2019

Jameson, Eleanor, Stephenson, Jason, Jones, Helen J., Millard, Andrew D., Kaster, K., Purdy, Kevin J., Airs, R., Murrell, J. C. (J. Colin) and Chen, Yin (2019) Deltaproteobacteria (Pelobacter) and Methanococcoides are responsible for choline-dependent methanogenesis in a coastal saltmarsh sediment. ISME Journal, 13 (2). pp. 277-289. doi:10.1038/s41396-018-0269-8 ISSN 1751-7362.

2018

Howat, Alexandra M., Vollmers, John, Taubert, Martin, Grob, Carolina, Dixon, Joanna L., Todd, Jonathan, Chen, Yin, Kaster, Anne-Kristin and Murrell, J. C. (J. Colin) (2018) Comparative genomics and mutational analysis reveals a novel XoxF-utilising methylotroph in the Roseobacter group isolated from the marine environment. Frontiers in Microbiology, 9 . 766. doi:10.3389/fmicb.2018.00766 ISSN 1664-302X.

2017

Taubert, Martin, Grob, Carolina, Howat, Alexandra M., Burns, Oliver J., Pratscher, Jennifer, Jehmlich, Nico, von Bergen, Martin, Richnow, Hans H., Chen, Yin and Murrell, J. C. (J. Colin) (2017) Methylamine as a nitrogen source for microorganisms from a coastal marine environment. Environmental Microbiology, 19 (6). pp. 2246-2257. doi:10.1111/1462-2920.13709 ISSN 1462-2920.

Jameson, Eleanor, Taubert, M., Coyotzi, S., Chen, Y., Eyice, O., Schafer, H., Murrell, J. C. (J. Colin), Neufelf, J. D. and Dumont, M. G. (2017) DNA-, RNA-, and protein-based stable-isotope probing for high-throughput biomarker analysis of active microorganisms. In: Streit, Wolfgang R. and Daniel, Rolf , (eds.) Metagenomics : Methods and Protocols, Methods in Molecular Biology. Methods in molecular biology . Clifton, N.J: Humana Press ; Springer, pp. 57-74. ISBN 9781493966912

2016

Lidbury, Ian, Kröber, Eileen, Zhang, Zhidong, Zhu, Yijun , Murrell, J. C. (J. Colin), Chen, Yin and Schäfer, Hendrik (2016) A mechanism for bacterial transformation of dimethylsulfide to dimethylsulfoxide : a missing link in the marine organic sulfur cycle. Environmental Microbiology, 18 . pp. 2754-2766. doi:10.1111/1462-2920.13354 ISSN 1462-2912.

Zanardini, E., May, Eric, Inkpen, Robert, Cappitelli, Francesca, Murrell, J. C. (J. Colin) and Purdy, Kevin J. (2016) Diversity of archaeal and bacterial communities on exfoliated sandstone from Portchester Castle (UK). International Biodeterioration & Biodegradation , 109 . pp. 78-87. doi:10.1016/j.ibiod.2015.12.021 ISSN 0964-8305.

Jameson, Eleanor, Doxey, Andrew C., Airs, Ruth, Purdy, Kevin J., Murrell, J. C. (J. Colin) and Chen, Yin (2016) Metagenomic data-mining reveals contrasting microbial populations responsible for trimethylamine formation in human gut and marine ecosystems. Microbial Genomics, 2 (9). doi:10.1099/mgen.0.000080 ISSN 2057-5858.

2015

Lidbury, Ian, Kimberley, George, Scanlan, David J., Murrell, J. C. (J. Colin) and Chen, Yin (2015) Comparative genomics and mutagenesis analyses of choline metabolism in the marine Roseobacter clade. Environmental Microbiology, 17 (12). pp. 5048-5062. doi:10.1111/1462-2920.12943 ISSN 1462-2912.

Grob, Carolina, Taubert, Martin, Howat, Alexandra M., Burns, Oliver J., Dixon, Joanna L., Richnow, Hans H., Jehmlich, Nico, von Bergen, Martin, Chen, Yin and Murrell, J. C. (J. Colin) (2015) Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph. Environmental Microbiology, 17 (10). pp. 4007-4018. doi:10.1111/1462-2920.12935 ISSN 1462-2912.

