Journal Article

Abebe, A., Nokes, D. James, Dejene, A., Enquselassie, F., Messele, T. and Cutts, Felicity (2003) Seroepidemiology of hepatitis B virus in Addis Ababa Ethiopia: transmission patterns and vaccine control. Epidemiology and Infection, Vol.13 (No.1). pp. 757-770. doi:10.1017/S0950268803008574

Al Wattar, Bassel H., Dodds, Julie, Placzek, Anna, Beresford, Lee, Spyreli, Eleni, Moore, Amanda, Gonzalez-Carreras, Francisco J., Austin, Frances, Murugesu, Nilaani, Roseboom, Tessa J., Bes-Rastrollo, Maira, Hitman, Graham A., Hooper, Richard, Khan, Khalid S. and Thangaratinam, Shakila (2019) Mediterranean-style diet in pregnant women with metabolic risk factors (ESTEEM) : a pragmatic multicentre randomised trial. PLoS Medicine, 16 (7). e1002857. doi:10.1371/journal.pmed.1002857

Antoniou, Maria, Messaritakis, Ippokratis, Christodoulou, Vasiliki , Ascoksilaki, Ioanna, Kanavakis, Nikos, Sutton, A. J., Carson, Connor and Courtenay, Orin (2009) Increasing incidence of zoonotic visceral leishmaniasis on Crete, Greece. Emerging Infectious Diseases (Online), Vol.15 (No.6). pp. 932-934. doi:10.3201/eid1506.071666

Awan, Ruqayya, Sirinukunwattana, Korsuk, Epstein, D. B. A., Jefferyes, Samuel, D. R., Qidwai, Uvais, Aftab, Zia, Mujeeb, Imaad, Snead, David R. J. and Rajpoot, Nasir M. (2017) Glandular morphometrics for objective grading of colorectal adenocarcinoma histology images. Scientific Reports, 7 . 16852. doi:10.1038/s41598-017-16516-w

Barneda, David, Planas-Iglesias, Joan, Gaspar, Maria L., Mohammadyani, Dariush, Prasannan, Sunil, Dormann, Dirk, Han, Gil-Soo, Jesch, Stephen A., Carman, George M., Kagan, Valerian, Parker, Malcolm G., Ktistakis, Nicholas T., Klein-Seetharaman, Judith, Dixon, Ann M., Henry, Susan A. and Christian, Mark (2015) The brown adipocyte protein CIDEA promotes lipid droplet fusion via a phosphatidic acid-binding amphipathic helix. eLife, 4 . doi:10.7554/eLife.07485

(2015) Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition. Infection and Immunity, Volume 83 (Number 5). pp. 1749-1764. doi:10.1128/IAI.02810-14

Bridges, Rebecca G., Sohn, Sook-Young, Wright, Jordan L., Leppard, Keith and Hearing, Patrick (2016) The adenovirus E4-ORF3 protein stimulates SUMOylation of general transcription factor TFII-I to direct proteasomal degradation. mBio, 7 (1). e02184-15. doi:10.1128/mBio.02184-15

Burroughs, Nigel John and Wülfing, Christoph (2002) Differential segregation in a cell-cell contact interface: the dynamics of the immunological synapse. Biophysical Journal, Vol.83 (No.4). pp. 1784-1796. doi:10.1016/S0006-3495(02)73944-1

Cameron, Amy R., Morrison, Vicky L., Levin, Daniel, Mohan, Mohapradeep, Forteath, Calum, Beall, Craig, McNeilly, Alison D., Balfour, David J. K., Savinko, Terhi, Wong, Aaron K. F., Viollet, Benoit, Sakamoto, Kei, Fagerholm, Susanna C., Foretz, Marc, Lang, Chim C. and Rena, Graham (2016) Anti-inflammatory effects of metformin irrespective of diabetes status. Circulation research, 119 (5). pp. 652-65. doi:10.1161/CIRCRESAHA.116.308445

