding tissues. G3: Genes, Genomes, Genetics, 8 (3). g3.300452.2017. doi:10.1534/g3.117.300452

Gómez-Pereira, Paola R., Hartmann, Manuela, Grob, Carolina, Tarran, Glen A., Martin, Adrian P., Fuchs, Bernhard M., Scanlan, David J. and Zubkov, Mikhail V. (2013) Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre. The ISME Journal, Vol.7 (No.3). pp. 603-614. doi:10.1038/ismej.2012.126

Hadlington, Jane L., Santoro, Aniello, Nuttall, James, Denecke, J. (Jurgen), Ma, Julian K.-C., Vitale, A. (Alessandro) and Frigerio, Lorenzo (2003) The c-terminal extension of a hybrid immunoglobulin A/G heavy chain is responsible for its Golgi-mediated sorting to the vacuole. Molecular Biology of the Cell, Vol.14 (No.6). pp. 2592-2602. doi:10.1091/mbc.E02-11-0771

(2018) Antibiotics and activity spaces: protocol of an exploratory study of behaviour, marginalisation and knowledge diffusion. BMJ Global Health, 3 . e000621. doi:10.1136/bmjgh-2017-000621

Haenssgen, Marco Johannes, Xayavong, Thipphaphone, Charoenboon, Nutcha, Warapikuptanun, Penporn and Khine Zaw, Yuzana (2018) The consequences of AMR education and awareness raising : outputs, outcomes, and behavioural impacts of an antibiotic-related educational activity in Lao PDR. Antibiotics, 7 (4). 95. doi:10.3390/antibiotics7040095

Haering, Christian H., Farcas, Ana-Maria, Arumugam, Prakash, Metson, Jean and Nasmyth, Kim (2008) The cohesin ring concatenates sister DNA molecules. Nature, Vol.454 . pp. 297-301. doi:10.1038/nature07098

Halachev, Mihail R., Chan, Jacqueline, Constantinidou, Chrystala, Cumley, Nicola, Bradley, Craig, Smith-Banks, Matthew, Oppenheim, Beryl and Pallen, Mark J. (2014) Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumannii in Birmingham, England. Genome Medicine, Volume 6 (Number 11). pp. 1-13. Article number 70. doi:10.1186/s13073-014-0070-x

Halachev, Mihail R., Loman, Nicholas J. and Pallen, Mark J. (2011) Calculating orthologs in bacteria and archaea : a divide and conquer approach. PLoS One, Volume 6 (Number 12). Article number e28388. doi:10.1371/journal.pone.0028388

Hall, Sharon A., Allen, Rebecca L., Baumber, Rachel E., Baxter, Laura, Fisher, Kate, Bittner-Eddy , Peter D., Rose, Laura E., Holub, E. B. and Beynon, Jim (2009) Maintenance of genetic variation in plants and pathogens involves complex networks of gene-for-gene interactions. Molecular Plant Pathology, Vol.10 (No.4). pp. 449-457. doi:10.1111/j.1364-3703.2009.00544.x

Hammond, John P., Broadley, Martin R., Craigon, David J., Higgins, Janet, Emmerson, Zoe F., Townsend, Henrik J., White, Philip J. and May, Sean T. (2005) Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species. Plant Methods, Vol.1 (No.10). doi:10.1186/1746-4811-1-10

Hancock, Penelope A. and Godfray, H. Charles J. (2012) Modelling the spread of Wolbachia in spatially heterogeneous environments. Journal of The Royal Society Interface, Vol.9 (No.76). pp. 3045-3054. doi:10.1098/rsif.2012.0253

Hardy, K. (Katherine), Price, Charlotte L, Szczepura, Ala, Gossain, Savita, Davies, Ruth, Stallard, Nigel, Shabir, Sahida, McMurray, Claire, Bradbury, Andrew and Hawkey, P. M. (Peter M.) (2009) Reduction in the rate of methicillin-resistant Staphylococcus aureus acquisition in surgical wards by rapid screening for colonization : a prospective, cross-over study. Clinical Microbiology and Infection, Vol.16 (No.4). pp. 333-339. doi:10.1111/j.1469-0691.2009.02899.x

Hargreaves, Katherine R., Otieno, James R., Thanki, Anisha, Blades, Matthew J., Millard, Andrew D., Browne, Hilary P., Lawley, Trevor D. and Clokie, Martha R. J. (2015) As clear as mud? Determining the diversity and prevalence of prophages in the draft genomes of estuarine isolates of Clostridium difficile. Genome Biology and Evolution, Volume 7 (Number 7). pp. 1842-1855. doi:10.1093/gbe/evv094

Harrison, Andrew B., Binder, Hans, Buhot, Arnaud , Burden, Conrad John, Carlon, Enrico, Gibas, Cynthia, Gamble, Lara J., Halperin, Avraham, Hooyberghs, Jef, Kreil, David, Levicky, Rastislav, Noble, Peter A., Ott, Albrecht, Pettitt, B. Montgomery, Tautz, Diethard and Pozhitkov, Alexander E. (2013) Physico-chemical foundations underpinning microarray and next-generation sequencing experiments. Nucleic Acids Research, Volume 41 (Number 5). pp. 2779-2796. doi:10.1093/nar/gks1358

Harrison, Freya and Buckling, Angus (2011) Wider access to genotypic space facilitates loss of cooperation in a bacterial mutator. PLoS One, 6 (2). e17254. doi:10.1371/journal.pone.0017254

Harrison, Freya and Diggle, Stephen P. (2016) An ex vivo lung model to study bronchioles infected with Pseudomonas aeruginosa biofilms. Microbiology, 162 . pp. 1755-1760. doi:10.1099/mic.0.000352

Harrison, Freya, McNally, Alan, da Silva, Ana C., Heeb, Stephan and Diggle, Stephen P. (2017) Optimised chronic infection models demonstrate that siderophore ‘cheating’ in Pseudomonas aeruginosa is context specific. The ISME Journal, 11 . pp. 2492-2509. doi:10.1038/ismej.2017.103

Harrison, Freya, Muruli, Aneesha, Higgins, Steven and Diggle, Stephen P. (2014) Development of an ex vivo porcine lung model for studying growth, virulence, and signaling of pseudomonas aeruginosa. Infection and Immunity, 82 (8). pp. 3312-3323. doi:10.1128/IAI.01554-14

Hartlieb, Matthias, Williams, E. G., Kuroki, Agnès, Perrier, Sébastien and Locock, K. E. (2017) Antimicrobial polymers : mimicking amino acid functionality, sequence control and three-dimensional structure of host-defense peptides. Current Medicinal Chemistry, 24 (19). pp. 2115-2140. doi:10.2174/0929867324666170116122322

Hartmann, Manuela, Grob, Carolina, Tarran, Glen A., Martin, Adrian P., Burkill, Peter H., Scanlan, David J. and Zubkov, Mikhail V. (2012) Mixotrophic basis of Atlantic oligotrophic ecosystems. Proceedings of the National Academy of Sciences, Volume 109 (Number 15). pp. 5756-5760. doi:10.1073/pnas.1118179109

Hasan, Muhammad, Fayter, Alice E. R. and Gibson, Matthew I. (2018) Ice recrystallization inhibiting polymers enable glycerol-free cryopreservation of microorganisms. Biomacromolecules . doi:10.1021/acs.biomac.8b00660 (In Press)

Heal, Jack W., Wells, Stephen A., Blindauer, Claudia A., Freedman, R. B. and Römer, Rudolf A. (2015) Characterization of folding cores in the cyclophilin A-cyclosporin A complex. Biophysical Journal, Volume 108 (Number 7). pp. 1739-1746. doi:10.1016/j.bpj.2015.02.017

Heather, Zoe, Holden, Matthew T. G., Steward, Karen F., Parkhill, Julian, Song, Lijiang, Challis, Gregory L., Robinson, C. (Carl), Davis-Poynter, Nicholas and Waller, Andrew S. (2008) A novel streptococcal integrative conjugative element involved in iron acquisition. Molecular Microbiology, Volume 70 (Number 5). pp. 1274-1292. doi:10.1111/j.1365-2958.2008.06481.x

Helliwell, Katherine Emma, Lawrence, Andrew David, Holzer, Andre, Kudahl, Johan, Sasso, Severin, Kräutler, Bernhard , Scanlan, David J. , Warren , Martin James and Smith, Alison Gail (2016) Cyanobacteria and eukaryotic algae use different chemical variants of vitamin B12. Current Biology, 26 (8). pp. 999-1008. doi:10.1016/j.cub.2016.02.041

Hellyer, Thomas P., Anderson, Niall H., Parker, Jennie, Dark, Paul, Van Den Broeck, Tina, Singh, Suveer, McMullan, Ronan, Agus, Ashley M., Emerson, Lydia M., Blackwood, Bronagh, Gossain, Savita, Walsh, Tim S., Perkins, Gavin D., Conway Morris, Andrew, McAuley, Daniel F. and Simpson, A. John (2016) Effectiveness of biomarker-based exclusion of ventilator-acquired pneumonia to reduce antibiotic use (VAPrapid-2) : study protocol for a randomised controlled trial. Trials, 17 (1). doi:10.1186/s13063-016-1442-x

Hellyer, Thomas P., Anderson, Niall H., Parker, Jennie, Dark, Paul, Van Den Broeck, Tina, Singh, Suveer, McMullan, Ronan, Agus, Ashley M., Emerson, Lydia M., Blackwood, Bronagh, Gossain, Savita, Walsh, Tim S., Perkins, Gavin D., Morris, Andrew Conway, McAuley, Daniel F. and Simpson, A. John (2016) Erratum to : ‘Effectiveness of biomarker-based exclusion of ventilator-acquired pneumonia to reduce antibiotic use (VAPrapid-2) : study protocol for a randomised controlled trial’. Trials, 17 (1). doi:10.1186/s13063-016-1594-8

Hemsley, Claudia M., Luo, Jamie X., Andreae, Clio A., Butler, Clive S., Soyer, Orkun S. and Titball, Richard W. (2014) Bacterial drug tolerance under clinical conditions is governed by anaerobic adaptation but not anaerobic respiration. Antimicrobial Agents and Chemotherapy, Volume 58 (Number 10). pp. 5775-5783. doi:10.1128/AAC.02793-14

Heneghan, Mary N., Porta, Claudine, Zhang, Cunjin, Burton, Kerry S., Challen, Michael P., Bailey, Andy M. and Foster, Gary D. (2009) Characterization of serine proteinase expression in agaricus bisporus and coprinopsis cinerea by using green fluorescent protein and the A. bisporus SPR1 Promoter. Applied and Environmental Microbiology, Vol.75 (No.3). pp. 792-801. doi:10.1128/AEM.01897-08

Hill, Steven M. (Mark), Neve, Richard M., Bayani, Nora, Kuo, Wen-Lin, Ziyad, Safiyyah, Spellman, Paul T., Gray, Joe W. and Mukherjee, Sach (2012) Integrating biological knowledge into variable selection : an empirical Bayes approach with an application in cancer biology. BMC Bioinformatics, Volume 13 (Number 1). Article no. 94. doi:10.1186/1471-2105-13-94

Hilton, Sally, Bennett, Amanda J., Keane, Gary, Bending, G. D., Chandler, David, Stobart, Ron and Mills, P. R. (2013) Impact of shortened crop rotation of oilseed rape on soil and rhizosphere microbial diversity in relation to yield decline. PLoS One, Volume 8 (Number 4). e59859. doi:10.1371/journal.pone.0059859

(2009) Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. PLOS One, Vol.4 (No.7). doi:10.1371/journal.pone.0006072

Holmes, Antony, Kalvala, Sara and Whitworth, David E. (2010) Spatial simulations of myxobacterial development. PLoS Computational Biology, Vol.6 (No.2). e1000686. doi:10.1371/journal.pcbi.1000686

Holmes, Ian, Harris, Keith and Quince, Christopher (2012) Dirichlet multinomial mixtures : generative models for microbial metagenomics. PLoS One, Volume 7 (Number 2). Article number e30126. doi:10.1371/journal.pone.0030126

House, Thomas A. (2014) Epidemiological dynamics of Ebola outbreaks. eLife, Volume 3 . doi:10.7554/eLife.03908

Howat, Alexandra M., Vollmers, John, Taubert, Martin, Grob, Carolina, Dixon, Joanna L., Todd, Jonathan, Chen, Yin, Kaster, Anne-Kristin and Murrell, J. C. (J. Colin) (2018) Comparative genomics and mutational analysis reveals a novel XoxF-utilising methylotroph in the Roseobacter group isolated from the marine environment. Frontiers in Microbiology, 9 . 766. doi:10.3389/fmicb.2018.00766

Hrast, Martina, Jukič, Marko, Patin, Delphine, Tod, Julie, Dowson, Christopher G., Roper, David I., Barreteau, Hélène and Gobec, Stanislav (2018) In silico identification, synthesis and biological evaluation of novel tetrazole inhibitors of MurB. Chemical Biology & Drug Design, 91 (6). pp. 1101-1112. doi:10.1111/cbdd.13172

Huang, Junqi, Chew, Ting Gang, Gu, Ying, Palani, Saravanan, Kamnev, Anton, Martin, Douglas S., Carter, Nicholas J., Cross, R. A., Oliferenko, Snezhana and Balasubramanian, Mohan K. (2016) Curvature-induced expulsion of actomyosin bundles during cytokinetic ring contraction. eLife, 5 . doi:10.7554/eLife.21383

Hulin, Michelle T., Armitage, Andrew D., Vicente, Joana G., Holub, E. B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). The New Phytologist, 291 (2). pp. 672-696. doi:10.1111/nph.15182

Hunter, Paul J., Teakle, Graham R. and Bending, G. D. (2014) Root traits and microbial community interactions in relation to phosphorus availability and acquisition, with particular reference to Brassica. Frontiers in Plant Science, Volume 5 . doi:10.3389/fpls.2014.00027

Hänsch, Stephanie, Cilli, Elisabetta, Catalano, Giulioilda, Gruppioni, Giorgio, Bianucci, Raffaella, Stenseth, Nils C., Bramanti, Barbara and Pallen, Mark J. (2015) The pla gene, encoding plasminogen activator, is not specific to Yersinia pestis. BMC Research Notes, 8 (1). pp. 1-3. doi:10.1186/s13104-015-1525-x

Inahashi, Yuki, Zhou, Shanshan, Bibb, Maureen J., Song, Lijiang, Al-Bassam, Mahmoud M., Bibb, Mervyn J. and Challis, Gregory L. (2017) Watasemycin biosynthesis in Streptomyces venezuelae : thiazoline C-methylation by a type B radical-SAM methylase homologue. Chemical Science, 8 (4). pp. 2823-2831. doi:10.1039/c6sc03533g

Ingham, Victoria A., Jones, Christopher M., Pignatelli, Patricia, Balabanidou, Vasileia, Vontas, John, Wagstaff, Simon C., Moore, Jonathan D. and Ranson, Hilary (2014) Dissecting the organ specificity of insecticide resistance candidate genes in Anopheles gambiae : known and novel candidate genes. BMC Genomics, Volume 15 (Number 1). Article number 1018. doi:10.1186/1471-2164-15-1018

Jadhav, Vaibhav, Hackl, Matthias, Druz, Aliaksandr, Shridhar, Smriti, Chung, Cheng-Yu, Heffner, Kelley M., Kreil, David, Betenbaugh, Mike, Shiloach, Joseph, Barron, Niall, Grillari, Johannes and Borth, Nicole (2013) CHO microRNA engineering is growing up : recent successes and future challenges. Biotechnology Advances, Volume 31 (Number 8). pp. 1501-1513. doi:10.1016/j.biotechadv.2013.07.007

Jameson, Eleanor, Doxey, Andrew C., Airs, Ruth, Purdy, Kevin J., Murrell, J. C. (J. Colin) and Chen, Yin (2016) Metagenomic data-mining reveals contrasting microbial populations responsible for trimethylamine formation in human gut and marine ecosystems. Microbial Genomics, 2 (9). doi:10.1099/mgen.0.000080

Jameson, Eleanor, Fu, Tiantian, Brown, Ian R., Paszkiewicz, Konrad, Purdy, Kevin J., Frank, Stefanie and Chen, Yin (2015) Anaerobic choline metabolism in microcompartments promotes growth and swarming of Proteus mirabilis. Environmental Microbiology, 18 . pp. 2886-2898. doi:10.1111/1462-2920.13059

Jameson, Eleanor, Quareshy, Mussa and Chen, Yin (2018) Methodological considerations for the identification of choline and carnitine-degrading bacteria in the gut. Methods, 149 . pp. 42-48. doi:10.1016/j.ymeth.2018.03.012

Jameson, Eleanor, Stephenson, Jason, Jones, Helen J., Millard, Andrew D., Kaster, K., Purdy, Kevin J., Airs, R., Murrell, J. C. (J. Colin) and Chen, Yin (2019) Deltaproteobacteria (Pelobacter) and Methanococcoides are responsible for choline-dependent methanogenesis in a coastal saltmarsh sediment. ISME Journal, 13 (2). pp. 277-289. doi:10.1038/s41396-018-0269-8

Jannat, Shopan, Mou, Haipeng, Zhang, Lili, Zhang, Changtong, Ma, Weiwei, Walsh, John A., Hu, Zhongyuan, Yang, Jinghua and Zhang, Mingfang (2017) Eukaryotic translation initiation factor 2B-beta (eIF2B β), a new class of plant virus resistance gene. The Plant Journal, 90 (5). pp. 929-940. doi:10.1111/tpj.13519

Jayal, Ambikesh, Johns, Benjamin E., Purdy, Kevin J. and Maddocks, Sarah E. (2017) Draft genome sequence of Pseudomonas aeruginosa ATCC 9027, originally isolated from an outer ear infection. Genome Announcements, 5 (48). e01397-17. doi:10.1128/genomeA.01397-17

Jeanneret, Raphaël, Pushkin, Dmitri O., Kantsler, Vasily and Polin, Marco (2016) Entrainment dominates the interaction of microalgae with micron-sized objects. Nature Communications, 7 . 12518. doi:10.1038/ncomms12518

Jiang, Feng, Wang, Xia, Wang, Bei, Chen, Lihong, Zhao, Zhendong, Waterfield, Nicholas R., Yang, Guowei and Jin, Qi (2016) The pseudomonas aeruginosa Type VI secretion PGAP1-like effector induces host autophagy by activating endoplasmic reticulum stress. Cell Reports, 16 (6). pp. 1502-1509. doi:10.1016/j.celrep.2016.07.012

Jones, C. W. (Christopher W.), Wang, J. C., Briehl, R. W. and Taylor, Matthew S. (2005) Measuring forces between protein fibers by microscopy. Biophysical Journal, Vol.88 (No.4). pp. 2433-2441. doi:10.1529/biophysj.104.050856

Jones, Mathew W., Mantovani, Giuseppe, Blindauer, Claudia A., Ryan, Sinead M., Wang, Xuexuan, Brayden, David J. and Haddleton, David M. (2012) Direct peptide bioconjugation/PEGylation at tyrosine with linear and branched polymeric diazonium salts. Journal of the American Chemical Society, 134 (17). pp. 7406-7413. doi:10.1021/ja211855q

Jordan, Robert W., Smith, Nicholas A., Saithna, Adnan, Sprowson, Andrew P. and Foguet, Pedro (2014) Sensitivities, specificities, and predictive values of microbiological culture techniques for the diagnosis of prosthetic joint infection. BioMed Research International, Volume 2014 . pp. 1-5. Article number 180416. doi:10.1155/2014/180416

Joubert, Fanny, Yeo, R. Paul, Sharples, Gary J., Musa, Osama M., Hodgson, David R. W. and Cameron, Neil R. (2015) Preparation of an antibacterial poly(ionic liquid) graft copolymer of hydroxyethyl cellulose. Biomacromolecules, 16 (12). pp. 3970-3979. doi:10.1021/acs.biomac.5b01300

