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Exploring fMRI Results Space : 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM
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Pauli, Ruth, Bowring, Alexander, Reynolds, Richard, Chen, Gang, Nichols, Thomas E. and Maumet, Camille (2016) Exploring fMRI Results Space : 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM. Frontiers in neuroinformatics, 10 . 24. doi:10.3389/fninf.2016.00024 ISSN 1662-5196.
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WRAP_1274951-wmg-050716-fninf-10-00024.pdf - Published Version - Requires a PDF viewer. Available under License Creative Commons Attribution 4.0. Download (619Kb) | Preview |
Official URL: http://dx.doi.org/10.3389/fninf.2016.00024
Abstract
Data sharing is becoming a priority in functional Magnetic Resonance Imaging (fMRI) research, but the lack of a standard format for shared data is an obstacle (Poline et al., 2012; Poldrack and Gorgolewski, 2014). This is especially true for information about data provenance, including auxiliary information such as participant characteristics and task descriptions. The three most commonly used analysis software packages [AFNI1 (Cox, 1996), FSL2 (Jenkinson et al., 2012), and SPM3 (Penny et al., 2011)] broadly conduct the same analysis, but differ in how fundamental concepts are described, and have a myriad of differences in the pre-processing and modeling steps. The practical consequence is that sharing analyzed data is further complicated by the idiosyncrasies of the particular software used.
Item Type: | Journal Article | ||||||||
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Subjects: | R Medicine > RC Internal medicine > RC0321 Neuroscience. Biological psychiatry. Neuropsychiatry | ||||||||
Divisions: | Faculty of Science, Engineering and Medicine > Science > Life Sciences (2010- ) Faculty of Science, Engineering and Medicine > Science > Statistics Faculty of Science, Engineering and Medicine > Engineering > WMG (Formerly the Warwick Manufacturing Group) |
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Library of Congress Subject Headings (LCSH): | Brain -- Magnetic resonance imaging -- Software , Neurosciences -- Data processing , Neurological equipment industry, Medical technology | ||||||||
Journal or Publication Title: | Frontiers in neuroinformatics | ||||||||
Publisher: | Frontiers Research Foundation | ||||||||
ISSN: | 1662-5196 | ||||||||
Official Date: | 5 July 2016 | ||||||||
Dates: |
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Volume: | 10 | ||||||||
Article Number: | 24 | ||||||||
DOI: | 10.3389/fninf.2016.00024 | ||||||||
Status: | Peer Reviewed | ||||||||
Publication Status: | Published | ||||||||
Access rights to Published version: | Open Access (Creative Commons) | ||||||||
Date of first compliant deposit: | 6 July 2016 | ||||||||
Date of first compliant Open Access: | 6 July 2016 | ||||||||
Funder: | International Neuroinformatics Coordinating Facility (INCF), Wellcome Trust (London, England), Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC), National Institutes of Health (U.S.) (NIH) | ||||||||
Grant number: | Intramural Research Programs ZICMH002888, (NIH) |
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