2023

Šumilo, Dana, Love, Nicola K, Manuel, Rohini, Dabke, Girija, Paranthaman, Karthik, Jenkins, Claire and McCarthy, Noel D. (2023) Forgotten but not gone : yersinia infections in England, 1975 to 2020. Eurosurveillance, 28 (14). 2200516. doi:10.2807/1560-7917.ES.2023.28.14.2200516 ISSN 1560-7917.

Cavallaro, Massimo, Moran, Ed, Collyer, Benjamin, McCarthy, Noel D., Green, Christopher and Keeling, Matt J. (2023) Informing antimicrobial stewardship with explainable AI. PLOS Digital Health, 2 (1). e0000162. doi:10.1371/journal.pdig.0000162 ISSN 2767-3170.

2022

Cavallaro, Massimo, Coelho, Juliana, Ready, Derren, Decraene, Valerie, Lamagni, Theresa, McCarthy, Noel D., Todkill, Daniel and Keeling, Matt J. (2022) Cluster detection with random neighbourhood covering : application to invasive Group A Streptococcal disease. PLoS Computational Biology, 18 (11). e1010726. doi:10.1371/journal.pcbi.1010726 ISSN 1553-7358.

Rodwell, Ella V., Chan, Yung-Wai, Sawyer, Clare, Carroll, Anne, McNamara, Eleanor, Allison, Lesley, Browning, Lynda, Holmes, Anne, Godbole, Gauri, McCarthy, Noel D. and Jenkins, Claire (2022) Shiga toxin-producing Escherichia coli clonal complex 32, including serotype O145:H28, in the UK and Ireland. Journal of Medical Microbiology, 71 (8). doi:10.1099/jmm.0.001579 ISSN 0022-2615.

Auguste, Peter E., Mistry, Hema, McCarthy, Noel D., Sutcliffe, Paul and Clarke, Aileen (2022) Cost-effectiveness of testing for latent tuberculosis infection in people with HIV. AIDS, 36 (1). pp. 1-9. doi:10.1097/QAD.0000000000003060 ISSN 0269-9370.

Ayorinde, Abimbola, Ghosh, Iman, Barr, Benjamin, McCarthy, Noel D. and Oyebode, Oyinlola (2022) Health inequalities and infectious diseases : a rapid review of reviews. Public Health England.

2021

Rodwell, Ella V., Vishram, Bhavita, Smith, Robert, Browning, Lynda, Smith-Palmer, Alison, Allison, Lesley, Holmes, Anne, Godbole, Gauri, McCarthy, Noel D., Dallman, Timothy J. and Jenkins, Claire (2021) Epidemiology and genomic analysis of Shiga toxin-producing Escherichia coli clonal complex 165 in the UK. Journal of Medical Microbiology, 70 (12). 001471. doi:10.1099/jmm.0.001471 ISSN 0022-2615.

Cavallaro, Massimo, Moiz, Haseeb, Keeling, Matt J. and McCarthy, Noel D. (2021) Contrasting factors associated with COVID-19-related ICU admission and death outcomes in hospitalised patients by means of Shapley values. PLoS Computational Biology, 17 (6). e1009121. doi:10.1371/journal.pcbi.1009121 ISSN 1553-7358.

Grove, Amy L., Osokogu, Osemeke, Al-Khudairy, Lena, Mehrabian, Amin, Zanganeh, Mandana, Brown, Anna, Court, Rachel A., Taylor-Phillips, Sian, Uthman, Olalekan A., McCarthy, Noel D., Kumar, Sudhesh and Clarke, Aileen (2021) Association between vitamin D supplementation or serum vitamin D level and susceptibility to SARS-CoV-2 infection or COVID-19 including clinical course, morbidity and mortality outcomes? A systematic review. BMJ Open, 11 . e043737. doi:10.1136/bmjopen-2020-043737 ISSN 2044-6055.

