2022

Crump, Ronald E., Huang, Ching-I, Spencer, Simon E. F., Brown, Paul E., Shampa, Chansy, Mwamba Miaka, Erick and Rock, Kat S. (2022) Modelling to infer the role of animals in gambiense human African trypanosomiasis transmission and elimination in the DRC. PLOS Neglected Tropical Diseases, 16 (7). e0010599. doi:10.1371/journal.pntd.0010599 ISSN 1935-2735.

Huang, Ching-I, Crump, Ronald E., Brown, Paul E., Spencer, Simon E. F., Mwamba Miaka, Erick, Shampa, Chansy, Keeling, Matthew James and Rock, Kat S. (2022) Identifying regions for enhanced control of gambiense sleeping sickness in the Democratic Republic of Congo. Nature Communications, 13 (1). 1448. doi:10.1038/s41467-022-29192-w ISSN 2041-1723.

Antillon, Marina, Huang, Ching-I, Crump, Ronald E., Brown, Paul E., Snijders, Rian, Mwamba Miaka, Erick, Keeling, Matthew James, Rock, Kat S. and Tediosi, Fabrizio (2022) Cost-effectiveness of sleeping sickness elimination campaigns in five settings of the Democratic Republic of Congo. Nature Communications, 13 . 1051. doi:10.1038/s41467-022-28598-w ISSN 2041-1723.

Rock, Kat S., Huang, Ching-I, Crump, Ronald E., Bessell, Paul R., Brown, Paul E., Tirados, Inaki, Solano, Philippe, Antillon, Marina, Picado, Albert, Mbainda, Severin, Darnas, Justin, Crowley, Emily, Torr, Steve J. and Peka, Mallaye (2022) Update of transmission modelling and projections of gambiense human African trypanosomiasis in the Mandoul focus, Chad. Infectious Diseases of Poverty, 11 (1). 11. doi:10.1186/s40249-022-00934-8 ISSN 2049-9957.

2021

Crump, Ronald E., Huang, Ching-I, Knock, Edward, Spencer, Simon E. F., Brown, Paul E., Mwamba Miaka, Erick, Shampa, Chansy, Keeling, Matthew James and Rock, Kat S. (2021) Quantifying epidemiological drivers of gambiense human African Trypanosomiasis across the Democratic Republic of Congo. PLoS Computational Biology, 17 (1). e1008532. doi:10.1371/journal.pcbi.1008532 ISSN 1553-7358.

2020

Rich-Griffin, Charlotte, Eichmann, Ruth, Reitz, Marco U., Hermann, Sophie, Woolley-Allen, Kate, Brown, Paul E., Wiwatdirekkul, Kate, Esteban, Eddi, Pasha, Asher, Kogel, Karl-Heinz, Provart, Nicholas J., Ott, Sascha and Schäfer, Patrick (2020) Regulation of cell type-specific immunity networks in Arabidopsis roots. The Plant Cell . tpc.00154.2020. doi:10.1105/tpc.20.00154 ISSN 1040-4651.

Whalley, Thomas, Dolton, Gary M., Brown, Paul E., Wall, Aaron, Wooldridge, Linda, Van Den Berg, Hugo, Fuller, Anna, Hopkins, Jade R., Crowther, Michael D., Attaf, Meriem, Knight, Robin R., Cole, David K., Peakman, Mark, Sewell, Andrew K. and Szomolay, Barbara (2020) GPU-accelerated discovery of pathogen derived molecular mimics of a T-cell insulin epitope. Frontiers in Immunology, 11 . 296. doi:10.3389/fimmu.2020.00296 ISSN 1664-3224.

2018

Stolk, Wilma A., Prada, Joaquín M., Smith, Morgan E., Kontoroupis, Periklis, de Vos, Anneke S., Touloupou, Panayiota, Irvine, Michael A., Brown, Paul E., Subramanian, Swaminathan, Kloek, Marielle, Michael, E., Hollingsworth, T. Déirdre and de Vlas, Sake J. (2018) Are alternative strategies required to accelerate the global elimination of lymphatic filariasis? Insights from mathematical models. Clinical Infectious Diseases, 66 (suppl_4). S260-S266. doi:10.1093/cid/ciy003 ISSN 1537-6591.