Kadir, Tuty Asmawaty Abdul, Mannan, Ahmad A., Kierzek, Andrzej M., McFadden, Johnjoe and Shimizu, Kazuyuki (2010) Modeling and simulation of the main metabolism in Escherichia coli and its several single-gene knockout mutants with experimental verification. Microbial Cell Factories, 9 . 88. doi:10.1186/1475-2859-9-88

Kamau, E., Onyango, C. O., Otieno, G. P., Kiyuka, P. K., Agoti, C. N., Medley, G. F., Cane, P. A., Nokes, D. James and Munywoki, P. K. (2019) An intensive, active surveillance reveals continuous invasion and high diversity of rhinovirus in households. Journal of Infectious Diseases, 219 (7). pp. 1049-1057. doi:10.1093/infdis/jiy621

Kaplan, Elise, Greene, Nicholas P., Crow, Allister and Koronakis, Vassilis (2018) Insights into bacterial lipoprotein trafficking from a structure of LolA bound to the LolC periplasmic domain. Proceedings of the National Academy of Sciences of the United States of America, 115 (31). E7389-E7397. 201806822. doi:10.1073/pnas.1806822115

Karikari, Thomas K. and Aleksic, Jelena (2015) Neurogenomics : an opportunity to integrate neuroscience, genomics and bioinformatics research in Africa. Applied & translational genomics, 5 . pp. 3-10. doi:10.1016/j.atg.2015.06.004

Karikari, Thomas K. and Quansah, Emmanuel (2015) Neurogenomics : challenges and opportunities for Ghana. Applied & translational genomics, 5 . pp. 11-14. doi:10.1016/j.atg.2015.06.002

Karpinets, Tatiana V. , Greenwood , Duncan J., Sams, Carl E. and Ammons, John T. (2006) RNA:protein ratio of the unicellular organism as a characteristic of phosphorous and nitrogen stoichiometry and of the cellular requirement of ribosomes for protein synthesis. BMC Biology, Vol.4 (No.30). doi:10.1186/1741-7007-4-30

Kassaar, Omar, Schwarz-Linek, Ulrich, Blindauer, Claudia A. and Stewart, Alan J. (2015) Plasma free fatty acid levels influence Zn2+-dependent histidine-rich glycoprotein-heparin interactions via an allosteric switch on serum albumin. Journal of Thrombosis and Haemostasis, 13 (1). pp. 101-110. doi:10.1111/jth.12771

Kaur, Amandeep, Hernandez Fernaud, Juan Ramon, Aguilo-Ferretjans, Maria del Mar, Wellington, E. M. H. and Christie-Oleza, Joseph Alexander (2017) 100 days of marine Synechococcus – Ruegeria pomeroyi interaction, a detailed analysis of the exoproteome. Environmental Microbiology, 20 (2). pp. 785-799. doi:10.1111/1462-2920.14012

Kaverina, Irina and Straube, Anne (2011) Regulation of cell migration by dynamic microtubules. Seminars in Cell & Developmental Biology, Volume 22 (Number 9). pp. 968-974. doi:10.1016/j.semcdb.2011.09.017

Kay, Gemma L., Sergeant, Martin J., Giuffra, Valentina, Bandiera, Pasquale, Milanese, Marco, Bramanti, Barbara, Bianucci, Raffaella and Pallen, Mark J. (2014) Recovery of a medieval Brucella melitensis genome using shotgun metagenomics. mBio, Volume 5 (Number 4). Article number e01337-14. doi:10.1128/mBio.01337-14

Kay, Gemma L., Sergeant, Martin J., Zhou, Zhemin, Chan, Jacqueline, Millard, Andrew D., Quick, Joshua, Szikossy, Ildikó, Pap, Ildikó, Spigelman, Mark, Loman, Nicholas J., Achtman, Mark, Donoghue, Helen D. and Pallen, Mark J. (2015) Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe. Nature Communications, Volume 6 . pp. 1-9. Article number 6717. doi:10.1038/ncomms7717

Keeling, Matthew James, Datta, Samik, Franklin, Daniel, Flatman, Ivor, Wattam, Andy, Brown, Mike and Budge, Giles E. (2017) Efficient use of sentinel sites : detection of invasive honeybee pests and diseases in the UK. Journal of The Royal Society Interface, 14 (129). 20160908. doi:10.1098/rsif.2016.0908

Kemen, Eric, Gardiner, Anastasia, Schultz-Larsen, Torsten, Kemen, Ariane C., Balmuth, Alexi L., Robert-Seilaniantz, Alexandre, Bailey, Kate, Holub, E. B., Studholme, David J., MacLean, Daniel and Jones, Jonathan D. G. (2011) Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana. PLoS Biology, Vol.9 (No.7). Article No. e1001094 . doi:10.1371/journal.pbio.1001094

Kendrick, Felicity, Evans, Neil D., Arnulf, Bertrand, Avet-Loiseau, Hervé, Decaux, Olivier, Dejoie, Thomas, Fouquet, Guillemette, Guidez, Stéphanie, Harel, Stéphanie, Hebraud, Benjamin, Javaugue, Vincent, Richez, Valentine, Schraen, Susanna, Touzeau, Cyrille, Moreau, Philippe, Leleu, Xavier, Harding, Stephen and Chappell, Michael J. (2017) Analysis of a compartmental model of endogenous immunoglobulin G metabolism with application to multiple myeloma. Frontiers in Physiology, 8 . 149. doi:10.3389/fphys.2017.00149

Kim, Dae-Wi, Thawng, Cung Nawl, Lee, Kihyun, Wellington, E. M. H. and Cha, Chang-Jun (2019) A novel sulfonamide resistance mechanism by two-component flavin-dependent monooxygenase system in sulfonamide-degrading actinobacteria. Environment International, 127 . pp. 206-215. doi:10.1016/j.envint.2019.03.046

King, Hayley C., Khera-Butler , Tanya, James, Phillip, Oakley, Brian B., Erenso, Girume, Aseffa, Abraham, Knight, Robert, Wellington, E. M. H. and Courtenay, Orin (2017) Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape. PLoS One, 12 (3). e0173811. doi:10.1371/journal.pone.0173811

Kiskinis, Evangelos, Chatzeli, Lemonia, Curry, Edward, Kaforou, Myrsini, Frontini, Andrea, Cinti, Saverio, Montana, Giovanni, Parker, Malcolm G. and Christian, Mark (2014) RIP140 represses the “Brown-in-White” adipocyte program including a futile cycle of triacyclglycerol breakdown and synthesis. Molecular Endocrinology, Volume 28 (Number 3). pp. 344-356. doi:10.1210/me.2013-1254

Konstantopoulou, Marina, Slator, Paddy J., Taylor, Charles R., Wellington, E. M. H., Allison, Gordon, Harper, Andrea L., Bancroft, Ian and Bugg, Timothy D. H. (2017) Variation in susceptibility to microbial lignin oxidation in a set of wheat straw cultivars : influence of genetic, seasonal and environmental factors. Nordic Pulp and Paper Research Journal, 32 (4). pp. 493-507.

Kothamachu, Varun B., Feliu, Elisenda, Cardelli, Luca and Soyer, Orkun S. (2015) Unlimited multistability and Boolean logic in microbial signalling. Journal of The Royal Society Interface, Volume 12 (Number 108). pp. 1-9. Article number 20150234. doi:10.1098/rsif.2015.0234

Kowalczyk, Agnieszka, Price, Oliver R., van der Gast, Christopher J., Finnegan, Christopher J., van Egmond, Roger A., Schäfer, Hendrik and Bending, G. D. (2016) Spatial and temporal variability in the potential of river water biofilms to degrade p-nitrophenol. Chemosphere, 164 . pp. 355-362. doi:10.1016/j.chemosphere.2016.08.095

Krašovec, Rok, Belavkin, Roman V., Aston, John A. D., Channon, Alastair, Aston, Elizabeth, Rash, Bharat M., Kadirvel, Manikandan, Forbes, Sarah and Knight, C. G. (Christopher G.) (2014) Mutation rate plasticity in rifampicin resistance depends on Escherichia coli cell–cell interactions. Nature Communications, Volume 5 . Article number 3742. doi:10.1038/ncomms4742

Kshirsagar, Meghana, Schleker, Sylvia, Carbonell, Jaime and Klein-Seetharaman, Judith (2015) Techniques for transferring host-pathogen protein interactions knowledge to new tasks. Frontiers in Microbiology, 6 . 36. doi:10.3389/fmicb.2015.00036

Kulick, Stefan, Moccia, Claudia, Didelot, Xavier, Falush, Daniel, Kraft, Christian and Suerbaum, Sebastian (2008) Mosaic DNA imports with interspersions of recipient sequence after natural transformation of Helicobacter pylori. PLOS One, Vol.3 (No.11). doi:10.1371/journal.pone.0003797

Kumari, Pooja and Sampath, Karuna (2015) cncRNAs : Bi-functional RNAs with protein coding and non-coding functions. Seminars in Cell & Developmental Biology, 47-48 . pp. 40-51. doi:10.1016/j.semcdb.2015.10.024

Kunz, Cornelia, Friede, Tim, Parsons, Nicholas R., Todd, Susan and Stallard, Nigel (2014) Data-driven treatment selection for seamless phase II/III trials incorporating early-outcome data. Pharmaceutical Statistics, Volume 13 (Number 4). pp. 238-246. doi:10.1002/pst.1619

Ladds, Graham, Zervou, Sevasti I., Vatish, Manu, Thornton, Steven and Davey, John (2009) Regulators of G protein signalling proteins in the human myometrium. European Journal of Pharmacology, Vol.610 (No.1-3). pp. 23-28. doi:10.1016/j.ejphar.2009.03.042

Laskaris, Paris, Sekine, Takuya and Wellington, E. M. H. (2012) Diversity analysis of Streptomycetes and associated phosphotranspherase genes in soil. PLoS ONE, Vol.7 (No.4). e35756. doi:10.1371/journal.pone.0035756

Latifi-Navid, Saeid, Ghorashi, Seyed Ali, Siavoshi, Farideh, Linz, Bodo, Massarrat, Sadegh, Khegay, Tanya, Salmanian, Ali-Hatef, Shayesteh, Ali Akbar, Masoodi, Mohsen, Ghanadi, Koroush, Ganji, Azita, Suerbaum, Sebastian, Achtman, Mark, Malekzadeh, Reza and Falush, Daniel (2010) Ethnic and geographic differentiation of helicobacter pylori within Iran. PLoS One, Volume 5 (Number 3). Article number e9645. doi:10.1371/journal.pone.0009645

Leptos, Kyriacos C., Wan, Kirsty Y., Polin, Marco, Tuval, Idan, Pesci, Adriana I. and Goldstein, Raymond E. (2013) Antiphase synchronization in a flagellar-dominance mutant of Chlamydomonas. Physical Review Letters, Volume 111 . Article number 158101. doi:10.1103/PhysRevLett.111.158101

Lepère, Cécile, Ostrowski, Martin, Hartmann, Manuela, Zubkov, Mikhail V. and Scanlan, David J. (2015) In situ associations between marine photosynthetic picoeukaryotes and potential parasites - a role for fungi? Environmental Microbiology Reports, 8 (4). pp. 445-451. doi:10.1111/1758-2229.12339

Lewsey, Mathew, Surette, Monique, Robertson, Fiona C. , Ziebell, Heiko, Choi, Sun Hee , Ryu, Ki Hyun , Canto, Tomas, Palukaitis, Peter, Payne, Tina, Walsh, John A. and Carr, John P. (2009) The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant - Microbe Interactions, Vol.22 (No.6). pp. 642-654. doi:10.1094/MPMI-22-6-0642

Li, Chun-Yang, Chen, Xiu-Lan, Zhang, Dian, Wang, Peng, Sheng, Qi, Peng, Ming, Xie, Bin-Bin, Qin, Qi-Long, Li, Ping-Yi, Zhang, Xi-Ying, Su, Hai-Nan, Song, Xiao-Yan, Shi, Mei, Zhou, Bai-Cheng, Xun, Lu-Ying, Chen, Yin and Zhang, Yu-Zhong (2017) Structural mechanism for bacterial oxidation of oceanic trimethylamine into trimethylamine N -oxide. Molecular Microbiology, 103 (6). pp. 992-1003. doi:10.1111/mmi.13605

Li, Shuyu, Spooner, Robert A. , Hampton, Randolph Y., Lord, Mike and Roberts, L. M. (Lynne M.) (2012) Cytosolic entry of Shiga-like toxin A chain from the yeast endoplasmic reticulum requires catalytically active Hrd1p. PLoS ONE, Vol.7 (No.7). e41119. doi:10.1371/journal.pone.0041119

Li, Xiao, Wang, Juan, Shi, Mingxin, Wang, Weishan, Corre, Christophe and Yang, Keqian (2017) Evidence for the formation of ScbR/ScbR2 heterodimers and identification of one of the regulatory targets in Streptomyces coelicolor. Applied Microbiology and Biotechnology, 101 (13). pp. 5333-5340.

Lidbury, Ian, Kimberley, George, Scanlan, David J., Murrell, J. C. (J. Colin) and Chen, Yin (2015) Comparative genomics and mutagenesis analyses of choline metabolism in the marine Roseobacter clade. Environmental Microbiology, 17 (12). pp. 5048-5062. doi:10.1111/1462-2920.12943

Lidbury, Ian, Mausz, Michaela A., Scanlan, David J. and Chen, Yin (2017) Identification of dimethylamine monooxygenase in marine bacteria reveals a metabolic bottleneck in the methylated amine degradation pathway. ISME Journal, 11 . pp. 1592-1601. doi:10.1038/ismej.2017.31

Lidbury, Ian, Murrell, J. C. (J. Colin) and Chen, Yin (2014) Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria. Proceedings of the National Academy of Sciences of the United States of America, Volume 111 (Number 7). pp. 2710-2715. doi:10.1073/pnas.1317834111

Lidbury, Ian, Murrell, J. C. (J. Colin) and Chen, Yin (2015) Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium : implications for marine carbon and nitrogen cycling. The ISME Journal, 9 . pp. 760-769. doi:10.1038/ismej.2014.149

Links, Matthew G., Holub, E. B., Jiang, Rays H. Y., Sharpe, Andrew G., Hegedus, Dwayne, Beynon, Elena, Sillito, Dean, Clarke, Wayne E., Uzuhashi, Shihomi and Borhan, Mohammad Hossein (2011) De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes. BMC Genomics, Vol.12 (No.1). Article No. 503. doi:10.1186/1471-2164-12-503

Liu, Di, Mannan, Ahmad A., Han, Yichao, Oyarzún, Diego A. and Zhang, Fuzhong (2018) Dynamic metabolic control : towards precision engineering of metabolism. Journal of Industrial Microbiology & Biotechnology . 9. doi:10.1007/s10295-018-2013-9 (In Press)

Liu, Yujie, Claydon, Rory, Polin, Marco and Brumley, Douglas R. (2018) Transitions in synchronization states of model cilia through basal-connection coupling. Journal of The Royal Society Interface, 15 (147). doi:10.1098/rsif.2018.0450

Lowery, Richard, Gibson, Matthew I., Thompson, Richard C. and Fullam, Elizabeth (2015) Deuterated carbohydrate probes as ‘label-free’ substrates for probing nutrient uptake in mycobacteria by nuclear reaction analysis. Chemical communications, 51 (23). pp. 4838-4841. doi:10.1039/c4cc09588j

Lysenko, Elena S., Clarke, Thomas B., Shchepetov, Mikhail, Ratner, Adam J., Roper, David I., Dowson, Christopher G. and Weiser, Jeffrey N. (2007) Nod1 signaling overcomes resistance of S. pneumoniae to opsonophagocytic killing. PL o S Pathogens , Vol.3 (No.8). pp. 1073-1081. doi:10.1371/journal.ppat.0030118

Lythgoe, Katrina A., Pellis, Lorenzo and Fraser, Christophe (2013) Is HIV short-sighted? Insights from a multistrain nested model. Evolution, Volume 67 (Number 10). pp. 2769-2782. doi:10.1111/evo.12166

Maddocks, Sarah Elizabeth, Johns, Benjamin, Purdy, Kevin J. and Tucker, Nicholas (2015) Phenotypic and genotypic characteristics of small colony variants and their role in chronic infection. Microbiology Insights . pp. 15-23. doi:10.4137/MBI.S25800

Magombedze, Gesham, Shiri, Tinevimbo, Eda, Shigetoshi and Stabel, Judy R. (2017) Inferring biomarkers for Mycobacterium avium subsp. paratuberculosis infection and disease progression in cattle using experimental data. Scientific Reports, 7 . 44765. doi:10.1038/srep44765

Mahenthiralingam, Eshwar, Baldwin, Adam, Drevinek, Pavel, Vanlaere, Elke, Vandamme, Peter, LiPuma, John J. and Dowson, Christopher G. (2006) Multilocus sequence typing breathes life into a microbial metagenome. PLoS One, Vol.1 (No.1). doi:10.1371/journal.pone.0000017

Malina, J., Scott, Peter and Brabec, V. (2015) Shape-selective recognition of DNA abasic sites by metallohelices : inhibition of human AP endonuclease 1. Nucleic acids research, 43 (11). pp. 5297-5306. doi:10.1093/nar/gkv438

Mannan, Ahmad A., Liu, Di, Zhang, Fuzhong and Oyarzún, Diego A. (2017) Fundamental design principles for transcription-factor-based metabolite biosensors. ACS Synthetic Biology, 6 (10). pp. 1851-1859. doi:10.1021/acssynbio.7b00172

Mannan, Ahmad A., Toya, Yoshihiro, Shimizu, Kazuyuki, McFadden, Johnjoe, Kierzek, Andrzej M. and Rocco, Andrea (2015) Integrating kinetic model of E. coli with genome scale metabolic fluxes overcomes its open system problem and reveals bistability in central metabolism. PLoS One, 10 (10). e0139507. doi:10.1371/journal.pone.0139507

Maric, M., Maculins, T., De Piccoli, Giacomo and Labib, K. (2014) Cdc48 and a ubiquitin ligase drive disassembly of the CMG helicase at the end of DNA replication. Science, 346 (6208). p. 1253596. doi:10.1126/science.1253596

Markovic, Danijela, Bari, Muhammad F., Lu, B., Vatish, Manu and Grammatopoulos, Dimitris (2013) Corticotropin-releasing hormone interacts with interleukin-1 to regulate prostaglandin H synthase-2 expression in human myometrium during pregnancy and labor. Journal of Clinical Endocrinology & Metabolism, Volume 98 (Number 7). pp. 2864-2875. doi:10.1210/jc.2013-1094

Mars, Ruben A. T., Nicolas, Pierre, Ciccolini, Mariano, Reilman, Ewoud, Reder, Alexander, Schaffer, Marc, Mäder, Ulrike, Völker, Uwe, Dijl, Jan Maarten van and Denham, Emma (2015) Small regulatory RNA-induced growth rate heterogeneity of Bacillus subtilis. PLoS Genetics, Volume 11 (Number 3). pp. 1-27. Article number e1005046. doi:10.1371/journal.pgen.1005046

Marsh, Andrew, Casey-Green, Katherine, Probert, Fay, Withall, David M., Mitchell, Daniel A., Dilly, Suzanne J., James, Sean G., Dimitri, W., Ladwa, Sweta R. L., Taylor, Paul C. and Singer, Donald R. J. (2016) Simvastatin sodium salt and fluvastatin interact with human gap junction gamma-3 protein. PLoS One, 11 (2). pp. 1-27. e0148266. doi:10.1371/journal.pone.0148266

