2022

Papoutsopoulou, Stamatia, Tang, Joseph, Elramli, Ahmed H., Williams, Jonathan M., Gupta, Nitika, Ikuomola, Felix I., Sheibani-Tezerji, Raheleh, Alam, Mohammad T., Hernandez-Fernaud, Juan Ramon, Caamano, Jorge H., Probert, Chris S., Muller, Werner, Duckworth, Carrie A. and Pritchard, D. Mark (2022) Nfkb2 deficiency and its impact on plasma cells and immunoglobulin expression in murine small intestinal mucosa. Gastrointestinal and Liver Physiology, 323 (4). G306-G317. doi:10.1152/ajpgi.00037.2022 ISSN 0193-1857.

2020

Sagar, Nidhi M., Duboc, Henri, Kay, Gemma L., Alam, Mohammad T., Wicaksono, Alfian, Covington, James A., Quince, Christopher , Kokkorou, Margarita, Svolos, Vaios, Palmieri, Lola J., Gerasimidis, Konstantinos, Walters, Julian R. F. and Arasaradnam, Ramesh P. (2020) The pathophysiology of bile acid diarrhoea : differences in the colonic microbiome, metabolome and bile acids. Scientific Reports, 10 (1). 20436. doi:10.1038/s41598-020-77374-7 ISSN 2045-2322.

Alam, Mohammad T., Amos, Gregory C. A., Murphy, Andrew, Murch, Simon, Wellington, E. M. H. and Arasaradnam, Ramesh P. (2020) Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels. Gut Pathogens, 12 . 2020. doi:10.1186/s13099-019-0341-6 ISSN 1757-4749.

2019

Olin-Sandoval, Viridiana, Yu, Jason Shu Lim, Miller-Fleming, Leonor, Alam, Mohammad T., Kamrad, Stephan, Correia-Melo, Clara, Haas, Robert, Segal, Joanna, Peña Navarro, David Alejandro, Herrera-Dominguez, Lucia, Méndez-Lucio, Oscar, Vowinckel, Jakob, Mülleder, Michael and Ralser, Markus (2019) Lysine harvesting is an antioxidant strategy and triggers underground polyamine metabolism. Nature, 572 (7768). pp. 249-253. doi:10.1038/s41586-019-1442-6 ISSN 0028-0836.

2018

Muter, Joanne, Alam, Mohammad T., Vrljicak, Pavle, Barros, Flavio S. V., Ruane, Peter T., Ewington, Lauren J., Aplin, John D., Westwood, Melissa and Brosens, Jan J. (2018) The glycosyltransferase EOGT regulates adropin expression in decidualizing human endometrium. Endocrinology, 159 (2). pp. 994-1004. doi:10.1210/en.2017-03064 ISSN 0013-7227.

2017

Adaikalakoteswari, Antonysunil, Vatish, Manu, Alam, Mohammad T., Ott, Sascha, Kumar, Sudhesh and Saravanan, P. (2017) Low vitamin B12 in pregnancy is associated with adipose-derived circulating miRs targeting PPARγ and insulin resistance. The Journal of Clinical Endocrinology & Metabolism, 102 (11). pp. 4200-4209. doi:10.1210/jc.2017-01155 ISSN 0021-972X.

Alam, Mohammad T., Olin-Sandoval, Viridiana, Stincone, Anna, Keller, Markus A., Zelezniak, Aleksej, Luisi, Ben and Ralser, Markus (2017) The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization. Nature Communications, 8 . 16018. doi:10.1038/ncomms16018 ISSN 2041-1723.

2016

Gostner, Johanna M., Zeisler, Johannes, Alam, Mohammad T., Gruber, Peter, Fuchs, Dietmar, Becker, Kathrin, Neubert, Kerstin, Kleinhappl, Markus, Martini, Stefan and Überall, Florian (2016) Cellular reactions to long-term volatile organic compound (VOC) exposures. Scientific Reports, 6 . 37842. ISSN 2045-2322.

Mülleder, Michael, Calvani, Enrica, Alam, Mohammad T., Wang, Richard Kangda, Eckerstorfer, Florian, Zelezniak, Aleksej and Ralser, Markus (2016) Functional metabolomics describes the yeast biosynthetic regulome. Cell, 167 (2). 553-565.e12. ISSN 1097-4172.

Paglia, Giuseppe, Stocchero, Matteo, Cacciatore, Stefano, Lai, Steven, Angel, Peggi, Alam, Mohammad T., Keller, Markus, Ralser, Markus and Astarita, Giuseppe (2016) Unbiased metabolomic investigation of Alzheimer's disease brain points to dysregulation of mitochondrial aspartate metabolism. Journal of Proteome Research, 15 (2). pp. 608-618. ISSN 1535-3893.

Alam, Mohammad T., Zelezniak, Aleksej, Mülleder, Michael, Shliaha, Pavel, Schwarz, Roland, Capuano, Floriana, Vowinckel, Jakob, Radmaneshfar, Elahe, Krüger, Antje, Calvani, Enrica, Michel, Steve, Börno, Stefan, Christen, Stefan, Patil, Kiran Raosaheb, Timmermann, Bernd, Lilley, Kathryn S. and Ralser, Markus (2016) The metabolic background is a global player in Saccharomyces gene expression epistasis. Nature microbiology, 1 . 15030. ISSN 2058-5276.

