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Jump to: Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC) | Cancer Research UK (CRUK) | GlaxoSmithKline | Government of Ghana Education Trust | Great Britain. Department for Environment, Food and Rural Affairs (DEFRA) | Great Britain. Dept. for Environment, Food & Rural Affairs (DEFRA) | Leverhulme Trust (LT) | McLaughlin Postdoctoral Fellowship | Medical Research Council (Great Britain) (MRC) | National Institutes of Health (U.S.) (NIH) | Natural Environment Research Council (Great Britain) (NERC) | Polio Eradication Initiative | Polio Eradication Initiative through the European Office of the World Health Organization | RFBR | Scotland | Scotland. Scottish Government | Sixth Framework Programme (European Commission) (FP6) | University of Edinburgh | University of Warwick | University of Warwick Vice Chancellor Scholarship | University of Warwick. Institute of Advanced Study (IAS) | Wellcome Trust | Wellcome Trust (London, England)
Number of items: 52.
Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC)
Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645 ISSN 2167-9843.
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Lowry, Kym, Woodman, Andrew, Cook, Jonathan P. and Evans, David J. (2014) Recombination in enteroviruses is a biphasic replicative process involving the generation of greater-than genome length 'imprecise' intermediates. PLoS Pathogens, Volume 10 (Number 6). Article number e1004191. doi:10.1371/journal.ppat.1004191 ISSN 1553-7374.
Tuplin, Andrew, Evans, David J., Buckley, A., Jones, I. M. (Ian M.), Gould, E. and Gritsun, T. S. (2011) Replication enhancer elements within the open reading frame of tick-borne encephalitis virus and their evolution within the Flavivirus genus. Nucleic Acids Research, Vol.39 (No.16). pp. 7034-7048. doi:10.1093/nar/gkr237 ISSN 0305-1048.
Moore, Jonathan D., Jironkin, Aleksey, Chandler, Dave, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. Journal of General Virology, Vol.92 . pp. 156-161. doi:10.1099/vir.0.025965-0 ISSN 0022-1317.
Cancer Research UK (CRUK)
Mutocheluh, M., Hindle, L., Areste, C., Chanas, S. A., Butler, L. M., Lowry, Kym, Shah, K., Evans, David J. and Blackbourn, D. J. (2011) Kaposi's sarcoma-associated herpesvirus viral interferon regulatory factor-2 inhibits type 1 interferon signalling by targeting interferon-stimulated gene factor-3. Journal of General Virology, 92 (10). pp. 2394-2398. doi:10.1099/vir.0.034322-0 ISSN 0022-1317.
GlaxoSmithKline
Diviney, SinΓ©ad, Tuplin, Andrew, Struthers, Madeleine, Armstrong, Victoria, Elliott, Richard M., Simmonds, Peter and Evans, David J. (2008) A hepatitis C virus cis-acting replication element forms a long-range RNA-RNA interaction with upstream RNA sequences in NS5B. Journal of Virology, Vol.82 (No.18). pp. 9008-9022. doi:10.1128/JVI.02326-07 ISSN 0022-538X.
Government of Ghana Education Trust
Mutocheluh, M., Hindle, L., Areste, C., Chanas, S. A., Butler, L. M., Lowry, Kym, Shah, K., Evans, David J. and Blackbourn, D. J. (2011) Kaposi's sarcoma-associated herpesvirus viral interferon regulatory factor-2 inhibits type 1 interferon signalling by targeting interferon-stimulated gene factor-3. Journal of General Virology, 92 (10). pp. 2394-2398. doi:10.1099/vir.0.034322-0 ISSN 0022-1317.
Great Britain. Department for Environment, Food and Rural Affairs (DEFRA)
Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645 ISSN 2167-9843.
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Great Britain. Dept. for Environment, Food & Rural Affairs (DEFRA)
Moore, Jonathan D., Jironkin, Aleksey, Chandler, Dave, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. Journal of General Virology, Vol.92 . pp. 156-161. doi:10.1099/vir.0.025965-0 ISSN 0022-1317.