Martin, Liam T., Gurnani, Pratik, Zhang, Junliang, Hartlieb, Matthias, Cameron, Neil R., Eissa, Ahmed M. and Perrier, Sébastien (2019) Polydimethylsiloxane-based giant glycosylated polymersomes with tunable bacterial affinity. Biomacromolecules, 20 (3). pp. 1297-1307. doi:10.1021/acs.biomac.8b01709

Marttinen, Pekka, Baldwin, Adam, Hanage, William P., Dowson, Christopher G. and Mahenthiralingam, Eshwar (2008) Bayesian modeling of recombination events in bacterial populations. BMC Bioinformatics, Vol.9 (No.421). doi:10.1186/1471-2105-9-421

Mary, Isabelle, Garczarek, Laurence, Tarran, Glen A. , Kolowrat, Christian , Terry, Matthew J. , Scanlan, David J. , Burkill, Peter H. and Zubkov, Mikhail V. (2008) Diel rhythmicity in amino acid uptake by Prochlorococcus. Environmental Microbiology, Vol.10 (No.8). pp. 2124-2131. doi:10.1111/j.1462-2920.2008.01633.x

Mathijssen, Arnold, Jeanneret, Raphaël and Polin, Marco (2018) Universal entrainment mechanism controls contact times with motile cells. Physical Review Fluids, 3 (3). 033103. doi:10.1103/PhysRevFluids.3.033103

McDonald, Sarah M., Sarno, Diana, Scanlan, David J. and Zingone, Adriana (2007) Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle. Aquatic Microbial Ecology, Volume 50 (Number 1). pp. 75-89. doi:10.3354/ame01148

McDowell, A. (Andrew), Barnard, E. (Emma), Nagy, I. (István), Gao, Anna, Tomida, Shuta, Li, Huiying, Eady, Anne, Cove, Jonathan, Nord, Carl Erik and Patrick, Sheila (2012) An expanded multilocus sequence typing scheme for propionibacterium acnes : investigation of 'pathogenic', 'commensal' and antibiotic resistant strains. PLoS ONE, Vol.7 (Vol.7). e41480. doi:10.1371/journal.pone.0041480

Meadows, John C. and Millar, Jonathan B. A. (2008) Latrunculin A delays anaphase onset in fission yeast by disrupting an ase1-independent pathway controlling mitotic spindle stability. Molecular Biology of the Cell, Vol.19 (No.9). pp. 3713-3723. doi:10.1091/mbc.E08-02-0164

Medema, Marnix H, Trefzer, Axel, Kovalchuk, Andriy, van den Berg, Marco, Müller, Ulrike, Heijne, Wilbert, Wu, Liang, Alam, Mohammad T., Ronning, Catherine M, Nierman, William C, Bovenberg, Roel A L, Breitling, Rainer and Takano, Eriko (2010) The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways. Genome Biology and Evolution, 2 . pp. 212-24. doi:doi: 10.1093/gbe/evq013

Mendum, Tom A., Newcombe, Jane, Mannan, Ahmad A., Kierzek, Andrzej M. and McFadden, Johnjoe (2011) Interrogation of global mutagenesis data with a genome scale model of Neisseria meningitidis to assess gene fitness in vitro and in sera. Genome Biology, 12 . R127. doi:10.1186/gb-2011-12-12-r127

Michalopoulou, Vassiliki A., Vicente, Joana G., Studholme, David J. and Sarris, Panagiotis F. (2018) Draft genome sequences of pathotype strains for three pathovars belonging to three Xanthomonas species. Microbiology Resource Announcements, 7 (12). e00923-18. doi:10.1128/MRA.00923-18

Michieletto, Davide, Marenduzzo, Davide and Orlandini, Enzo (2015) Is the kinetoplast DNA a percolating network of linked rings at its critical point? Physical Biology, Volume 12 (Number 3). pp. 1-8. 036001. doi:10.1088/1478-3975/12/3/036001

Michniewski, Slawomir, Redgwell, Tamsin, Grigonyte, Aurelija, Rihtman, Branko, Aguilo‐Ferretjans, Maria, Christie‐Oleza, Joseph, Jameson, Eleanor, Scanlan, David J. and Millard, Andrew D. (2019) Riding the wave of genomics to investigate aquatic coliphage diversity and activity. Environmental Microbiology . doi:10.1111/1462-2920.14590 (In Press)

Michniewski, Slawomir, Redgwell, Tamsin, Scanlan, David J. and Millard, Andrew D. (2017) Draft genome sequence of Bacteriophage vB_Eco_swan01. Genome Announcements, 5 (28). pp. 1-17. e00501. doi:10.1128/genomeA.00501-17

Millard, Andrew D., Hands-Portman, Ian and Zwirglmaier, Katrin (2014) Morphotypes of virus-like particles in two hydrothermal vent fields on the East Scotia Ridge, Antarctia. Bacteriophage, Volume 4 (Number 1). Article number e28732 . doi:10.4161/bact.28732

Millard, Andrew D. and Mann, Nicholas H. (2006) A temporal and spatial investigation of cyanophage abundance in the Gulf of Aqaba Red Sea. Journal of the Marine Biological Association of the United Kingdom, Vol.86 (No.3). pp. 507-515. doi:10.1017/S0025315406013415

Millard, Andrew D., Scanlan, David J., Gallagher, Connor, Marsh, Andrew and Taylor, Paul C. (2014) Unexpected evolutionary proximity of eukaryotic and cyanobacterial enzymes responsible for biosynthesis of retinoic acid and its oxidation. Molecular BioSystems, 10 (3). pp. 380-383. doi:10.1039/c3mb70447e

Mitchell, Daniel A., Zhang, Qiang , Voorhaar, Lenny, Haddleton, David M., Herath, Shan, Gleinich, Anne S., Randeva, Harpal S., Crispin, Max, Lehnert, Hendrik, Wallis, Russell, Patterson, Steven and Becer, C. Remzi (2017) Manipulation of cytokine secretion in human dendritic cells using glycopolymers with picomolar affinity for DC-SIGN. Chemical Science, 8 (10). pp. 6974-6980. doi:10.1039/c7sc01515a

Mohammed, Khadija Said, Kibinge, Nelson, Prins, Pjotr, Agoti, Charles N., Cotten, Matthew, Nokes, D. James, Brand, Samuel and Githinji, George (2018) Evaluating the performance of tools used to call minority variants from whole genome short-read data. Wellcome Open Research, 3 . 21. doi:10.12688/wellcomeopenres.13538.2

Moodley, Yoshan, Linz, Bodo, Bond, Robert P., Nieuwoudt, Martin, Soodyall, Himla, Schlebusch, Carina M., Bernhöft, Steffi, Hale, J. (James), Suerbaum, Sebastian, Mugisha, Lawrence, Van der Merwe, Schalk W. and Achtman, Mark (2012) Age of the association between Helicobacter pylori and man. PLoS Pathogens, Volume 8 (Number 5). Article number e1002693. doi:10.1371/journal.ppat.1002693

Mora-Santos, Maria, Hervas-Aguilar, Maria-America, Sewart, Katharina, Lancaster, Theresa C., Meadows, John C. and Millar, Jonathan B. A. (2016) Bub3-Bub1 binding to Spc7/KNL1 toggles the spindle checkpoint switch by licensing the interaction of Bub1 with Mad1-Mad2. Current Biology, 26 (19). pp. 2642-2650. doi:10.1016/j.cub.2016.07.040

Morelli, Giovanna, Didelot, Xavier, Kusecek, Barica, Schwarz, Sandra, Bahlawane, Christelle, Falush, Daniel, Suerbaum, Sebastian and Achtman, Mark (2010) Microevolution of Helicobacter pylori during prolonged infection of single hosts and within families. PL o S Genetics, Vol.6 (No.7). doi:10.1371/journal.pgen.1001036

(2010) Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nature Genetics, 42 (12). pp. 1140-1143. doi:10.1038/ng.705

Morgan, Ann W., Barrett , Jennifer H., Griffiths, Bridget, Subramanian, Deepak , Robinson, Jim I. , Keyte, Viki H., Ali, Manir, Jones, E. A. (Elizabeth A.), Old, R. W., Ponchel, Frederique , Boylston, Arthur W., Deva Situnayake, R, Markham, Alexander F, Emery, Paul and Isaacs, John D. (2005) Analysis of Fcγ receptor haplotypes in rheumatoid arthritis: FCGR3A remains a major susceptibility gene at this locus, with an additional contribution from FCGR3B. Arthritis Research & Therapy, Vol.8 (No.R5). doi:10.1186/ar1847

Moroz, Olga V., Burkitt, William I., Wittkowski, Helmut, He, Wei, Ianoul, Anatoli, Novitskaya, Vera , Xie, Jingjing, Polyakova, Oxana, Lednev, Igor K. , Shekhtman, Alexander, Derrick, Peter J. , Bjoerk, Per, Foell, Dirk and Bronstein, Igor B. (2009) Both Ca2+ and Zn2+ are essential for S100A12 protein oligomerization and function. BMC Biochemistry, Vol.10 (No.11). doi:10.1186/1471-2091-10-11

Morris, Kyle L., Zibaee, Shahin, Chen, Lin, Goedert, Michel, Sikorski, Pawel and Serpell, Louise C. (2013) The structure of cross-β tapes and tubes formed by an octapeptide, αSβ1. Angewandte Chemie International Edition, 52 (8). pp. 2279-2283. doi:10.1002/anie.201207699

Mos, Magdalena, Godfrey, Emma L., Esparza Franco, Manuel A., Richardson, Kathryn, Davey, John and Ladds, Graham (2013) The role of the RACK1 ortholog Cpc2p in modulating pheromone-induced cell cycle arrest in fission yeast. PLoS One, Volume 8 (Number 7). Article number e65927. doi:10.1371/journal.pone.0065927

Muthumeenakshi, S., Goldstein, Alan L., Stewart, Alison and Whipps, J. M. (2001) Molecular studies on intraspecific diversity and phylogenetic position of Coniothyrium minitans. Mycological Research, Vol.10 (No.9). pp. 1065-1074. doi:10.1017/S0953756201004440

(2018) Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis. Nature Communications, 9 (1). 5034 . doi:10.1038/s41467-018-07368-7

Møller-Olsen, Christian, Ho, Siu Fung, Shukla, Ranti Dev, Feher, Tamas and Sagona, Antonia P. (2018) Engineered K1F bacteriophages kill intracellular Escherichia coli K1 in human epithelial cells. Scientific Reports, 8 . 17559. doi:10.1038/s41598-018-35859-6

Nelson, A. C. (Andrew Christopher), Mould, Arne W., Bikoff, Elizabeth K. and Robertson, Elizabeth J. (2017) Mapping the chromatin landscape and Blimp1 transcriptional targets that regulate trophoblast differentiation. Scientific Reports, 7 (1). 6793. doi:10.1038/s41598-017-06859-9

Neufeld, Josh D. , Boden, Rich, Moussard, Hélène, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2008) Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment. Applied and Environmental Microbiology, Vol.74 (No.23). pp. 7321-7328. doi:10.1128/AEM.01266-08

Nev, Olga and Berg, Hugo van den (2018) Holling Type I versus Holling Type II functional responses in Gram-negative bacteria. Transactions of Mathematics and Its Applications, 2 (1). pp. 1-19. doi:10.1093/imatrm/tny001

Nev, Olga and Berg, Hugo van den (2017) Mathematical models of microbial growth and metabolism : a whole-organism perspective. Science Progress, 100 (4). pp. 343-362.

Nev, Olga and Berg, Hugo van den (2018) Microbial metabolism and growth under conditions of starvation modeled as the sliding mode of a differential inclusion. Dynamical Systems, 33 (1). pp. 93-112. doi:10.1080/14689367.2017.1298726

Nev, Olga and Berg, Hugo van den (2017) Optimal management of nutrient reserves in microorganisms under time-varying environmental conditions. Journal of Theoretical Biology, 429 . pp. 124-141.

Nev, Olga and Berg, Hugo van den (2017) Variable-Internal-Stores models of microbial growth and metabolism with dynamic allocation of cellular resources. Journal of Mathematical Biology, 74 (1-2). pp. 409-445. doi:10.1007/s00285-016-1030-4

Nezis, I. P. (2012) The selectivity and specificity of autophagy in drosophila. Cells, Volume 1 (Number 3). pp. 248-262. doi:10.3390/cells1030248

Nguyen, Huy D., Tomitaka, Yasuhiro, Ho, Simon Y. W., Duchêne, Sebastián, Vetten, Heinrich-Josef, Lesemann, D.-E., Walsh, John A., Gibbs, Adrian J. and Ohshima, Kazusato (2013) Turnip mosaic potyvirus probably first spread to Eurasian brassica crops from wild orchids about 1000 years ago. PLoS One, Volume 8 (Number 2). Article no.e55336. doi:10.1371/journal.pone.0055336

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, 11 . p. 10. doi:DOI: 10.1186/1471-2164-11-10

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (Article 10). doi:10.1186/1471-2164-11-10

Nijjar, Sarbjit and Woodland, Hugh R. (2013) Localisation of RNAs into the germ plasm of vitellogenic xenopus oocytes. PLoS One, Volume 8 (Number 4). Article number e61847. doi:10.1371/journal.pone.0061847

Nixon, Faye M., Gutierrez-Caballero, Cristina, Hood, Fiona E., Booth, Daniel G., Prior, Ian A. and Royle, Stephen J. (2015) The mesh is a network of microtubule connectors that stabilizes individual kinetochore fibers of the mitotic spindle. eLife, 4 . pp. 1-21. 07635. doi:10.7554/eLife.07635

Noda-Garcia, Lianet, Camacho-Zarco, Aldo R., Medina-Ruíz, Sophía, Gaytán, Paul, Carrillo-Tripp, Mauricio, Fülöp, Vilmos and Barona-Gómez, Francisco (2013) Evolution of substrate specificity in a recipient's enzyme following horizontal gene transfer. Molecular Biology and Evolution, Volume 30 (Number 9). pp. 2024-2034. doi:10.1093/molbev/mst115

Nutsugah, S. K., Twumasi, J. K., Chipili, J., Sere, Y. and Sreenivasaprasad, S. (2008) Diversity of the Rice Blast Pathogen Populations in Ghana and Strategies for Resistance Management. Plant Pathology Journal, Vol.7 (No.1). pp. 109-113. doi:10.3923/ppj.2008.109.113

Ochanda, Horace, Young, A. S. and Medley, Graham (2003) Survival of Theileria parva in its nymphal tick vector Rhipicephalus appendiculatus under laboratory and quasi natural conditions. Parasitology , Vol.12 (No.6). pp. 571-576. doi:10.1017/S0031182003003147

Okal, Michael N, Lindh, Jenny M, Torr, Stephen J., Masinde, Elizabeth, Orindi, Benedict, Lindsay, Steve W and Fillinger, Ulrike (2015) Analysing the oviposition behaviour of malaria mosquitoes : design considerations for improving two-choice egg count experiments. Malaria Journal, Volume 14 (Number 1). Article number 768. doi:10.1186/s12936-015-0768-2

Otten, Lucienne, Fullam, Elizabeth and Gibson, Matthew I. (2016) Discrimination between bacterial species by ratiometric analysis of their carbohydrate binding profile. Molecular BioSystems, 12 (2). pp. 341-344. doi:10.1039/c5mb00720h

Pacheco, Catarina C., Büttel, Zsófia, Pinto, Filipe, Rodrigo, Guillermo, Carrera, Javier, Jaramillo, Alfonso and Tamagnini, Paula (2018) Modulation of intracellular O2 concentration in Escherichia coli strains using oxygen consuming devices. ACS Synthetic Biology, 7 (7). pp. 1742-1752. doi:10.1021/acssynbio.7b00428

Pacheco, Luis G. C., Slade, Susan E., Seyffert, Núbia, Santos, Anderson R., Castro, Thiago L. P., Silva, Wanderson M., Santos, Agenor V., Santos, Simone G., Farias, Luiz M., Carvalho, Maria A. R., Pimenta, Adriano M. C., Meyer, Roberto, Silva, Artur, Scrivens, James H., Oliveira, Sérgio C., Miyoshi, Anderson, Dowson, Christopher G. and Azevedo, Vasco (2011) A combined approach for comparative exoproteome analysis of Corynebacterium pseudotuberculosis. BMC Microbiology, Vol.11 . article no. 12. doi:10.1186/1471-2180-11-12

Pacheco-Gómez, Raúl, Roper, David I., Dafforn, Tim and Rodger, Alison (2011) The pH dependence of polymerization and bundling by the essential bacterial cytoskeltal protein FtsZ. PLoS One, Vol.6 (No.6). e19369. doi:10.1371/journal.pone.0019369

Page, Andrew J., Alikhan, Nabil-Fareed, Carleton, Heather A., Seemann, Torsten, Keane, Jacqueline A. and Katz, Lee S. (2017) Comparison of classical multi-locus sequence typing software for next-generation sequencing data. Microbial Genomics, 3 (8). e000124. doi:10.1099/mgen.0.000124

Pandey, Anish, Cleary, David W., Laver, Jay R., Gorringe, Andrew, Deasy, Alice M., Dale, Adam P., Morris, Paul D., Didelot, Xavier, Maiden, Martin C. J. and Read, Robert C. (2018) Microevolution of Neisseria lactamica during nasopharyngeal colonisation induced by controlled human infection. Nature Communications, 9 (1). 4753.

