2022

Talbot, Conor, Walsh, Mark David, Cutty, Stephen, Elsayed, Randa, Vlachaki, Eirini, Bruce, Ashley, Wardle, Fiona and Nelson, Andrew (2022) Eomes function is conserved between zebrafish and mouse and controls left-right organiser progenitor gene expression via interlocking feedforward loops. Frontiers in Cell and Developmental Biology, 10 . 982477. doi:10.3389/fcell.2022.982477

2021

Figiel, Daniela M., Elsayed, Randa and Nelson, Andrew (2021) Investigating the molecular guts of endoderm formation using zebrafish. Briefings in Functional Genomics, 20 (6). pp. 394-406. doi:10.1093/bfgp/elab013

2020

Osborn, Daniel P. S., Li, Kuoyu, Cutty, Stephen J., Nelson, A. C. (Andrew Christopher), Wardle, Fiona C., Hinits, Yaniv and Hughes, Simon M. (2020) Fgf-driven Tbx protein activities directly induce myf5 and myod to initiate zebrafish myogenesis. Development , 147 (8). dev184689. doi:10.1242/dev.184689

2017

Nelson, A. C. (Andrew Christopher), Mould, Arne W., Bikoff, Elizabeth K. and Robertson, Elizabeth J. (2017) Mapping the chromatin landscape and Blimp1 transcriptional targets that regulate trophoblast differentiation. Scientific Reports, 7 (1). 6793. doi:10.1038/s41598-017-06859-9

Nelson, A. C. (Andrew Christopher), Cutty, Stephen J., Gasiunas, Saule N, Deplae, Isabella, Stemple, Derek L. and Wardle, Fiona C. (2017) In vivo regulation of the zebrafish endoderm progenitor niche by T-box transcription factors. Cell Reports, 19 (13). pp. 2782-2795. doi:10.1016/j.celrep.2017.06.011

2016

Nelson, A. C., Mould, Arne W., Bikoff, Elizabeth K. and Robertson, Elizabeth J. (2016) Single-cell RNA-seq reveals cell type-specific transcriptional signatures at the maternal-foetal interface during pregnancy. Nature Communications, 7 . 11414. doi:10.1038/ncomms11414

2015

Mould, Arne W., Morgan, Marc A. J., Nelson, A. C., Bikoff, Elizabeth K. and Robertson, Elizabeth J. (2015) Blimp1/Prdm1 functions in opposition to Irf1 to maintain neonatal tolerance during postnatal intestinal maturation. PLoS Genetics, 11 (7). e1005375. e1005375. doi:10.1371/journal.pgen.1005375

Windner, S. E., Doris, R. A., Ferguson, C. M., Nelson, A. C., Valentin, G., Tan, H., Oates, A. C., Wardle, F. C. and Devoto, S. H. (2015) Tbx6, Mesp-b and Ripply1 regulate the onset of skeletal myogenesis in zebrafish. Development , 142 (6). pp. 1159-1168. doi:10.1242/dev.113431

2014

Nelson, A. C., Cutty, Stephen J, Niini, Marie, Stemple, Derek L., Flicek, Paul, Houart, Corinne, Bruce, Ashley E. E. and Wardle, Fiona C. (2014) Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression. BMC Biology, 12 (1). 81. doi:10.1186/s12915-014-0081-5

2013

Nelson, A. C. and Wardle, F. C. (2013) Conserved non-coding elements and cis regulation : actions speak louder than words. Development , 140 (7). pp. 1385-1395. doi:10.1242/dev.084459

Bogani, D., Morgan, M. A. J., Nelson, A. C., Costello, I., McGouran, J. F., Kessler, B. M., Robertson, E. J. and Bikoff, E. K. (2013) The PR/SET domain zinc finger protein Prdm4 regulates gene expression in embryonic stem cells but plays a nonessential role in the developing mouse embryo. Molecular and Cellular Biology, 33 (19). pp. 3936-3950. doi:10.1128/MCB.00498-13

2012

Jahangiri, Leila, Nelson, A. C. and Wardle, Fiona C. (2012) A cis-regulatory module upstream of deltaC regulated by Ntla and Tbx16 drives expression in the tailbud, presomitic mesoderm and somites. Developmental Biology, 371 (1). pp. 110-120. doi:10.1016/j.ydbio.2012.07.002

Nelson, A. C., Pillay, Nischalan, Henderson, Stephen, Presneau, Nadège, Tirabosco, Roberto, Halai, Dina, Berisha, Fitim, Flicek, Paul, Stemple, Derek L., Stern, Claudio D., Wardle, Fiona C. and Flanagan, Adrienne M. (2012) An integrated functional genomics approach identifies the regulatory network directed by brachyury (T) in chordoma. Journal of Pathology, 228 (3). pp. 274-285. doi:10.1002/path.4082

2011

Ramani, A. K., Calarco, J. A., Pan, Q., Mavandadi, S., Wang, Y., Nelson, A. C., Lee, L. J., Morris, Q., Blencowe, B. J., Zhen, M. and Fraser, A. G. (2011) Genome-wide analysis of alternative splicing in Caenorhabditis elegans. Genome Research, 21 (2). pp. 342-348. doi:10.1101/gr.114645.110

2009

Ramani, Arun K., Nelson, A. C., Kapranov, Philipp, Bell, Ian, Gingeras, Thomas R. and Fraser, Andrew G. (2009) High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans. Genome Biology, 10 (9). R101. doi:10.1186/gb-2009-10-9-r101