The Library
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Number of items: 37.
Sunagawa, Junya, Komorizono, Ryo, Park, Hyeongki, Hart, William S., Thompson, Robin N., Makino, Akiko, Tomonaga, Keizo, Iwami, Shingo and Yamaguchi, Ryo (2023) Contact-number-driven virus evolution : a multi-level modeling framework for the evolution of acute or persistent RNA virus infection. PLOS Computational Biology, 19 (5). e1011173. doi:10.1371/journal.pcbi.1011173 ISSN 1553-7358.
Lovell-Read, Francesca A., Parnell, Stephen, Cunniffe, Nik J. and Thompson, Robin N. (2023) Using βsentinelβ plants to improve early detection of invasive plant pathogens. PLoS Computational Biology, 19 (2). e1010884. doi:10.1371/journal.pcbi.1010884 ISSN 1553-7358.
Thompson, R. N., Southall, E., Daon, Y., Lovell-Read, F. A., Iwami, S., Thompson, C. P. and Obolski, U. (2023) The impact of cross-reactive immunity on the emergence of SARS-CoV-2 variants. Frontiers in Immunology, 13 . 1049458. doi:10.3389/fimmu.2022.1049458 ISSN 1664-3224.
Ashby, B., Smith, C. A. and Thompson, Robin N. (2022) Non-pharmaceutical interventions and the emergence of pathogen variants. Evolution, Medicine and Public Health . eoac043. doi:10.1093/emph/eoac043
Parag, K. V., Thompson, Robin N. and Donnelly, C. A. (2022) Are epidemic growth rates more informative than reproduction numbers? Journal of the Royal Statistical Society: Series A, 185 (Supplement 1). S5-S15. doi:10.1111/rssa.12867 ISSN 0964-1998.
Cresswell, R., Augustin, D., Bouros, I., Farm, H. J., Miao, S., Ahern, A., Robinson, M., Lemenuel-Diot, A., Gavaghan, D. J., Lambert, B. and Thompson, Robin N. (2022) Heterogeneity in the onwards transmission risk between local and imported cases affects practical estimates of the time-dependent reproduction number. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 380 (2233). 20210308. doi:10.1098/rsta.2021.0308 ISSN 1364-503X.
Kaye, A. R., Hart, W. S., Bromiley, J., Iwami, S. and Thompson, Robin N. (2022) A direct comparison of methods for assessing the threat from emerging infectious diseases in seasonally varying environments. Journal of Theoretical Biology, 548 . 111195. doi:10.1016/j.jtbi.2022.111195 ISSN 0022-5193.
Zhou, Zhenwei, Kolaczyk, Eric D., Thompson, Robin N. and White, Laura F. (2022) Estimation of heterogeneous instantaneous reproduction numbers with application to characterize SARS-CoV-2 transmission in Massachusetts counties. PLoS Computational Biology, 18 (9). e1010434. doi:10.1371/journal.pcbi.1010434 ISSN 1553-7358.
Ezanno, Pauline, Picault, Sébastien, Bareille, Servane, Beaunée, Gaël, Boender, Gert Jan, Dankwa, Emmanuelle A., Deslandes, François, Donnelly, Christl A., Hagenaars, Thomas J., Hayes, Sarah, Jori, Ferran, Lambert, Sébastien, Mancini, Matthieu, Munoz, Facundo, Pleydell, David R. J., Thompson, Robin N., Vergu, Elisabeta, Vignes, Matthieu and Vergne, Timothée (2022) The African swine fever modelling challenge : model comparison and lessons learnt. Epidemics, 40 . 100615. doi:10.1016/j.epidem.2022.100615 ISSN 17554365.
Vegvari, Carolin, Abbott, Sam, Ball, Frank, Brooks-Pollock, Ellen, Challen, Robert, Collyer, Benjamin S., Dangerfield, Ciara, Gog, Julia R., Gostic, Katelyn M., Heffernan, Jane M. et al.
(2022)
Commentary on the use of the reproduction number R during the COVID-19 pandemic.
Statistical Methods in Medical Research, 31
(9).
pp. 1675-1685.
ISSN 1477-0334
doi:10.1177/09622802211037079
Akhmetzhanov, A. R., Ponce, L. and Thompson, Robin N. (2022) Emergence potential of monkeypox in the Western Pacific Region, July 2022. International Journal of Infectious Diseases, 122 . pp. 829-831. doi:10.1016/j.ijid.2022.07.044 ISSN 1201-9712.
Dankwa, Emmanuelle A., Lambert, SΓ©bastien, Hayes, Sarah, Thompson, Robin N. and Donnelly, Christl A. (2022) Stochastic modelling of African swine fever in wild boar and domestic pigs : epidemic forecasting and comparison of disease management strategies. Epidemics, 40 . 100622. doi:10.1016/j.epidem.2022.100622 ISSN 1755-4365.
Tildesley, Michael J., Vassall, Anna, Riley, Steven, Jit, Mark, Sandmann, Frank, Hill, Edward M., Thompson, Robin N., Atkins, Benjamin D., Edmunds, John, Dyson, Louise and Keeling, Matt J. (2022) Optimal health and economic impact of non-pharmaceutical intervention measures prior and post vaccination in England : a mathematical modelling study. Royal Society Open Science, 9 (8). 211746. doi:10.1098/rsos.211746 ISSN 2054-5703.
