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Number of items: 104.
Muscatt, George, Hilton, Sally, Raguideau, Sébastien, Teakle, Graham R., Lidbury, Ian, Wellington, Elizabeth M. H., Quince, Christopher, Millard, Andrew D., Bending, Gary D. and Jameson, Eleanor (2022) Crop management shapes the diversity and activity of DNA and RNA viruses in the rhizosphere. Microbiome, 10 (1). 181. doi:10.1186/s40168-022-01371-3 ISSN 2049-2618.
Ijaz, Umer Zeeshan, Gundogdu, Ozan, Keating, Ciara, Eekert, Miriam van, Gibson, Walter, Parkhill, Julian, Abilahi, Faraji, Liseki, Benard, Nguyen, Viet-Anh, Sudgen, Steven, Quince, Christopher , Ensink, Jeroen H. J., Torondel, Belen and Walker, Alan W. (2022) Analysis of pit latrine microbiota reveals depth-related variation in composition, and key parameters and taxa associated with latrine fill-up rate. Frontiers in Microbiology, 13 . 960747. doi:10.3389/fmicb.2022.960747 ISSN 1664-302X.
Mahé, Frédéric, Czech, Lucas, Stamatakis, Alexandros, Quince, Christopher , de Vargas, Colomban, Dunthorn, Micah and Rognes, Torbjørn (2022) Swarm v3 : towards tera-scale amplicon clustering. Bioinformatics, 38 (1). pp. 267-269. doi:10.1093/bioinformatics/btab493 ISSN 1367-4803.
Borsetto, Chiara, Raguideau, Sébastien, Travis, Emma Rachel, Kim, Dae-Wi, Lee, Do-Hoon, Bottrill, Andrew R., Stark, Richard Jan, Song, Lijiang, Cha, Chang-Jun, Pearson, Jonathan M., Quince, Christopher, Singer, Andrew C. and Wellington, Elizabeth M. H. (2021) Impact of sulfamethoxazole on a riverine microbiome. Water Research, 201 . 117382. doi:10.1016/j.watres.2021.117382 ISSN 0043-1354.
Quince, Christopher , Nurk, Sergey, Raguideau, Sébastien, James, Robert, Soyer, Orkun S., Summers, J. Kimberly, Limasset, Antoine, Eren, A. Murat, Chikhi, Rayan and Darling, Aaron E. (2021) STRONG : metagenomics strain resolution on assembly graphs. Genome Biology, 22 (1). 214. doi:10.1186/s13059-021-02419-7 ISSN 1474-7596.
Sagar, Nidhi M., Duboc, Henri, Kay, Gemma L., Alam, Mohammad T., Wicaksono, Alfian, Covington, James A., Quince, Christopher , Kokkorou, Margarita, Svolos, Vaios, Palmieri, Lola J., Gerasimidis, Konstantinos, Walters, Julian R. F. and Arasaradnam, Ramesh P. (2020) The pathophysiology of bile acid diarrhoea : differences in the colonic microbiome, metabolome and bile acids. Scientific Reports, 10 (1). 20436. doi:10.1038/s41598-020-77374-7 ISSN 2045-2322.
Sheridan, Paul O., Raguideau, Sébastien, Quince, Christopher, Holden, Jennifer, Thames Consortium, , Zhang, Lihong, Gubry-Rangin, Cécile and Williams, Tom A. (2020) Gene duplication drives genome expansion in a major lineage of Thaumarchaeota. Nature Communications, 11 (1). 5494. doi:10.1038/s41467-020-19132-x ISSN 2041-1723.
Lee, Kihyun, Kim, Dae-Wi, Lee, Do-Hoon, Kim, Yong-Seok, Bu, Ji-Hye, Cha, Ju-Hee, Thawng, Cung Nawl, Hwang, Eun-Mi, Seong, Hoon Je, Sul, Woo Jun, Wellington, Elizabeth M. H., Quince, Christopher and Cha, Chang-Jun (2020) Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance. Microbiome, 8 (1). 2. doi:10.1186/s40168-019-0774-7 ISSN 2049-2618.