Cavallaro, Massimo, Moiz, Haseeb, Keeling, Matt J. and McCarthy, Noel D. (2021) Contrasting factors associated with COVID-19-related ICU admission and death outcomes in hospitalised patients by means of Shapley values. Working Paper. Cold Spring Harbor: MedRXiv.

Didelot, Xavier, Kendall, Michelle, Xu, Yuanwei, White, Peter J. and McCarthy, Noel D. (2021) Genomic epidemiology analysis of infectious disease outbreaks using transPhylo. Current Protocols, 1 (2). e60. doi:10.1002/cpz1.60 ISSN 2691-1299.

2020

Esan, Oluwaseun B., Perera, Rafael, McCarthy, Noel D., Violato, Mara and Fanshawe, Thomas R. (2020) Incidence, risk factors, and health service burden of sequelae of Campylobacter and Non-typhoidal Salmonella infections in England, 2000-2015 : a retrospective cohort study using linked electronic health records Sequelae of gastrointestinal infections. Journal of Infection, 81 (2). pp. 221-230. doi:10.1016/j.jinf.2020.05.027 ISSN 0163-4453.

2019

Shiri, T., Kamran, K., Keaney, K., Mukherjee, G., McCarthy, Noel D. and Petrou, Stavros (2019) Pneumococcal disease : a systematic review of health utilities, resource use, costs, and economic evaluations of interventions. Value in Health, 22 (11). pp. 1329-1344. doi:10.1016/j.jval.2019.06.011 ISSN 1098-3015.

Awofisayo-Okuyelu, Adedoyin, Brainard, Julii, Hall, Ian and McCarthy, Noel D. (2019) Incubation period of Shiga-toxin producing Escherichia coli. Epidemiologic Reviews, 41 (1). pp. 121-129. doi:10.1093/epirev/mxz001 ISSN 0193-936X.

Awofisayo-Okuyelu, Adedoyin, Pratt, Adrian, McCarthy, Noel D. and Hall, Ian (2019) Within-host mathematical modelling of the incubation period of Salmonella Typhi. Royal Society Open Science, 6 (9). 182143. doi:10.1098/rsos.182143 ISSN 2054-5703.

Noufaily, Angela, Morbey, Roger A., Colón-González, Felipe J., Elliot, Alex J., Smith, Gillian E., Lake, Iain R. and McCarthy, Noel D. (2019) Comparison of statistical algorithms for daily syndromic surveillance aberration detection. Bioinformatics, 35 (17). pp. 3110-3118. doi:10.1093/bioinformatics/bty997 ISSN 1367-4803.

Shiri, Tinevimbo, McCarthy, Noel D. and Petrou, Stavros (2019) The impact of childhood pneumococcal vaccination on hospital admissions in England : a whole population observational study. BMC Infectious Diseases, 19 . 510. doi:10.1186/s12879-019-4119-8 ISSN 1471-2334.

Inns, T., Curtis, D., Crook, P., Vivancos, R., Gardiner, D., McCarthy, Noel D. and Mook, Piers (2019) Are food exposures obtained through commercial market panels representative of the general population? Implications for outbreak investigations. Epidemiology and Infection, 147 . e99. doi:10.1017/S0950268819000219 ISSN 0950-2688.

Seedat, Farah, Geppert, Julia, Stinton, Chris, Patterson, Jacoby, Freeman, Karoline, Johnson, Samantha Ann, Fraser, Hannah, Brown, Colin Stewart, Uthman, Olalekan A., Tan, Bee K., Robinson, Esther R., McCarthy, Noel D., Clarke, Aileen, Marshall, John, Visintin, Cristina, Mackie, Anne and Taylor-Phillips, Sian (2019) Universal antenatal screening for group B streptococcus may cause more harm than good. BMJ, 364 (364). l463. doi:10.1136/bmj.l463 ISSN 0959-535X.