Leng, Trystan, Hill, Edward M., Keeling, Matt J., Tildesley, Michael J. and Thompson, Robin N. (2022) The effect of notification window length on the epidemiological impact of COVID-19 contact tracing mobile applications. Communications Medicine, 2 . 74. doi:10.1038/s43856-022-00143-2 ISSN 2730-664X.
Leng, Trystan, Hill, Edward M., Thompson, Robin N., Tildesley, Michael J., Keeling, Matt J. and Dyson, Louise (2022) Assessing the impact of lateral flow testing strategies on within-school SARS-CoV-2 transmission and absences : a modelling study. PLOS Computational Biology, 18 (5). e1010158. doi:10.1371/journal.pcbi.1010158 ISSN 1553-7358.
Hart, W. S., Miller, E., Andrews, N. J., Waight, P., Maini, P. K., Funk, S. and Thompson, Robin N. (2022) Generation time of the alpha and delta SARS-CoV-2 variants : an epidemiological analysis. Lancet Infectious Diseases, 22 (5). pp. 603-610. doi:10.1016/S1473-3099(22)00001-9 ISSN 1473-3099.
Karr, Jonathan, Sheriff, Rahuman S. Malik, Osborne, James, Gonzalez-Parra, Gilberton, Forgoston, Eric, Bowness, Ruth, Liu, Yaling, Thompson, Robin N., Garira, Winston , Barhak, Jacob, Rice, John, Torres, Marcella, Dobrovolny, Hana Maria, Tang, Tingting, Waites, William , Glazier, James A., Faeder, James and Kulesza, Alexander (2022) Model integration in computational biology : the role of reproducibility, credibility and utility. Frontiers in Systems Biology, 2 . 822606. doi:10.3389/fsysb.2022.822606 ISSN 2674-0702.
Leng, Trystan, Hill, Edward M., Holmes, Alexander, Southall, Emma, Thompson, Robin N., Tildesley, Michael J., Keeling, Matt J. and Dyson, Louise (2022) Quantifying pupil-to-pupil SARS-CoV-2 transmission and the impact of lateral flow testing in English secondary schools. Nature Communications, 13 (1). 1106. doi:10.1038/s41467-022-28731-9 ISSN 2041-1723.
Kretzschmar, Mirjam E., Ashby, Ben, Fearon, Elizabeth, Overton, Christopher E., Panovska-Griffiths, Jasmina, Pellis, Lorenzo, Quaife, Matthew, Rozhnova, Ganna, Scarabel, Francesca, Stage, Helena B., Swallow, Ben, Thompson, Robin N., Tildesley, Michael J. and Villela, Daniel (2022) Challenges for modelling interventions for future pandemics. Epidemics, 38 . 100546. doi:10.1016/j.epidem.2022.100546 ISSN 1755-4365.
Lovell-Read, Francesca A., Shen, Silvia and Thompson, Robin N. (2022) Estimating local outbreak risks and the effects of non-pharmaceutical interventions in age-structured populations : SARS-CoV-2 as a case study. Journal of Theoretical Biology, 535 . 110983. doi:10.1016/j.jtbi.2021.110983 ISSN 0022-5193.
Hart, W. S., Abbott, S., Endo, A. , Hellewell, J., Miller, E. , Andrews, N., Maini, P. K., Funk, S. and Thompson, Robin N. (2022) Inference of the SARS-CoV-2 generation time using UK household data. eLife, 11 . e70767. doi:10.7554/eLife.70767 ISSN 2050-084X.
Singer, B., Thompson, Robin N. and Bonsall, M. (2022) Evaluating strategies for spatial allocation of vaccines based on risk and centrality. Journal of the Royal Society, Interface, 19 (187). 20210709. doi:10.1098/rsif.2021.0709 ISSN 1742-5662.
Dangerfield, Ciara E., Abrahams, I. David, Budd, Chris, Butchers, Matt, Cates, Michael E., Champneys, Alan R., Currie, Christine S. M., Enright, Jessica, Gog, Julia R., Goriely, Alain et al.
(2022)
Getting the most out of maths : how to coordinate mathematical modelling research to support a pandemic, lessons learnt from three initiatives that were part of the COVID-19 response in the UK.
Journal of Theoretical Biology, 557
.
111332.
doi:10.1016/j.jtbi.2022.111332
ISSN 0022-5193.
Linton, N. M., Lovell-Read, F. A., Southall, E., Lee, H., Akhmetzhanov, A. R., Thompson, Robin N. and Nishiura, H. (2022) When do epidemics end? Scientific insights from mathematical modelling studies. Centaurus, 64 (1). pp. 31-60. doi:10.1484/J.CNT.5.130125 ISSN 0008-8994.
Glennon, Emma E., Bruijning, Marjolein, Lessler, Justin, Miller, Ian F., Rice, Benjamin L., Thompson, Robin N., Wells, Konstans and Metcalf, C. Jessica E. (2021) Challenges in modeling the emergence of novel pathogens. Epidemics, 37 . 100516. doi:10.1016/j.epidem.2021.100516 ISSN 1755-4365.