Campbell, Norm RC , He , Feng J, Tan, Monique, Cappuccio, Francesco, Neal, Bruce, Woodward, Mark, Cogswell, Mary E, McLean, Rachael, Arcand, JoAnne, MacGregor, Graham A , Whelton, Paul A, Jula, Antti, L’Abbe, Mary R, Cobb, Laura K and Lackland, Daniel T (2019) The International Consortium for Quality Research on Dietary Sodium/Salt (TRUE) position statement on the use of 24-hour, spot and short duration (less than 24-hours) timed urine collections to assess dietary sodium intake. Journal of Clinical Hypertension . doi:10.1111/jch.13551 (In Press)

CMPath AI in Histopathology Working Group (Including: Colling, Richard, Pitman, Helen, Oien, Karin, Rajpoot, Nasir M. (Nasir Mahmood), Macklin, Philip, Snead, David, Sackville, Tony and Verrill, Clare). (2019) Artificial intelligence in digital pathology : a roadmap to routine use in clinical practice. Journal of Pathology . doi:10.1002/path.5310 (In Press)

Cook, Alexander B., Peltier, Raoul, Zhang, Junliang, Gurnani, Pratik, Tanaka, Joji, Burns, James A., Dallmann, Robert, Hartlieb, Matthias and Perrier, Sébastien (2019) Hyperbranched poly(ethylenimine-co-oxazoline) by thiol–yne chemistry for non-viral gene delivery : investigating the role of polymer architecture. Polymer Chemistry, 10 (10). pp. 1202-1212. doi:10.1039/C8PY01648H (In Press)

Cox, M. J. and Medley, Graham (2003) Serological survey of anti-group A rotavirus IgM in UK adults. Epidemiology and Infection, Vol.131 (No.1). pp. 719-726. doi:10.1017/S0950268803008720

Cree, Ian A., Deans, Zandra, Ligtenberg, Marjolijn J. L., Normanno, Nicola, Edsjo, Anders, Rouleau, Etienne, Sole, Francesc, Thunnissen, Eriq, Timens, Wim, Schuuring, Ed, Dequeker, Elisabeth, Murray, Samuel, Dietel, Manfred, Groenen, Patricia and Van Krieken, J. Han (2014) Guidance for laboratories performing molecular pathology for cancer patients. Journal of Clinical Pathology, Volume 67 . pp. 923-931. doi:10.1136/jclinpath-2014-202404

Dark, Paul, Wilson, Claire, Blackwood, Bronagh, McAuley, Daniel F., Perkins, Gavin D., McMullan, Ronan, Gates, Simon and Warhurst, Geoffrey (2012) Accuracy of LightCycler(R) SeptiFast for the detection and identification of pathogens in the blood of patients with suspected sepsis : a systematic review protocol. BMJ Open, Vol.2 (No.1). e000392-e000392. doi:10.1136/bmjopen-2011-000392

Dewulf, Melissa, Köster, Darius, Sinha, Bidisha, Viaris de Lesegno, Christine, Chambon, Valérie, Bigot, Anne, Bensalah, Mona, Negroni, Elisa, Tardif, Nicolas, Podkalicka, Joanna, Johannes, Ludger, Nassoy, Pierre, Butler-Browne, Gillian, Lamaze, Christophe and Blouin, Cedric M. (2019) Dystrophy-associated caveolin-3 mutations reveal that caveolae couple IL6/STAT3 signaling with mechanosensing in human muscle cells. Nature Communications, 10 (1). 1974 . doi:10.1038/s41467-019-09405-5

Dimitriadis, Georgios K., Kaur, Jaspreet, Adya, Raghu, Miras, Alexander D., Mattu, Harman S., Hattersley, John G., Kaltsas, Gregory, Tan, Bee K. and Randeva, Harpal S. (2018) Chemerin induces endothelial cell inflammation: activation of nuclear factor-kappa beta and monocyte-endothelial adhesion. Oncotarget . (In Press)

Donadoni, Francesca, Pichardo-Almarza, Cesar, Bartlett, Matthew, Dardik, Alan, Homer-Vanniasinkam, Shervanthi and Díaz-Zuccarini, Vanessa (2017) Patient-specific, multi-scale modeling of neointimal hyperplasia in vein grafts. Frontiers in Physiology, 8 . 226. doi:10.3389/fphys.2017.00226

Eames, Ken T. D. (2006) Contact tracing strategies in heterogeneous populations. Epidemiology and Infection, Vol.13 (No.3). pp. 443-454. doi:10.1017/S0950268806006923