Taubert, Martin, Grob, Carolina, Howat, Alexandra M., Burns, Oliver J., Dixon, Joanna L., Chen, Yin and Murrell, J. C. (J. Colin) (2015) XoxFencoding an alternative methanol dehydrogenase is widespread in coastal marine environments. Environmental Microbiology, 17 (10). pp. 3937-3948. doi:10.1111/1462-2920.12896 ISSN 1462-2912.

Lidbury, Ian, Murrell, J. C. (J. Colin) and Chen, Yin (2015) Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium : implications for marine carbon and nitrogen cycling. The ISME Journal, 9 . pp. 760-769. doi:10.1038/ismej.2014.149 ISSN 1751-7362.

Wischer, Daniela, Kumaresan, Deepak, Johnston, Antonia, El Khawand, Myriam, Stephenson, Jason, Hillebrand-Voiculescu, Alexandra M., Chen, Yin and Murrell, J. C. (J. Colin) (2015) Bacterial metabolism of methylated amines and identification of novel methylotrophs in Movile Cave. The ISME Journal, 9 . pp. 195-206. doi:10.1038/ismej.2014.102 ISSN 1751-7362.

2014

Lidbury, Ian, Murrell, J. C. (J. Colin) and Chen, Yin (2014) Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria. Proceedings of the National Academy of Sciences of the United States of America, Volume 111 (Number 7). pp. 2710-2715. doi:10.1073/pnas.1317834111 ISSN 0027-8424.

Kumaresan, Deepak, Wischer, Daniela, Stephenson, Jason, Hillebrand-Voiculescu, Alexandra and Murrell, J. C. (J. Colin) (2014) Microbiology of Movile Cave—A chemolithoautotrophic ecosystem. Geomicrobiology Journal , Volume 31 (Number 3). pp. 186-193. doi:10.1080/01490451.2013.839764 ISSN 0149-0451.

2012

Cox, Michael J., Schäfer, Hendrik, Nightingale, Phillip D., McDonald, Ian R. and Murrell, J. C. (J. Colin) (2012) Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters. FEMS Microbiology Letters, Vol.334 (No.2). pp. 111-118. doi:10.1111/j.1574-6968.2012.02624.x ISSN 03781097.

Antony, C. P., Doronina, N. V., Boden, Rich, Trotsenko, Y. A., Shouche, Y. S. and Murrell, J. C. (J. Colin) (2012) Methylophaga lonarensis sp. nov., a moderately haloalkaliphilic methylotroph isolated from the soda lake sediments of a meteorite impact crater. International Journal of Systematic and Evolutionary Microbiology, Vol.62 (Pt.7). pp. 1613-1618. doi:10.1099/ijs.0.035089-0 ISSN 1466-5026.

Patel, Nisha A., Crombie, Andrew, Slade, Susan E., Thalassinos, Konstantinos, Hughes, Chris, Connolly, Joanne B., Langridge, James, Murrell, J. C. (J. Colin) and Scrivens, James H. (2012) Comparison of one- and two-dimensional liquid chromatography approaches in the label-free quantitative analysis of methylocella silvestris. Journal of Proteome Research, Vol.11 (No.9). pp. 4755-4763. doi:10.1021/pr300253s ISSN 1535-3893.

2011

(2011) Complete genome sequence of the aerobic marine methanotroph methylomonas methanica MC09. Journal of Bacteriology, Volume 193 (Number 24). pp. 7001-7002. doi:10.1128/JB.06267-11 ISSN 0021-9193.

Boden, Rich and Murrell, J. C. (J. Colin) (2011) Response to mercury (II) ions in Methylococcus capsulatus (Bath). FEMS Microbiology Letters, Vol.324 (No.2). pp. 106-110. doi:10.1111/j.1574-6968.2011.02395.x ISSN 0378-1097.