Leverhulme Trust (LT)
Puxty, Richard J., Millard, Andrew D., Evans, David J. and Scanlan, David J. (2016) Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology, 26 (12). pp. 1585-1589. doi:10.1016/j.cub.2016.04.036 ISSN 0960-9822.
McLaughlin Postdoctoral Fellowship
Yang, Y. (Yan), Yi, MinKyung, Evans, David J., Simmonds, Peter and Lemon, Stanley M. (2008) Identification of a Conserved RNA Replication Element (cre) within the 3D(pol)-Coding Sequence of Hepatoviruses. Journal of Virology, Volume 82 (Number 20). pp. 10118-10128. doi:10.1128/JVI.00787-08 ISSN 0022-538X.
Medical Research Council (Great Britain) (MRC)
Tuplin, Andrew, Struthers, Madeleine, Cook, Jonathan P., Bentley, Kirsten and Evans, David J. (2015) Inhibition of HCV translation by disrupting the structure and interactions of the viral CRE and 3' X-tail. Nucleic Acids Research, 43 (5). pp. 2914-2926. doi:10.1093/nar/gkv142 ISSN 0305-1048.
Lowry, Kym, Woodman, Andrew, Cook, Jonathan P. and Evans, David J. (2014) Recombination in enteroviruses is a biphasic replicative process involving the generation of greater-than genome length 'imprecise' intermediates. PLoS Pathogens, Volume 10 (Number 6). Article number e1004191. doi:10.1371/journal.ppat.1004191 ISSN 1553-7374.
Atkinson, Nicky J., Witteveldt, Jeroen, Evans, David J. and Simmonds, Peter (2014) The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication. Nucleic Acids Research, Volume 42 (Number 7). pp. 4527-4545. doi:10.1093/nar/gku075 ISSN 0305-1048.
Mutocheluh, M., Hindle, L., Areste, C., Chanas, S. A., Butler, L. M., Lowry, Kym, Shah, K., Evans, David J. and Blackbourn, D. J. (2011) Kaposi's sarcoma-associated herpesvirus viral interferon regulatory factor-2 inhibits type 1 interferon signalling by targeting interferon-stimulated gene factor-3. Journal of General Virology, 92 (10). pp. 2394-2398. doi:10.1099/vir.0.034322-0 ISSN 0022-1317.
Tuplin, Andrew, Evans, David J., Buckley, A., Jones, I. M. (Ian M.), Gould, E. and Gritsun, T. S. (2011) Replication enhancer elements within the open reading frame of tick-borne encephalitis virus and their evolution within the Flavivirus genus. Nucleic Acids Research, Vol.39 (No.16). pp. 7034-7048. doi:10.1093/nar/gkr237 ISSN 0305-1048.
Moore, Jonathan D., Jironkin, Aleksey, Chandler, Dave, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. Journal of General Virology, Vol.92 . pp. 156-161. doi:10.1099/vir.0.025965-0 ISSN 0022-1317.
Diviney, SinΓ©ad, Tuplin, Andrew, Struthers, Madeleine, Armstrong, Victoria, Elliott, Richard M., Simmonds, Peter and Evans, David J. (2008) A hepatitis C virus cis-acting replication element forms a long-range RNA-RNA interaction with upstream RNA sequences in NS5B. Journal of Virology, Vol.82 (No.18). pp. 9008-9022. doi:10.1128/JVI.02326-07 ISSN 0022-538X.
National Institutes of Health (U.S.) (NIH)
Yang, Y. (Yan), Yi, MinKyung, Evans, David J., Simmonds, Peter and Lemon, Stanley M. (2008) Identification of a Conserved RNA Replication Element (cre) within the 3D(pol)-Coding Sequence of Hepatoviruses. Journal of Virology, Volume 82 (Number 20). pp. 10118-10128. doi:10.1128/JVI.00787-08 ISSN 0022-538X.
Natural Environment Research Council (Great Britain) (NERC)
Puxty, Richard J., Millard, Andrew D., Evans, David J. and Scanlan, David J. (2016) Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology, 26 (12). pp. 1585-1589. doi:10.1016/j.cub.2016.04.036 ISSN 0960-9822.