2018

Seedat, Farah, Brown, Colin Stewart, Stinton, Chris, Patterson, Jacoby, Geppert, Julia, Freeman, Karoline, Tan, Bee K., Johnson, Samantha Ann, Fraser, Hannah, Uthman, Olalekan A., Robinson, Esther R., McCarthy, Noel D., Clarke, Aileen and Taylor-Phillips, Sian (2018) Bacterial load and molecular markers associated with early-onset Group B Streptococcus. The Pediatric infectious disease journal, 37 (12). e306-e314. doi:10.1097/INF.0000000000002050 ISSN 1532-0987.

Byrne, Lisa, Dallman, Timothy J., Adams, Natalie, Mikhail, Amy F.W., McCarthy, Noel D. and Jenkins, Claire (2018) Highly Pathogenic Clone of Shiga Toxin–Producing Escherichia coli O157:H7, England and Wales. Emerging Infectious Diseases , 24 (12). pp. 2303-2308. doi:10.3201/eid2412.180409 ISSN 1080-6059.

Byrne, Lisa, Dallman, Timothy J., Adams, Natalie, Mikhail, Amy F. W., McCarthy, Noel D. and Jenkins, Claire (2018) Highly pathogenic clone of Shiga toxin–producing Escherichia coli O157:H7, England and Wales. Emerging Infectious Diseases , 24 (12). pp. 2303-2308. doi:10.3201/eid2412.180409 ISSN 1080-6059.

Awofisayo-Okuyelu , Adedoyin , McCarthy, Noel D., Mgbakor , Ifunanya and Hall, Ian (2018) Incubation period of typhoidal salmonellosis : a systematic review and meta-analysis of outbreaks and experimental studies occurring over the last century. BMC Infectious Diseases, 18 . 483. doi:10.1186/s12879-018-3391-3 ISSN 1471-2334.

Mook, Piers, Gardiner, D., Kanagarajah, S., Kerac, M., Hughes, G., Field, N., McCarthy, Noel D., Rawlings, C., Simms, I., Lane, C. and Crook, P. D. (2018) Use of gender distribution in routine surveillance data to detect potential transmission of gastrointestinal infections among men who have sex with men in England. Epidemiology and Infection, 146 (11). pp. 1468-1477. doi:10.1017/S0950268818001681 ISSN 0950-2688.

Inns, Thomas, Cleary, Paul, Bundle, Nick, Foulkes, Sarah, Sharp, Ashley, Utsi, Lara, McBrien, Chris, Teagle, Rehman, Waldram, Alison, Williams, Chris, McCann, Cathy, Smith, Rob, Saleh, Sepeedeh, McCarthy, Noel D., Vivancos, Roberto, Hawker, Jeremy and Decraene, Valerie (2018) Novel application of the matched case–control design to compare food supply chains during an Escherichia coli O157 outbreak, United Kingdom, 2016. Eurosurveillance, 23 (18). 17-00195. doi:10.2807/1560-7917.es.2018.23.18.17-00195 ISSN 1560-7917.

Mook, P., McCormick, J., Kanagarajah, S., Adak, G .K., Cleary, P., Elson, R., Gobin, M., Hawker, J., Inns, T., Sinclair, C., Trienekens, S. C. M., Vivancos, R. and McCarthy, Noel D. (2018) Online market research panel members as controls in case-control studies to investigate gastrointestinal disease outbreaks : early experiences and lessons learnt from the UK. Epidemiology and Infection, 146 (4). pp. 458-464. doi:10.1017/S0950268817002953 ISSN 0950-2688.

2017

(2017) Recurrent seasonal outbreak of an emerging serotype of Shiga toxin-producing Escherichia coli (STEC O55:H7 stx 2a) in the south west of England, July 2014 to September 2015. Eurosurveillance, 22 (36). 2. doi:10.2807/1560-7917.ES.2017.22.36.30610 ISSN 1560-7917.

