2023

Wahab, Noorul, Toss, Michael, Miligy, Islam M., Jahanifar, Mostafa, Atallah, Nehal M., Lu, Wenqi, Graham, Simon, Bilal, Mohsin, Bhalerao, Abhir, Lashen, Ayat G., Makhlouf, Shorouk, Ibrahim, Asmaa Y., Snead, David, Minhas, Fayyaz ul Amir Afsar, Raza, Shan E. Ahmed, Rakha, Emad and Rajpoot, Nasir M. (Nasir Mahmood) (2023) AI-enabled routine H&E image based prognostic marker for early-stage luminal breast cancer. npj Precision Oncology, 7 (1). 122. doi:10.1038/s41698-023-00472-y ISSN 2397-768X.

(2023) Development and validation of artificial intelligence-based prescreening of large-bowel biopsies taken in the UK and Portugal : a retrospective cohort study. The Lancet. Digital health, 5 (11). e786-e797. doi:10.1016/S2589-7500(23)00148-6 ISSN 2589-7500.

Graham, Simon, Rahman, A. T. M. A., Munn, L., Patel, R. L., Newman, A. J., Stephen, Colin J., Colston, A. Nikitin, Edmonds, A. M., Twitchen, D. J., Markham, M. L. and Morley, Gavin (2023) Data for : Fiber-coupled Diamond Magnetometry with an Unshielded 30 pT/sqrt(Hz)) sensitivity. [Dataset]

Xu, Kesi, Jahanifar, Mostafa, Graham, Simon and Rajpoot, Nasir M. (Nasir Mahmood) (2023) Accurate segmentation of nuclear instances using a double-stage neural network. In: Medical Imaging 2023: Digital and Computational Pathology. Published in: Proceedings of SPIE - International Society for Optical Engineering (12471). doi:10.1117/12.2654173 ISSN 0277-786X.

Graham, Simon, Vu, Quoc Dang, Jahanifar, Mostafa, Raza, Shan E. Ahmed, Minhas, Fayyaz ul Amir Afsar, Snead, David and Rajpoot, Nasir M. (Nasir Mahmood) (2023) One model is all you need : multi-task learning enables simultaneous histology image segmentation and classification. Medical Image Analysis, 83 . 102685. doi:10.1016/j.media.2022.102685 ISSN 13618415.

2022

Pocock, Johnathan, Graham, Simon, Vu, Quoc Dang, Jahanifar, Mostafa, Deshpande, Srijay, Hadjigeorghiou, Giorgos, Shephard, Adam, Bashir, Raja Muhammad Saad, Bilal, Mohsin, Lu, Wenqi, Epstein, D. B. A., Minhas, Fayyaz ul Amir Afsar, Rajpoot, Nasir M. and Raza, Shan-e-Ahmed (2022) TIAToolbox as an end-to-end library for advanced tissue image analytics. Communications Medicine, 2 (1). 120. doi:10.1038/s43856-022-00186-5 ISSN 2730-664X.

(2022) DigestPath : a benchmark dataset with challenge review for the pathological detection and segmentation of digestive-system. Medical Image Analysis, 80 . 102485. doi:10.1016/j.media.2022.102485 ISSN 1361-8415.

Deshpande, Srijay, Minhas, Fayyaz ul Amir Afsar, Graham, Simon and Rajpoot, Nasir M. (Nasir Mahmood) (2022) SAFRON : Stitching Across the Frontier Network for generating colorectal cancer histology images. Medical Image Analysis, 77 . 102337. doi:10.1016/j.media.2021.102337 ISSN 1361-8415.

2021

Bilal, Mohsin, Raza, Shan-e-Ahmed, Azam, Ayesha, Graham, Simon, Ilyas, Mohammad, Cree, Ian A., Snead, David, Minhas, Fayyaz ul Amir Afsar and Rajpoot, Nasir M. (2021) Development and validation of a weakly supervised deep learning framework to predict the status of molecular pathways and key mutations in colorectal cancer from routine histology images : a retrospective study. The Lancet Digital Health, 3 (12). e763-e772. doi:10.1016/S2589-7500(21)00180-1 ISSN 2589-7500.