Sachak-Patwa, Rahil, Byrne, Helen M., Dyson, Louise and Thompson, Robin N. (2021) The risk of SARS-CoV-2 outbreaks in low prevalence settings following the removal of travel restrictions. Communications Medicine, 1 . 39. doi:10.1038/s43856-021-00038-8 ISSN 2730-664X.
Griette, Quentin, Liu, Zhihua, Magal, Pierre and Thompson, Robin N. (2021) Real-time prediction of the end of an epidemic wave : COVID-19 in China as a case-study. In: Kumar Murty, V. and Wu, Jianhong, (eds.) Mathematics of Public Health: Proceedings of the Seminar on the Mathematical Modelling of COVID-19. Fields Institute Communications, 85 . Switzerland: Springer, Cham, pp. 173-195. ISBN 9783030850524
Akhmetzhanov, Andrei R., Jung, Sung-mok, Cheng, Hao-Yuan and Thompson, Robin N. (2021) A hospital-related outbreak of SARS-CoV-2 associated with a novel variant Cal.20C (B.1.429) in Taiwan : transmission potential and outbreak containment under intensified contact tracing, JanuaryβFebruary 2021. International Journal of Infectious Diseases, 110 . pp. 15-20. doi:10.1016/j.ijid.2021.06.028 ISSN 1201-9712.
Gog, Julia R., Hill, Edward M., Danon, Leon and Thompson, Robin N. (2021) Vaccine escape in a heterogeneous population : insights for SARS-CoV-2 from a simple model. Royal Society Open Science, 8 (7). 210530. doi:10.1098/rsos.210530 ISSN 2054-5703.
Hale, Tom, Angrist, Noam, Hale, Andrew, Kira, Beatriz, Saptarshi, Majumdar, Petherick, Anna, Phillips, Toby, Sridhar, Devi, Thompson, Robin N., Webster, Samuel and Zhang, Yuxi (2021) Government responses and COVID-19 deaths : global evidence across multiple pandemic waves. PLoS One, 16 (7). e0253116. doi:10.1371/journal.pone.0253116 ISSN 1932-6203.
Iwanami, Shoya, Ejima, Keisuke, Kim, Kwang Su, Noshita, Koji, Fujita, Yasuhisa, Miyazaki, Taiga, Kohno, Shigeru, Miyazaki, Yoshitsugu, Morimoto, Shimpei, Nakaoka, Shinji et al.
(2021)
Detection of significant antiviral drug effects on COVID-19 with reasonable sample sizes in randomized controlled trials : a modeling study.
PLoS Medicine, 18
(7).
e1003660.
doi:10.1371/journal.pmed.1003660
ISSN 1549-1277.
Thompson, Robin N., Hill, Edward M. and Gog, Julia R. (2021) SARS-CoV-2 incidence and vaccine escape. The Lancet Infectious Diseases, 21 (7). pp. 913-914. doi:10.1016/S1473-3099(21)00202-4 ISSN 1473-3099.
Southall, Emma, Holmes, Alexander, Hill, Edward M., Atkins, Benjamin D., Leng, Trystan, Thompson, Robin N., Dyson, Louise, Keeling, Matthew James and Tildesley, Michael J. (2021) An analysis of school absences in England during the COVID-19 pandemic. BMC Medicine, 19 (1). 137. doi:10.1186/s12916-021-01990-x ISSN 1741-7015.
Hart, William Stephen, Maini, Philip K. and Thompson, Robin N. (2021) High infectiousness immediately before COVID-19 symptom onset highlights the importance of continued contact tracing. eLife, 10 . e65534. doi:10.7554/eLife.65534 ISSN 2050-084X.
Sugden, Bill, Kim, Kwang Su, Ejima, Keisuke, Iwanami, Shoya, Fujita, Yasuhisa, Ohashi, Hirofumi, Koizumi, Yoshiki, Asai, Yusuke, Nakaoka, Shinji, Watashi, Koichi, Aihara, Kazuyuki, Thompson, Robin N., Ke, Ruian, Perelson, Alan S. and Iwami, Shingo (2021) A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV, and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS-CoV-2. PLoS Biology, 19 (3). e3001128. doi:10.1371/journal.pbio.3001128 ISSN 1545-7885.
Sachak-Patwa, Rahil, Byrne, Helen M. and Thompson, Robin N. (2021) Accounting for cross-immunity can improve forecast accuracy during influenza epidemics. Epidemics, 34 . 100432. doi:10.1016/j.epidem.2020.100432 ISSN 1755-4365.
Lovell-Read, Francesca A., Funk, Sebastian, Obolski, Uri, Donnelly, Christl A. and Thompson, Robin N. (2021) Interventions targeting nonsymptomatic cases can be important to prevent local outbreaks : SARS-CoV-2 as a case-study. Journal of The Royal Society Interface, 18 (178). 20201014. doi:10.1098/rsif.2020.1014 ISSN 1742-5689.
This list was generated on Thu Apr 18 15:00:33 2024 BST.