Puxty, Richard John, Perez-Sepulveda, Blanca, Rihtman, Branko, Evans, David J., Millard, Andrew D. and Scanlan, David J. (2015) Spontaneous deletion of an βORFanageβ region facilitates host adaptation in a βphotosyntheticβ cyanophage. PLoS One, Volume 10 (Number 7). pp. 1-13. Article number e0132642. doi:10.1371/journal.pone.0132642 ISSN 1932-6203.
Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645 ISSN 2167-9843.
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Polio Eradication Initiative
Leitch, E. C. McWilliam, Bendig, J., Cabrerizo, M., Cardosa, J., Hyypia, T., Ivanova, O. E., Kelly, A., Kroes, A. C. M., Lukashev, A., MacAdam, A., McMinn, P., Roivainen, M., Trallero, G., Evans, David J. and Simmonds, P. (2009) Transmission networks and population turnover of echovirus 30. Journal of Virology, Vol.83 (No.5). pp. 2109-2118. doi:10.1128/JVI.02109-08 ISSN 0022-538X.
Polio Eradication Initiative through the European Office of the World Health Organization
Leitch, E. C. McWilliam, Cabrerizo, M., Cardosa, J., Harvala, H., Ivanova, O. E., Kroes, A. C. M., Lukashev, A., Muir, P., Odoom, J., Roivainen, M., Susi, P., Trallero, G., Evans, David J. and Simmonds, P. (2010) Evolutionary dynamics and temporal/geographical correlates of recombination in the human enterovirus enterovirus types 9, 11, and 30. Journal of Virology, Vol.84 (No.18). pp. 9292-9300. doi:10.1128/JVI.00783-10 ISSN 0022-538X.
RFBR
Leitch, E. C. McWilliam, Cabrerizo, M., Cardosa, J., Harvala, H., Ivanova, O. E., Kroes, A. C. M., Lukashev, A., Muir, P., Odoom, J., Roivainen, M., Susi, P., Trallero, G., Evans, David J. and Simmonds, P. (2010) Evolutionary dynamics and temporal/geographical correlates of recombination in the human enterovirus enterovirus types 9, 11, and 30. Journal of Virology, Vol.84 (No.18). pp. 9292-9300. doi:10.1128/JVI.00783-10 ISSN 0022-538X.
Scotland
Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645 ISSN 2167-9843.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Scotland. Scottish Government
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Sixth Framework Programme (European Commission) (FP6)
Tuplin, Andrew, Evans, David J., Buckley, A., Jones, I. M. (Ian M.), Gould, E. and Gritsun, T. S. (2011) Replication enhancer elements within the open reading frame of tick-borne encephalitis virus and their evolution within the Flavivirus genus. Nucleic Acids Research, Vol.39 (No.16). pp. 7034-7048. doi:10.1093/nar/gkr237 ISSN 0305-1048.
University of Edinburgh
McFadden, Nora, Arias, Armando, Dry, Inga, Bailey, Dalan, Witteveldt, Jeroen, Evans, David J., Goodfellow, Ian and Simmonds, Peter (2013) Influence of genome-scale RNA structure disruption on the replication of murine norovirus--similar replication kinetics in cell culture but attenuation of viral fitness in vivo. Nucleic Acids Research, Volume 41 (Number 12). pp. 6316-6331. doi:10.1093/nar/gkt334 ISSN 0305-1048.
University of Warwick
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Lowry, Kym, Woodman, Andrew, Cook, Jonathan P. and Evans, David J. (2014) Recombination in enteroviruses is a biphasic replicative process involving the generation of greater-than genome length 'imprecise' intermediates. PLoS Pathogens, Volume 10 (Number 6). Article number e1004191. doi:10.1371/journal.ppat.1004191 ISSN 1553-7374.
Mutocheluh, M., Hindle, L., Areste, C., Chanas, S. A., Butler, L. M., Lowry, Kym, Shah, K., Evans, David J. and Blackbourn, D. J. (2011) Kaposi's sarcoma-associated herpesvirus viral interferon regulatory factor-2 inhibits type 1 interferon signalling by targeting interferon-stimulated gene factor-3. Journal of General Virology, 92 (10). pp. 2394-2398. doi:10.1099/vir.0.034322-0 ISSN 0022-1317.