CAMELYON16 Consortium (Including:

). (2017) Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer. JAMA: The Journal of the American Medical Association, 318 (22). 2199. doi:10.1001/jama.2017.14585

Elvevåg, Brita, McCormack, Teresa, Gilbert, A., Brown, G. D. A. (Gordon D. A.), Weinberger, Daniel R. (Daniel Roy) and Goldberg, Terry E. (2003) Duration judgements in patients with schizophrenia. Psychological Medicine, Vol.33 (No.7). pp. 1249-1261. doi:10.1017/S0033291703008122

Enquselassie, F., Ayele, W., Dejene, A., Messele, T., Abebe, A., Cutts, Felicity and Nokes, D. James (2003) Seroepidemiology of measles in Addis Ababa Ethiopia: implications for control through vaccination. Epidemiology and Infection, Vol.13 (No.3). pp. 507-519. doi:10.1017/S0950268803008446

Graham, Simon, Chen, Hao, Gamper, Jevgenij, Dou, Qi, Heng, Pheng-Ann, Snead, David, Tsang, Yee Wah and Rajpoot, Nasir M. (Nasir Mahmood) (2019) MILD-Net : Minimal information loss dilated network for gland instance segmentation in colon histology images. Medical Image Analysis, 52 . pp. 199-211. doi:10.1016/j.media.2018.12.001

Gurcan, Metin N., Boucheron, Laura E., Can, Ali, Madabhushi, Anant, Rajpoot, Nasir M. and Yener, Bülent (2009) Histopathological image analysis : a review. IEEE Reviews in Biomedical Engineering, Vol.2 . pp. 147-171. doi:10.1109/RBME.2009.2034865

Harding, Geoffrey, Campbell, John L., Parsons, Suzanne, Anisur, Anisur and Underwood, Martin (2010) British pain clinic practitioners' recognition and use of the bio-psychosocial pain management model for patients when physical interventions are ineffective or inappropriate : results of a qualitative study. BMC Musculoskeletal Disorders, Vol.11 . Article 51. doi:10.1186/1471-2474-11-51

Harper, Claire V., Woodcock, Dan J., Lam, Connie, Garcia-Albornoz, Manuel, Adamson, Antony, Ashall, Louise, Rowe, William, Downton, Polly J., Schmidt, Lorraine, West, Simon, Spiller, David G., Rand, David A. and White, Michael R. H. (2018) Temperature regulates NF-κB dynamics and function through timing of A20 transcription. Proceedings of the National Academy of Sciences of the United States of America, 115 (22). E5243-E5249. doi:10.1073/pnas.1803609115

Hill, Claire, Goddard, Alan, Ladds, Graham and Davey, John (2009) The cationic region of Rhes mediates its interactions with specific Gβ subunits. Cellular Physiology and Biochemistry, Vol.23 (No.1-3). pp. 1-8. doi:10.1159/000204075

Humphries, Claire, Jaganathan, Suganthi, Panniyammakal, Jeemon, Singh, Sanjeev, Goenka, Shifalika, Dorairaj, Prabhakaran, Gill, Paramjit, Greenfield, Sheila, Lilford, Richard and Manaseki-Holland, Semira (2018) Investigating clinical handover and healthcare communication for outpatients with chronic disease in India : a mixed-methods study. PLoS One, 13 (12). e0207511. doi:10.1371/journal.pone.0207511

Javed, Ibrahim, Sun, Yunxiang, Adamcik, Jozef, Wang, Bo, Kakinen, Aleksandr, Pilkington, Emily H., Ding, Feng, Mezzenga, Raffaele, Davis, Thomas P. and Ke, Pu Chun (2017) Cofibrillization of pathogenic and functional amyloid proteins with gold nanoparticles against amyloidogenesis. Biomacromolecules, 18 (12). pp. 4316-4322. doi:10.1021/acs.biomac.7b01359

Lusczek, Elizabeth R., Vincent, Tyrone, Lexcen, Daniel, Kulkarni, Vishwesh V., Mulier, Kristine and Beilman, Greg (2015) Metabolic networks in a porcine model of trauma and hemorrhagic shock demonstrate different control mechanism with carbohydrate pre-feed. BMC emergency medicine, 15 (1). pp. 1-7. 38. doi:10.1186/s12873-015-0038-1