Svolos, Vaios, Hansen, Richard, Nichols, Ben, Quince, Christopher, Ijaz, Umer Z., Papadopoulou, Rodanthi T., Edwards, Christine A., Watson, David, Alghamdi, Adel, Brejnrod, Asker et al.
(2019)
Treatment of active Crohn’s disease with an ordinary food-based diet that replicates exclusive enteral nutrition.
Gastroenterology, 156
(5).
1354-1367.e6.
doi:10.1053/j.gastro.2018.12.002
ISSN 0016-5085.
Pasolli, Edoardo, Asnicar, Francesco, Manara, Serena, Zolfo, Moreno, Karcher, Nicolai, Armanini, Federica, Beghini, Francesco, Manghi, Paolo, Tett, Adrian, Ghensi, Paolo, Collado, Maria Carmen, Rice, Benjamin L., DuLong, Casey, Morgan, Xochitl C., Golden, Christopher D., Quince, Christopher, Huttenhower, Curtis and Segata, Nicola (2019) Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle. CELL, 176 (3). 649-662.e20. doi:10.1016/j.cell.2019.01.001 ISSN 0092-8674.
Zhou, Zhemin, Lundstrøm, Inge, Tran-Dien, Alicia, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Christophersen, Axel, Quince, Christopher , Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon Y. W., Gilbert, M. Thomas P. and Achtman, Mark (2018) Pan-genome analysis of ancient and modern Salmonella enterica demonstrates genomic stability of the invasive Para C lineage for millennia. Current Biology, 28 (15). pp. 2420-2428. doi:10.1016/j.cub.2018.05.058 ISSN 0960-9822.
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica. Archive package of additional figures, tables and data. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 1. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 2. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 3. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 4. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 5. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 6. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 7. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Concoct 8. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 1. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 2. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 3. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 4. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 5. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 6. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 7. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC Pan-genome 8. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 1. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 2. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 3. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ParaC genome SNPs 4. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Salmonella supertree 1. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Salmonella supertree 2. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: Salmonella supertree 3. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ancestral reconstruction 1. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: ancestral reconstruction 2. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 1. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 2. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 3. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: date estimation 4. [Dataset]
Zhou, Zhemin, Lundstrøm, Inge, Dien, Alicia Tran, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Quince, Christopher , Christophersen, Axel, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon, Gilbert, M. Thomas P. and Achtman, Mark (2018) Data for Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica: workflow. [Dataset]
Zhou, Zhemin, Luhmann, Nina, Alikhan, Nabil-Fareed, Quince, Christopher and Achtman, Mark (2018) Accurate reconstruction of microbial strains from metagenomic sequencing using representative reference genomes. In: RECOMB 2018 : International Conference on Research in Computational Molecular Biology, Paris, 21-24 Apr 2018. Published in: Lecture Notes in Computer Science, 10812 pp. 225-240. ISBN 9783319899299. doi:10.1007/978-3-319-89929-9_15 ISSN 0302-9743.
Joyce, Aoife, Ijaz, Umer Z., Nzeteu, Corine, Vaughan, Aoife, Shirran, Sally L., Botting, Catherine H., Quince, Christopher, O’Flaherty, Vincent and Abram, Florence (2018) Linking Microbial Community Structure and Function During the Acidified Anaerobic Digestion of Grass. Frontiers in Microbiology, 9 . 540. doi:10.3389/fmicb.2018.00540 ISSN 1664-302X.
Heidrich, E. S., Dolfing, J., Wade, M. J., Sloan, W. T., Quince, C. and Curtis, T. P. (2018) Temperature, inocula and substrate : contrasting electroactive consortia, diversity and performance in microbial fuel cells. Bioelectrochemistry, 119 . pp. 43-50. doi:10.1016/j.bioelechem.2017.07.006 ISSN 1567-5394.
Zhou, Zhemin, Luhmann, Nina, Alikhan, Nabil-Fareed, Quince, Christopher and Achtman, Mark (2017) Accurate reconstruction of microbial strains using representative reference genomes. Working Paper. BioRxiv: Cold Spring Harbour.