2015

Campbell, Kate, Vowinckel, Jakob, Mülleder, Michael, Malmsheimer, Silke, Lawrence, Nicola, Calvani, Enrica, Miller-Fleming, Leonor, Alam, Mohammad T., Christen, Stefan, Keller, Markus A. and Ralser, Markus (2015) Self-establishing communities enable cooperative metabolite exchange in a eukaryote. eLife, 4 . e09943. ISSN 2050-084X.

Stincone, Anna, Prigione, Alessandro, Cramer, Thorsten, Wamelink, Mirjam M C, Campbell, Kate, Cheung, Eric, Olin-Sandoval, Viridiana, Grüning, Nana-Maria, Krüger, Antje, Alam, Mohammad T., Keller, Markus A, Breitenbach, Michael, Brindle, Kevin M, Rabinowitz, Joshua D and Ralser, Markus (2015) The return of metabolism : biochemistry and physiology of the pentose phosphate pathway. Biological Reviews, 90 (3). pp. 927-63. doi:10.1111/brv.12140 ISSN 1464-7931.

Alam, Mohammad T., Manjeri, Ganesh R, Rodenburg, Richard J, Smeitink, Jan A M, Notebaart, Richard A, Huynen, Martijn, Willems, Peter H G M and Koopman, Werner J H (2015) Skeletal muscle mitochondria of NDUFS4-/- mice display normal maximal pyruvate oxidation and ATP production. Biochimica et biophysica acta, 1847 (6-7). pp. 526-33. doi:10.1016/j.bbabio.2015.02.006 ISSN 0006-3002.

Watschinger, Katrin, Keller, Markus A., McNeill, Eileen, Alam, Mohammad T., Lai, Steven, Sailer, Sabrina, Rauch, Veronika, Patel, Jyoti, Hermetter, Albin, Golderer, Georg, Geley, Stephan, Werner-Felmayer, Gabriele, Plumb, Robert S., Astarita, Giuseppe, Ralser, Markus, Channon, Keith M. and Werner, Ernst R. (2015) Tetrahydrobiopterin and alkylglycerol monooxygenase substantially alter the murine macrophage lipidome. Proceedings of the National Academy of Sciences of the United States of America, 112 (8). pp. 2431-6. ISSN 0027-8424.

2011

Alam, Mohammad Tauqee, Takano, Eriko and Breitling, Rainer (2011) Prioritizing orphan proteins for further study using phylogenomics and gene expression profiles in Streptomyces coelicolor. BMC Research Notes, 4 . p. 325. doi:10.1186/1756-0500-4-325 ISSN 1756-0500.

Medema, Marnix H, Alam, Mohammad T., Breitling, Rainer and Takano, Eriko (2011) The future of industrial antibiotic production: from random mutagenesis to synthetic biology. Bioengineered, 2 (4). pp. 230-3. ISSN 1949-1026.

Alam, Mohammad Tauqee, Medema, Marnix H, Takano, Eriko and Breitling, Rainer (2011) Comparative genome-scale metabolic modeling of actinomycetes: the topology of essential core metabolism. FEBS Letters, 585 (14). pp. 2389-94. doi:10.1016/j.febslet.2011.06.014 ISSN 0014-5793.

2010

Medema, Marnix H, Alam, Mohammad T., Heijne, Wilbert H M, Van den Berg, Marco, Müller, Ulrike, Trefzer, Axel, Bovenberg, Roel A L, Breitling, Rainer and Takano, Eriko (2010) Genome-wide gene expression changes in an industrial clavulanic acid overproduction strain of Streptomyces clavuligerus. Microbial Biotechnology, 4 (2). pp. 300-5. doi:10.1111/j.1751-7915.2010.00226.x ISSN 1751-7907.

Medema, Marnix H, Trefzer, Axel, Kovalchuk, Andriy, van den Berg, Marco, Müller, Ulrike, Heijne, Wilbert, Wu, Liang, Alam, Mohammad T., Ronning, Catherine M, Nierman, William C, Bovenberg, Roel A L, Breitling, Rainer and Takano, Eriko (2010) The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways. Genome Biology and Evolution, 2 . pp. 212-24. doi:doi: 10.1093/gbe/evq013 ISSN 1759-6653.

STREAM Consortium (Including: Alam, Mohammad T., Merlo, Maria E., Hodgson, D. A., Wellington, E. M. H., Takano, Eriko and Breitling, Rainer). (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (No.202). p. 202. doi:10.1186/1471-2164-11-202 ISSN 1471-2164.

Alam, Mohammad Tauqee, Merlo, Maria Elena, Takano, Eriko and Breitling, Rainer (2010) Genome-based phylogenetic analysis of Streptomyces and its relatives. Molecular Phylogenetics and Evolution, 54 (3). pp. 763-72. doi:doi: 10.1016/j.ympev.2009.11.019 ISSN 1055-7903.

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, 11 . p. 10. doi:DOI: 10.1186/1471-2164-11-10 ISSN 1471-2164.