Lusczek, Elizabeth R., Vincente, Tyrone, Lexcen, Daniel, Kulkarni, Vishwesh V., Mulier, Kristine and Beilman, Greg (2015) Metabolic networks in a porcine model of trauma and hemorrhagic shock demonstrate different control mechanism with carbohydrate pre-feed. BMC Emergency Medicine, 15 (13). pp. 1-7. doi:10.1186/s12873-015-0038-1

Masood, Khalid and Rajpoot, Nasir M. (Nasir Mahmood) (2008) Spatial analysis for colon biopsy classification from hyperspectral imagery. Annals of the BMVA, Volume 2008 (Number 4).

Melegaro, Alessia, Gay, N. J. and Medley, Graham (2004) Estimating the transmission parameters of pneumococcal carriage in households. Epidemiology and Infection, Vol.132 (No.3). pp. 433-441. doi:10.1017/S0950268804001980

Moodley, Yoshan, Linz, Bodo, Bond, Robert P., Nieuwoudt, Martin, Soodyall, Himla, Schlebusch, Carina M., Bernhöft, Steffi, Hale, J. (James), Suerbaum, Sebastian, Mugisha, Lawrence, Van der Merwe, Schalk W. and Achtman, Mark (2012) Age of the association between Helicobacter pylori and man. PLoS Pathogens, Volume 8 (Number 5). Article number e1002693. doi:10.1371/journal.ppat.1002693

Mulley, Geraldine, Beeton, Michael L., Wilkinson, Paul, Vlisidou, Isabella, Ockendon-Powell, Nina, Hapeshi, Alexia , Tobias, Nick J., Nollmann, Friederike I., Bode, Helge B., van den Elsen, Jean, ffrench-Constant, Richard H. and Waterfield, Nicholas R. (2015) From insect to man : photorhabdus sheds light on the emergence of human pathogenicity. PLoS One, 10 (12). e0144937. doi:10.1371/journal.pone.0144937

Naidoo, P., Dunbar, R., du Toit, E., van Niekerk, M., Squire, S. B., Beyers, N. and Madan, Jason (2016) Comparing laboratory costs of smear/culture and Xpert(®) MTB/RIF-based tuberculosis diagnostic algorithms. The International Journal of Tuberculosis and Lung Disease, 20 (10). pp. 1377-1385. doi:10.5588/ijtld.16.0081

The RESCUER Collaborators (Including: Naumann, David N., Hancox, James M., Raitt, James, Smith, Iain M., Crombie, Nicholas, Doughty, Heidi, Perkins, Gavin D. and Midwinter, Mark J). (2018) What fluids are given during air ambulance treatment of patients with trauma in the UK, and what might this mean for the future? Results from the RESCUER observational cohort study. BMJ Open, 8 (1). e019627. doi:10.1136/bmjopen-2017-019627

Provenzano, E., Vallier, A. -L., Champ, R., Walland, K., Bowden, S. (Sarah), Grier, Anna, Fenwick, Nicola, Abraham, J. (Janet), Iddawela, M., Caldas, C., Hiller, Louise, Dunn, Janet A. and Earl, Helena M. (2013) A central review of histopathology reports after breast cancer neoadjuvant chemotherapy in the neo-tango trial. British Journal of Cancer, Volume 108 (Number 4). pp. 866-872. doi:10.1038/bjc.2012.547

Qaiser, Talha, Tsang, Yee-Wah, Taniyama, Daiki, Sakamoto, Naoya, Nakane, Kazuaki, Epstein, D. B. A. and Rajpoot, Nasir M. (Nasir Mahmood) (2019) Fast and accurate tumor segmentation of histology images using persistent homology and deep convolutional features. Medical Image Analysis, 55 . pp. 1-14. doi:10.1016/j.media.2019.03.014

Rabbani, Naila and Thornalley, Paul J. (2015) Dicarbonyl stress in cell and tissue dysfunction contributing to ageing and disease. Biochemical and biophysical research communications, Volume 458 (Number 2). pp. 221-226. doi:10.1016/j.bbrc.2015.01.140

