The Library
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Number of items: 31.
2024
Whitley, Kevin D., Grimshaw, James, Roberts, David M., Karinou, Eleni, Stansfeld, Phillip J. and Holden, Séamus (2024) Peptidoglycan synthesis drives a single population of septal cell wall synthases during division in Bacillus subtilis. Nature Microbiology . doi:10.1038/s41564-024-01650-9 ISSN 2058-5276. (In Press)
Whitley, Kevin D., Grimshaw, James, Roberts, David M., Karinou, Eleni, Stansfeld, Phillip J. and Holden, Séamus (2024) A one-track model for spatiotemporal coordination of Bacillus subtilis septal 2 cell wall synthesis. Nature Microbiology . ISSN 2058-5276. (In Press)
2022
Hohlbein, Johannes, Diederich, Benedict, Marsikova, Barbora, Reynaud, Emmanuel G., Holden, Séamus, Jahr, Wiebke, Haase, Robert and Prakash, Kirti (2022) Open microscopy in the life sciences : quo vadis? Nature Methods, 19 . pp. 1020-1025. ISSN 1548-7091 doi:10.1038/s41592-022-01602-3
Spahn, Christoph, Gómez-de-Mariscal, Estibaliz, Laine, Romain F., Pereira, Pedro M., von Chamier, Lucas, Conduit, Mia, Pinho, Mariana G., Jacquemet, Guillaume, Holden, Séamus, Heilemann, Mike and Henriques, Ricardo (2022) DeepBacs for multi-task bacterial image analysis using open-source deep learning approaches. Communications Biology, 5 . 688. doi:10.1038/s42003-022-03634-z ISSN 2399-3642.
Whitley, Kevin D., Middlemiss, Stuart, Jukes, Calum, Dekker, Cees and Holden, Séamus (2022) High-resolution imaging of bacterial spatial organization with vertical cell imaging by nanostructured immobilization (VerCINI). Nature Protocols, 17 (3). pp. 847-869. doi:10.1038/s41596-021-00668-1 ISSN 1750-2799.
2021
von Chamier, Lucas, Laine, Romain F., Jukkala, Johanna, Spahn, Christoph, Krentzel, Daniel, Nehme, Elias, Lerche, Martina, Hernández-Pérez, Sara, Mattila, Pieta K., Karinou, Eleni et al.
(2021)
Democratising deep learning for microscopy with ZeroCostDL4Mic.
Nature Communications, 12
(1).
2276 .
doi:10.1038/s41467-021-22518-0
ISSN 2041-1723.
Whitley, Kevin D., Jukes, Calum, Tregidgo, Nicholas, Karinou, Eleni, Almada, Pedro, Cesbron, Yann, Henriques, Ricardo, Dekker, Cees and Holden, Séamus (2021) FtsZ treadmilling is essential for Z-ring condensation and septal constriction initiation in Bacillus subtilis cell division. Nature Communications, 12 (1). 2448 . doi:10.1038/s41467-021-22526-0 ISSN 2041-1723.
2020
Wu, Ling Juan, Lee, Seoungjun, Park, Sungshic, Eland, Lucy E., Wipat, Anil, Holden, Séamus and Errington, Jeff (2020) Geometric principles underlying the proliferation of a model cell system. Nature Communications, 11 (1). 4149 . doi:10.1038/s41467-020-17988-7 ISSN 2041-1723.
2019
Sage, Daniel, Pham, Thanh-An, Babcock, Hazen, Lukes, Tomas, Pengo, Thomas, Chao, Jerry, Velmurugan, Ramraj, Herbert, Alex, Agrawal, Anurag, Colabrese, Silvia et al.
(2019)
Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.
Nature Methods, 16
(5).
pp. 387-395.
doi:10.1038/s41592-019-0364-4
ISSN 1548-7091.
Perez, Amilcar J., Cesbron, Yann, Shaw, Sidney L., Bazan Villicana, Jesus, Tsui, Ho-Ching T., Boersma, Michael J., Ye, Ziyun A., Tovpeko, Yanina, Dekker, Cees, Holden, Séamus and Winkler, Malcolm E. (2019) Movement dynamics of divisome proteins and PBP2x:FtsW in cells of Streptococcus pneumoniae. Proceedings of the National Academy of Sciences of the United States of America, 116 (8). pp. 3211-3220. doi:10.1073/pnas.1816018116 ISSN 0027-8424.