(2013) Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus. BMC Genomics, Volume 14 (Number 1). Article number 663. doi:10.1186/1471-2164-14-663

Paulin, Sarah, Jamshad, Mohammed, Dafforn, Tim, Garcia-Lara, Jorge, Foster, Simon J., Galley, Nicola F., Roper, David I., Rosado, Helena and Taylor, Peter W. (2014) Surfactant-free purification of membrane protein complexes from bacteria : application to the staphylococcal penicillin-binding protein complex PBP2/PBP2a. Nanotechnology, Volume 25 (Number 28). Article number 285101. doi:10.1088/0957-4484/25/28/285101

Pearce, David A., Newsham, Kevin K., Thorne, Michael A. S., Calvo-Bado, Leo A., Krsek, Martin, Laskaris, Paris, Hodson, Andrew J. and Wellington, E. M. H. (2012) Metagenomic analysis of a southern maritime Antarctic soil. Frontiers in Microbiology, Volume 3 . Article number 403. doi:10.3389/fmicb.2012.00403

Penman, Bridget S. and Gupta, Sunetra (2018) Detecting signatures of past pathogen selection on human HLA loci : are there needles in the haystack? Parasitology , 145 (6). pp. 731-739. doi:10.1017/S0031182017001159

Penman, Bridget S., Moffett, Ashley, Chazara, Olympe, Gupta, Sunetra and Parham, Peter (2016) Reproduction, infection and killer-cell immunoglobulin-like receptor haplotype evolution. Immunogenetics, 68 (10). pp. 755-764. doi:10.1007/s00251-016-0935-9

Perez-Sepulveda, Blanca, Pitt, Frances Diana, N’Guyen, A. N., Ratin, M., Garczarek, L., Millard, Andrew D. and Scanlan, David J. (2018) Relative stability of ploidy in a marine Synechococcus across various growth conditions. Environmental Microbiology, 10 (4). pp. 428-432. doi:10.1111/1758-2229.12614

Perez-Sepulveda, Blanca, Redgwell, Tamsin, Rihtman, Branko, Pitt, Frances Diana, Scanlan, David J. , Millard, Andrew D. and Hantke, Klaus (2016) Marine phage genomics : the tip of the iceberg. FEMS Microbiology Letters, 363 (15). doi:10.1093/femsle/fnw158

Phillips, Daniel J., Wilde, Marleen, Greco, Francesca and Gibson, Matthew I. (2015) Enzymatically-triggered, isothermally responsive polymers : re-programming poly(oligoethylene glycols) to respond to phosphatase. Biomacromolecules, 16 (10). pp. 3256-3264. doi:10.1021/acs.biomac.5b00929

Piersma, Sjouke, Denham, Emma, Drulhe, Samuel, Tonk, Rudi H. J., Schwikowski, Benno and Dijl, Jan Maarten van (2013) TLM-Quant : an open-source pipeline for visualization and quantification of gene expression heterogeneity in growing microbial cells. PLoS One, Volume 8 (Number 7). Article number e68696. doi:10.1371/journal.pone.0068696

Piper, Jason, Assi, Salam A., Cauchy, Pierre, Ladroue, Christophe, Cockerill, Peter N., Bonifer, Constanze and Ott, Sascha (2015) Wellington-bootstrap : differential DNase-seq footprinting identifies cell-type determining transcription factors. BMC Genomics, 16 (1). pp. 1-8. doi:10.1186/s12864-015-2081-4

Pitt, Frances Diana, Millard, Andrew D., Ostrowski, Martin, Dervish, Suat, Mazard, Sophie, Paulsen, Ian T., Zubkov, Mikhail V. and Scanlan, David J. (2016) A sample-to-sequence protocol for genus targeted transcriptomic profiling : application to marine Synechococcus. Frontiers in Microbiology, 7 . 1592. doi:10.3389/fmicb.2016.01592

Pittera, Justine, Jouhet, Juliette, Breton, Solène, Garczarek, Laurence, Partensky, Frédéric, Maréchal, Éric, Nguyen, Ngoc A., Doré, Hugo, Ratin, Morgane, Pitt, Frances Diana, Scanlan, David J. and Six, Christophe (2017) Thermoacclimation and genome adaptation of the membrane lipidome in marine Synechococcus. Environmental Microbiology, 20 (2). pp. 612-631. doi:10.1111/1462-2920.13985

Ploeg, R. van der, Monteferrante, Carmine G., Piersma, Sjouke, Barnett, James P., Kouwen, Thijs R. H. M., Robinson, Colin and van Dijl, J. M. (2012) High-salinity growth conditions promote tat-independent secretion of tat substrates in Bacillus subtilis. Applied and Environmental Microbiology, Vol.78 (No.21). pp. 7733-7744. doi:10.1128/AEM.02093-12

Ploss, Tina N., Reilman, Ewoud, Monteferrante, Carmine G., Denham, Emma, Piersma, Sjouke, Lingner, Anja, Vehmaanperä, Jari, Lorenz, Patrick and van Dijl, Jan Maarten (2016) Homogeneity and heterogeneity in amylase production by Bacillus subtilis under different growth conditions. Microbial Cell Factories, 15 (1). doi:10.1186/s12934-016-0455-1

Podtelezhnikov, Alexei A. and Wild, David L. (2008) CRANKITE: a fast polypeptide backbone conformation sampler. Source Code for Biology and Medicine, Vol. 3 (No. 12). doi:10.1186/1751-0473-3-12

(2018) Mutations in SELENBP1, encoding a novel human methanethiol oxidase, cause extraoral halitosis. Nature Genetics, 50 (1). pp. 120-129. doi:10.1038/s41588-017-0006-7

Pontiroli, Alessandra, Khera, Tanya T., Oakley, Brian B., Mason, Sam, Dowd, Scot E., Travis, Emma Rachel, Erenso, Girum, Aseffa, Abraham, Courtenay, Orin and Wellington, E. M. H. (2013) Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity. PLoS One, Volume 8 (Number 7). Article number e68648. doi:10.1371/journal.pone.0068648

Pontiroli, Alessandra, Travis, Emma Rachel, Sweeney, F. P., Porter, David, Gaze, William H., Mason, Sam, Hibberd, V., Holden, Jennifer, Courtenay, Orin and Wellington, E. M. H. (2011) Pathogen quantitation in complex matrices : a multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition. PLoS One, Vol.6 (No.3). Article number e17916. doi:10.1371/journal.pone.0017916

Popat, Roman, Harrison, Freya, da Silva, Ana C., Easton, Scott A. S., McNally, Luke, Williams, Paul and Diggle, Stephen P. (2017) Environmental modification via a quorum sensing molecule influences the social landscape of siderophore production. Proceedings of the Royal Society B: Biological Sciences, 284 (1852). 20170200. doi:10.1098/rspb.2017.0200

Prindle, Arthur, Liu, Jintao, Asally, Munehiro, Ly, San, Garcia-Ojalvo, Jordi and Süel, Gürol M. (2015) Ion channels enable electrical communication in bacterial communities. Nature, 527 . pp. 59-63. doi:10.1038/nature15709

Punekar, Avinash S., Samsudin, Firdaus, Lloyd, Adrian J., Dowson, Christopher G., Scott, David J., Khalid, Syma and Roper, David I. (2018) The role of the jaw subdomain of peptidoglycan glycosyltransferases for lipid II polymerization. The Cell Surface, 2 . pp. 54-66. doi:10.1016/j.tcsw.2018.06.002

Puxty, R. J., Evans, David J., Millard, Andrew D. and Scanlan, David J. (2018) Energy limitation of cyanophage development : implications for marine carbon cycling. ISME Journal, 12 . 1273-1286 . doi:10.1038/s41396-017-0043-3

Puxty, Richard J., Millard, Andrew D., Evans, David J. and Scanlan, David J. (2016) Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology, 26 (12). pp. 1585-1589. doi:10.1016/j.cub.2016.04.036

Puxty, Richard John, Perez-Sepulveda, Blanca, Rihtman, Branko, Evans, David J., Millard, Andrew D. and Scanlan, David J. (2015) Spontaneous deletion of an “ORFanage” region facilitates host adaptation in a “photosynthetic” cyanophage. PLoS One, Volume 10 (Number 7). pp. 1-13. Article number e0132642. doi:10.1371/journal.pone.0132642

Pym, Edward C.G., Southall, Tony D., Mee, Christopher J., Brand, Andrea H. and Baines, Richard A. (2006) The homeobox transcription factor Even-skipped regulates acquisition of electrical properties in Drosophila neurons. Neural Development, Vol.1 (No.3). doi:10.1186/1749-8104-1-3

Qin, Cheng, Li, Bin, Fan, Yaya, Zhang, Xian, Yu, Zhiming, Ryabov, Eugene, Zhao, Mei, Wang, Hui, Shi, Nongnong, Zhang, Pengcheng, Jackson, Stephen D. , Tör, Mahmut, Cheng, Qi, Liu, Yule, Gallusci, Philippe and Hong, Yiguo (2017) Roles of dicer-like proteins 2 and 4 in intra- and intercellular antiviral silencing. Plant Physiology, 174 (2). pp. 1067-1081. doi:10.1104/pp.17.00475

Quick, Joshua, Cumley, Nicola, Wearn, Christopher M., Niebel, Marc, Constantinidou, Chrystala, Thomas, Christopher M., Pallen, Mark J., Moiemen, Naiem S., Bamford, Amy, Oppenheim, Beryl and Loman, Nicholas J. (2014) Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital : an observational study using whole-genome sequencing. BMJ Open, Volume 4 (Number 11). Article number e006278. doi:10.1136/bmjopen-2014-006278

Quick, Joshua , Constantinidou, Chrystala, Pallen, Mark J., Oppenheim, Beryl and Loman, Nicholas J. (2014) Draft genome sequence of Elizabethkingia meningoseptica isolated from a traumatic wound. Genome Announcements, Volume 2 (Number 3). Article number e00355-14. doi:10.1128/genomeA.00355-14

Rahmanpour, Rahman and Bugg, Tim (2013) Assembly in vitro of rhodococcus jostii RHA1 encapsulin and peroxidase DypB to form a nano-compartment. FEBS Journal, Volume 280 (Issue 9). pp. 2097-2104. doi:10.1111/febs.12234

Ratheesh, Aparna, Belyaeva, Vera and Siekhaus, Daria E (2015) Drosophila immune cell migration and adhesion during embryonic development and larval immune responses. Current Opinion in Cell Biology, 36 . pp. 71-79. doi:10.1016/j.ceb.2015.07.003

Ray, Swagat and Anderson, Emma C. (2016) Stimulation of translation by human Unr requires cold shock domains 2 and 4, and correlates with poly(A) binding protein interaction. Scientific Reports, 6 . 22461. doi:10.1038/srep22461

Rea, Dean, Van Elzen, Roos, De Winter, Hans, Van Goethem, Sebastiaan, Landuyt, Bart, Luyten, Walter, Schoofs, Liliane, Van Der Veken, Pieter, Augustyns, Koen, De Meester, Ingrid, Fülöp, Vilmos and Lambeir, Anne-Marie (2017) Crystal structure of Porphyromonas gingivalis dipeptidyl peptidase 4 and structure-activity relationships based on inhibitor profiling. European Journal of Medicinal Chemistry, 139 . pp. 482-491. doi:10.1016/j.ejmech.2017.08.024

Reilman, E., Mars, R. A. T., van Dijl, J. M. and Denham, Emma (2014) The multidrug ABC transporter BmrC/BmrD of Bacillus subtilis is regulated via a ribosome-mediated transcriptional attenuation mechanism. Nucleic Acids Research, 42 (18). pp. 11393-11407. doi:10.1093/nar/gku832

Remenyi, Judit, van den Bosch, Mirjam W. M., Palygin, Oleg, Mistry, Rajen B., McKenzie, Colin, Macdonald, Andrew, Hutvagner, Gyorgy, Arthur, J. Simon C., Frenguelli, Bruno G. and Pankratov, Yuriy (2013) miR-132/212 knockout mice reveal roles for these miRNAs in regulating cortical synaptic transmission and plasticity. PLoS One, Volume 8 (Number 4). Article number e62509. doi:10.1371/journal.pone.0062509

Richa, Kumari, Balestra, Cecilia, Piredda, Roberta, Benes, Vladimir, Borra, Marco, Passarelli, Augusto, Margiotta, Francesca, Saggiomo, Maria, Biffali, Elio, Sanges, Remo, Scanlan, David J. and Casotti, Raffaella (2017) Distribution, community composition and potential metabolic activity of bacterioplankton in an urbanized Mediterranean Sea coastal zone. Applied and Environmental Microbiology, 83 (17). e00494-17. doi:10.1128/AEM.00494-17

Richards, Adair D. and Rodger, Alison (2007) Synthetic metallomolecules as agents for the control of DNA structure. Chemical Society Reviews, 36 (No.3). pp. 471-483. doi:10.1039/b609495c

Riddell, Carolyn E., Lobaton Garces, Juan D., Adams, Sally, Barribeau, Seth M., Twell, David and Mallon, Eamonn B. (2014) Differential gene expression and alternative splicing in insect immune specificity. BMC Genomics, Volume 15 (Number 1). Article number 1031. doi:10.1186/1471-2164-15-1031

Rihtman, Branko, Meaden, Sean, Clokie, Martha R. J., Koskella, Britt and Millard, Andrew D. (2016) Assessing Illumina technology for the high-throughput sequencing of bacteriophage genomes. PeerJ, 4 . pp. 1-21. e2055. doi:10.7717/peerj.2055

Robinson, Esther R., Juhas, Mario, Hood, Derek W. and Crook, Derrick (2010) Construction of a novel shuttle vector for use in Haemophilus influenzae and H. parainfluenzae. Journal of Microbiological Methods, 83 (3). pp. 330-334. doi:10.1016/j.mimet.2010.09.010

Robotham, Julie, Jenkins, D. R. and Medley, Graham (2006) Screening strategies in surveillance and control of methicillin-resistant Staphylococcus aureus (MRSA). Epidemiology and Infection, Vol.135 (No.2). pp. 328-342. doi:10.1017/S095026880600687X

(2015) The global threat of antimicrobial resistance : science for intervention. New Microbes and New Infections, 6 . pp. 22-29. doi:10.1016/j.nmni.2015.02.007

Rock, Kat S., Brand, Samuel, Moir, Jo and Keeling, Matthew James (2014) Dynamics of infectious diseases. Reports on Progress in Physics, Volume 77 (Number 2). Article number 026602. doi:10.1088/0034-4885/77/2/026602

Ronan, Jade L., Kadi, Nadia, McMahon, Stephen A., Naismith, James H., Alkhalaf, Lona M. and Challis, Gregory L. (2018) Desferrioxamine biosynthesis : diverse hydroxamate assembly by substrate-tolerant acyl transferase DesC. Philosophical Transactions of the Royal Society B: Biological Sciences, 373 (1748). doi:10.1098/rstb.2017.0068

Ruane, Karen M., Lloyd, Adrian J., Fülöp, Vilmos, Dowson, Christopher G., Barreteau, Hélène, Boniface, Audrey, Dementin, Sébastien, Blanot, Didier, Mengin-Lecreulx, Dominique, Gobec, Stanislav, Dessen, Andréa and Roper, David I. (2013) Specificity determinants for lysine incorporation in staphylococcus aureus peptidoglycan as revealed by the structure of a MurE enzyme ternary complex. Journal of Biological Chemistry, Volume 288 (Number 46). Article number 33439. doi:10.1074/jbc.M113.508135

Ruparell, Avika, Dubern, Jean Frederic, Ortori, Cartherine A, Harrison, Freya, Halliday, Nigel M., Emtage, Abigail, Ashawesh, Mahmoud, Laughton, Charles A., Diggle, Stephen P., Williams, P., Barrett, D. A. (David A.) and Hardie, Kim Rachael (2016) The fitness burden imposed by synthesising quorum sensing signals. Scientific Reports, 6 . pp. 1-10. 33101. doi:10.1038/srep33101

Sagona, Antonia P., Grigonyte, Aurelija M., MacDonald, Paul and Jaramillo, Alfonso (2016) Genetically modified bacteriophages. Integrative Biology, 8 . pp. 465-474. doi:10.1039/c5ib00267b

Salathia, Neeraj , Davis, Seth J., Lynn, James R. , Michaels, Scott D., Amasino, Richard M. and Millar, A. J. (Andrew J.) (2006) FLOWERING LOCUS C -dependent and -independent regulation of the circadian clock by the autonomous and vernalization pathways. BMC Plant Biology, Vol.6 (No.10). doi:10.1186/1471-2229-6-10

Salathé, Marcel and Soyer, Orkun S. (2008) Parasites lead to evolution of robustness against gene loss in host signaling networks. Molecular Systems Biology, Volume 4 . Article no. 202. doi:10.1038/msb.2008.44

Sandu, Pamela, Crepin, Valerie F., Drechsler, Hauke, McAinsh, Andrew D., Frankel, Gad and Berger, Cedric N. (2017) The Enterohemorrhagic Escherichia coli effector EspW triggers actin remodeling in a Rac1-dependent manner. Infection and Immunity, 85 (9). e00244-17. doi:10.1128/IAI.00244-17

Sanghera, Narinder and Pinheiro, Teresa J. T. (2000) Unfolding and refolding of cytochrome c driven by the interaction with lipid micelles. Protein Science, Vol.9 (No.6). pp. 1194-1202. doi:10.1110/ps.9.6.1194

Sarkar, Sourav, Dalgaard, Jacob Z., Millar, Jonathan B. A. and Arumugam, Prakash (2014) The rim15-Endosulfine-PP2ACdc55 signalling module regulates entry into gametogenesis and quiescence via distinct mechanisms in budding yeast. PLoS Genetics, Volume 10 (Number 6). Article number e1004456. doi:10.1371/journal.pgen.1004456

Saunders, Nigel J., Boonmee, Prawit , Peden, John F. and Jarvis, Stephen A. (2005) Inter-species horizontal transfer resulting in core-genome and niche-adaptive variation within Helicobacter pylori. BMC Genomics, Vol.6 (No.9). doi:10.1186/1471-2164-6-9

Sayyid, Faiz and Kalvala, Sara (2016) On the importance of modelling the internal spatial dynamics of biological cells. Biosystems, 145 . pp. 53-66. doi:10.1016/j.biosystems.2016.05.012

Schleker, Sylvia, Kshirsagar, Meghana and Klein-Seetharaman, Judith (2015) Comparing human–Salmonella with plant–Salmonella protein–protein interaction predictions. Frontiers in Microbiology, 6 . 45. doi:10.3389/fmicb.2015.00045

Schäfer, Hendrik, Myronova, Natalia and Boden, Rich (2010) Microbial degradation of dimethylsulphide and related C1-sulphur compounds: organisms and pathways controlling fluxes of sulphur in the biosphere. Journal of Experimental Botany, Vol.61 (No.2). pp. 315-334. doi:10.1093/jxb/erp355

Sclep, Gert, Allemeersch, Joke, Liechti, Robin, De Meyer, Björn, Beynon, Jim, Bhalerao, Rishikesh P., Moreau, Yves, Nietfeld, Wilfried, Renou, Jean-Pierre, Reymond, Philippe, Kuiper, Martin T.R. and Hilson, Pierre (2007) CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes. BMC Bioinformatics, Vol.8 (No.400). doi:10.1186/1471-2105-8-400

Sebastián, Marta, Smith, Alastair F., González, José M., Fredricks, Helen F., Van Mooy, Benjamin, Koblížek, Michal, Brandsma, Joost, Koster, Grielof, Mestre, Mireia, Mostajir, Behzad, Pitta, Paraskevi, Postle, Anthony D., Sánchez, Pablo, Gasol, Josep M., Scanlan, David J., Chen, Yin and sebastian, marta (2016) Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency. The ISME Journal, 10 (4). pp. 968-978. doi:10.1038/ismej.2015.172

Selama, Okba, Amos, Gregory C. A., Djenane, Zahia, Borsetto, Chiara, Laidi, Rabah Forar, Porter, David, Nateche, Farida, Wellington, E. M. H. and Hacène, Hocine (2014) Screening for genes coding for putative antitumor compounds, antimicrobial and enzymatic activities from haloalkalitolerant and haloalkaliphilic bacteria strains of Algerian Sahara soils. BioMed Research International, 2014 . Article number 317524. doi:10.1155/2014/317524

Sens, Pierre and Turner, Matthew S. (2004) Theoretical model for the formation of caveolae and similar membrane invaginations. Biophysical Journal, Vol.86 (No.4). pp. 2049-2057. doi:10.1016/S0006-3495(04)74266-6

Sergaki, Chrysi, Lagunas, Beatriz, Lidbury, Ian, Gifford, Miriam L. and Schäfer, Patrick (2018) Challenges and approaches in microbiome research : from fundamental to applied. Frontiers in Plant Science, 9 . 1205. doi:10.3389/fpls.2018.01205

Sergeant, Martin J., Constantinidou, Chrystala, Cogan, Tristan A., Bedford, Michael R., Penn, Charles W. and Pallen, Mark J. (2014) Extensive microbial and functional diversity within the chicken cecal microbiome. PLoS ONE , Volume 9 (Number 3). Article number e91941. doi:10.1371/journal.pone.0091941

Shah, Kunal M., Webber, Jason, Dr., Carzaniga, Raffaella, Taylor, Deborah M., Fusi, Luca, Clayton, Aled, Brosens, Jan J., Hartshorne, Geraldine M. and Christian, Mark (2013) Induction of microRNA resistance and secretion in differentiating human endometrial stromal cells. Journal of Molecular Cell Biology, Volume 5 (Number 1). pp. 67-70. doi:10.1093/jmcb/mjs058

Shahram, Masoud, Nicholas, Robin, Miles, Roger (Roger J.), Wood, Ann P. and Kelly, Donovan P. (2009) Kinetics of substrate oxidation and hydrogen peroxide production by Mycoplasma mycoides subsp. mycoides Large Colony (LC) type and Mycoplasma mycoides subsp. capri. Research in Veterinary Science, Vol.87 (No.3). pp. 364-366. doi:10.1016/j.rvsc.2009.04.012