Duggan, J. M., Close, R., McCann, L., Wright, D., Keys, M., McCarthy, Noel D., Mannes, T., Walsh, A., Charlett, A. and Brooks, T. J. G. (2017) A seroprevalence study to determine the frequency of hantavirus infection in people exposed to wild and pet fancy rats in England. Epidemiology and Infection, 145 (12). pp. 2458-2465. doi:10.1017/S0950268817001480 ISSN 0950-2688.

Awofisayo-Okuyelu, A., Hall, I., Adak, G., Hawker, J. I., Abbott, Susan and McCarthy, Noel D. (2017) A systematic review and meta-analysis on the incubation period of Campylobacteriosis. Epidemiology and Infection, 145 (11). pp. 2241-2253. doi:10.1017/S0950268817001303 ISSN 0950-2688.

Seedat, Farah, Stinton, Chris, Patterson, Joseph P., Geppert, Julia, Tan, Bee K., Robinson, Esther R., McCarthy, Noel D., Uthman, Olalekan A., Freeman, Karoline, Johnson, Samantha Ann, Fraser, Hannah, Brown, Colin Stewart, Clarke, Aileen and Taylor-Phillips, Sian (2017) Adverse events in women and children who have received intrapartum antibiotic prophylaxis treatment : a systematic review. BMC Pregnancy and Childbirth, 17 (1). p. 247. doi:10.1186/s12884-017-1432-3 ISSN 1471-2393.

Cody, Alison J., Bray, James E., Jolley, Keith A., McCarthy, Noel D., Maiden, Martin C. J. and Diekema, Daniel J. (2017) Core genome multilocus sequence typing scheme for stable, comparative analyses of Campylobacter jejuni and c. Coli human disease isolates. Journal of Clinical Microbiology, 55 (7). pp. 2086-2097. doi:10.1128/JCM.00080-17 ISSN 0095-1137.

Freeman, Karoline, Mistry, Hema, Tsertsvadze, Alexander, Royle, Pamela, McCarthy, Noel D., Taylor-Phillips, Sian, Manuel, Rohini and Mason, James (2017) Multiplex tests to identify gastrointestinal bacteria, viruses and parasites in people with suspected infectious gastroenteritis : a systematic review and economic analysis. Health Technology Assessment, 21 (23). pp. 1-188. doi:10.3310/hta21230 ISSN 1366-5278.

Esan, Oluwaseun B., Pearce, Madison, van Hecke, Oliver, Roberts, Nia, Collins, Dylan R.J., Violato, Mara, McCarthy, Noel D., Perera, Rafael and Fanshawe, Thomas R. (2017) Factors associated with sequelae of campylobacter and non-typhoidal salmonella infections : a systematic review. EBioMedicine, 15 . pp. 100-111. doi:10.1016/j.ebiom.2016.12.006 ISSN 2352-3964.

Auguste, Peter, Tsertsvadze, Alexander, Pink, Joshua, Court, Rachel A., McCarthy, Noel D., Sutcliffe, P. (Paul) and Clarke, Aileen (2017) Comparing interferon-gamma release assays with tuberculin skin test for identifying latent tuberculosis infection that progresses to active tuberculosis : systematic review and meta-analysis. BMC Infectious Diseases, 17 (1). doi:10.1186/s12879-017-2301-4 ISSN 1471-2334.

Freeman, Karoline, Tsertsvadze, Alexander, Taylor-Phillips, Sian, McCarthy, Noel D., Mistry, Hema, Manuel, Rohini and Mason, James (2017) Agreement between gastrointestinal panel testing and standard microbiology methods for detecting pathogens in suspected infectious gastroenteritis : test evaluation and meta-analysis in the absence of a reference standard. PLoS One, 12 (3). e0173196. ISSN 1932-6203.