Chen, Yin, Patel, Nisha A., Crombie, Andrew, Scrivens, James H. and Murrell, J. C. (J. Colin) (2011) Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. Proceedings of the National Academy of Sciences, Vol.108 (No.43). pp. 17791-17796. doi:10.1073/pnas.1112928108 ISSN 0027-8424.

Kumaresan, Deepak, Stralis-Pavese, Nancy, Abell, Guy C. J., Bodrossy, Levente and Murrell, J. C. (J. Colin) (2011) Physical disturbance to ecological niches created by soil structure alters community composition of methanotrophs. Environmental Microbiology Reports, Volume 3 (Number 5). pp. 613-621. doi:10.1111/j.1758-2229.2011.00270.x ISSN 1758-2229.

Boden, Rich, Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2011) Dimethylsulfide is an energy source for the heterotrophic marine bacterium Sagittula stellata. FEMS Microbiology Letters, Vol.322 (No.2). pp. 188-193. doi:10.1111/j.1574-6968.2011.02349.x ISSN 0378-1097.

Boden, Rich, Ferriera, S., Johnson, J., Kelly, Donovan P., Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2011) Draft genome sequence of the chemolithoheterotrophic, halophilic methylotroph methylophaga thiooxydans DMS010. Journal of Bacteriology, Vol.193 (No.12). pp. 3154-3155. doi:10.1128/JB.00388-11 ISSN 0021-9193.

Clark, Corinna , Mendl, Mike, Jamieson, Jennifer, Arnone, Ashleigh, Waterman-Pearson, Avril and Murrell, J. C. (J. Colin) (2011) Do psychological and physiological stressors alter the acute pain response to castration and tail docking in lambs? Veterinary Anaesthesia and Analgesia, 38 (2). pp. 134-145. doi:10.1111/j.1467-2995.2011.00594.x ISSN 1467-2987.

Cunliffe, Michael, Upstill-Goddard, Robert C. and Murrell, J. C. (J. Colin) (2011) Microbiology of aquatic surface microlayers. FEMS Microbiology Reviews, Vol.35 (No.2). pp. 233-246. doi:10.1111/j.1574-6976.2010.00246.x ISSN 0168-6445.

Boden, Rich, Borodina, E., Wood, A. P., Kelly, Donovan P., Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2011) Purification and characterization of dimethylsulfide monooxygenase from hyphomicrobium sulfonivorans. Journal of Bacteriology, Vol.193 (No.5). pp. 1250-1258. doi:10.1128/JB.00977-10 ISSN 0021-9193.

Rahman, M. Tanvir, Crombie, Andrew, Moussard, Hélène, Chen, Y. (Yin) and Murrell, J. C. (J. Colin) (2011) Acetate repression of methane oxidation by supplemental methylocella silvestris in a peat soil microcosm. Applied and Environmental Microbiology, Volume 77 (Number 12). pp. 4234-4236. doi:10.1128/AEM.02902-10 ISSN 0099-2240.

Avrahami, S., Jia, Z., Neufeld, J. D., Murrell, J. C. (J. Colin), Conrad, R. and Kusel, K. (2011) Active Autotrophic Ammonia-Oxidizing Bacteria in Biofilm Enrichments from Simulated Creek Ecosystems at Two Ammonium Concentrations Respond to Temperature Manipulation. Applied and Environmental Microbiology, Vol.77 (No.20). pp. 7329-7338. doi:10.1128/AEM.05864-11 ISSN 0099-2240.