2018
Lambert, Ambroise, Vanhecke, Aster, Archetti, Anna, Holden, Séamus, Schaber, Felix, Pincus, Zachary, Laub, Michael T., Goley, Erin and Manley, Suliana (2018) Constriction rate modulation can drive cell size control and homeostasis in C. crescentus. iScience, 4 . pp. 180-189. doi:10.1016/j.isci.2018.05.020 ISSN 2589-0042.
Holden, Séamus (2018) Probing the mechanistic principles of bacterial cell division with super-resolution microscopy. Current Opinion in Microbiology, 43 . pp. 84-91. doi:10.1016/j.mib.2017.12.005 ISSN 1369-5274.
2017
Bisson-Filho, Alexandre W., Hsu, Yen-Pang, Squyres, Georgia R., Kuru, Erkin, Wu, Fabai, Jukes, Calum, Sun, Yingjie, Dekker, Cees, Holden, Séamus, VanNieuwenhze, Michael S., Brun, Yves V. and Garner, Ethan C. (2017) Treadmilling by FtsZ filaments drives peptidoglycan synthesis and bacterial cell division. Science, 355 (6326). pp. 739-743. doi:10.1126/science.aak9973 ISSN 0036-8075.
2016
Mignolet, Johann, Holden, Séamus, Bergé, Matthieu, Panis, Gaël, Eroglu, Ezgi, Théraulaz, Laurence, Manley, Suliana and Viollier, Patrick H. (2016) Functional dichotomy and distinct nanoscale assemblies of a cell cycle-controlled bipolar zinc-finger regulator. eLife, 5 . e18647. doi:10.7554/eLife.18647 ISSN 2050-084X.
Bergé, Matthieu, Campagne, Sébastien, Mignolet, Johann, Holden, Séamus, Théraulaz, Laurence, Manley, Suliana, Allain, Frédéric H -T. and Viollier, Patrick H. (2016) Modularity and determinants of a (bi-)polarization control system from free-living and obligate intracellular bacteria. eLife, 5 . e20640. doi:10.7554/eLife.20640 ISSN 2050-084X.
Holden, Séamus and Sage, Daniel (2016) Super-resolution fight club. Nature Photonics, 10 (3). pp. 152-153. doi:10.1038/nphoton.2016.22 ISSN 1749-4885.
2015
Muñoz-Barrutia, Arrate, Carlini, Lina, Holden, Séamus, Douglass, Kyle M. and Manley, Suliana (2015) Correction of a depth-dependent lateral distortion in 3D super-resolution imaging. PLoS One, 10 (11). e0142949. doi:10.1371/journal.pone.0142949 ISSN 1932-6203.
Pengo, T., Holden, Séamus and Manley, S. (2015) PALMsiever : a tool to turn raw data into results for single-molecule localization microscopy. Bioinformatics, 31 (5). pp. 797-798. doi:10.1093/bioinformatics/btu720 ISSN 1367-4803.
2014
Min, Junhong, Holden, Séamus, Carlini, Lina, Unser, Michael, Manley, Suliana and Ye, Jong Chul (2014) 3D high-density localization microscopy using hybrid astigmatic/ biplane imaging and sparse image reconstruction. Biomedical Optics Express, 5 (11). pp. 3935-3948. doi:10.1364/BOE.5.003935 ISSN 2156-7085.
Min, Junhong, Vonesch, Cédric, Kirshner, Hagai, Carlini, Lina, Olivier, Nicolas, Holden, Séamus, Manley, Suliana, Ye, Jong Chul and Unser, Michael (2014) FALCON : fast and unbiased reconstruction of high-density super-resolution microscopy data. Scientific Reports, 4 (1). 4577 . doi:10.1038/srep04577 ISSN 2045-2322.
