2020

Whalley, Thomas, Dolton, Gary M., Brown, Paul E., Wall, Aaron, Wooldridge, Linda, Van Den Berg, Hugo, Fuller, Anna, Hopkins, Jade R., Crowther, Michael D., Attaf, Meriem, Knight, Robin R., Cole, David K., Peakman, Mark, Sewell, Andrew K. and Szomolay, Barbara (2020) GPU-accelerated discovery of pathogen derived molecular mimics of a T-cell insulin epitope. Frontiers in Immunology . doi:10.3389/fimmu.2020.00296 (In Press)

2018

Stolk, Wilma A., Prada, Joaquín M., Smith, Morgan E., Kontoroupis, Periklis, de Vos, Anneke S., Touloupou, Panayiota, Irvine, Michael A., Brown, Paul E., Subramanian, Swaminathan, Kloek, Marielle, Michael, E., Hollingsworth, T. Déirdre and de Vlas, Sake J. (2018) Are alternative strategies required to accelerate the global elimination of lymphatic filariasis? Insights from mathematical models. Clinical Infectious Diseases, 66 (suppl_4). S260-S266. doi:10.1093/cid/ciy003

Polański, Krzysztof , Gao, Bo, Mason, Sam, Brown, Paul E., Ott, Sascha, Denby, Katherine J. and Wild, David L. (2018) Bringing numerous methods for expression and promoter analysis to a public cloud computing service. Bioinformatics, 34 (5). pp. 884-886. doi:10.1093/bioinformatics/btx692

2016

Domijan, Mirela, Brown, Paul E., Shulgin, Boris V. and Rand, D. A. (David A.) (2016) PeTTSy : a computational tool for perturbation analysis of complex systems biology models. BMC Bioinformatics, 17 (124). doi:10.1186/s12859-016-0972-2

Szomolay, Barbara, Liu, Jie, Brown, Paul E., Miles, John J., Clement, Mathew, Llewellyn-Lacey, Sian, Dolton, Garry, Ekeruche-Makinde, Julia, Lissina, Anya, Schauenburg, Andrea J., Sewell, Andrew K., Burrows, Scott R., Roederer, Mario, Price, David A., Wooldridge, Linda and Berg, Hugo van den (2016) Identification of human viral protein-derived ligands recognized by individual MHCI-restricted T-cell receptors. Immunology and Cell Biology, 94 . pp. 573-582. doi:10.1038/icb.2016.12

2015

Penfold, Christopher A., Shifaz, Ahmed, Brown, Paul E., Nicholson, Ann and Wild, David L. (2015) CSI : A nonparametric Bayesian approach to network inference from multiple perturbed time series gene expression data. Statistical Applications in Genetics and Molecular Biology, Volume 14 (Number 3). pp. 307-310. doi:10.1515/sagmb-2014-0082

2013

Brown, Paul E., Baxter, Laura, Hickman, Richard J., Beynon, Jim, Moore, Jonathan D. and Ott, Sascha (2013) MEME-LaB : motif analysis in clusters. Bioinformatics . doi:10.1093/bioinformatics/btt248

2012

Penfold, Christopher A., Brown, Paul E., Lawrence, Neil (Neil D.) and Goldman, Alastair S. H. (2012) Modeling meiotic chromosomes indicates a size dependent contribution of telomere clustering and chromosome rigidity to homologue juxtaposition. PLoS Computational Biology, Vol.8 (No.5). e1002496. doi:10.1371/journal.pcbi.1002496

2010

Edwards, Kieron D., Akman, Ozgur E., Knox, Kirsten, Lumsden, P. J., Thomson, Adrian W., Brown, Paul E., Pokhilko, Alexandra, Kozma-Bognar, Laszlo, Nagy, Ferenc, Rand, D. A. and Millar, A. J. (2010) Quantitative analysis of regulatory flexibility under changing environmental conditions. Molecular Systems Biology, Vol.6 (No.424). doi:10.1038/msb.2010.81

Akman, Ozgur E., Rand, D. A. (David A.), Brown, Paul E. and Millar, A. J. (Andrew J.) (2010) Robustness from flexibility in the fungal circadian clock. BMC Systems Biology, Vol.4 (No.88). doi:10.1186/1752-0509-4-88

2009

Salazar, Jose Domingo, Saithong, Treenut, Brown, Paul E., Foreman, Julia, Locke, James C. W., Halliday, Karen J., Carré, Isabelle A., Rand, D. A. (David A.) and Millar, A. J. (Andrew J.) (2009) Prediction of photoperiodic regulators from quantitative gene circuit models. Cell, Vol.139 (No.6). pp. 1170-1179. doi:10.1016/j.cell.2009.11.029