Shahram, Masoud, Nicholas, Robin, Wood, Ann P. and Kelly, Donovan P. (2009) Further evidence to justify reassignment of Mycoplasma mycoides subspecies mycoides Large Colony type to Mycoplasma mycoides subspecies capri. Systematic and Applied Microbiology, 33 (1). pp. 20-24. doi:10.1016/j.syapm.2009.10.003

Shen, Shensi, Rodrigo, Guillermo, Prakash, Satya, Majer, Eszter, Landrain, Thomas E., Kiro, Boris, Daros, Jose-Antonio and Jaramillo, Alfonso (2015) Dynamic signal processing by ribozyme-mediated RNA circuits to control gene expression. Nucleic Acids Research, 43 (10). pp. 5158-5170. doi:10.1093/nar/gkv287

Sherrard-Smith, Ellie, Churcher, Thomas S., Upton, Leanna M., Sala, Katarzyna A., Zakutansky, Sara E., Slater, Hannah C., Blagborough, Andrew M. and Betancourt, Michael (2017) A novel model fitted to multiple life stages of malaria for assessing efficacy of transmission-blocking interventions. Malaria Journal, 16 (1). 137. doi:10.1186/s12936-017-1782-3

Shi, Yanbo, Harvey, Ian, Campopiano, Dominic and Sadler, P. J. (2010) Niobium uptake and release by bacterial ferric ion binding protein. Bioinorganic Chemistry and Applications . doi:10.1155/2010/307578

Sierocinski, Pawel, Bayer, Florian, Yvon-Durocher, Gabriel, Burdon, Melia, Großkopf, Tobias, Alston, Mark, Swarbreck, David, Hobbs, Phil J., Soyer, Orkun S. and Buckling, Angus (2018) Biodiversity-function relationships in methanogenic communities. Molecular Ecology, 27 (22). pp. 4641-4651. doi:10.1111/mec.14895

Sierocinski, Pawel, Milferstedt, Kim, Bayer, Florian, Großkopf, Tobias, Alston, Mark, Bastkowski, Sarah, Swarbreck, David, Hobbs, Phil J., Soyer, Orkun S., Hamelin, Jérôme and Buckling, Angus (2017) A single community dominates structure and function of a mixture of multiple methanogenic communities. Current Biology, 27 (21). 3390-3395.e4. doi:10.1016/j.cub.2017.09.056

(2009) Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biology (Online), Vol.10 (No.5). R51. doi:10.1186/gb-2009-10-5-r51

Sinclair, Lucas, Ijaz, Umer Z., Jensen, Lars Juhl, Coolen, Marco J.L., Gubry-Rangin, Cecile, Chroňáková, Alica, Oulas, Anastasis, Pavloudi, Christina, Schnetzer, Julia, Weimann, Aaron, Ijaz, Ali, Eiler, Alexander, Quince, Christopher and Pafilis, Evangelos (2016) Seqenv : linking sequences to environments through text mining. PeerJ, 4 . e2690. doi:10.7717/peerj.2690

Singh, Shivani S., Typas, Athanasios, Hengge, Regine and Grainger, David C. (2011) Escherichia coli σ70 senses sequence and conformation of the promoter spacer region. Nucleic Acids Research, Vol.39 (No.12). pp. 5109-5118. doi:10.1093/nar/gkr080

Six, Christophe, Thomas, Jean-Claude , Garczarek, Laurence, Ostrowski, Martin, Dufresne, Alexis, Blot, Nicolas, Scanlan, David J. and Partensky, Frédéric (2007) Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study. Genome Biology, Vol.8 (No.12). doi:10.1186/gb-2007-8-12-r259

Smith, Alastair, Rihtman, Branko, Stirrup, Rachel, Silvano, Eleonora, Mausz, Michaela A., Scanlan, David J. and Chen, Yin (2018) Elucidation of glutamine lipid biosynthesis in marine bacteria reveals its importance under phosphorus deplete growth in Rhodobacteraceae. The ISME Journal, 84 . e01109-18. doi:10.1038/s41396-018-0249-z

Smith, Benjamin, Hill, Claire, Godfrey, Emma L., Rand, D. A., Berg, Hugo van den, Thornton, Steven, Hodgkin, Matthew N., Davey, John and Ladds, Graham (2009) Dual positive and negative regulation of GPCR signaling by GTP hydrolysis. Cellular Signalling, Vol.21 (No.7). pp. 1151-1160. doi:10.1016/j.cellsig.2009.03.004

Smith, Daniel C. , Sillence, Daniel J., Falguières, Thomas, Jarvis, Rosemary M., Johannes, Ludger, Lord, Mike, Platt, Frances M. and Roberts, L. M. (Lynne M.) (2006) The association of shiga-like toxin with detergent-resistant membranes is modulated by glucosylceramide and is an essential requirement in the endoplasmic reticulum for a cytotoxic effect. Molecular Biology of the Cell, Vol.17 (No.3). pp. 1375-1387. doi:10.1091/mbc.E05-11-1035

Smith, Edward M., Monaghan, E. M. (Emma M.), Huntley, Selene J. and Green, Laura E. (2011) Short communication : preliminary investigation into the effect of freezing and a cryopreservant on the recovery of mastitis pathogens from ewe milk. Journal of Dairy Science, Vol.94 (No.10). pp. 4850-4855. doi:10.3168/jds.2010-4076

Smith, Nichola A., Zhang, Pingyu, Greenough, Simon E., Horbury, Michael D., Clarkson, Guy J., McFeely, Daniel, Habtemariam, Abraha, Salassa, Luca, Stavros, Vasilios G., Dowson, Christopher G. and Sadler, P. J. (2016) Combatting AMR : photoactivatable ruthenium(ii)-isoniazid complex exhibits rapid selective antimycobacterial activity. Chemical Science, 8 (1). pp. 395-404. doi:10.1039/C6SC03028A

Smith, Sarah Marie, Walker, Kelly L., Jones, Alexander S., Smith, Corinne J. and Robinson, Colin (2019) Characterisation of a novel method for the production of single‐span membrane proteins in Escherichia coli. Biotechnology and Bioengineering, 116 (4). pp. 722-733. doi:10.1002/bit.26895

Smith, Sarah Marie, Yarwood, Andrew, Fleck, Roland A., Robinson, Colin and Smith, Corinne J. (2017) TatA complexes exhibit a marked change in organisation in response to expression of the TatBC complex. Biochemical Journal, 474 (9). pp. 1495-1508. doi:10.1042/BCJ20160952

Song, Lijiang, Jenner, Matthew, Masschelein, Joleen, Jones, Cerith, Bull, Matthew J., Harris, Simon R., Hartkoorn, Ruben C., Vocat, Anthony, Romero-Canelón, Isolda, Coupland, Paul, Webster, Gordon, Dunn, Matthew, Weiser, Rebecca, Paisey, Christopher, Cole, Stewart T., Parkhill, Julian, Mahenthiralingam, Eshwar and Challis, Gregory L. (2017) Discovery and biosynthesis of Gladiolin : a Burkholderia gladioli antibiotic with promising activity against Mycobacterium tuberculosis. Journal of the American Chemical Society, 139 (23). pp. 7974-7981. doi:10.1021/jacs.7b03382

Spensley, Katrina J., Wikramaratna, Paul S., Penman, Bridget S., Walker, Andrew, Smith, Adrian L., Pybus, Oliver G., Jean, Létitia , Gupta, Sunetra and Lourenço, José (2019) Reverse immunodynamics : a new method for identifying targets of protective immunity. Scientific Reports, 9 . 2164 . doi:10.1038/s41598-018-37288-x

Spooner, Robert A. and Lord, Mike (2015) Ricin trafficking in cells. Toxins, Volume 7 (Number 1). pp. 49-65. doi:10.3390/toxins7010049

Staniforth, Michael and Stavros, Vasilios G. (2013) Recent advances in experimental techniques to probe fast excited-state dynamics in biological molecules in the gas phase : dynamics in nucleotides, amino acids and beyond. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, Volume 469 (Number 2159). Article number 20130458. doi:10.1098/rspa.2013.0458

Stefanini, Irene (2018) Yeast-insect associations : it takes guts. Yeast, 35 (4). pp. 315-330. doi:10.1002/yea.3309

Stefanini, Irene, Carlin, Silvia, Tocci, Noemi, Albanese, Davide, Donati, Claudio, Franceschi, Pietro, Paris, Michele, Zenato, Alberto, Tempesta, Silvano, Bronzato, Alberto, Vrhovsek, Urska, Mattivi, Fulvio and Cavalieri, Duccio (2017) Core microbiota and metabolome of vitis vinifera L. cv. corvina grapes and musts. Frontiers in Microbiology, 8 . 457. doi:10.3389/fmicb.2017.00457

Stefanini, Irene and Cavalieri, Duccio (2018) Metagenomic approaches to investigate the contribution of the vineyard environment to the quality of wine fermentation : potentials and difficulties. Frontiers in Microbiology, 9 . 991. doi:10.3389/fmicb.2018.00991

Stirk, Emily R., Lythe, Grant, Berg, Hugo van den and Molina-Paris, Carmen (2010) Stochastic competitive exclusion in the maintenance of the naïve T cell repertoire. Journal of Theoretical Biology, Vol.265 (No.3). pp. 396-410. doi:10.1016/j.jtbi.2010.05.004

Sudhakar, Padhmanand, Claire-Jacomin, Anne, Hautefort, Isabelle, Samavedam, Siva, Fatemian, Koorosh, Ari, Eszter, Gul, Leila, Demeter, Amanda, Jones, Emily, Korcsmaros, Tamas and Nezis, Ioannis P. (2019) Targeted interplay between bacterial pathogens and host autophagy. Autophagy . doi:10.1080/15548627.2019.1590519 (In Press)

Sun, Jing, Mausz, Michaela A., Chen, Yin and Giovannoni, Stephen J. (2019) Microbial trimethylamine metabolism in marine environments. Environmental Microbiology, 21 (2). pp. 513-520. doi:10.1111/1462-2920.14461

Sweeney, F. P., Courtenay, Orin, Hibberd, V., Hewinson, R. G., Reilly, L. A., Gaze, William H. and Wellington, E. M. H. (2007) Environmental monitoring of Mycobacterium bovis in badger feces and badger sett soil by real-time PCR, as confirmed by immunofluorescence, immunocapture, and cultivation. Applied and Environmental Microbiology, Vol.73 (No.22). pp. 7471-7473. doi:10.1128/AEM.00978-07

Szomolay, Barbara, Williams, Tamsin, Wooldridge, Linda and Berg, Hugo van den (2013) Co-receptor CD8-mediated modulation of T-cell receptor functional sensitivity and epitope recognition degeneracy. Frontiers in Immunology, Volume 4 . p. 329. doi:10.3389/fimmu.2013.00329

Sánchez-Romero, María Antonia, Busby, S. (Stephen), Dyer, Nigel, Ott, Sascha, Millard, Andrew D. and Grainger, David C. (2010) Dynamic distribution of SeqA protein across the chromosome of Escherichia coli K-12. mBio, Vol.1 (No.1). Article number e00012-10. doi:10.1128/mBio.00012-10

Tamas, Ivica, Dedysh, Svetlana N., Liesack, Werner, Stott, Matthew B., Alam, Maqsudul, Murrell, J. C. (J. Colin) and Dunfield, Peter F. (2010) Complete genome sequence of Beijerinckia indica subsp indica. Journal of Bacteriology, Vol.192 (No.17). pp. 4532-4533. doi:10.1128/JB.00656-10

Tanaka, Joji, Gleinich, Anne S., Zhang, Qiang, Whitfield, Richard, Kempe, Kristian, Haddleton, David M., Davis, Thomas P., Perrier, Sébastien, Mitchell, Daniel A. and Wilson, Paul (2017) Specific and differential binding of N-acetylgalactosamine glycopolymers to the human macrophage galactose lectin and asialoglycoprotein receptor. Biomacromolecules, 18 (5). pp. 1624-1633. doi:10.1021/acs.biomac.7b00228

Tarabra, Elena, An Lee, Ting-Wen, Zammit, Victor A., Vatish, Manu, Yamada, Eijiro, Pessin, Jeffrey E. and Bastie, Claire C. (2017) Differential activation of Fyn kinase distinguishes saturated and unsaturated fats in mouse macrophages. Oncotarget . doi:doi:10.18632/oncotarget.21258

Taubert, Martin, Grob, Carolina, Howat, Alexandra M., Burns, Oliver J., Dixon, Joanna L., Chen, Yin and Murrell, J. C. (J. Colin) (2015) XoxFencoding an alternative methanol dehydrogenase is widespread in coastal marine environments. Environmental Microbiology, 17 (10). pp. 3937-3948. doi:10.1111/1462-2920.12896

Taylor, Andrew, Vágány, Viktória, Jackson, Alison C., Harrison, Richard J., Rainoni, Alessandro and Clarkson, John P. (2016) Identification of pathogenicity-related genes in Fusarium oxysporum f. sp. cepae. Molecular Plant Pathology, 17 (7). pp. 1032-1047. doi:10.1111/mpp.12346

Ternent, Lucy, Mayoh, Daniel, Lees, Martin R. and Davies, Gemma L. (2016) Heparin-stabilised iron oxide for MR applications : a relaxometric study. Journal of Materials Chemistry B, 4 . pp. 3065-3074. doi:10.1039/c6tb00832a

Thanapipatsiri, Anyarat, Gomez-Escribano, Juan Pablo, Song, Lijiang, Bibb, Maureen J., Al-Bassam, Mahmoud, Chandra, Govind, Thamchaipenet, Arinthip, Challis, Gregory L. and Bibb, Mervyn J. (2016) Discovery of unusual biaryl polyketides by activation of a silent streptomyces venezuelae biosynthetic gene cluster. Chembiochem, 17 (22). pp. 2189-2198. doi:10.1002/cbic.201600396

Thanwisai, Aunchalee, Tandhavanant, Sarunporn, Saiprom, Natnaree, Waterfield, Nicholas R., Ke Long, Phan, Bode, Helge B., Peacock, Sharon J. and Chantratita, Narisara (2012) Diversity of Xenorhabdus and Photorhabdus spp. and their symbiotic entomopathogenic nematodes from Thailand. PLoS One, Volume 7 (Number 9). Article number e43835. doi:10.1371/journal.pone.0043835

(2006) The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. PLOS Genetics, Vol.2 (No.12). pp. 2039-2051. doi:10.1371/journal.pgen.0020206

Timofeeva, Yulia and Volynsk, Kirill E. (2015) Calmodulin as a major calcium buffer shaping vesicular release and short-term synaptic plasticity : facilitation through buffer dislocation. Frontiers in Cellular Neuroscience, 9 . pp. 1-13. 239. doi:10.3389/fncel.2015.00239

Tock, Andrew J. , Fourie, Deidré, Walley, Peter G., Holub, E. B., Soler, Alvaro, Cichy, Karen A., Pastor-Corrales, Marcial A., Song, Qijian, Porch, Timothy G., Hart, John P., Vasconcellos, Renato C. C., Vicente, Joana G., Barker, Guy C. and Miklas, Phillip N. (2017) Genome-wide linkage and association mapping of halo blight resistance in common bean to Race 6 of the globally important bacterial pathogen. Frontiers in Plant Science, 8 . doi:10.3389/fpls.2017.01170

Torondel, Belen, Ensink, Jeroen H.J., Gundogdu, Ozan, Ijaz, Umer Zeeshan, Parkhill, Julian, Abdelahi, Faraji, Nguyen, Viet-Anh, Sudgen, Steven, Gibson, Walter, Walker, Alan W. and Quince, Christopher (2016) Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines. Microbial Biotechnology, 9 (2). pp. 209-223. doi:10.1111/1751-7915.12334

Tran, Anh T., Watson, Emma E., Pujari, Venugopal, Conroy, Trent, Dowman, Luke J., Giltrap, Andrew M., Pang, Angel, Wong, Weng-Ruh, Linington, Roger G., Saunders, Jessica, Charman, Susan A., West, Nicholas P., Bugg, Tim, Tod, Julie, Dowson, Christopher G., Roper, David I., Crick, Dean C., Britton, Warwick J. and Payne, Richard J. (2017) Sansanmycin natural product analogues as potent and selective anti-mycobacterials that inhibit lipid I biosynthesis. Nature Communications, 8 . 14414 . doi:10.1038/ncomms14414

Travis, Emma Rachel, Gaze, William H., Pontiroli, Alessandra, Sweeney, Francis P., Porter, David, Mason, Sam, Keeling, Matthew James, Jones, Rebecca M., Sawyer, Jason, Aranaz, Alicia, Castellanos Rizaldos, Elena, Cork, Jennifer, Delahay, Richard J., Wilson, Gavin J., Hewinson, R. Glyn, Courtenay, Orin and Wellington, E. M. H. (2011) An inter-laboratory validation of a real time PCR assay to measure host excretion of bacterial pathogens, particularly of mycobacterium bovis. PLoS One, Vol.6 (No.11). e27369. doi:10.1371/journal.pone.0027369

Tsompanidou, Eleni, Denham, Emma, Sibbald, Mark J. J. B., Yang, Xiao-mei, Seinen, Jolien, Friedrich, Alexander W., Buist, Girbe and Dijl, Jan Maarten van (2012) The sortase A substrates FnbpA, FnbpB, ClfA and ClfB antagonize colony spreading of staphylococcus aureus. PLoS One, Volume 7 (Number 9). Article number e44646. doi:10.1371/journal.pone.0044646

Tsypik, Olga, Makitrynskyy, Roman, Bera, Agnieszka, Song, Lijiang, Wohlleben, Wolfgang, Fedorenko, Victor and Ostash, Bohdan (2017) Role of GntR family regulatory gene SCO1678 in gluconate metabolism in streptomyces coelicolor M145. BioMed Research International, 2017 . pp. 1-9. 9529501. doi:10.1155/2017/9529501

Tyson, Richard A. (Richard Anthony), Zatulovskiy, Evgeny, Kay, Robert R. and Bretschneider, Till (2014) How blebs and pseudopods cooperate during chemotaxis. Proceedings of the National Academy of Sciences of the United States of America, 111 (32). pp. 11703-11708.