Thompson, Luke R., Sanders, Jon G., McDonald, Daniel, Amir, Amnon, Ladau, Joshua, Locey, Kenneth J., Prill, Robert J., Tripathi, Anupriya, Gibbons, Sean M., Ackermann, Gail et al.
(2017)
A communal catalogue reveals Earth’s multiscale microbial diversity.
Nature
.
doi:10.1038/nature24621
ISSN 0028-0836.
Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, Majda, Stephan, Fiedler, Jessika, Dahms, Eik et al.
(2017)
Critical assessment of metagenome interpretation - a benchmark of metagenomics software.
Nature Methods, 14
(11).
pp. 1063-1071.
doi:10.1038/nmeth.4458
ISSN 1548-7091.
Quince, Christopher , Delmont, Tom O., Raguideau, Sébastien, Alneberg, Johannes, Darling, Aaron E., Collins, Gavin and Eren, A. Murat (2017) DESMAN : a new tool for de novo extraction of strains from metagenomes. Genome Biology, 18 (1). doi:10.1186/s13059-017-1309-9 ISSN 1474-7596.
Quince, Christopher, Walker, Alan W., Simpson, Jared T., Loman, Nicholas J. and Segata, Nicola (2017) Shotgun metagenomics, from sampling to analysis. Nature Biotechnology, 35 (9). pp. 833-844. doi:10.1038/nbt.3935 ISSN 1087-0156.
Fonseca, V. G., Sinniger, F., Gaspar, J. M., Quince, C., Creer, S., Power, Deborah M., Peck, Lloyd S. and Clark, Melody S. (2017) Revealing higher than expected meiofaunal diversity in Antarctic sediments : a metabarcoding approach. Scientific Reports, 7 (1). doi:10.1038/s41598-017-06687-x ISSN 2045-2322.
Svolos, V., Hansen, R., Ijaz, U. Z., Quince, Christopher, Watson, D., Alghamdi, A., Brejnrod, A., Ansalone, C., Klopfleisch, R., Milling, S., Gaya, D. R., Russell, R. K. and Gerasimidis, K. (2017) AODTH-007 Dietary manipulation of the healthy human and colitic rat gut microbiome by cd-treat diet and exclusive enteral nutrition; a proof of concept study. In: British Society of Gastroenterology, Annual General Meeting, 19–22 June 2017. Published in: Gut, 66 (Suppl 2). A202. ISBN 0017-5749.
Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Droege, Johannes, Gregor, Ivan, Majda, Stephan, Fiedler, Jessika, Dahms, Eik et al.
(2017)
Critical assessment of metagenome interpretation − a benchmark of computational metagenomics software.
Working Paper.
bioRxiv:
Cold Spring Harbour Laboratory.
(Unpublished)
Castelino, M., Tutino, M., Moat, J., Ijaz, U. Z., Parslew, R., Al-Sharqi, A., Warren, R. B., Quince, Christopher, Ho, P., Upton, M., Eyre, S. and Barton, A. (2017) AB0115C Comparison of the bacterial stool microbiota in established psoriatic arthritis (PSA) and psoriasis (PSC) - exploratory analysis of pilot data. In: Annual European Congress of Rheumatology, 14–17 June 2017. Published in: Annals of the Rheumatic Diseases, 76 (Suppl 2). p. 1087. ISSN 0003-4967.
Connelly, Stephanie, Shin, Seung G., Dillon, Robert J., Ijaz, Umer Z., Quince, Christopher, Sloan, William T. and Collins, Gavin (2017) Bioreactor scalability : laboratory-scale bioreactor design influences performance, ecology, and community physiology in expanded granular sludge bed bioreactors. Frontiers in Microbiology, 8 . 664. doi:10.3389/fmicb.2017.00664 ISSN 1664-302X.
