2022

Legon, Laurence, Corre, Christophe, Bates, Declan G. and Mannan, Ahmad A. (2022) gcFront : a tool for determining a Pareto front of growth-coupled cell factory designs. Bioinformatics, 38 (14). pp. 3657-3659. doi:10.1093/bioinformatics/btac376 ISSN 1460-2059.

Verma, Babita K., Mannan, Ahmad A., Zhang, Fuzhong and Oyarzún, Diego A. (2022) Trade-offs in biosensor optimization for dynamic pathway engineering. ACS Synthetic Biology, 11 (1). pp. 228-240. doi:10.1021/acssynbio.1c00391 ISSN 2161-5063.

2018

Liu, Di, Mannan, Ahmad A., Han, Yichao, Oyarzún, Diego A. and Zhang, Fuzhong (2018) Dynamic metabolic control : towards precision engineering of metabolism. Journal of Industrial Microbiology & Biotechnology, 45 (7). pp. 535-543. 9. doi:10.1007/s10295-018-2013-9 ISSN 1476-5535.

2017

Mannan, Ahmad A., Liu, Di, Zhang, Fuzhong and Oyarzún, Diego A. (2017) Fundamental design principles for transcription-factor-based metabolite biosensors. ACS Synthetic Biology, 6 (10). pp. 1851-1859. doi:10.1021/acssynbio.7b00172 ISSN 2161-5063.

2016

Weiße, Andrea Y., Mannan, Ahmad A. and Oyarzún, Diego A. (2016) Signaling tug-of-war delivers the whole message. Cell Systems, 3 (5). pp. 414-416. doi:10.1016/j.cels.2016.11.003 ISSN 2405-4712.

(2016) MUFINS : multi-formalism interaction network simulator. npj Systems Biology and Applications, 2 . 16032. doi:10.1038/npjsba.2016.32 ISSN 2056-7189.

2015

Mannan, Ahmad A., Toya, Yoshihiro, Shimizu, Kazuyuki, McFadden, Johnjoe, Kierzek, Andrzej M. and Rocco, Andrea (2015) Integrating kinetic model of E. coli with genome scale metabolic fluxes overcomes its open system problem and reveals bistability in central metabolism. PLoS One, 10 (10). e0139507. doi:10.1371/journal.pone.0139507 ISSN 1932-6203.

2011

Mendum, Tom A., Newcombe, Jane, Mannan, Ahmad A., Kierzek, Andrzej M. and McFadden, Johnjoe (2011) Interrogation of global mutagenesis data with a genome scale model of Neisseria meningitidis to assess gene fitness in vitro and in sera. Genome Biology, 12 . R127. doi:10.1186/gb-2011-12-12-r127 ISSN 1474-760X.

2010

Kadir, Tuty Asmawaty Abdul, Mannan, Ahmad A., Kierzek, Andrzej M., McFadden, Johnjoe and Shimizu, Kazuyuki (2010) Modeling and simulation of the main metabolism in Escherichia coli and its several single-gene knockout mutants with experimental verification. Microbial Cell Factories, 9 . 88. doi:10.1186/1475-2859-9-88 ISSN 1475-2859.