Chen, Yin and Murrell, J. C. (J. Colin) (2011) DNA stable isotope probing. In: Stable isotope probing and related technologies. Washington DC, USA: American Society for Microbiology, pp. 3-24. ISBN 978-1-555-81537-0

Crombie, Andrew and Murrell, J. C. (J. Colin) (2011) Development of a system for genetic manipulation of the facultative methanotroph methylocella silvestris BL2. In: Rosenzweig, A. C. and Ragsdale, Stephen W., (eds.) Methods in methane metabolism. Part B , Methanotrophy. Methods in enzymology, Volume 495 . Amsterdam, [Netherlands] ; Boston, [Mass.] : Elsevier/Academic Press, pp. 119-133. ISBN 9780123869050

Rahman, Md Tanvir , Crombie, Andrew, Chen, Yin, Stralis-Pavese, Nancy, Bodrossy, Levente, Meir, Patrick, McNamara, Niall P and Murrell, J. C. (J. Colin) (2011) Environmental distribution and abundance of the facultative methanotroph Methylocella. ISME Journal, Vol.5 (No.6). pp. 1061-1066. doi:10.1038/ismej.2010.190 ISSN 1751-7362.

Smith, Thomas J. and Murrell, J. C. (J. Colin) (2011) Mutagenesis of soluble methane monooxygenase. In: Rosenzweig, A. C. and Ragsdale, Stephen W., (eds.) Methods in methane metabolism. Part B , Methanotrophy. Methods in enzymology, Volume 495 . Amsterdam, [Netherlands] ; Boston, [Mass.] : Elsevier/Academic Press, pp. 135-147. ISBN 9780123869050

Boden, Rich, Cleland, David, Green, Peter N., Katayama, Yoko, Uchino, Yoshihito, Murrell, J. C. (J. Colin) and Kelly, Donovan P. (2011) Phylogenetic assessment of culture collection strains of Thiobacillus thioparus, and definitive 16S rRNA gene sequences for T. thioparus, T. denitrificans, and Halothiobacillus neapolitanus. Archives of Microbiology, Vol.194 (No.3). pp. 187-195. doi:10.1007/s00203-011-0747-0 ISSN 0302-8933.

Chen, Yin, Kumaresan, Deepak and Murrell, J. C. (J. Colin) (2011) Stable-isotope probing and its application in soil microbiology. In: Handbook of Soil Science (2nd Edition). CRC Press, pp. 30-38. ISBN 978-0-8493-3136-7

Chen, Yin, Dumont, Marc G., Neufeld, Joshua D. and Murrell, J. C. (J. Colin) (2011) Towards “focused” metagenomics : a case study combining DNA stable-isotope probing, multiple displacement amplification, and metagenomics. In: Handbook of Molecular Microbial Ecology I : Metagenomics and Complementary Approaches. Handbook of Molecular Microbial Ecology . NJ, USA: John Wiley & Sons Ltd., pp. 491-496. ISBN 9780470644799

2010

(2010) Genome sequence of the obligate methanotroph methylosinus trichosporium strain OB3b. Journal of Bacteriology, Vol.192 (No.24). pp. 6497-6498. doi:10.1128/JB.01144-10

Krentz, Benjamin D., Mulheron, Heidi J., Semrau, Jeremy D., DiSpirito, Alan A., Bandow, Nathan L., Haft, Daniel H., Vuilleumier, Stephane, Murrell, J. C. (J. Colin), McEllistrem, Marcus T., Hartsel, Scott C. and Gallagher, Warren H. (2010) A comparison of methanobactins from Methylosinus trichosporium OB3b and Methylocystis strain SB2 predicts methanobactins are synthesized from diverse peptide precursors modified to create a common core for binding and reducing copper ions. Biochemistry, Vol.49 (No.47). pp. 10117-10130. doi:10.1021/bi1014375 ISSN 0006-2960.

Antony, Chakkiath Paul, Kumaresan, Deepak, Ferrando, Lucia, Boden, Rich, Moussard, Hélène, Scavino, Ana Fernández, Shouche, Yogesh S and Murrell, J. C. (J. Colin) (2010) Active methylotrophs in the sediments of Lonar Lake, a saline and alkaline ecosystem formed by meteor impact. ISME Journal, Volume 4 (Number 11). pp. 1470-1480. doi:10.1038/ismej.2010.70 ISSN 1751-7362.

Boden, Rich, Kelly, Donovan P., Murrell, J. C. (J. Colin) and Schäfer, Hendrik (2010) Oxidation of dimethylsulfide to tetrathionate by Methylophaga thiooxidans sp. nov.: a new link in the sulfur cycle. Environmental Microbiology, Vol.12 (No.10). pp. 2688-2699. doi:10.1111/j.1462-2920.2010.02238.x ISSN 1462-2912.