Ijaz, Ali Z., Jeffries, Thomas, Quince, Christopher, Hamonts, Kelly and Singh, Brajesh (2017) TaxaSE : exploiting evolutionary conservation within 16S rDNA sequences for enhanced taxonomic annotation. Working Paper. PeerJ Preprints.
Harris, Keith, Parsons, Todd L., Ijaz, Umer Z., Lahti, Leo, Holmes, Ian and Quince, Christopher (2017) Linking statistical and ecological theory : Hubbell's unified neutral theory of biodiversity as a hierarchical Dirichlet process. Proceedings of the IEEE , 105 (3). pp. 516-529. doi:10.1109/JPROC.2015.2428213 ISSN 0018-9219.
Ijaz, Umer Zeeshan, Quince, Christopher, Hanske, Laura, Loman, Nick, Calus, Szymon T., Bertz, Martin, Edwards, Christine A., Gaya, Daniel R., Hansen, Richard, McGrogan, Paraic, Russell, Richard K. and Gerasimidis, Konstantinos (2017) The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred. PLoS One, 12 (2). e0172605. doi:10.1371/journal.pone.0172605 ISSN 1932-6203.
Zhou, Zhemin, Lundstrøm, Inge, Tran-Dien, Alicia, Duchêne, Sebastián, Alikhan, Nabil-Fareed, Sergeant, Martin J., Langridge, Gemma, Fotakis, Anna K., Nair, Satheesh, Stenøien, Hans K., Hamre, Stian S., Casjens, Sherwood, Christophersen, Axel, Quince, Christopher, Thomson, Nicholas R., Weill, François-Xavier, Ho, Simon Y. W., Gilbert, M. Thomas P. and Achtman, Mark (2017) Millennia of genomic stability within the invasive Para C Lineage of Salmonella enterica. Working Paper. BioRxiv: Cold Spring Harbour.
Svolos, V., Hansen, R., Ijaz, U. Z., Quince, Christopher, Watson, D., Alghamdi, A., Brejnrod, A., Ansalone, C., Milling, S., Gaya, D., Russell, R. and Gerasimidis, K. (2017) DOP008 Dietary manipulation of the healthy human and colitic murine gut microbiome by CD-TREAT diet and exclusive enteral nutrition; a proof of concept study. In: 12th Congress of ECCO, Barcelona, Spain, 15-18 Feb 2017. Published in: Journal of Crohn's and Colitis, 11 (Suppl_1). S29-S30. doi:10.1093/ecco-jcc/jjx002.045 ISSN 1873-9946.
Sinclair, Lucas, Ijaz, Umer Z., Jensen, Lars Juhl, Coolen, Marco J.L., Gubry-Rangin, Cecile, Chroňáková, Alica, Oulas, Anastasis, Pavloudi, Christina, Schnetzer, Julia, Weimann, Aaron, Ijaz, Ali, Eiler, Alexander, Quince, Christopher and Pafilis, Evangelos (2016) Seqenv : linking sequences to environments through text mining. PeerJ, 4 . e2690. doi:10.7717/peerj.2690 ISSN 2167-8359.
Widder, Stefanie, Allen, Rosalind, Pfeiffer, Thomas, Curtis, Thomas P., Wiuf, Carsten, Sloan, William T., Cordero, Otto X., Brown, Sam P., Momeni, Babak, Shou, Wenying et al.
(2016)
Challenges in microbial ecology : building predictive understanding of community function and dynamics.
The ISME Journal, 2016
(10).
pp. 2557-2568.
doi:10.1038/ismej.2016.45
ISSN 1751-7362.
Ray, Jessica L., Althammer, Julia, Skaar, Katrine S., Simonelli, Paolo, Larsen, Aud, Stoecker, Diane, Sazhin, Andrey, Ijaz, Umer Z., Quince, Christopher, Nejstgaard, Jens C., Frischer, Marc, Pohnert, Georg and Troedsson, Christofer (2016) Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities. Molecular Ecology, 25 (21). pp. 5585-5602. doi:10.1111/mec.13844 ISSN 0962-1083.