2020

Graham, Simon (2020) Localisation and symmetry in computational pathology. PhD thesis, University of Warwick.

Fraz, Muhammad Moazam, Khurram, S. A., Graham, Simon, Shaban, Muhammad, Hassan, M., Loya, A. and Rajpoot, Nasir M. (Nasir Mahmood) (2020) FABnet : feature attention-based network for simultaneous segmentation of microvessels and nerves in routine histology images of oral cancer. Neural Computing and Applications, 32 . pp. 9915-9928. doi:10.1007/s00521-019-04516-y ISSN 0941-0643.

2019

Graham, Simon, Vu, Quoc Dang, Raza, Shan E. Ahmed, Azam, Ayesha, Tsang, Yee Wah, Kwak, Jin Tae and Rajpoot, Nasir M. (Nasir Mahmood) (2019) Hover-Net : simultaneous segmentation and classification of nuclei in multi-tissue histology images. Medical Image Analysis, 58 . 101563. doi:10.1016/j.media.2019.101563 ISSN 1361-8415.

Lin, Huangjing , Chen, Hao , Graham, Simon, Dou, Qi , Rajpoot, Nasir M. (Nasir Mahmood) and Heng, Pheng-Ann (2019) Fast ScanNet : fast and dense analysis of multi-gigapixel whole-slide images for cancer metastasis detection. IEEE Transactions on Medical Imaging, 38 (8). pp. 1948-1958. doi:10.1109/TMI.2019.2891305 ISSN 0278-0062.

(2019) Predicting breast tumor proliferation from whole-slide images : the TUPAC16 challenge. Medical Image Analysis, 54 . pp. 111-121. doi:10.1016/j.media.2019.02.012 ISSN 1361-8415.

Vu, Quoc Dang, Graham, Simon, Kurc, Tahsin, To, Minh Nguyen Nhat, Shaban, Muhammad, Qaiser, Talha, Koohbanani, Navid Alemi, Khurram, Syed Ali, Kalpathy-Cramer, Jayashree, Zhao, Tianhao, Gupta, Rajarsi, Kwak, Jin Tae, Rajpoot, Nasir M. (Nasir Mahmood), Saltz, Joel and Farahani, Keyvan (2019) Methods for Segmentation and Classification of Digital Microscopy Tissue Images. Frontiers in Bioengineering and Biotechnology, 7 . doi:10.3389/fbioe.2019.00053 ISSN 2296-4185.

Graham, Simon, Chen, Hao, Gamper, Jevgenij, Dou, Qi, Heng, Pheng-Ann, Snead, David, Tsang, Yee Wah and Rajpoot, Nasir M. (Nasir Mahmood) (2019) MILD-Net : Minimal information loss dilated network for gland instance segmentation in colon histology images. Medical Image Analysis, 52 . pp. 199-211. doi:10.1016/j.media.2018.12.001 ISSN 1361-8415.

Raza, Shan-e-Ahmed, Cheung, Linda, Shaban, Muhammad, Graham, Simon, Epstein, D. B. A., Pelengaris, Stella, Khan, Michael and Rajpoot, Nasir M. (2019) Micro-Net : a unified model for segmentation of various objects in microscopy images. Medical Image Analysis, 52 . pp. 160-173. doi:10.1016/j.media.2018.12.003 ISSN 1361-8415.

2018

Graham, Simon, Chen, Hao, Dou, Qi, Heng, Pheng-Ann and Rajpoot, Nasir M. (Nasir Mahmood) (2018) MILD-Net : minimal information loss dilated network for gland instance segmentation in colon histology images. In: Medical Imaging with Deep Learning (MIDL), Amsterdam, 4-6 Jul 2018 (Unpublished)

Tomaszewski, John E., Gurcan, Metin N., Rajpoot, Nasir M. (Nasir Mahmood), Qaiser, Talha, Shaban, Muhammad, Graham, Simon and Khurram, Syed Ali (2018) Classification of lung cancer histology images using patch-level summary statistics. In: SPIE Medical Imaging, Houston, Texas, United States, 2/10/2018 - 2/15/2018. Published in: Proceedings Volume 10581, Medical Imaging 2018: Digital Pathology, 10581 doi:10.1117/12.2293855