Unnikrishnan, Meera, Constantinidou, Chrystala, Palmer, Tracy and Pallen, Mark J. (2017) The enigmatic Esx proteins : looking beyond mycobacteria. Trends in Microbiology, 25 (3). pp. 192-204. doi:10.1016/j.tim.2016.11.004

Usha, Veeraraghavan, Lloyd, Adrian J., Roper, David I., Dowson, Christopher G., Kozlov, Guennadi, Gehring, Kalle, Chauhan, Smita, Imam, Hasan T., Blindauer, Claudia A. and Besra, Gurdyal S. (2016) Reconstruction of diaminopimelic acid biosynthesis allows characterisation of Mycobacterium tuberculosis N-succinyl-L,L-diaminopimelic acid desuccinylase. Scientific Reports, 6 . 23191. doi:10.1038/srep23191

Uytterhoeven, Birgit, Appermans, Kenny, Song, Lijiang, Masschelein, Joleen, Lathouwers, Thomas , Michiels, Chris W. and Lavigne, Rob (2016) Systematic analysis of the kalimantacin assembly line NRPS module using an adapted targeted mutagenesis approach. Microbiology Open, 5 (2). pp. 279-286. doi:10.1002/mbo3.326

Vajs, Jure, Proud, Conor, Brozovic, Anamaria, Gazvoda, Martin, Lloyd, Adrian J., Roper, David I., Osmak, Maja, Košmrlj, Janez and Dowson, Christopher G. (2017) Diaryltriazenes as antibacterial agents against methicillin resistant Staphylococcus aureus (MRSA) and Mycobacterium smegmatis. European Journal of Medicinal Chemistry, 127 . pp. 223-234. doi:10.1016/j.ejmech.2016.12.060

Valappil, Valappil, Pickup, D. M., Carroll, Donna L., Hope, Chris K., Pratten, Jonathan, Newport, Robert J., Smith, Mark E., Wilson, Michael and Knowles, Jonathan C. (2007) Effect of silver content on the structure and antibacterial activity of silver-doped phosphate-based glasses. Antimicrobial Agents and Chemotherapy, Vol.51 (No.12). pp. 4453-4461. doi:10.1128/AAC.00605-07

Valoskova, Katarina, Biebl, Julia, Roblek, Marko, Emtenani, Shamsi, Gyoergy, Attila, Misova, Michaela, Ratheesh, Aparna, Reis-Rodrigues, Patricia, Shkarina, Kateryna, Larsen, Ida Signe Bohse, Vakhrushev, Sergey Y., Clausen, Henrik and Siekhaus, Daria E. (2019) A conserved major facilitator superfamily member orchestrates a subset of O-glycosylation to aid macrophage tissue invasion. eLife, 8 . e41801. doi:10.7554/eLife.41801.001

Vance, Keith W., Woodcock, Dan J., Reid, John E., Bretschneider, Till, Ott, Sascha and Koentges, Georgy (2015) Conserved cis-regulatory modules control robustness in Msx1 expression at single-cell resolution. Genome Biology and Evolution, 7 (9). pp. 2762-2778. doi:10.1093/gbe/evv179

Vavoulis, Dimitris V., Nikitin, Eugeny S., Feng, Jianfeng, Benjamin, Paul R. and Kemenes, György (2007) Computational model of a modulatory cell type in the feeding network of the snail, Lymnaea stagnalis. BMC Neuroscience, Volume 8 (Supplement 2). p. 113. doi:10.1186/1471-2202-8-S2-P113

Vicente, Joana G., Rothwell, Steve, Holub, E. B. and Studholme, David J. (2017) Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida. International Journal of Systematic and Evolutionary Microbiology, 67 (9). pp. 3645-3654. doi:10.1099/ijsem.0.002189

Vidal, A. B., Colles, F. M., Rodgers, J. D., McCarthy, Noel D., Davies, R. H., Maiden, M. C. J. and Clifton-Hadley, F. A. (2016) Genetic diversity of Campylobacter jejuni and Campylobacter coli isolates from conventional broiler flocks and the impacts of sampling strategy and laboratory method. Applied and Environmental Microbiology, 82 (8). pp. 2347-2355. doi:10.1128/AEM.03693-15

Viguetti, S. Z., Pacheco, L. G. C., Santos, L. S., Soares, S. C., Bolt, F., Baldwin, Adam, Dowson, Christopher G., Rosso, M. L., Guiso, N., Miyoshi, A., Hirata, R., Mattos-Guaraldi, A. L. and Azevedo, V. (2012) Multilocus sequence types of invasive Corynebacterium diphtheriae isolated in the Rio de Janeiro urban area, Brazil. Epidemiology and Infection, Volume 140 (Number 4). pp. 617-620. doi:10.1017/S0950268811000963

Vladimirou, Elina, Harry, Edward, Burroughs, Nigel John and McAinsh, Andrew D. (2011) Springs, clutches and motors : driving forward kinetochore mechanism by modelling. Chromosome Research, Volume 19 (Number 3). pp. 409-421. doi:10.1007/s10577-011-9191-x

Vogler, Amy J., Chan, Fabien, Wagner, David M., Roumagnac, Philippe, Lee, Judy, Nera, Roxanne, Eppinger, Mark, Ravel, Jacques, Rahalison, Lila, Rasoamanana, Bruno W., Beckstrom-Sternberg, Stephen M., Achtman, Mark, Chanteau, Suzanne and Keim, Paul (2011) Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar. PLoS Neglected Tropical Diseases, Volume 5 (Number 9). Article number e1319. doi:10.1371/journal.pntd.0001319

Voß, Björn, Bolhuis, Henk, Fewer, David P., Kopf, Matthias, Möke, Fred, Haas, Fabian, El-Shehawy, Rehab, Hayes, Paul, Bergman, Birgitta, Sivonen, Kaarina, Dittmann, Elke, Scanlan, David J., Hagemann, Martin, Stal, Lucas J. and Hess, Wolfgang R. (2013) Insights into the physiology and ecology of the brackish-water-adapted cyanobacterium nodularia spumigena CCY9414 based on a genome-transcriptome analysis. PLoS One, Volume 8 (Number 3). Article no. e60224. doi:10.1371/journal.pone.0060224

Wang, Qianxi, Manmi, Kawa and Liu, Kuo-Kang (2015) Cell mechanics in biomedical cavitation. Interface focus, 5 (5). 20150018. doi:10.1098/rsfs.2015.0018

Wang, Yun, Chen, Yin, Zhou, Qian, Huang, Shi, Ning, Kang, Xu, Jian, Kalin, Robert M., Rolfe, Stephen A. and Huang, Wei E. (2012) A culture-independent approach to unravel uncultured bacteria and functional genes in a complex microbial community. PLoS One, Vol.7 (No.10). e47530. doi:10.1371/journal.pone.0047530

Ward, Philip N., Holden, Matthew T. G., Leigh, James A., Lennard, Nicola, Bignell, Alexandra, Barron, Andy, Clark, Louise, Quail, Michael A., Woodward, John, Barrell, Bart G., Egan, Sharon A., Field, Terence R., Maskell, Duncan, Kehoe, Michael, Dowson, Christopher G. and Chanter, Neil (2009) Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis. BMC Genomics, Vol.10 . Article No. 54. doi:10.1186/1471-2164-10-54

Webber, Mark A., Whitehead, Rebekah N., Mount, Manuella, Loman, Nicholas J., Pallen, Mark J. and Piddock, Laura J. V. (2015) Parallel evolutionary pathways to antibiotic resistance selected by biocide exposure. Journal of antimicrobial chemotherapy, Volume 70 (Number 8). pp. 2241-2248. doi:10.1093/jac/dkv109

Wei, Zhen, Wilkinson, Rachael C., Rashid, Goran M. M., Brown, David J. A., Fülöp, Vilmos and Bugg, Tim (2019) Characterisation of thiamine diphosphate-dependent 4-hydroxybenzoylformate decarboxylase enzymes from Rhodococcus jostii RHA1 and Pseudomonas fluorescens Pf-5 involved in degradation of aryl-C2 lignin degradation fragments. Biochemistry . doi:10.1021/acs.biochem.9b00177 (In Press)

Wentzel, Alexander, Bruheim, Per, Øverby, Anders, Jakobsen, Øyvind M, Sletta, Håvard, Omara, Walid A. M., Hodgson, D. A. and Ellingsen, Trond E. (2012) Optimized submerged batch fermentation strategy for systems scale studies of metabolic switching in Streptomyces coelicolor A3(2). BMC Systems Biology, Volume 6 . Article number 59. doi:10.1186/1752-0509-6-59

West, Nyree J., Lepère, Cécile, Manes, Carmem-Lara de O., Catala, Philippe, Scanlan, David J. and Lebaron, Philippe (2016) Distinct spatial patterns of SAR11, SAR86, and actinobacteria diversity along a transect in the ultra-oligotrophic South Pacific ocean. Frontiers in Microbiology, 7 . 234. doi:10.3389/fmicb.2016.00234

White, L. J., Schukken, Y. H., Lam, T. J. G. M., Medley, Graham and Chappell, M. J. (Michael J.) (2001) A multispecies model for the transmission and control of mastitis in dairy cows. Epidemiology and Infection, Vol.127 (No.3). pp. 567-576. doi:10.1017/S0950268801006100

(2016) Challenges in microbial ecology : building predictive understanding of community function and dynamics. The ISME Journal, 2016 (10). pp. 2557-2568. doi:10.1038/ismej.2016.45

Wilson, W. H. (William H.), Tarran, Glen A. , Schroeder, Declan, Cox, M. J., Oke, Joanne and Malin, Gillian (2002) Isolation of viruses responsible for the demise of an Emiliania huxleyi bloom in the English Channel. Journal of the Marine Biological Association of the UK, Vol.82 (No.3). pp. 369-377. doi:10.1017/S002531540200560X

Wischer, Daniela, Kumaresan, Deepak, Johnston, Antonia, El Khawand, Myriam, Stephenson, Jason, Hillebrand-Voiculescu, Alexandra M., Chen, Yin and Murrell, J. C. (J. Colin) (2015) Bacterial metabolism of methylated amines and identification of novel methylotrophs in Movile Cave. The ISME Journal, 9 . pp. 195-206. doi:10.1038/ismej.2014.102

Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645

Wopfner, N., Willeroider, M., Hebenstreit, Daniel, Ree, R. van, Aalbers, M., Briza, P., Thalhamer, J., Ebner, C., Richter, K. and Ferreira, F. (2002) Molecular and immunological characterization of profilin from mugwort pollen. Biological Chemistry, Volume 383 (Number 11). pp. 1779-1789. doi:10.1515/BC.2002.199

(2016) MUFINS : multi-formalism interaction network simulator. npj Systems Biology and Applications, 2 . 16032. doi:10.1038/npjsba.2016.32

Wu, Jianhua, Kendrick, Keith M. and Feng, Jianfeng (2007) A novel approach to detect hot-spots in large-scale multivariate data. BMC Bioinformatics, Vol.8 (No.331). doi:10.1186/1471-2105-8-331

Xie, Xin, Stubbington, Michael J. T., Nissen, Jesper K., Andersen, Kristian G., Hebenstreit, Daniel, Teichmann, Sarah A. and Betz, Alexander G. (2015) The regulatory T Cell lineage factor Foxp3 regulates gene expression through several distinct mechanisms mostly independent of direct DNA binding. PLoS Genetics, Volume 11 (Number 6). Article number e1005251. doi:10.1371/journal.pgen.1005251

Yahara, Koji, Nakayama, Shu-ichi, Shimuta, Ken, Lee, Ken-ichi, Morita, Masatomo, Kawahata, Takuya, Kuroki, Toshiro, Watanabe, Yuko, Ohya, Hitomi, Yasuda, Mitsuru, Deguchi, Takashi, Didelot, Xavier and Ohnishi, Makoto (2018) Genomic surveillance of Neisseria gonorrhoeae to investigate the distribution and evolution of antimicrobial-resistance determinants and lineages. Microbial Genomics, 4 (8). doi:10.1099/mgen.0.000205

Yang, Bu, Peng, Guangda, Li, Tianbang and Kadowaki, Tatsuhiko (2013) Molecular and phylogenetic characterization of honey bee viruses, Nosema microsporidia, protozoan parasites, and parasitic mites in China. Ecology and Evolution, Volume 3 (Number 2). pp. 298-311. doi:10.1002/ece3.464

Yang, Guowei and Waterfield, Nicholas R. (2013) The role of TcdB and TccC subunits in secretion of the photorhabdus Tcd toxin complex. PLoS Pathogens, Volume 9 (Number 10). Article number e1003644. doi:10.1371/journal.ppat.1003644

Young, Anna, Stoilova-McPhie, Svetla, Rothnie, Alice, Vallis, Yvonne, Harvey-Smith, Phillip, Ranson, Neil, Kent, Helen, Brodsky, Frances M., Pearse, Barbara M. F., Roseman, Alan and Smith, Corinne J. (2013) Hsc70-induced changes in clathrin-auxilin cage structure suggest a role for clathrin light chains in cage disassembly. Traffic, Volume 14 (Number 9). pp. 987-996. doi:10.1111/tra.12085

Young, Lawrence S. (2015) Pathogens best paper awards for 2015. Pathogens, 4 (2). pp. 387-389. 00387. doi:10.3390/pathogens4020387

Yuan, Yinyin, Li, Chang-Tsun and Wilson, Roland (2008) Partial mixture model for tight clustering of gene expression time-course. BMC Bioinformatics, Vol.9 (No.287). doi:10.1186/1471-2105-9-287

Yurkovich, Marie E., Jenkins, Robert, Sun, Yuhui, Tosin, Manuela and Leadlay, P. F. (2017) The polyketide backbone of thiolactomycin is assembled by an unusual iterative polyketide synthase. Chemical Communications, 53 (13). pp. 2182-2185. doi:10.1039/C6CC09934C

Zatulovskiy, Evgeny, Tyson, Richard A. (Richard Anthony), Bretschneider, Till and Kay, Robert R. (2014) Bleb-driven chemotaxis of Dictyostelium cells. The Journal of Cell Biology, 204 (6). pp. 1027-44.

Zerfaß, Christian, Christie-Oleza, Joseph Alexander and Soyer, Orkun S. (2018) Manganese oxide biomineralization is a social trait protecting. Applied and Environmental Microbiology, 85 (92). e02129-18. doi:10.1128/AEM.02129-18

Zhang, Dayi, Berry, James, Zhu, Di, Wang, Yun, Chen, Yin, Jiang, Bo, Huang, Shi, Langford, Harry, Li, Guanghe, Davison, Paul A., Xu, Jian, Aries, Eriv and Huang, Wei E. (2015) Magnetic nanoparticle-mediated isolation of functional bacteria in a complex microbial community. ISME Journal, 9 . pp. 603-614. doi:10.1038/ismej.2014.161

Zhou, Cong, Bowler, Lucas D. and Feng, Jianfeng (2008) A machine learning approach to explore the spectra intensity pattern of peptides using tandem mass spectrometry data. BMC Bioinformatics, Vol.9 (No.325). doi:10.1186/1471-2105-9-325

Zhou, Yu , Ryabov, Eugene V., Zhang, Xuemei and Hong, Yiguo (2008) Influence of viral genes on the cell-to-cell spread of RNA silencing. Journal of Experimental Botany, Vol.59 (No.10). pp. 2803-2813. doi:10.1093/jxb/ern141

Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Cátia, Francisco, Alexandre P. , Carriço, João André and Achtman, Mark (2018) GrapeTree : visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Research, 28 (10). pp. 1395-1404. doi:10.1101/gr.232397.117

Zhou, Zhemin, McCann, Angela, Litrup, Eva, Murphy, Ronan, Cormican, Martin, Fanning, Seamus, Brown, Derek, Guttman, David S., Brisse, Sylvain and Achtman, Mark (2013) Neutral genomic microevolution of a recently emerged pathogen, salmonella enterica serovar agona. PLoS Genetics, 9 (4). e1003471. doi:10.1371/journal.pgen.1003471

Zhou, Zhichao, Chen, Jing, Cao, Huiluo, Han, Ping and Gu, Ji-Dong (2015) Analysis of methane-producing and metabolizing archaeal and bacterial communities in sediments of the northern South China Sea and coastal Mai Po Nature Reserve revealed by PCR amplification of mcrA and pmoA genes. Frontiers in Microbiology, 5 . 789. doi:10.3389/fmicb.2014.00789

Zhu, Chongyu, Schneider, Elena K., Nikolaou, Vasiliki, Klein, Tobias, Li, Jian, Davis, Thomas P., Whittaker, Michael R., Wilson, Paul, Kempe, Kristian, Velkov, Tony and Haddleton, David M. (2017) Hydrolyzable poly[poly(ethylene glycol) methyl ether acrylate]–colistin prodrugs through copper-mediated photoinduced living radical polymerization. Bioconjugate Chemistry . doi:10.1021/acs.bioconjchem.7b00242

Zhu, Chongyu, Schneider, Elena K., Wang, Jiping, Kempe, Kristian, Wilson, Paul, Velkov, Tony, Li, Jian, Davis, Thomas P., Whittaker, Michael R. and Haddleton, David M. (2017) A traceless reversible polymeric colistin prodrug to combat multidrug-resistant (MDR) gram-negative bacteria. Journal of Controlled Release, 259 . pp. 83-91. doi:10.1016/j.jconrel.2017.02.005

Zhu, Yijun , Jameson, Eleanor, Parslow, Rosemary A., Lidbury, Ian, Fu, Tiantian, Dafforn, Tim, Schäfer, Hendrik and Chen, Yin (2014) Identification and characterization of trimethylamine N-oxide (TMAO) demethylase and TMAO permease in Methylocella silvestris BL2. Environmental Microbiology, 16 (10). pp. 3318-3330. doi:10.1111/1462-2920.12585

Zubkov, Mikhail V. , Martin, Adrian P., Hartmann, Manuela, Grob, Carolina and Scanlan, David J. (2015) Dominant oceanic bacteria secure phosphate using a large extracellular buffer. Nature Communications, 6 . 7878. doi:10.1038/ncomms8878

(2015) Carbohydrate scaffolds as glycosyltransferase inhibitors with in vivo antibacterial activity. Nature Communications, 6 . pp. 1-11. 7719. doi:10.1038/ncomms8719

den Bakker, Henk C., Didelot, Xavier, Fortes, Esther D, Nightingale, Kendra K and Wiedmann, Martin (2008) Lineage specific recombination rates and microevolution in Listeria monocytogenes. BMC Evolutionary Biology, Vol. 8 (No. 27). doi:10.1186/1471-2148-8-277

van Damme, Mireille, Bozkurt, Tolga O., Cakir, Cahid, Schornack, Sebastian, Sklenar, Jan, Jones, Alexandra M. and Kamoun, Sophien (2012) The Irish potato famine pathogen Phytophthora infestans translocates the CRN8 kinase into host plant cells. PLoS Pathogens, Volume 8 (Number 8). Article number e1002875. doi:10.1371/journal.ppat.1002875

van der Ploeg, René, Mäder, Ulrike, Homuth, Georg, Schaffer, Marc, Denham, Emma, Monteferrante, Carmine G., Miethke, Marcus, Marahiel, Mohamed A., Harwood, Colin R., Winter, Theresa, Hecker, Michael, Antelmann, Haike and Dijl, Jan Maarten van (2011) Environmental salinity determines the specificity and need for tat-dependent secretion of the YwbN protein in bacillus subtilis. PLoS One, Volume 6 (Number 3). Article number e18140. doi:10.1371/journal.pone.0018140

Öster, Carl, Walkowiak, Grzegorz P., Hughes, Dallas E., Spoering, Amy L., Peoples, Aaron J., Catherwood, Anita C., Tod, Julie A., Lloyd, Adrian J., Herrmann, Torsten, Lewis, Kim, Dowson, Christopher G. and Lewandowski, Józef R. (2018) Structural studies suggest aggregation as one of the modes of action for teixobactin. Chemical Science, 9 (47). pp. 8850-8859. doi:10.1039/c8sc03655a

Özkanca, R., Saribiyik, F., Isik, K., Sahin, N., Kariptas, E. and Flint, Ken P. (2007) Resuscitation and quantification of stressed Escherichia coli K12 NCTC8797 in water samples. Microbiological Research, Vol.16 (No.2). pp. 212-220. doi:10.1016/j.micres.2006.11.014

Conference Item

Kulkarni, Vishwesh V., El Menjra, Lina, Carbonell, Pablo and Faulon, Jean-Loup (2016) Integrated predictive genome-scale models to improve the metabolic re-engineering efficiency. In: 8th International Workshop on Bio-Design Automation, Newcastle-upon-Tyne, UK, 16-18 Aug 2016

Langenkämper, Daniel, Kölling, Jan, Abouna, Sylvie, Khan, Michael, Niehaus, Karsten and Nattkemper, Tim W. (2011) TICAL - a web-tool for multivariate image clustering and data topology preserving visualization. In: MIAAB 2011 (Microscopic Image Analysis with Applications in Biology), Heidelberg, Germany, 2 Sep 2011. Published in: Proceedings of the 2011 Microscopic Image Analysis with Applications in Biology pp. 1-5.