Rognes, Torbjørn, Flouri, Tomáš, Nichols, Ben, Quince, Christopher and Mahé, Frédéric (2016) VSEARCH : a versatile open source tool for metagenomics. PeerJ, 4 . e2584. doi:10.7717/peerj.2584 ISSN 2167-8359.
Cho, Si-Kyung, Kim, Dong-Hoon, Quince, Christopher, Im, Wan-Taek, Oh, Sae-Eun and Shin, Seung Gu (2016) Low-strength ultrasonication positively affects methanogenic granules toward higher AD performance : implications from microbial community shift. Ultrasonics Sonochemistry, 32 . pp. 198-203. doi:10.1016/j.ultsonch.2016.03.010 ISSN 1350-4177.
Quince, Christopher, Connelly, Stephanie, Raguideau, Sebastien, Alneberg, Johannes, Shin, Seung Gu, Collins, Gavin and Eren, A. Murat (2016) De novo extraction of microbial strains from metagenomes reveals intra-species niche partitioning. Working Paper. bioRxiv: Cold Spring Harbour Laboratory. (Unpublished)
Nichols, Ben and Quince, Christopher (2016) Simera : modelling the PCR process to simulate realistic chimera formation. Working Paper. bioRxiv: Cold Spring Harbour Laboratory. (Unpublished)
Sagar, Nidhi M., Kay, Gemma L., O’Connell, N., Nwokolo, Chuka U., Bardhan, Karna Dev, Quince, Christopher, Pallen, Mark J. and Arasaradnam, Ramesh P. (2016) PWE-061 Dysbiosis in patients with bile acid diarrhoea (BAD) demonstrated using 16S RNA gene sequencing. In: British Society of Gastroenterology, Annual General Meeting, 20–23 Jun 2016. Published in: Gut, 65 (Supplement 1). A168-A168. doi:10.1136/gutjnl-2016-312388.307 ISSN 0017-5749.
Gregor, Ivan, Dröge, Johannes, Schirmer, Melanie, Quince, Christopher and McHardy, Alice C. (2016) PhyloPythiaS+ : a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes. PeerJ, 4 . e1603. doi:10.7717/peerj.1603 ISSN 2167-8359.
Gerasimidis, Konstantinos, Bertz, Martin, Quince, Christopher, Brunner, Katja, Bruce, Alanna, Combet, Emilie, Calus, Szymon, Loman, Nick and Ijaz, Umer Zeeshan (2016) The effect of DNA extraction methodology on gut microbiota research applications. BMC Research Notes, 9 (1). 365. doi:10.1186/s13104-016-2171-7 ISSN 1756-0500.
Gerasimidis, Konstantinos, Ijaz, Umer Z., Edwards, Christine, Russell, Richard K., Quince, Christopher and Hansen, Richard (2016) Response to Kaakoush et al. The American Journal of Gastroenterology, 111 (7). pp. 1033-1034. ISSN 0002-9270 doi:10.1038/ajg.2016.169
Schirmer, Melanie, D’Amore, Rosalinda, Ijaz, Umer Z., Hall, Neil and Quince, Christopher (2016) Illumina error profiles : resolving fine-scale variation in metagenomic sequencing data. BMC Bioinformatics, 17 (1). pp. 1-15. 125. doi:10.1186/s12859-016-0976-y ISSN 1471-2105.
Torondel, Belen, Ensink, Jeroen H.J., Gundogdu, Ozan, Ijaz, Umer Zeeshan, Parkhill, Julian, Abdelahi, Faraji, Nguyen, Viet-Anh, Sudgen, Steven, Gibson, Walter, Walker, Alan W. and Quince, Christopher (2016) Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines. Microbial Biotechnology, 9 (2). pp. 209-223. doi:10.1111/1751-7915.12334 ISSN 1751-7907.
Haig, Sarah-Jane, Gauchotte-Lindsay, Caroline, Collins, Gavin and Quince, Christopher (2016) Bioaugmentation mitigates the impact of estrogen on coliform-grazing protozoa in slow sand filters. Environmental Science & Technology, 50 (6). pp. 3101-3110. doi:10.1021/acs.est.5b05027 ISSN 0013-936X.
