The Library
The pangenome of an agronomically important crop plant Brassica oleracea
Tools
Golicz, Agnieszka A., Bayer, Philipp E. , Barker, Guy C., Edger, Patrick P., Kim, Hye Ran, Martinez, Paula A., Chan, Chon Kit Kenneth, Severn-Ellis, Anita , McCombie, Richard , Parkin, Isobel A. P., Paterson, Andrew H., Pires, Chris , Sharpe, Andrew G., Tang, Haibao , Teakle, Graham R., Town, Christopher D., Batley, Jacqueline and Edwards, David (2016) The pangenome of an agronomically important crop plant Brassica oleracea. Nature Communications, 17 . 13390. doi:10.1038/NCOMMS13390 ISSN 2041-1723.
PDF
WRAP_ncomms13390.pdf - Published Version - Requires a PDF viewer. Available under License Creative Commons Attribution 4.0. Download (815Kb) |
|
PDF
WRAP_edwards_rp_1472919116_89.pdf - Accepted Version Embargoed item. Restricted access to Repository staff only - Requires a PDF viewer. Download (1388Kb) |
Official URL: http://dx.doi.org/10.1038/NCOMMS13390
Abstract
There is an increasing awareness that as a result of structural variation, a reference sequence representing a genome of a single individual is unable to capture all of the gene repertoire found in the species. A large number of genes affected by presence/absence and copy number variation suggest that it may contribute to phenotypic and agronomic trait diversity. Here we show by analysis of the Brassica oleracea pangenome that nearly 20% of genes are affected by presence/absence variation. Several genes displaying presence/absence variation are annotated with functions related to major agronomic traits, including disease resistance, flowering time, glucosinolate metabolism and vitamin biosynthesis.
Item Type: | Journal Article | ||||||||
---|---|---|---|---|---|---|---|---|---|
Divisions: | Faculty of Science, Engineering and Medicine > Science > Life Sciences (2010- ) | ||||||||
Journal or Publication Title: | Nature Communications | ||||||||
Publisher: | Nature Publishing Group | ||||||||
ISSN: | 2041-1723 | ||||||||
Official Date: | 11 November 2016 | ||||||||
Dates: |
|
||||||||
Volume: | 17 | ||||||||
Article Number: | 13390 | ||||||||
DOI: | 10.1038/NCOMMS13390 | ||||||||
Status: | Peer Reviewed | ||||||||
Publication Status: | Published | ||||||||
Access rights to Published version: | Open Access (Creative Commons) | ||||||||
Date of first compliant deposit: | 11 November 2016 | ||||||||
Date of first compliant Open Access: | 9 August 2018 | ||||||||
Funder: | Australian Research Council (ARC), National Science Foundation (U.S.) (NSF), Great Britain. Department for Environment, Food and Rural Affairs (DEFRA) | ||||||||
Grant number: | DP160104497 (ARC), LP140100537 (ARC), LP130100925 (ARC), LP130100925 (ARC), LP110100200 (ARC), LE140100061 (ARC), IOS 1339156 (NSF) |
Request changes or add full text files to a record
Repository staff actions (login required)
View Item |
Downloads
Downloads per month over past year