Tamas, Ivica, Dedysh, Svetlana N., Liesack, Werner, Stott, Matthew B., Alam, Maqsudul, Murrell, J. C. (J. Colin) and Dunfield, Peter F. (2010) Complete genome sequence of Beijerinckia indica subsp indica. Journal of Bacteriology, Vol.192 (No.17). pp. 4532-4533. doi:10.1128/JB.00656-10 ISSN 0021-9193.

Chen, Yin and Murrell, J. C. (J. Colin) (2010) Geomicrobiology: methanotrophs in moss. Nature Geoscience, Vol.3 (No.9). pp. 595-596. ISSN 1752-0894

Chen, Yin, Crombie, Andrew, Rahman, M. Tanvir, Dedysh, Svetlana N., Liesack, Werner, Stott, Matthew B., Alam, Maqsudul, Theisen, Andreas R., Murrell, J. C. (J. Colin) and Dunfield, Peter F. (2010) Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2. Journal of Bacteriology, Vol.192 (No.14). pp. 3840-3841. doi:10.1128/JB.00506-10 ISSN 0021-9193.

Chen, Yin, Scanlan, Julie, Song, Lijiang, Crombie, Andrew, Rahman, M. Tanvir, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2010) Gamma-Glutamylmethylamide Is an Essential Intermediate in the Metabolism of Methylamine by Methylocella silvestris. Applied and Environmental Microbiology, Vol.76 (No.13). pp. 4530-4537. doi:10.1128/AEM.00739-10 ISSN 0099-2240.

Chen, Yin, McAleer, Kathryn L. and Murrell, J. C. (J. Colin) (2010) Monomethylamine as a nitrogen source for a nonmethylotrophic bacterium, Agrobacterium tumefaciens. Applied and Environmental Microbiology, Vol.76 (No.12). pp. 4102-4104. doi:10.1128/AEM.00469-10 ISSN 0099-2240.

Jiang, Hao, Chen, Yin, Jiang, Peixia, Zhang, Chong, Smith, Thomas J., Murrell, J. C. (J. Colin) and Xing, Xin-Hui (2010) Methanotrophs: multifunctional bacteria with promising applications in environmental bioengineering. Biochemical Engineering Journal, Vol.49 (No.3). pp. 277-288. doi:10.1016/j.bej.2010.01.003

Chen, Yin and Murrell, J. C. (J. Colin) (2010) When metagenomics meets stable-isotope probing: progress and perspectives. Trends in Microbiology, Vol.18 (No.4). pp. 157-163. doi:10.1016/j.tim.2010.02.002

Cunliffe, Michael and Murrell, J. C. (J. Colin) (2010) Eukarya 18S rRNA gene diversity in the sea surface microlayer: implications for the structure of the neustonic microbial loop. ISME Journal, Vol.4 (No.3). pp. 455-458. doi:10.1038/ismej.2009.133

Cébron, Aurélie, Louvel, Brice, Faure, Pierre, France-Lanord, Christian, Chen, Yin, Murrell, J. C. (J. Colin) and Leyval, Corinne (2010) Root exudates modify bacterial diversity of phenanthrene degraders in PAH-polluted soil but not phenanthrene degradation rates. Environmental Microbiology, Vol.13 (No.3). pp. 722-736. doi:10.1111/j.1462-2920.2010.02376.x ISSN 1462-2912.

Xing, Xin-Hui, Jiang, Hao, Jiang, Peixia, Zhang, Chong, Chen, Yin and Murrell, J. C. (J. Colin) (2010) Bioengineering of methanotrophic consortia for reduction of methane emission in coal mines. Journal of Biotechnology, Vol.150 (Suppl. 1). pp. 53-54. doi:10.1016/j.jbiotec.2010.08.142 ISSN 0168-1656.