Svolos, V., Hansen, R., Hughes, K., Ijaz, U. Z., Quince, Christopher, Gaya, D., Russell, R. and Gersimidis, K. (2016) OP018. The impact of ‘Crohn’s Disease-TReatment-with-EATing’ diet (CD-TREAT diet) and exclusive enteral nutrition on healthy gut bacteria metabolism. In: UNSPECIFIED. Published in: Journal of Crohn's and Colitis, 10 (supplement 1). S14.2-S15. doi:10.1093/ecco-jcc/jjw019.017 ISSN 1873-9946.
D’Amore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G., Gregory, Richard, Darby, Alistair C., Shakya, Migun, Podar, Mircea, Quince, Christopher and Hall, Neil (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17 (1). doi:10.1186/s12864-015-2194-9 ISSN 1471-2164.
Ocejo, M., Oporto, B., Lanzen, A., Quince, Christopher and Hurtado, A. (2016) 16S rRNA gene-based characterization of the chicken caecal microbiome across age. In: 4th World Congress on Targeting Microbiota 2016 (International Society of Microbiota), , Paris, 17-19 Oct 2016. Published in: Journal of International Society of Microbiota , 3 (1).
Jones, Oliver A. H., Lear, Gavin, Welji, Aalim M., Collins, Gavin and Quince, Christopher (2016) Community metabolomics in environmental microbiology. In: Beale, D. and Kouremenos, K. and Palombo, E., (eds.) Microbial Metabolomics. Cham: Springer, pp. 199-224. ISBN 9783319463247
Bowen, Emma J., Parsons, Todd L., Curtis, Thomas P., Plotkin, Joshua B. and Quince, Christopher (2016) Integrating theory and experiment to explain the breakdown of population synchrony in a complex microbial community. Working Paper. Coventry, UK : University of Warwick, Warwick Medical School. (Unpublished)
Oton, Eduard Vico, Quince, Christopher, Nicol, Graeme W., Prosser, James I. and Gubry-Rangin, Cécile (2016) Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota. The ISME Journal, 10 (1). pp. 85-96. doi:10.1038/ismej.2015.101 ISSN 1751-7362.
Mahé, Frédéric, Rognes, Torbjørn, Quince, Christopher, de Vargas, Colomban and Dunthorn, Micah (2015) Swarm v2 : highly-scalable and high-resolution amplicon clustering. PeerJ, 3 . e1420. doi:10.7717/peerj.1420 ISSN 2167-8359.
Quince, Christopher, Ijaz, Umer Zeeshan, Loman, Nick, Eren, A. Murat, Saulnier, Delphine, Russell, Julie, Haig, Sarah J., Calus, Szymon T., Quick, Joshua, Barclay, Andrew, Bertz, Martin, Blaut, Michael, Hansen, Richard, McGrogan, Paraic, Russell, Richard K., Edwards, Christine A. and Gerasimidis, Konstantinos (2015) Extensive modulation of the fecal metagenome in children with Crohn’s Disease during exclusive enteral nutrition. The American Journal of Gastroenterology, 110 (12). pp. 1718-1729. doi:10.1038/ajg.2015.357 ISSN 0002-9270.
Haig, Sarah-Jane, Quince, Christopher, Davies, Robert L., Dorea, Caetano C. and Collins, Gavin (2015) The relationship between microbial community evenness and function in slow sand filters. mBio, 6 (5). e00729-15. doi:10.1128/mBio.00729-15 ISSN 2150-7511.
Eren, A. Murat, Esen, Özcan C., Quince, Christopher, Vineis, Joseph H., Morrison, Hilary G., Sogin, Mitchell L. and Delmont, Tom O. (2015) Anvi’o: an advanced analysis and visualization platform for ‘omics data. PeerJ, 3 . e1319. doi:10.7717/peerj.1319 ISSN 2167-8359.