Polański, Krzysztof , Gao, Bo, Mason, Sam, Brown, Paul E., Ott, Sascha, Denby, Katherine J. and Wild, David L. (2018) Bringing numerous methods for expression and promoter analysis to a public cloud computing service. Bioinformatics, 34 (5). pp. 884-886. doi:10.1093/bioinformatics/btx692 ISSN 1367-4803.

2016

Domijan, Mirela, Brown, Paul E., Shulgin, Boris V. and Rand, D. A. (David A.) (2016) PeTTSy : a computational tool for perturbation analysis of complex systems biology models. BMC Bioinformatics, 17 (124). doi:10.1186/s12859-016-0972-2 ISSN 1471-2105.

Szomolay, Barbara, Liu, Jie, Brown, Paul E., Miles, John J., Clement, Mathew, Llewellyn-Lacey, Sian, Dolton, Garry, Ekeruche-Makinde, Julia, Lissina, Anya, Schauenburg, Andrea J., Sewell, Andrew K., Burrows, Scott R., Roederer, Mario, Price, David A., Wooldridge, Linda and Berg, Hugo van den (2016) Identification of human viral protein-derived ligands recognized by individual MHCI-restricted T-cell receptors. Immunology and Cell Biology, 94 . pp. 573-582. doi:10.1038/icb.2016.12 ISSN 0818-9641.

2015

Penfold, Christopher A., Shifaz, Ahmed, Brown, Paul E., Nicholson, Ann and Wild, David L. (2015) CSI : A nonparametric Bayesian approach to network inference from multiple perturbed time series gene expression data. Statistical Applications in Genetics and Molecular Biology, Volume 14 (Number 3). pp. 307-310. doi:10.1515/sagmb-2014-0082 ISSN 1544-6115.

2013

Brown, Paul E., Baxter, Laura, Hickman, Richard J., Beynon, Jim, Moore, Jonathan D. and Ott, Sascha (2013) MEME-LaB : motif analysis in clusters. Bioinformatics . doi:10.1093/bioinformatics/btt248 ISSN 1367-4803.

2012

Penfold, Christopher A., Brown, Paul E., Lawrence, Neil (Neil D.) and Goldman, Alastair S. H. (2012) Modeling meiotic chromosomes indicates a size dependent contribution of telomere clustering and chromosome rigidity to homologue juxtaposition. PLoS Computational Biology, Vol.8 (No.5). e1002496. doi:10.1371/journal.pcbi.1002496 ISSN 1553-7358.

2010

Edwards, Kieron D., Akman, Ozgur E., Knox, Kirsten, Lumsden, P. J., Thomson, Adrian W., Brown, Paul E., Pokhilko, Alexandra, Kozma-Bognar, Laszlo, Nagy, Ferenc, Rand, D. A. and Millar, A. J. (2010) Quantitative analysis of regulatory flexibility under changing environmental conditions. Molecular Systems Biology, Vol.6 (No.424). doi:10.1038/msb.2010.81 ISSN 1744-4292.

Akman, Ozgur E., Rand, D. A. (David A.), Brown, Paul E. and Millar, A. J. (Andrew J.) (2010) Robustness from flexibility in the fungal circadian clock. BMC Systems Biology, Vol.4 (No.88). doi:10.1186/1752-0509-4-88 ISSN 1752-0509.

2009

Salazar, Jose Domingo, Saithong, Treenut, Brown, Paul E., Foreman, Julia, Locke, James C. W., Halliday, Karen J., Carré, Isabelle A., Rand, D. A. (David A.) and Millar, A. J. (Andrew J.) (2009) Prediction of photoperiodic regulators from quantitative gene circuit models. Cell, Vol.139 (No.6). pp. 1170-1179. doi:10.1016/j.cell.2009.11.029 ISSN 1097-4172.