2016

Domijan, Mirela, Brown, Paul E., Shulgin, Boris V. and Rand, D. A. (David A.) (2016) PeTTSy : a computational tool for perturbation analysis of complex systems biology models. BMC Bioinformatics, 17 (124). doi:10.1186/s12859-016-0972-2

2015

Domijan, Mirela and Rand, D. A. (David A.) (2015) Using constraints and their value for optimization of large ODE systems. Journal of The Royal Society Interface, Volume 12 (Number 104). Article number 20141303. doi:10.1098/rsif.2014.1303

2013

Gould, Peter D., Ugarte, Nicolas, Domijan, Mirela, Costa, Maria J. (Maria João), Foreman, Julia, MacGregor, Dana, Rose, Ken, Griffiths, Jayne, Millar, A. J. (Andrew J.), Finkenstädt, Bärbel, Penfield, Steven, Rand, D. A. (David A.), Halliday, Karen J. and Hall, Anthony J. W. (2013) Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology, Volume 9 . Article no. 650. doi:10.1038/msb.2013.7

2012

Domijan, Mirela and Pécou, Élisabeth (2012) The interaction graph structure of mass-action reaction networks. Journal of Mathematical Biology, 65 . pp. 375-402. doi:10.1007/s00285-011-0462-0

2011

Domijan, Mirela and Rand, D. A. (David A.) (2011) Balance equations can buffer noisy and sustained environmental perturbations of circadian clocks. Interface Focus, Vol.1 (No.1). pp. 177-186. doi:10.1098/rsfs.2010.0007

2009

Domijan, Mirela and Kirkilionis, Markus (2009) Bistability and oscillations in chemical reaction networks. Journal of Mathematical Biology, Vol.59 (No.4). pp. 467-501. doi:10.1007/s00285-008-0234-7

Kirkilionis, Markus, Domijan, Mirela, Eigel, M., George, E., Li, Mike and Sbano, L. (2009) A definition of cellular interface problems. In: 9th International Workshop on Membrane Computing, Edinburgh, Scotland, July 28-31, 2008. Published in: Lecture Notes in Computer Science, Vol.5391 pp. 36-62. ISBN 978-3-540-95884-0. ISSN 0302-9743. doi:10.1007/978-3-540-95885-7_4

2008

Domijan, Mirela and Kirkilionis, Markus (2008) Graph theory and qualitative analysis of reaction networks. In: Annual European Conference on Complex Systems, Dresden, Germany, Oct 01-06, 2007. Published in: Networks and Heterogeneous Media , Vol.3 (No.2). pp. 295-322. ISSN 1556-1801.