Chroňáková, Alica, Schloter-Hai, Brigitte, Radl, Viviane, Endesfelder, David, Quince, Christopher, Elhottová, Dana, Šimek, Miloslav and Schloter, Michael (2015) Correction : Response of archaeal and bacterial soil communities to changes associated with outdoor cattle overwintering. PLoS One, 10 (9). e0137815. doi:10.1371/journal.pone.0137815 ISSN 1932-6203.
Moreno-Hagelsieb, Gabriel, Chroňáková, Alica, Schloter-Hai, Brigitte, Radl, Viviane, Endesfelder, David, Quince, Christopher, Elhottová, Dana, Šimek, Miloslav and Schloter, Michael (2015) Response of archaeal and bacterial soil communities to changes associated with outdoor cattle overwintering. PLoS One, 10 (8). e0135627. doi:10.1371/journal.pone.0135627 ISSN 1932-6203.
Schirmer, Melanie, Ijaz, Umer Z., D'Amore, Rosalinda, Hall, Neil, Sloan, William T. and Quince, Christopher (2015) Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. Nucleic Acids Research, 43 (6). e37-e37. doi:10.1093/nar/gku1341 ISSN 0305-1048.
Haig, Sarah-Jane, Schirmer, Melanie, D'Amore, Rosalinda, Gibbs, Joseph, Davies, Robert L., Collins, Gavin and Quince, Christopher (2015) Stable-isotope probing and metagenomics reveal predation by protozoa drives E. coli removal in slow sand filters. The ISME Journal, 9 . pp. 797-808. doi:10.1038/ismej.2014.175 ISSN 1751-7362.
Schirmer, M., Sloan, W. T. and Quince, Christopher (2014) Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes. Briefings in Bioinformatics, 15 (3). pp. 431-442. doi:10.1093/bib/bbs081 ISSN 1467-5463.
Mahé, Frédéric, Rognes, Torbjørn, Quince, Christopher, de Vargas, Colomban and Dunthorn, Micah (2014) Swarm : robust and fast clustering method for amplicon-based studies. PeerJ, 2 . e593. doi:10.7717/peerj.593 ISSN 2167-8359.
Haig, Sarah-Jane, Quince, Christopher, Davies, Robert L., Dorea, Caetano C. and Collins, Gavin (2014) Replicating the microbial community and water quality performance of full-scale slow sand filters in laboratory-scale filters. Water Research, 61 . pp. 141-151. doi:10.1016/j.watres.2014.05.008 ISSN 0043-1354.
Widder, S., Besemer, K., Singer, G. A., Ceola, S., Bertuzzo, E., Quince, Christopher, Sloan, W. T., Rinaldo, A. and Battin, T. J. (2014) Fluvial network organization imprints on microbial co-occurrence networks. Proceedings of the National Academy of Sciences of the United States of America, 111 (35). pp. 12799-12804. doi:10.1073/pnas.1411723111 ISSN 0027-8424.
Singh, Brajesh K., Quince, Christopher, Macdonald, Catriona A., Khachane, Amit, Thomas, Nadine, Al-Soud, Waleed Abu, Sørensen, Søren J., He, Zhili, White, Duncan, Sinclair, Alex, Crooks, Bill, Zhou, Jizhong and Campbell, Colin D. (2014) Loss of microbial diversity in soils is coincident with reductions in some specialized functions. Environmental Microbiology, 16 (8). pp. 2408-2420. doi:10.1111/1462-2920.12353 ISSN 1462-2912.
Wilhelm, Linda, Besemer, Katharina, Fasching, Christina, Urich, Tim, Singer, Gabriel A., Quince, Christopher and Battin, Tom J. (2014) Rare but active taxa contribute to community dynamics of benthic biofilms in glacier-fed streams. Environmental Microbiology, 16 (8). pp. 2514-2524. doi:10.1111/1462-2920.12392 ISSN 1462-2912.