Holden, Séamus, Pengo, Thomas, Meibom, Karin L., Fernandez Fernandez, Carmen, Collier, Justine and Manley, Suliana (2014) High throughput 3D super-resolution microscopy reveals Caulobacter crescentus in vivo Z-ring organization. Proceedings of the National Academy of Sciences of the United States of America, 111 (12). pp. 4566-4571. doi:10.1073/pnas.1313368111 ISSN 0027-8424.
Achurra, Paulina, Holden, Séamus, Pengo, Thomas and Manley, Suliana (2014) Photoactivated localization microscopy for cellular imaging. In: Super-Resolution Microscopy Techniques in the Neurosciences. Neuromethods, 86 . Totowa, NJ: Humana Press, pp. 87-111. ISBN 9781627039826
2013
Endesfelder, Ulrike, Finan, Kieran, Holden, Séamus, Cook, Peter R., Kapanidis, Achillefs N. and Heilemann, Mike (2013) Multiscale spatial organization of RNA polymerase in Escherichia coli. Biophysical Journal, 105 (1). pp. 172-181. doi:10.1016/j.bpj.2013.05.048 ISSN 0006-3495.
2011
Holden, Séamus, Uphoff, Stephan and Kapanidis, Achillefs N. (2011) DAOSTORM : an algorithm for high- density super-resolution microscopy. Nature Methods, 8 (4). pp. 279-280. doi:10.1038/nmeth0411-279 ISSN 1548-7091.
Torella, Joseph P., Holden, Séamus, Santoso, Yusdi, Hohlbein, Johannes and Kapanidis, Achillefs N. (2011) Identifying molecular dynamics in single-molecule FRET experiments with burst variance analysis. Biophysical Journal, 100 (6). pp. 1568-1577. doi:10.1016/j.bpj.2011.01.066 ISSN 0006-3495.
2010
Holden, Séamus, Uphoff, Stephan, Hohlbein, Johannes, Yadin, David, Le Reste, Ludovic, Britton, Oliver J. and Kapanidis, Achillefs N. (2010) Defining the limits of single-molecule FRET resolution in TIRF microscopy. Biophysical Journal, 99 (9). pp. 3102-3111. doi:10.1016/j.bpj.2010.09.005 ISSN 0006-3495.
Uphoff, Stephan, Holden, Séamus, Le Reste, Ludovic, Periz, Javier, van de Linde, Sebastian, Heilemann, Mike and Kapanidis, Achillefs N. (2010) Monitoring multiple distances within a single molecule using switchable FRET. Nature Methods, 7 (10). pp. 831-836. doi:10.1038/nmeth.1502 ISSN 1548-7091.
Lymperopoulos, Konstantinos, Crawford, Robert, Torella, Joseph P., Heilemann, Mike, Hwang, Ling Chin, Holden, Séamus and Kapanidis, Achillefs N. (2010) Einzelmolekül-DNA-Biosensoren zur detektion von proteinen und Liganden. Angewandte Chemie International Edition, 122 (7). pp. 1338-1342. doi:10.1002/ange.200904597 ISSN 1433-7851.
Lymperopoulos, Konstantinos, Crawford, Robert, Torella, Joseph P., Heilemann, Mike, Hwang, Ling Chin, Holden, Séamus and Kapanidis, Achillefs N. (2010) Single-molecule DNA biosensors for protein and ligand detection. Angewandte Chemie International Edition, 49 (7). pp. 1316-1320. doi:10.1002/anie.200904597 ISSN 1433-7851.
Crawford, Robert, Lymperopoulos, Konstantinos, Torella, Joseph P., Heilemann, Mike, Hwang, Ling C., Holden, Séamus and Kapanidis, Achillefs (2010) Single-molecule DNA biosensors for quantitative transcription factor detection. Biophysical Journal, 98 (3). 611a. doi:10.1016/j.bpj.2009.12.3333 ISSN 0006-3495.
2009
Hwang, Ling Chin, Hohlbein, Johannes, Holden, Séamus and Kapanidis, Achillefs N. (2009) Single-Molecule FRET : methods and biological applications. In: Hinterdorfer, P. and Oijen, A., (eds.) Handbook of Single-Molecule Biophysics. New York, NY: Springer, pp. 129-163. ISBN 9780387764962
This list was generated on Fri Mar 29 14:54:55 2024 GMT.