Ramlee, Fatanah, Afolalu, Esther F. and Tang, Nicole K. Y. (2016) Do people with chronic pain judge their sleep differently? A qualitative study. Behavioral Sleep Medicine . doi:10.1080/15402002.2016.1188393

Raza, Shan-e-Ahmed, Cheung, Linda, Shaban, Muhammad, Graham, Simon, Epstein, David M., Pelengaris, Stella, Khan, Michael and Rajpoot, Nasir M. (2018) Micro-Net : a unified model for segmentation of various objects in microscopy images. Medical Image Analysis, 52 . pp. 160-173. doi:10.1016/j.media.2018.12.003 (In Press)

Royrvik, E. C., Burgstaller, J. P. and Johnston, I. G. (2016) mtDNA diversity in human populations highlights the merit of haplotype matching in gene therapies. Molecular Human Reproduction, 22 (11). pp. 809-817. doi:10.1093/molehr/gaw062

Ryan, Elizabeth G., Vitoratou, Silia, Goldsmith, Kimberley A. and Chalder, Trudie (2018) Psychometric properties and factor structure of a long and shortened version of the cognitive and behavioural responses questionnaire. Psychosomatic Medicine, 80 (2). pp. 230-237. doi:10.1097/PSY.0000000000000536

Sanchez Silva, Victor and Hernández-Cabronero, Miguel (2018) Graph-based rate control in pathology imaging with lossless region of interest coding. IEEE Transactions on Medical Imaging . p. 1. doi:10.1109/TMI.2018.2824819 (In Press)

Sanchez Silva, Victor, Hernández-Cabronero, Miguel, Blanes, Ian, Aulí-Llinàs, Francesc , Marcellin, Michael and Serra-Sagrista, Joan (2019) Mosaic-based color-transform optimization for lossy and lossy-to-lossless compression of pathology whole-slide images. Transactions on Medical Imaging, 38 (1). pp. 21-32. doi:10.1109/TMI.2018.2852685

(2019) Testing a support programme for opioid reduction for people with chronic non-malignant pain : the I-WOTCH randomised controlled trial protocol. BMJ Open, 9 (8). e028937. doi:10.1136/bmjopen-2019-028937

Shiri, Tinevimbo, Nunes, Marta C., Adrian, Peter V., Van Niekerk, Nadia, Klugman, Keith P. and Madhi, Shabir A. (2013) Interrelationship of Streptococcus pneumoniae, Haemophilus influenzae and Staphylococcus aureus colonization within and between pneumococcal-vaccine naïve mother-child dyads. BMC Infectious Diseases, 13 . 483.

Siamantouras, Eleftherios, Hills, Claire E., Squires, Paul E. and Liu, Kuo-Kang (2016) Quantifying cellular mechanics and adhesion in renal tubular injury using single cell force spectroscopy. Nanomedicine : Nanotechnology, Biology, and Medicine, 12 (4). pp. 1013-1021. doi:10.1016/j.nano.2015.12.362

Smith, Edward M., Needs, Polly F., Manley, Grace and Green, Laura E. (2014) Global distribution and diversity of ovine-associated Staphylococcus aureus. Infection, Genetics and Evolution , Volume 22 . pp. 208-215. doi:10.1016/j.meegid.2013.09.008

Soman, Sherman, Ashok, Dhandapani, Connolly, Sally A., Cordell, Samantha J. , Taylor, Chris J. and Campbell, David I. (2010) Change in hematologic indices over time in pediatric inflammatory bowel disease treated with azathioprine. Drugs in R & D, Volume 10 (Number 4). pp. 213-217. doi:10.2165/11539930-000000000-00000

Song, Tzu-Hsi, Sanchez Silva, Victor, ElDaly, Hesham and Rajpoot, Nasir M. (2018) Simultaneous cell detection and classification in bone marrow histology images. IEEE Journal of Biomedical and Health Informatics . p. 1. doi:10.1109/JBHI.2018.2878945 (In Press)

Stinton, Chris, Geppert, Julia, Freeman, Karoline, Clarke, Aileen, Johnson, Samantha Ann, Fraser, Hannah, Sutcliffe, P. (Paul) and Taylor-Phillips, Sian (2017) Newborn screening for Tyrosinemia type 1 using succinylacetone – a systematic review of test accuracy. Orphanet Journal of Rare Diseases, 12 . 48.