Alneberg, Johannes, Bjarnason, Brynjar Smári, de Bruijn, Ino, Schirmer, Melanie, Quick, Joshua, Ijaz, Umer Z., Lahti, Leo, Loman, Nicholas J., Andersson, Anders F. and Quince, Christopher (2014) Binning metagenomic contigs by coverage and composition. Nature Methods, Volume 11 . pp. 1144-1146. doi:10.1038/nmeth.3103 ISSN 1548-7091.
Fonseca, Vera G., Carvalho, Gary R., Nichols, Ben, Quince, Christopher, Johnson, Harriet F., Neill, Simon P., Lambshead, John D., Thomas, W. Kelley, Power, Deborah M. and Creer, Simon (2014) Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes. Global Ecology and Biogeography, 23 (11). pp. 1293-1302. doi:10.1111/geb.12223 ISSN 1466822X.
Gerasimidis, Konstantinos, Russell, Richard, Hansen, Richard, Quince, Christopher, Loman, Nick, Bertz, Martin, Hanske, Laura, Blaut, Michael, McGrogan, Paraic and Edwards, Christine A. (2014) Role of faecalibacterium prausnitzii in Crohnʼs Disease. Inflammatory Bowel Diseases, 20 (7). E18-E19. doi:10.1097/MIB.0000000000000079 ISSN 1078-0998.
Loman, Nicholas J., Constantinidou, Chrystala, Christner, Martin, Rohde, Holger, Chan, Jacqueline, Quick, Joshua, Weir, Jacqueline C., Quince, Christopher, Smith, Geoffrey, Betley, Jason R., Aepfelbacher, Martin and Pallen, Mark J. (2013) A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-Toxigenic Escherichia coli O104:H4. JAMA: The Journal of the American Medical Association, Volume 309 (Number 14). pp. 1502-1510. doi:10.1001/jama.2013.3231 ISSN 0098-7484.
Jakobsson, Hedvig E., Abrahamsson, Thomas R., Jenmalm, Maria C., Harris, Keith, Quince, Christopher , Jernberg, Cecilia, Björkstén, Bengt, Engstrand, Lars and Andersson, Anders F. (2013) Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section. Gut, 63 (4). pp. 559-566. doi:10.1136/gutjnl-2012-303249 ISSN 0017-5749.
Quince, Christopher , Lundin, E. E., Andreasson, A. N., Greco, D., Rafter, J., Talley, N. J., Agreus, L., Andersson, A. F., Engstrand, L. and D'Amato, M. (2013) The impact of Crohn's disease genes on healthy human gut microbiota : a pilot study. Gut, Volume 62 (Number 6). pp. 952-954. doi:10.1136/gutjnl-2012-304214 ISSN 0017-5749.
Holmes, Ian, Harris, Keith and Quince, Christopher (2012) Dirichlet multinomial mixtures : generative models for microbial metagenomics. PLoS One, Volume 7 (Number 2). Article number e30126. doi:10.1371/journal.pone.0030126 ISSN 1932-6203.
Quince, Christopher, Lanzen, Anders, Davenport, Russell J. and Turnbaugh, Peter J. (2011) Removing noise from pyrosequenced amplicons. BMC Bioinformatics, Volume 12 (Number 1). Article number 38. doi:10.1186/1471-2105-12-38 ISSN 1471-2105.
Gilbert, Jack A., Meyer, Folker, Antonopoulos, Dion, Balaji, Pavan, Brown, C. Titus, Brown, Christopher T., Desai, Narayan, Eisen, Jonathan A., Evers, Dirk, Field, Dawn et al.
(2010)
Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project.
Standards in Genomic Sciences, 3
(3).
pp. 243-248.
doi:10.4056/sigs.1433550
ISSN 1944-3277.
Quince, Christopher, Lanzén, Anders, Curtis, Thomas P., Davenport, Russell J., Hall, Neil, Head, Ian M., Read, L Fiona and Sloan, William T. (2009) Accurate determination of microbial diversity from 454 pyrosequencing data. Nature Methods, 6 (9). pp. 639-641. ISSN 1548-7091 doi:10.1038/nmeth.1361
This list was generated on Tue Apr 23 07:43:25 2024 BST.