University of Warwick Vice Chancellor Scholarship
Puxty, Richard John, Perez-Sepulveda, Blanca, Rihtman, Branko, Evans, David J., Millard, Andrew D. and Scanlan, David J. (2015) Spontaneous deletion of an βORFanageβ region facilitates host adaptation in a βphotosyntheticβ cyanophage. PLoS One, Volume 10 (Number 7). pp. 1-13. Article number e0132642. doi:10.1371/journal.pone.0132642 ISSN 1932-6203.
University of Warwick. Institute of Advanced Study (IAS)
Puxty, Richard J., Millard, Andrew D., Evans, David J. and Scanlan, David J. (2016) Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology, 26 (12). pp. 1585-1589. doi:10.1016/j.cub.2016.04.036 ISSN 0960-9822.
Wellcome Trust
Leitch, E. C. McWilliam, Cabrerizo, M., Cardosa, J., Harvala, H., Ivanova, O. E., Kroes, A. C. M., Lukashev, A., Muir, P., Odoom, J., Roivainen, M., Susi, P., Trallero, G., Evans, David J. and Simmonds, P. (2010) Evolutionary dynamics and temporal/geographical correlates of recombination in the human enterovirus enterovirus types 9, 11, and 30. Journal of Virology, Vol.84 (No.18). pp. 9292-9300. doi:10.1128/JVI.00783-10 ISSN 0022-538X.
Leitch, E. C. McWilliam, Bendig, J., Cabrerizo, M., Cardosa, J., Hyypia, T., Ivanova, O. E., Kelly, A., Kroes, A. C. M., Lukashev, A., MacAdam, A., McMinn, P., Roivainen, M., Trallero, G., Evans, David J. and Simmonds, P. (2009) Transmission networks and population turnover of echovirus 30. Journal of Virology, Vol.83 (No.5). pp. 2109-2118. doi:10.1128/JVI.02109-08 ISSN 0022-538X.
Wellcome Trust (London, England)
Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645 ISSN 2167-9843.
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Atkinson, Nicky J., Witteveldt, Jeroen, Evans, David J. and Simmonds, Peter (2014) The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication. Nucleic Acids Research, Volume 42 (Number 7). pp. 4527-4545. doi:10.1093/nar/gku075 ISSN 0305-1048.
Witteveldt, Jeroen, Blundell, Richard, Maarleveld, Joris J., McFadden, Nora, Evans, David J. and Simmonds, Peter (2013) The influence of viral RNA secondary structure on interactions with innate host cell defences. Nucleic Acids Research, Volume 42 (Number 5). pp. 3314-3329. doi:10.1093/nar/gkt1291 ISSN 0305-1048.
McFadden, Nora, Arias, Armando, Dry, Inga, Bailey, Dalan, Witteveldt, Jeroen, Evans, David J., Goodfellow, Ian and Simmonds, Peter (2013) Influence of genome-scale RNA structure disruption on the replication of murine norovirus--similar replication kinetics in cell culture but attenuation of viral fitness in vivo. Nucleic Acids Research, Volume 41 (Number 12). pp. 6316-6331. doi:10.1093/nar/gkt334 ISSN 0305-1048.
Davis, M. (Matthew), Sagan, Selena M., Pezacki, John P., Evans, David J. and Simmonds, Peter (2008) Bioinformatic and physical characterizations of genome-scale ordered RNA structure in mammalian RNA viruses. Journal of Virology, Vol.82 (No.23). pp. 11824-11836. doi:10.1128/JVI.01078-08 ISSN 0022-538X.
Simmonds, Peter, Karakasiliotis, Ioannis, Bailey, Dalan, Chaudhry, Yasmin, Evans, David J. and Goodfellow, Ian G. (2008) Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses. Nucleic Acids Research, Vol.36 (No.8). pp. 2530-2546. doi:10.1093/nar/gkn096 ISSN 0305-1048.
This list was generated on Thu Apr 18 23:18:17 2024 BST.