Rossello, M. R., Griffiths, Nathan, Kalvala, Sara, Wellington, E. M. H. and Gaze, William H. (2009) Networking strategies in streptomyces coelicolor. In: 2nd International Conference on Bioinformatics and Systems Biology (BSB 2009), Leipzig, Germany, 23-25 March 2009 (Unpublished)

Vicente, Joana G. and Roberts, Steven J. (2001) Diversity of Pseudomonas syringae isolates from sweet and wild cherry. In: 11th Congress of the Mediterranean Phytopathological Union and 3rd Congress of the Sociedade Portuguesa de Fitopatologia, Évora, Portugal, 17-20 Sep 2001. Published in: Proceedings of the 11th Congress of the Mediterranean Phytopathological Union and 3rd Congress of the Sociedade Portuguesa de Fitopatologia University of Évora, Year: 2001 Pages: 29-31 pp. 29-31.

Working or Discussion Paper

Jiang, Xue, Zerfaß, Christian, Eichmann, Ruth, Asally, Munehiro, Schäfer, P. (Patrick) and Soyer, Orkun S. (2017) Impact of spatial organization on a novel auxotrophic interaction among soil microbes. UNSPECIFIED. BioRxiv: Cold Spring Harbour Laboratories. (Submitted)

Van Boeckel, Thomas P., Tildesley, Michael J., Linard, Catherine, Halloy, José, Keeling, Matthew James and Gilbert, Marius (2013) The Nosoi commute : a spatial perspective on the rise of BSL-4 laboratories in cities. UNSPECIFIED. Cornell University: arXiv. (Unpublished)

Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Catia, Francisco, Alexandre P., Carrico, Joao Andre and Achtman, Mark (2017) GrapeTree : visualization of core genomic relationships among 100,000 bacterial pathogens. Working Paper. BioRxiv: Cold Spring Harbour.

Zhou, Zhemin, Luhmann, Nina, Alikhan, Nabil-Fareed, Quince, Christopher and Achtman, Mark (2017) Accurate reconstruction of microbial strains using representative reference genomes. Working Paper. BioRxiv: Cold Spring Harbour.

Zhou, Zhemin, Lundstrøm, Inge, Tran-Dien, Alicia, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Christophersen, Axel, Quince, Christopher, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon Y. W., Gilbert, M. Thomas P. and Achtman, Mark (2017) Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica. Working Paper. BioRxiv: Cold Spring Harbour.

Journal Item

(2009) Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature, Volume 461 (Number 7262). pp. 393-398. doi:10.1038/nature08358

Habershon, Scott and Baker, Lewis A. (2017) Photosynthetic pigment-protein complexes as highly-connected networks : implications for robust energy transport. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 473 (2201). doi:10.1098/rspa.2017.0112

(2010) Supplementary information to support : 'Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity'. Nature Genetics, 42 (12). pp. 1140-1143. doi:10.1038/ng.705

Thesis or Dissertation

Abbasi, Sophia Y. (1998) A molecular genetic investigation into 2-methyl-3-amyl-6-methoxyprodigiosene (prodigiosin) biosynthesis in Serratia marcescens. PhD thesis, University of Warwick.

Abrahams, Katherine A. (2011) The enzymology of Streptococcus pneumoniae peptidoglycan polymerisation. PhD thesis, University of Warwick.

Albiniak, A. M. (2012) Characterization and exploitation of inner membrane proteins in Escherichia coli. PhD thesis, University of Warwick.

Alford, Justine E. (2013) The interaction of HIV with cellular trafficking pathways. PhD thesis, University of Warwick.

Ali, Hanif (2006) Development of genetic tools in methanotrophs and the molecular regulation of methane monooxygenase. PhD thesis, University of Warwick.

Alkhalaf, Lona M. (2013) Structure, function and substrate tolerance of TxtC. PhD thesis, University of Warwick.

Alnaji, Fadi (2016) Isolation and analysis of recombinants from mixed virus infections of poliovirus using next generation sequencing (NGS) and bioinformatics. PhD thesis, University of Warwick.

Amos, Gregory C. A. (2013) Environmental reservoirs of antibiotic resistance. PhD thesis, University of Warwick.

Arslanoglu, Alper (1999) Studies of the adenovirus 5 L1 gene aimed at developing L1 gene deficiencies for use in gene therapy vectors. PhD thesis, University of Warwick.

Ashraf, William (1990) The genetics and biochemistry of a propane-utilizing "Rhodococcus rhodochrous". PhD thesis, University of Warwick.

Baglieri, J. (2012) Assembly and mechanism of bacterial twin-arginine translocation systems. PhD thesis, University of Warwick.

Bains, William (1982) The structure of cloned histone genes of Xenopus borealis. PhD thesis, University of Warwick.

Baker, Phillip Nigel (1980) A study on the control of interferon production in lymphoblastoid cells. PhD thesis, University of Warwick.

Barnett, James Paul (2009) Organisation and mechanism of bacterial twin arginine translocases. PhD thesis, University of Warwick.

Barona Gómez, Francisco (2003) Functional and structural genomics of amino acid metabolism in Streptomyces coelicolor. PhD thesis, University of Warwick.

Barr, David William (1989) Comparison of iron oxidation by acidophilic bacteria. PhD thesis, University of Warwick.

Bateman, Colin Neil (2009) Investigating gene induction in Listeria monocytogenes during growth in complex media or tissue culture. PhD thesis, University of Warwick.

Beeching, John Rutland (1984) The transfer and stability of the dehalogenase I gene of 'Pseudomonas putida' PP3. PhD thesis, University of Warwick.

Bicz, Joanna (2013) Investigations of siderophore and tetronic acid biosynthesis in streptomyces scabies 87.22. PhD thesis, University of Warwick.

Bloye, Stephen A. (1992) Responses of unicellular cyanobacteria to changes in their carbon regime. PhD thesis, University of Warwick.

Boden, Rich (2009) Metabolism of dimethylsulfide in the bacteria. PhD thesis, University of Warwick.

Borsetto, Chiara (2017) Study and exploitation of diverse soil environments for novel natural product discovery using metagenomic approaches. PhD thesis, University of Warwick.

Braddick, Darren (2012) Quantitative assay methods and mathematical modelling of peptidoglycan transglycosylation. PhD thesis, University of Warwick.

Breadon, Robert Leslie (1988) Development of a system of genetic analyses for Rhodomicrobium vannielii. PhD thesis, University of Warwick.

Breeze, Emily (2014) Action of the AtNF-Y transcription factors in plant stress responses. PhD thesis, University of Warwick.

Brehm, John Karl, 1959- (1989) Studies towards the development of a host:vector system for the genus Clostridium. PhD thesis, University of Warwick.

Bright, John (1983) The physiological activity of attached bacteria. PhD thesis, University of Warwick.

Brind, Robert Ian (2000) The characterisation of Plc1 : a phospholipase C enzyme identified in the fission yeast Schizosaccharomyces pombe. PhD thesis, University of Warwick.

Broughton, Claire E. (2015) A predictive model of bacterial cell division. PhD thesis, University of Warwick.

Brown, Jason Lee (2000) Expression systems for adenovirus late proteins. PhD thesis, University of Warwick.

Brown, Richard Henry (1969) A study of the cell envelope of Halobacterium salinarium. PhD thesis, University of Warwick.

Burgess, Beverley Jane (1993) The biological properties of Shiga-like toxin I. PhD thesis, University of Warwick.

Caamano-Gutierrez, Eva (2016) The effect of diet on Plasmodium falciparum development revealed by NMR metabolomics and image analysis. PhD thesis, University of Warwick.

Caravokyri, Calliope (1990) Characterization of temperature-sensitive mutants of human respiratory syncytial (RS) virus. PhD thesis, University of Warwick.

Carbonero, Franck (2010) Distributions of model microorganisms along an estuarine gradient. PhD thesis, University of Warwick.

Cardy, Donald Leonard Nicholas (1989) The molecular biology of ammonia assimilation in the obligate methanotroph Methylococcus capsulatus strain Bath. PhD thesis, University of Warwick.

Cardy, Susan Mary (1989) Lactobacillus leichmannii as a probe for the quantitation of vitamin B-12. PhD thesis, University of Warwick.

Carter, Andrew T. (1985) VL30 : a mouse retrovirus-like family of repetitive DNA elements. PhD thesis, University of Warwick.

Chadd, Helen E. (1992) Biochemical and molecular approaches to the study of iron nutrition in the marine cyanobacterium synechococcus WH 7803. PhD thesis, University of Warwick.

Chaddock, John Andrew (1992) Structure-function relationships of ricin A-chain. PhD thesis, University of Warwick.

Chambers, Stephen Alexander (1989) The production, purification and catalytic utility of lignin peroxidase from "sporotrichum pulverulentum". PhD thesis, University of Warwick.

Chambers, Stephen P. (1989) Construction, characterisation and utilisation of a novel E. coli expression vector. PhD thesis, University of Warwick.

Chan, Yi-Wah (2010) Characterisation of bacteriophages that infect Acaryochloris. PhD thesis, University of Warwick.

Chawdhri, Rizwana F. (1992) The distribution and diversity of nucleoside N-deoxyribosyltransferase among lactic acid bacteria. PhD thesis, University of Warwick.

Cheng, Xi, Ph.D. (2011) Dynamic assembly, disassembly and bundling of the bacterial cell division protein FtsZ and YgfE (ZapA). PhD thesis, University of Warwick.

Chu, Jie (2012) Towards and understanding of multiple paralogues for metal-handling genes in a coastal cyanobacterium. PhD thesis, University of Warwick.

Clark, Darren Alan (1995) The study of acidophilic, moderately thermophilic iron-oxidizing bacteria. PhD thesis, University of Warwick.

Clarke, Ian Nicholas (1982) Genomic variation in rotaviruses. PhD thesis, University of Warwick.

Cleary, David William (2012) Detection of microbial taxa in complex communities : impacts of relative abundance, gene transfer and persistence of target DNA. PhD thesis, University of Warwick.

Cock, Peter J. A. (2008) Two-component regulation: modelling, predicting & identifying protein-protein interactions & assessing signalling networks of bacteria. PhD thesis, University of Warwick.

Coker, Timothy L. R. (2016) Infection-site-specific responses of Arabidopsis thaliana to the biotrophic oomycete Hyaloperonospora arabidopsidis. PhD thesis, University of Warwick.

Contino, Matteo (2017) Characterisation and control of the dynamical properties of swimming microorganisms under confinement. PhD thesis, University of Warwick.

Cowan, Richard H. (2009) Refolding of protein kinases. PhD thesis, University of Warwick.

Cox, Simon Peter (1992) Iron oxidation and mineral oxidation by moderately thermophilic bacteria. PhD thesis, University of Warwick.

Craven, Mark Antony (1997) Bacteria classification with an electronic nose employing artificial neural networks. PhD thesis, University of Warwick.

Crombie, Andrew (2011) Metabolism of methane and propane and the role of the glyoxylate bypass enzymes in Methylocella silvestris BL2. PhD thesis, University of Warwick.

Dabrowska, Alicja (2017) Opening up the black box of marine phototroph-heterotroph interactions. PhD thesis, University of Warwick.

Davey, John (1984) The accumulation of the influenza virus nucleoprotein in the nuclei of 'xenopus' oocytes. PhD thesis, University of Warwick.

Davidson, Sylvia (1992) The development of genetic techniques for the obligate methanotroph, Methylococcus Capsulatus (Bath). PhD thesis, University of Warwick.

Davies, Adrienne (2015) Microbial quality control management in industry : approaches for assessing bioburden and community composition. PhD thesis, University of Warwick.

Dee, Chris T. (2004) Analysis of slmo, a gene required for normal motor function in Drosophila melanogaster. PhD thesis, University of Warwick.

Derbyshire, Paul (1986) Plasmid maintenance in Escherichia coli K-12. PhD thesis, University of Warwick.

Dilger, Erin (2013) The effects of host-vector relationships and density dependence on the epidemiology of visceral leishmaniasis. PhD thesis, University of Warwick.

Dimmock, John (2002) Functional interactions of the adenovirus serotype 5E4orf3 protein. PhD thesis, University of Warwick.

Dow, Crawford S. (1973) Morphology and physiology of morphologically unusual bacteria. PhD thesis, University of Warwick.

Drummond, James A. (1999) Cloning of two neurally expressed genes found adjacent to P[GAL4]307, a marker of the giant fibre circuit, in Drosophila melanogaster. PhD thesis, University of Warwick.

Edwards, Richard James (2014) An investigation into the structure and function of VanS proteins involved in the two-component VanS/VanR regulatory system controlling antibiotic resistance. PhD thesis, University of Warwick.

Eriksson, Inger Viktoria (2013) The response of synechococcus sp. CC9311 to iron stress. PhD thesis, University of Warwick.

Eyice, Özge (2012) Diversity and activity of microorganisms degrading methylated sulphur compounds in terrestrial environments. PhD thesis, University of Warwick.

Flaxman, Christine Susan (1995) A study of the regulation of undecylprodigiosin biosynthesis in Streptomyces coelicolor A3(2). PhD thesis, University of Warwick.

Fox, Sian L. (1992) Verocytotoxin expression in Escherichia coli. PhD thesis, University of Warwick.

Fu, Tiantian (2017) Quaternary amine metabolism in gut microbiota. PhD thesis, University of Warwick.

Fuller, Nicholas J. (1998) Molecular approaches to the study of marine cyanophages. PhD thesis, University of Warwick.

Galley, Nicola F. (2015) The role of species-specific modifications in peptidoglycan biosynthesis. PhD thesis, University of Warwick.

Gibbs, Thomas W. (1991) An investigation into FtsE and the 76 minute morphogene cluster in "Escherichia coli". PhD thesis, University of Warwick.

Gibson, F. Elizabeth (1991) The development of genetic systems for iron-oxidizing, acidophilic moderate thermophiles. PhD thesis, University of Warwick.

Godfrey, Emma L. (2009) Investigating the signalling characteristics of Gα subunits in the fission yeast Schizosaccharomyces pombe. PhD thesis, University of Warwick.

Godwin, Dianne (1980) The influence of the growth environment on the stability of a drug resistant plasmid in Escherichia coli K12 grown in chemostat culture. PhD thesis, University of Warwick.

Gorham, Hazel Claire (1987) Characterisation of a novel bacteriophage, 0BHG1 : and its interactions with its host "Rhodopseudomonas blastica". PhD thesis, University of Warwick.

Graham, James Fionnlagh (2009) An investigation into the subcellular localisation of co-factors that stimulate prion protein conversion. PhD thesis, University of Warwick.

Griffiths, Daniel (2016) Biosynthesis and discovery of compounds with activity against Acinetobacter baumannii. PhD thesis, University of Warwick.

Griffiths, Scott Andrew (2009) Adaptation and population dynamics arising from the bacteriophage-host system ΦC31-Streptomyces coelicolor M145. PhD thesis, University of Warwick.

Hall, Holly E. (2017) The sporulation-specific small regulatory RNAs of Bacillus subtilis. PhD thesis, University of Warwick.

Hardman, David J. (1980) Dehalogenases in soil bacteria. PhD thesis, University of Warwick.

Harris, Keith J. (1990) The chemoenzymatic preparation of optically active molecules. PhD thesis, University of Warwick.

Hart, Philip John (2010) The cytosolic fate of ricin A chain in target cells. PhD thesis, University of Warwick.

Hartree, David E. (1989) Cloning and characterisation of developmental genes in "Myxococcus xanthus" using a plasmid based promoter probe. PhD thesis, University of Warwick.

Hay, Steven C. (1990) Regulation of C1 metabolism in Methylococcus capsulatus (Bath). PhD thesis, University of Warwick.

Hearn, Jessica M. (2015) Integrating cell screening and mechanism of action data for organometallic anticancer agents. PhD thesis, University of Warwick.

Herron, Paul Robert (1991) Interactions between actinophage and streptomycetes in soil. PhD thesis, University of Warwick.

Hey, Kirsty L. (2015) The temporal and spatial analysis of single cell gene expression. PhD thesis, University of Warwick.

Hicks, Nicola (1992) The enzymatic and chemical synthesis of nucleoside analogues using N-deoxyribosyltransferase from Lactobacillus leichmannii. PhD thesis, University of Warwick.

Hill, Gemma (2016) Investigating wastewater treatment plant impact on antibiotic resistance within UK river systems. PhD thesis, University of Warwick.

Holmes, Antony (2009) Understanding morphogenesis in myxobacteria from a theoretical and experimental perspective. PhD thesis, University of Warwick.

Horta de Passo, Vânia (2016) Molecular genetics of interactions between Xanthomonas campestris pv. raphani and Arabidopsis thaliana. PhD thesis, University of Warwick.

Howard, Katharine Mary (1990) Carbon metabolism and growth of marine unicellular cyanobacteria belonging to the genus "Synechococcus". PhD thesis, University of Warwick.

Idowu, Gideon Aina (2017) Investigations into the biosynthesis and mode of action of methylenomycin antibiotics from Streptomyces coelicolor. PhD thesis, University of Warwick.

Ingham, Victoria A. (2015) Identification of novel transcripts involved in insecticide resistance in African malaria vectors. PhD thesis, University of Warwick.

Jakubovics, Nicholas S. (1998) Biofilms in the potable water distribution network. PhD thesis, University of Warwick.

Jefferyes, Samuel, D. R. (2014) Modelling shape fluctuations during cell migration. PhD thesis, University of Warwick.

Jia, Ying (2009) An investigation into the adsorption of cyanophages to their cyanobacterial hosts. PhD thesis, University of Warwick.

Johnson, Moira A. (1988) Kinetics of RNA synthesis in rotavirus infected cells. PhD thesis, University of Warwick.

Johnson-Rollings, Ashley S. (2012) A polyphasic approach to the study of chitinolytic bacteria in soil. PhD thesis, University of Warwick.

Jones, Ian Martin (1984) Plasmid segregational stability in 'Escherichia coli'. PhD thesis, University of Warwick.

Kallifidas, Dimitrios (2001) Horizontal gene transfer and evolution of antibiotic gene clusters. PhD thesis, University of Warwick.

Karakaya, Haydar (1995) Molecular genetic analysis of the zwf region of cyanobacterial genomes. PhD thesis, University of Warwick.

Kemp, E. Helen (Elizabeth Helen) (1988) A study of the "ompT" gene of "Escherichia coli" K-12. PhD thesis, University of Warwick.

Khera, Tanya (2012) The diversity and distribution of Mycobacterium species in varying ecological and climatic environments. PhD thesis, University of Warwick.

King, Andrew Giuseppe (2014) Interactions between riverbed morphology, water chemistry and microbial diversity : and its impact on pollutant biodegradation. PhD thesis, University of Warwick.

Kulkarni, Anurag (2011) The role of VIF in overcoming the APOBEC3G block to HIV-1 replication. PhD thesis, University of Warwick.

Kumaresa, Deepak (2009) Molecular ecology of methanotrophs in a landfill cover soil. PhD thesis, University of Warwick.

Lappin, Hilary Margaret (1984) Microbial degradation of the herbicide mecoprop by a rhizosphere community. PhD thesis, University of Warwick.

Laskaris, Paris (2009) Evolution of the streptomycin and viomycin biosynthetic clusters and resistance genes. PhD thesis, University of Warwick.

Lawrence, Anne C. (1978) Microbial diversity : a consequence of the aquatic environment. PhD thesis, University of Warwick.

Lea, Nicholas (1996) Processing and trafficking of Shiga-like toxin 1 in eukaryotic cells. PhD thesis, University of Warwick.

Lebens., Michael Richard (1983) The utilization of C[sub]14-C[sub]16 n-alkanes by microorganisms. PhD thesis, University of Warwick.

Lewis, Laura Ann (2012) Investigating the influence of phytopathogenic effectors upon host transcription. PhD thesis, University of Warwick.