Tang, Nicole K. Y., Beckwith, Philippa and Ashworth, Polly (2016) Mental defeat is associated with suicide intent in patients with chronic pain. The Clinical Journal of Pain, 32 (5). pp. 411-419. doi:10.1097/AJP.0000000000000276

Tang, Nicole K. Y., Stella, Maria Teresa, Banks, Ptolemy D. W., Sandhu, Harbinder and Berna, Chantal (2019) The effect of opioid therapy on sleep quality in patients with chronic non-malignant pain : a systematic review and exploratory meta-analysis. Sleep Medicine Reviews, 45 . pp. 105-126. doi:10.1016/j.smrv.2019.03.005 (In Press)

Toye, Francine, Seers, Kate, Hannink, Erin and Barker, Karen (2017) A mega-ethnography of eleven qualitative evidence syntheses exploring the experience of living with chronic non-malignant pain. BMC Medical Research Methodology, 17 (1). 116. doi:10.1186/s12874-017-0392-7

Trahearn, Nicholas, Epstein, D. B. A., Cree, Ian A., Snead, David and Rajpoot, Nasir M. (2017) Hyper-stain inspector : a framework for robust registration and localised co-expression analysis of multiple whole-slide images of serial histology sections. Scientific Reports, 7 . 5641.

Vivekanantham, Arani, Edwin, Claire, Pincus, Tamar, Matharu, Manjit, Parsons, Helen and Underwood, Martin (2019) The association between headache and low back pain: a systematic review. Journal of Headache and Pain , 20 . 82. doi:10.1186/s10194-019-1031-y

Whibley, Daniel, AlKandari, Nourah, Kristensen, Kaja, Barnish, Max, Rzewuska, Magdalena, Druce, Katie L. and Tang, Nicole K. Y. (2019) Sleep and pain : a systematic review of studies of mediation. Clinical Journal of Pain . doi:10.1097/AJP.0000000000000697 (In Press)

(2018) Better Outcomes for Older people with Spinal Trouble (BOOST) Trial : a randomised controlled trial of a combined physical and psychological intervention for older adults with neurogenic claudication, a protocol. BMJ Open, 8 (10). e022205. doi:10.1136/bmjopen-2018-022205

Wylde, Vikki, Beswick, Andrew, Bruce, J. (Julie), Blom, Ashley, Howells, Nicholas and Gooberman-Hill, Rachael (2018) Chronic pain after total knee arthroplasty. EFORT Open Reviews, 3 (8). pp. 461-470. doi:10.1302/2058-5241.3.180004

Conference Item

Khovanova, N. A., Zhang, Yan and Holt, Tim A. (2014) Generalised stochastic model for characterisation of subcutaneous glucose time series. In: 2014 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI), Valencia, Spain, 1-4 Jun 2014. Published in: 2014 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) pp. 484-487. doi:10.1109/BHI.2014.6864408

Report

Ng, Chee Un and Martin, Graham R. (2002) Content-description interfaces for medical imaging. University of Warwick. Department of Computer Science. (Department of Computer Science Research Report). (Unpublished)

Thesis or Dissertation

Arslanoglu, Alper (1999) Studies of the adenovirus 5 L1 gene aimed at developing L1 gene deficiencies for use in gene therapy vectors. PhD thesis, University of Warwick.

Brown, Jason Lee (2000) Expression systems for adenovirus late proteins. PhD thesis, University of Warwick.

McGee, K. C. (Kirsty Claire) (2009) The role of visfatin in adipose tissue metabolism and metabolic disease. PhD thesis, University of Warwick.

Patel, Jessica (2017) Organisation of kinetochores in human oocytes. PhD thesis, University of Warwick.

Piya, Milan K. (2013) The impact of biomarkers, nutrition and energy expenditure on metabolic disease. PhD thesis, University of Warwick.

Rodas Perez, M. C. (2012) Medical genetics in Colombia : genetic consultation and counselling in five genetic clinics. PhD thesis, University of Warwick.