2022

Acman, Mislav, Wang, Ruobing, van Dorp, Lucy, Shaw, Liam P., Wang, Qi, Luhmann, Nina, Yin, Yuyao, Sun, Shijun, Chen, Hongbin, Wang, Hui and Balloux, Francois (2022) Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene bla NDM. Nature Communications, 13 (1). 1131. doi:10.1038/s41467-022-28819-2 ISSN 2041-1723.

2021

Luhmann, Nina, Holley, Guillaume and Achtman, Mark (2021) BlastFrost : fast querying of 100,000s of bacterial genomes in Bifrost graphs. Genome Biology, 22 . 30. doi:10.1186/s13059-020-02237-3 ISSN 1474-7596.

2018

Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Cátia, Francisco, Alexandre P. , Carriço, João André and Achtman, Mark (2018) GrapeTree : visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Research, 28 (10). pp. 1395-1404. doi:10.1101/gr.232397.117 ISSN 1088-9051.

Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Cátia, Francisco, Alexandre P., Carriço, João André and Achtman, Mark (2018) GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Research, 28 (9). pp. 1395-1404. doi:10.1101/gr.232397.117 ISSN 1088-9051.

Zhou, Zhemin, Luhmann, Nina, Alikhan, Nabil-Fareed, Quince, Christopher and Achtman, Mark (2018) Accurate reconstruction of microbial strains from metagenomic sequencing using representative reference genomes. In: RECOMB 2018 : International Conference on Research in Computational Molecular Biology, Paris, 21-24 Apr 2018. Published in: Lecture Notes in Computer Science, 10812 pp. 225-240. ISBN 9783319899299. doi:10.1007/978-3-319-89929-9_15 ISSN 0302-9743.

2017

Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J., Luhmann, Nina, Vaz, Catia, Francisco, Alexandre P., Carrico, Joao Andre and Achtman, Mark (2017) GrapeTree : visualization of core genomic relationships among 100,000 bacterial pathogens. Working Paper. BioRxiv: Cold Spring Harbour.

Zhou, Zhemin, Luhmann, Nina, Alikhan, Nabil-Fareed, Quince, Christopher and Achtman, Mark (2017) Accurate reconstruction of microbial strains using representative reference genomes. Working Paper. BioRxiv: Cold Spring Harbour.