Lim, Chae-Hong (1995) The effect of environmental factors on the physiology of aeromonas hydrophila in lake water. PhD thesis, University of Warwick.

Lipscombe, Martin John (1991) Construction and characterisation of "Escherichia coli" heat-labile toxin B-subunit fusion proteins. PhD thesis, University of Warwick.

Lougher, Matthew J. (2015) Functional and structural insights into MmyJ, An ArsR-like transcriptional repressor. PhD thesis, University of Warwick.

Lund, John (1983) The preparation and characterization of component C of 'Methylococcus capsulatus' (Bath). PhD thesis, University of Warwick.

Macdonald, Julie (1987) Studies on motility in Rhodomicrobium vannielii. PhD thesis, University of Warwick.

Marlow, Victoria A. (2013) Mechanistic studies of acetolactate decarboxylase. PhD thesis, University of Warwick.

Marshall, Rowena Margaret (1985) Thermophilic acidophilic bacteria: iron, sulphur and mineral oxidation. PhD thesis, University of Warwick.

Martino, Angela (2013) A new serogroup B meningococcal vaccine : biophysical characterisation of its protein components. PhD thesis, University of Warwick.

Matejtschuk, Paul (1986) Structure and ligand-binding properties of abnormal human albumins. PhD thesis, University of Warwick.

Matos, Cristina F. R. O. (2010) Tat-mediated quality control in Escherichia coli. PhD thesis, University of Warwick.

Matthews, J. A. (1980) In vitro-synthesis of barley storage proteins. PhD thesis, University of Warwick.

May, James Paul (2001) Characterisation of the slr1212 genomic region of the freshwater cyanobacterium Synechocystis sp. PCC 6803. PhD thesis, University of Warwick.

McDowell, David Gordon (1990) A study of plasmid biology in Bacillus thuringiensis subspecies kurstaki HD1-Dipel. PhD thesis, University of Warwick.

McEldowney, Sharron (1984) Attachment of freshwater bacteria to solid surfaces. PhD thesis, University of Warwick.

McGowan, Simon James (1992) Further genetic studies of the carQRS region of Myxococcus xanthus. PhD thesis, University of Warwick.

McGowan, Veronica (1992) Detection, isolation and characterization of marine methanotrophs. PhD thesis, University of Warwick.

Melegaro, Alessia (2005) Epidemiology, mathematical modelling and economics of Streptococcus pneumoniae : assessing the potential impact of vaccination. PhD thesis, University of Warwick.

Millar, Alan L. (1998) The mass spectrometry of selected proteins and peptides. PhD thesis, University of Warwick.

Mitchell, Daniel E. (2015) The rational design and applications of synthetic antifreeze protein mimics. PhD thesis, University of Warwick.

Mook, Piers A. N. (2012) Redefining the population at risk of listeriosis in England and Wales. PhD thesis, University of Warwick.

Mottley, J. (John) (1976) Studies of energy conservation in Chlamydomonas reinhardii. PhD thesis, University of Warwick.

Natale, Alessandra Pia (2010) Genotypic and phenotypic flexibility of microbial communities. PhD thesis, University of Warwick.

Nazaries, Loïc (2011) Impact of land-use changes on the methanotrophic community structure. PhD thesis, University of Warwick.

Needham, James (2009) Analysis of a putative crtW gene of Myxococcus xanthus. PhD thesis, University of Warwick.

Neilson, James (1991) Attachment of bacteria to glass surfaces in pure culture and in mixed suspensions and the effect of growth conditions on that attachment. PhD thesis, University of Warwick.

Nev, Olga (2017) Regulation of nutrient uptake, substrate conversion, and bio-production in micro-organisms. PhD thesis, University of Warwick.

Nilsson Lock, Gun Antonia Evelina (2011) Mutational and computational characterization of transmembrane domains in the fungal G protein-coupled pheromone receptors STE2 and Mam2. PhD thesis, University of Warwick.

Noakes, Karen (1999) Exploiting the retrograde transport of disarmed toxins for the delivery of exogenous antigens into MHC class 1 presentation pathway. PhD thesis, University of Warwick.

O'Connell, Nuala H. (2003) A study of Clostridium difficile in biofilm mode of growth using the Sorbarod filter system. MD thesis, University of Warwick.

O'Neill, Colette (2010) Antibiotic-resistant staphylococci in the agricultural environment : reservoirs of resistance and infection. PhD thesis, University of Warwick.

O'Reilly, Amy (2017) Assay development towards the characterisation of the bifunctional activity of P. aeruginosa and E. coli Class A PBPs. PhD thesis, University of Warwick.

Pardal Bermejo, Alonso Javier (2017) Exploring the role of histone marks and chromatin remodelling ATPases in plant immunity. PhD thesis, University of Warwick.

Parrott, Linda M. (1980) The effects of environmental conditions on the growth, physiology and ultrastructure of the cyanobacterium Anacystis nidulans. PhD thesis, University of Warwick.

Patel, Kirti Kantilal (2001) Biophysical studies on novel metallo-systems and their interactions with DNA and small molecules. PhD thesis, University of Warwick.

Patel, Nisha A. (2012) The use of recently developed mass spectrometry-based proteomic approaches for the study of methylocella silvestris BL2. PhD thesis, University of Warwick.

Patel, Prakash (2009) Investigations of Streptomyces coelicolor A3(2) siderophore binding proteins. PhD thesis, University of Warwick.

Patel, Roshani (2014) Twin arginine translocase (Tat) : structural and functional insight. PhD thesis, University of Warwick.

Pearman, John K. (2012) Molecular ecology and transcriptomics of marine photosynthetic picoeukaryotes. PhD thesis, University of Warwick.

Perez-Sepulveda, Blanca (2015) Molecular basis of cyanophage resistance in marine Synechococcus. PhD thesis, University of Warwick.

Phillips, Daniel J. (2014) Biochemically adaptive materials based on (Iso)thermally-responsive polymers. PhD thesis, University of Warwick.

Phillips, Lesley (1992) The distribution of phenotypic and genotypic characters within streptomycetes and their relationship to antibiotic production. PhD thesis, University of Warwick.

Pilkington, S. J. (1986) The soluble methane monooxygenase and ammonia oxidation in the obligate methanotroph "Methylosinus trichosporium (OB3b)". PhD thesis, University of Warwick.

Piper, Jason (2014) The demarcation of transcription factor binding sites through the analysis of DNase-seq data. PhD thesis, University of Warwick.

Pitt, Frances Diana (2010) Functional characterisation of the pst1 and pst2 gene clusters in Synechocystis sp. PCC6803. PhD thesis, University of Warwick.

Poon, Vincent (2015) Analysis and exploitation of AHFCA-dependent signalling systems in Streptomyces bacteria. PhD thesis, University of Warwick.

Potts, Linda Elizabeth (1980) Structure of the R. vannielii genome. PhD thesis, University of Warwick.

Prakash, Satya (2018) De novo engineering of trans-activating riboswitches in E. coli. PhD thesis, University of Warwick.

Pringle, James Howard (1984) The role of bacterial surface polymers in the adhesion of freshwater bacteria to solid surfaces. PhD thesis, University of Warwick.

Prior, Bernadette M. (1985) Production and characterization of monoclonal antibodies to tissue culture adapted calf rotavirus (UK-Compton strain). PhD thesis, University of Warwick.

Quigley, Andrew Michael (2010) The two-component system controlling inducible glycopeptide resistance in Enterococci. PhD thesis, University of Warwick.

Rahman, M. Tanvir (2010) Molecular ecology of facultative methanotrophs. PhD thesis, University of Warwick.

Ratamero, Erick Martins (2017) Bacterial inner membrane remodelling by force generation of FtsZ fibres. PhD thesis, University of Warwick.

Reeves, Philip J., 1964- (1991) Molecular genetic analysis of extracellular enzyme secretion by Erwinia carotovora. PhD thesis, University of Warwick.

Ren, Chao, Ph.D. (2011) The twin arginine translocation pathway in Escherichia coli : mechanism and quality control. PhD thesis, University of Warwick.

Richards, Sarah-Jane (2014) Glycosylated nanomaterials : neutralisation and detection of bacteria and toxins. PhD thesis, University of Warwick.

Rihtman, Branko (2016) Viral infection of marine picoplankton under nutrient depletion conditions : pseudolysogeny and magic spot nucleotides. PhD thesis, University of Warwick.

Robertson, Fiona E. (1996) Starvation-survival in Escherichia coli. PhD thesis, University of Warwick.

Robson, Paul R. H. (1991) Towards the mechanism of carotenogenesis in Myxococcus xanthus. PhD thesis, University of Warwick.

Robson, William Nigel (1993) Physiological and genetic studies of deoxynojirimycin production in streptomyces species. PhD thesis, University of Warwick.

Rodolis, Maria T. (2013) Interaction of translocase MraY with the antibacterial E protein from bacteriophage ΦX174. PhD thesis, University of Warwick.

Romero-Zepeda, Hilda (1999) The influence of ribosomal proteins on the action of ribosome-inactivating proteins. PhD thesis, University of Warwick.

Russell, George Cameron (1984) Inverted repeat sequences in the genome of 'Rhodomicrobium vannielii'. PhD thesis, University of Warwick.

Rutter, Gil (2015) Coarse-grained simulations of intrinsically disordered peptides. PhD thesis, University of Warwick.

Sanders, Rhiannon (1986) Segregational stability of plasmids in Bacillus subtilis. PhD thesis, University of Warwick.

Sandhu, Sandeep (2010) Development of an antibody-based assay for methicillin resistant Staphylococcus aureus using synthetic peptidoglycan precursors. PhD thesis, University of Warwick.

Sargeant, Stephanie L. (2013) Microbial utilisation of methanol in seawater. PhD thesis, University of Warwick.

Sazinas, Pavelas (2016) The application of high-throughput sequencing to study the genome composition and transcriptional response of Haemophilus influenzae. PhD thesis, University of Warwick.

Schwarzentruber, Patrick (2003) Microbiological characterisation of white pigment slurries : a strategy for bacteria management. PhD thesis, University of Warwick.

Sheldon, Rachel E. (2014) The role of gap junctions in the excitability of the myometrial smooth muscle network. PhD thesis, University of Warwick.

Shepherd, Jennifer (2011) Characterisation of pneumococcal peptidoglycan cross-linking enzymology. PhD thesis, University of Warwick.

Shuttleworth, Helen L. (1991) Studies on the expression of a cloned Staphylococcus aureus protein A gene in Escherichia coli. PhD thesis, University of Warwick.

Sidda, John David (2015) Discovery and biosynthesis of novel natural products from Streptomyces venezuelae. PhD thesis, University of Warwick.

Simmons, Hilary (1988) Establishment and analysis of bacterial biofilm subjected to fluid flow under varying nutrient conditions. PhD thesis, University of Warwick.

Simmons, Susan (2001) The microbial ecology of acidic environments. PhD thesis, University of Warwick.

Simpson, Helen D. (1987) The metabolism of toluene by thermotolerant bacteria. PhD thesis, University of Warwick.

Slater, Ross T. (2018) Characterising the role of LuxS during the biofilm formation of Clostridioides difficile. PhD thesis, University of Warwick.

Sleeman, Katrina (2003) Identification of proteins interacting with the polymerase (L) protein of rinderpest virus. PhD thesis, University of Warwick.

Smith, Alastair F. (2017) How do marine bacteria respond to nutrient limitation?: a lipidomics approach. PhD thesis, University of Warwick.

Smith, Christopher A. (2016) Kinetochore dynamics and their attachment to the mitotic spindle. PhD thesis, University of Warwick.

Smith, Neil A. (1988) Metabolism of dimethyl disulphide, carbon disulphide and other volatile sulphur compounds by chemolithoautotrophic sulphur bacteria. PhD thesis, University of Warwick.

Smith, Sarah Marie (2015) An investigation into the structure and localisation of the bacterial twin arginine translocase (Tat) complexes by electron microscopy. PhD thesis, University of Warwick.

Sotenko, Maria V. (2010) Bicatalytic conversion of glycerol to value-added products. PhD thesis, University of Warwick.

Spenceley, Hazel (1993) Bacterial attachment and biofilm development. PhD thesis, University of Warwick.

Stafford, Graham P. (2002) Regulation of methane monooxygenase genes in methanotrophs. PhD thesis, University of Warwick.

Stephens, Gillian Mary (1983) The metabolism of gaseous n-alkanes by bacteria. PhD thesis, University of Warwick.

Stephenson, Jason (2014) Methanotrophy in Movile Cave. PhD thesis, University of Warwick.

Stoakes, Emily Anne (2017) Campylobacter jejuni: deciphering the role of F1hF in flagellar biogenesis. PhD thesis, University of Warwick.

Styles, Kathryn (2016) Investigating interactions between methylenomycin furan microbial hormones and transcriptional repressors in Streptomyces coelicolor. PhD thesis, University of Warwick.

Summerfield, Andrew (2009) Role of co-factor biosynthesis in Listeria monocytogenes virulence. PhD thesis, University of Warwick.

Suzuki, Motoshi (1988) Development of a process for the production of propylene oxide in methane-oxidising bacteria. PhD thesis, University of Warwick.

Tate, Stephen A. (1996) The modifier protein of formaldehyde dehydrogenase from Methylococcus capsulatus (Bath). PhD thesis, University of Warwick.

Tetlow, Mary Louise (2015) The role of pathogen effector proteins in altering host plant transcription. PhD thesis, University of Warwick.

Thomson, Nicholas Robert (1996) Co-ordinate regulation of antibiotic and pigment production by the Serratia Rap protein : evidence for a novel family of regulatory proteins. PhD thesis, University of Warwick.

Thoroughgood, Christopher W. (2018) Functional and structural studies of an Enterococcal Serine/Threonine kinase and its contribution to antibiotic resistance mechanisms. PhD thesis, University of Warwick.

Trahearn, Nicholas (2017) Registration and multi-immunohistochemical analysis of whole slide images of serial tissue sections. PhD thesis, University of Warwick.

Tételin, Stéphanie (2008) An analysis of wnt signalling molecules in Xenopus pronephros development. PhD thesis, University of Warwick.

Urabi, Iftikhar (1993) Virulence factors of verotoxin-producing Escherichia coli O157:H7. PhD thesis, University of Warwick.

Venables, Neil A. (2015) The electrostatic analysis of TOG-domains from XMAP215/DIS1 family members. PhD thesis, University of Warwick.

Wang, Tongtong (2016) Resistance to Turnip mosaic virus (TuMV) in Brassica juncea and introgression of resistance from Brassica rapa, Brassica napus and Brassica nigra into Brassica juncea. PhD thesis, University of Warwick.

Warmington, Rachel Julie (2014) Pathogen diversity, epidemiology and control of sclerotinia disease in vegetable crops. PhD thesis, University of Warwick.

Warren, Gemma Zara Louise (2009) The twin arginine translocase pathway : a functional and structural study in Escherichia coli and Synechocystis sp. PCC6803. PhD thesis, University of Warwick.

Waters, Barry Williams (1982) Mechanistic aspects of the monooxygenase system from Methylococcus capsulatus. PhD thesis, University of Warwick.

Watkins, Gemma L. (2012) A comparison of HIV-1 and HIV-2 gag gene expression. PhD thesis, University of Warwick.

Watts, Joy E. M. (1998) Analysis of microbial diversity in polluted and non-polluted soils : a comparison of genetic, functional and culture based techniques. PhD thesis, University of Warwick.

Whalley, Peter (1987) The proteolytic and saccharolytic activity of some natural waters and their associated bacteria. PhD thesis, University of Warwick.

Wharam, Susan Deborah (1992) The Molecular and genetic characterization of the secretory apparatus of Erwinia Carotovora subsp. Carotovora. PhD thesis, University of Warwick.

Williams, Simon (2013) Microbial ecology of anammox bacteria in estuarine and oxygen minimum zone environments. PhD thesis, University of Warwick.

Williams, Timothy David (1995) Aspects of lithoautotrophy in iron-oxidizing thermoacidophilic archaea. PhD thesis, University of Warwick.

Witcomb, Luci (2012) The in situ analysis of the microbial community associated with footrot of sheep. PhD thesis, University of Warwick.

Woodman, Andrew (2015) The contribution of the RNA dependent RNA polymerase to genetic recombination in enteroviruses. PhD thesis, University of Warwick.

Woods, Nigel R. (1988) The bacterial metabolism of propane. PhD thesis, University of Warwick.

Woolven-Allen, John (2008) An investigation into the potential impacts of ocean acidification and ocean fertilisation on the genetic diversity of marine bacterial assemblages. PhD thesis, University of Warwick.

Wormleaton, Sally Louise (2000) Molecular and biological studies of fast and slow killing granuloviruses. PhD thesis, University of Warwick.

Wright, Emma, (Researcher in life sciences) (2013) The effect of pathogens on honeybee learning and foraging behaviour. PhD thesis, University of Warwick.

Wright, Jordan (2010) The role of PML proteins in adenovirus type 5 infection and the type I interferon response. PhD thesis, University of Warwick.

Yaxley, Alice M. (2009) Study of the complete genome sequence of Streptomyces scabies (or scabiei) 87.22. PhD thesis, University of Warwick.

Young, Jamie Stuart (2003) Molecular detection of Mycobacterium bovis in the environment. PhD thesis, University of Warwick.

Zhu, Yijun (2016) Genetics and molecular mechanism of trimethylamine N-oxide demethylase of Methylocella silvestris BL2. PhD thesis, University of Warwick.

Dataset

(2015) Data for Molecular analysis of asymptomatic Bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition. [Dataset]

Davies, Gemma L. and Ternent, Lucy (2016) Data for Heparin stabilised iron oxide for MR applications: a relaxometric study. [Dataset]

Habershon, Scott and Baker, Lewis A. Data for Photosynthetic pigment-protein complexes as highly-connected networks : implications for robust energy transport. [Dataset]

Hasan, Muhammad, Fayter, Alice E. R. and Gibson, Matthew I. (2018) Data for Ice recrystallization inhibiting polymers enable glycerol-free cryopreservation of microorganisms. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica. Archive package of additional figures, tables and data. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 1. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 2. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 3. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 4. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 5. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 6. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 7. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 8. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 1. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 2. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 3. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 4. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 5. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 6. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 7. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 8. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 1. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 2. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 3. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 4. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Salmonella supertree 1. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Salmonella supertree 2. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Salmonella supertree 3. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ancestral reconstruction 1. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ancestral reconstruction 2. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 1. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 2. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 3. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 4. [Dataset]

Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: workflow. [Dataset]

Zhu, Chongyu, Schneider, Elena K., Nikolaou, Vasiliki, Klein, Tobias, Li, Jian, Davis, Thomas P., Whittaker, Michael R., Wilson, Paul, Kempe, Kristian, Velkov, Tony and Haddleton, David M. (2017) Data for Hydrolyzable poly[poly(ethylene glycol) methyl ether acrylate]–colistin prodrugs through copper-mediated photoinduced living radical polymerization. [Dataset]

Zhu, Chongyu, Schneider, Elena K., Wang, Jiping, Kempe, Kristian, Wilson, Paul, Velkov, Tony, Li, Jian, Davis, Thomas P., Whittaker, Michael R. and Haddleton, David M. (2017) Data for A traceless reversible polymeric colistin prodrug to combat multidrug-resistant (MDR) gram-negative bacteria. [Dataset]

Öster, Carl, Walkowiak, Grzegorz P., Hughes, Dallas E., Spoering, Amy L., Peoples, Aaron J., Catherwood, Anita C., Tod, Julie A., Lloyd, Adrian J., Herrmann, Torsten, Lewis, Kim, Dowson, Christopher G. and Lewandowski, Józef R. (2018) Data for Structural studies suggest aggregation as one of the modes of action for teixobactin. [Dataset]