Shiri, Tinevimbo, Datta, Samik, Madan, Jason, Tsertsvadze, Alexander, Royle, Pamela, Keeling, Matthew James, McCarthy, Noel D. and Petrou, Stavros (2017) Indirect effects of childhood pneumococcal conjugate vaccination on invasive pneumococcal disease: a systematic review and meta-analysis. Lancet Global Health, 5 (1). E51-E59. doi:10.1016/S2214-109X(16)30306-0 ISSN 2214-109X.

McCarthy, Noel D. (2017) Campylobacter. In: Deng, Xiangyu and den Bakker, Henk C. and Hendriksen, Rene S., (eds.) Applied Genomics of Foodborne Pathogens. Food Microbiology and Food Safety . Springer International Publishing, pp. 127-143. ISBN 9783319437491

2016

Ford, Karen J., Lang, Sarah, Pollard, Andrew J. and McCarthy, Noel D. (2016) A quantitative review of healthcare professionals' questions to a local immunization advice service : 4299 enquiries from 3 years. Journal of Public Health, 38 (3). pp. 578-584. doi:10.1093/pubmed/fdv112 ISSN 1741-3842.

Kanagarajah, S., Mook, P., Crook, P., Awofisayo-Okuyelu, A. and McCarthy, Noel D. (2016) Taste and safety : is the exceptional cuisine offered by high end restaurants paralleled by high standards of food safety? PLOS Currents : Outbreaks, 8 . p. 1. doi:10.1371/currents.outbreaks.007219ac3b9a2117418df7ab629686b6 ISSN 2157-3999.

Paranthaman, K., McCarthy, Noel D., Rew, V., van Zoelen, S. and Cockerill, L. (2016) Pertussis vaccination for healthcare workers : staff attitudes and perceptions associated with high coverage vaccination programmes in England. Public Health, 137 . pp. 196-199. doi:10.1016/j.puhe.2016.02.033 ISSN 0033-3506.

Chalker , Victoria J., Smith, Alyson, Al-Shahib, Ali, Botchway, Stella, Macdonald, Emily, Daniel, Roger, Phillips, Sarah, Platt, Steven, Doumith, Michel, Tewolde, Rediat, Coelho, Juliana, Jolley, Keith A., Underwood, Anthony and McCarthy, Noel D. (2016) Integration of genomic and other epidemiologic data to investigate and control a cross-institutional outbreak of Streptococcus pyogenes outbrea. Emerging Infectious Diseases , 22 (6). doi:10.3201/eid2206.142050 ISSN 1080-6059.

Tsertsvadze, Alexander, Royle, Pamela, Seedat, Farah, Cooper, Jennifer, Crosby, Rebecca and McCarthy, Noel D. (2016) Community-onset sepsis and its public health burden : a systematic review. Systematic Reviews, 5 . 81. doi:10.1186/s13643-016-0243-3 ISSN 2046-4053.

Toleman, Michelle S., Herbert, Katharine, McCarthy, Noel D. and Church, David N. (2016) Vaccination of chemotherapy patients — effect of guideline implementation. Supportive Care In Cancer, 24 (5). pp. 2317-2321. doi:10.1007/s00520-015-3037-6 ISSN 0941-4355.

Vidal, A. B., Colles, F. M., Rodgers, J. D., McCarthy, Noel D., Davies, R. H., Maiden, M. C. J. and Clifton-Hadley, F. A. (2016) Genetic diversity of Campylobacter jejuni and Campylobacter coli isolates from conventional broiler flocks and the impacts of sampling strategy and laboratory method. Applied and Environmental Microbiology, 82 (8). pp. 2347-2355. doi:10.1128/AEM.03693-15 ISSN 0099-2240.

2015

Tsertsvadze, Alexander, Chen, Y-F.‏‎, Moher, David, Sutcliffe, P. (Paul) and McCarthy, Noel D. (2015) How to conduct systematic reviews more expeditiously? Systematic Reviews, 4 (1). doi:10.1186/s13643-015-0147-7 ISSN 2046-4053.

