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Phylogenomic analysis supports the transfer of 20 pathovars from Xanthomonas campestris into Xanthomonas euvesicatoria
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Harrison, Jamie, Hussain, Rana M. F., Aspin, Andrew, Grant, Murray R., Vicente, Joana G. and Studholme, David J. (2023) Phylogenomic analysis supports the transfer of 20 pathovars from Xanthomonas campestris into Xanthomonas euvesicatoria. Taxonomy, 3 (1). pp. 29-45. doi:10.3390/taxonomy3010003 ISSN 2673-6500.
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WRAP-phylogenomic-analysis-supports-transfer-20-pathovars-Xanthomonas-campestris-Xanthomonas-euvesicatoria-Grant-2023.pdf - Published Version - Requires a PDF viewer. Available under License Creative Commons Attribution 4.0. Download (1040Kb) | Preview |
Official URL: https://doi.org/10.3390/taxonomy3010003
Abstract
The Gram-negative bacterial genus Xanthomonas includes numerous infra-specific taxa known as pathovars, which are defined primarily on host range and disease symptoms. With the advent of molecular sequence data, many pathovars have been transferred from X. campestris into other Xanthomonas species to better harmonise taxonomy and phylogeny. We performed whole-genome shotgun sequencing on pathotype strains of the following X. campestris pathovars: blepharidis, carissae, clerodendri, convolvuli, coriandri, daturae, euphorbiae, fici, heliotropii, ionidii, lawsoniae, mirabilis, obscurae, paulliniae, pennamericanum, spermacoces, uppalii, vernoniae, viegasii and zingibericola. These genomes showed more than 98% average nucleotide identity with the type-strain of X. euvesicatoria and less than 88% with the type-strain of X. campestris. We propose the transfer of these pathovars into X. euvesicatoria and present an emended species description for X. euvesicatoria.
| Item Type: | Journal Article | |||||||||||||||||||||||||||
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| Subjects: | Q Science > QK Botany Q Science > QR Microbiology S Agriculture > SB Plant culture |
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| Divisions: | Faculty of Science, Engineering and Medicine > Science > Life Sciences (2010- ) | |||||||||||||||||||||||||||
| SWORD Depositor: | Library Publications Router | |||||||||||||||||||||||||||
| Library of Congress Subject Headings (LCSH): | Xanthomonas campestris , Bacterial diseases of plants, Plants -- Phylogeny, Phytopathogenic bacteria | |||||||||||||||||||||||||||
| Journal or Publication Title: | Taxonomy | |||||||||||||||||||||||||||
| Publisher: | MDPI AG | |||||||||||||||||||||||||||
| ISSN: | 2673-6500 | |||||||||||||||||||||||||||
| Official Date: | 6 January 2023 | |||||||||||||||||||||||||||
| Dates: |
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| Volume: | 3 | |||||||||||||||||||||||||||
| Number: | 1 | |||||||||||||||||||||||||||
| Page Range: | pp. 29-45 | |||||||||||||||||||||||||||
| DOI: | 10.3390/taxonomy3010003 | |||||||||||||||||||||||||||
| Status: | Peer Reviewed | |||||||||||||||||||||||||||
| Publication Status: | Published | |||||||||||||||||||||||||||
| Access rights to Published version: | Open Access (Creative Commons) | |||||||||||||||||||||||||||
| Date of first compliant deposit: | 13 September 2023 | |||||||||||||||||||||||||||
| Date of first compliant Open Access: | 15 September 2023 | |||||||||||||||||||||||||||
| RIOXX Funder/Project Grant: |
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