Cody, Alison J., McCarthy, Noel D., Bray, James E., Wimalarathna, Helen M. L., Colles, Frances M., van Rensburg, Melissa J., Dingle, Kate E., Waldenström, Jonas and Maiden, Martin C. J. (2015) Wild bird-associated Campylobacter jejuni isolates are a consistent source of human disease, in Oxfordshire, United Kingdom. Environmental Microbiology Reports, 7 (5). pp. 782-788. doi:10.1111/1758-2229.12314 ISSN 1758-2229.

Tsertsvadze, Alexander, Royle, Pamela and McCarthy, Noel D. (2015) Community-onset sepsis and its public health burden : protocol of a systematic review. Systematic Reviews, 4 . 119. doi:10.1186/s13643-015-0103-6 ISSN 2046-4053.

Fernandes, Anand M., Balasegaram, Sooria, Willis, Caroline, Wimalarathna, Helen M. L., Maiden, Martin C. J. and McCarthy, Noel D. (2015) Partial failure of milk pasteurization as a risk for the transmission of campylobacter from cattle to humans. Clinical Infectious Diseases, 61 (6). pp. 903-909. 431. doi:10.1093/cid/civ431 ISSN 1058-4838.

John, T., Voysey, M., Yu, L. M., McCarthy, Noel D., Baudin, M., Richard, P., Fiquet, A., Kitchin, N. and Pollard, A. J. (2015) Immunogenicity of a low-dose diphtheria, tetanus and acellular pertussis combination vaccine with either inactivated or oral polio vaccine compared to standard-dose diphtheria, tetanus, acellular pertussis when used as a pre-school booster in UK children : a 5-year follow-up of a randomised controlled study. Vaccine, 33 (36). pp. 4579-4585. doi:10.1016/j.vaccine.2015.06.105 ISSN 0264-410X.

Mytton, O. T., McCarthy, Noel D. and Mannes, T. (2015) Variation in incidence and notification of Campylobacter and Salmonella by general practice in the Thames Valley area. Public Health, 129 (3). pp. 258-265. doi:10.1016/j.puhe.2015.01.002 ISSN 0033-3506.

2014

McCann, L. J., Suchanek, O., McCarthy, Noel D. and Mannes, T. (2014) Descriptive epidemiology of school outbreaks of seasonal influenza B during 2012/2013 in the Thames Valley, United Kingdom. Public Health, 128 (12). pp. 1121-1124. doi:10.1016/j.puhe.2014.08.016 ISSN 0033-3506.

Briggs, A. D. M., Boxall, N. S., Van Santen, D., Chalmers, R. M. and McCarthy, Noel D. (2014) Approaches to the detection of very small, common, and easily missed outbreaks that together contribute substantially to human Cryptosporidium infection. Epidemiology and Infection, 142 (09). pp. 1869-1876. doi:10.1017/S0950268814000673 ISSN 0950-2688.

Lang, S., Ford, K., John, T., Pollard, A. and McCarthy, Noel D. (2014) Immunisation errors reported to a vaccine advice service : intelligence to improve practice. Quality in Primary Care, 22 (3). pp. 139-146. ISSN 1479-1072.

(2014) Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007–12, with whole pathogen genome sequences : an observational study. The Lancet Respiratory Medicine, 2 (4). pp. 285-292. doi:10.1016/S2213-2600(14)70027-X ISSN 2213-2600.

Colles, Frances M., McCarthy, Noel D., Bliss, Carly M., Layton, Ruth and Maiden, Martin C. J. (2014) The long-term dynamics of Campylobactercolonizing a free-range broiler breeder flock : an observational study. Environmental Microbiology, 17 (4). pp. 938-946. doi:10.1111/1462-2920.12415 ISSN 1462-2912.

2003

Powell, John, McCarthy, Noel D. and Eysenbach, Gunther (2003) Cross-sectional survey of users of internet depression communities. BMC Psychiatry, Vol.3 (No.19). doi:10.1186/1471-244X-3-19 ISSN 1471-244x.