Xing, Xin-Hui, Jiang, Hao, Jiang, Peixia, Zhang, Chong, Chen, Yin and Murrell, J. C. (J. Colin) (2010) Bioengineering of methanotrophic consortia for reduction of methane emission in coal mines. In: 14th International Biotechnology Symposium and Exhibition (IBS-2008), Rimini, Italy, 14-18 Sep 2010. Published in: Journal of Biotechnology, Vol.150 (Suppl.1). S541-S542. doi:10.1016/j.jbiotec.2010.09.892 ISSN 0168-1656.

Chen, Yin and Murrell, J. C. (J. Colin) (2010) Ecology of aerobic methanotrophs and their role in methane cycling. In: Handbook of hydrocarbon and lipid microbiology. Handbook of hydrocarbon and lipid microbiology, Part 28 . Heidelberg: Springer, pp. 3067-3076. ISBN 978-3-540-77584-3

Chen, Yin, Neufeld, Josh D., Dumont, Marc G., Friedrich, Michael W. and Murrell, J. C. (J. Colin) (2010) Metagenomic Analysis of Isotopically Enriched DNA. In: Metagenomics: Methods and Protocols. Methods in Molecular Biology, Vol.668 . New York: Humana Press, Inc., pp. 67-75. ISBN 978-1-60761-822-5

2009

Scanlan, Julie, Dumont, Marc G. and Murrell, J. C. (J. Colin) (2009) Involvement of MmoR and MmoG in the transcriptional activation of soluble methane monooxygenase genes in Methylosinus trichosporium OB3b. FEMS Microbiology Letters, Vol.301 (No.2). pp. 181-187. doi:10.1111/j.1574-6968.2009.01816.x ISSN 0378-1097.

Bengtson, Per, Basiliko, Nathan, Dumont, Marc G., Hills, Melissa, Murrell, J. C. (J. Colin), Roy, Real and Grayston, Sue J. (2009) Links between methanotroph community composition and CH4 oxidation in a pine forest soil. FEMS Microbiology Ecology, Vol.70 (No.3). pp. 356-366. doi:10.1111/j.1574-6941.2009.00751.x ISSN 0168-6496.

Cunliffe, Michael, Whiteley, Andrew S., Newbold, Lindsay, Oliver, Anna, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2009) Comparison of bacterioneuston and bacterioplankton dynamics during a phytoplankton bloom in a fjord mesocosm. Applied and Environmental Microbiology, Vol.75 (No.22). pp. 7173-7181. doi:10.1128/AEM.01374-09 ISSN 0099-2240.

Han, Bing, Chen, Yin, Abell, Guy, Jiang, Hao, Bodrossy, Levente, Zhao, Jiangang, Murrell, J. C. (J. Colin) and Xing, Xin-Hui (2009) Diversity and activity of methanotrophs in alkaline soil from a Chinese coal mine. FEMS Microbiology Ecology, Vol.70 (No.2 Sp. Iss. SI). pp. 196-207. doi:10.1111/j.1574-6941.2009.00707.x ISSN 0168-6496.

Cunliffe, Michael, Salter, Matthew, Mann, Paul J., Whiteley, Andrew S., Upstill-Goddard, Robert C. and Murrell, J. C. (J. Colin) (2009) Dissolved organic carbon and bacterial populations in the gelatinous surface microlayer of a Norwegian fjord mesocosm. FEMS Microbiology Letters, Vol.299 (No.2). pp. 248-254. doi:10.1111/j.1574-6968.2009.01751.x ISSN 0378-1097.

Moussard, Hélène, Stralis-Pavese, Nancy, Bodrossy, Levente, Neufeld, Josh D. and Murrell, J. C. (J. Colin) (2009) Identification of active methylotrophic bacteria inhabiting surface sediment of a marine estuary. Environmental Microbiology Reports, Vol.1 (No.5). pp. 424-433. doi:10.1111/j.1758-2229.2009.00063.x ISSN 1758-2229.

Singh, Brajesh K., Tate, Kevin R., Ross, Des J., Singh, Jagrati, Dando, John, Thomas, Nadine, Millard, Peter and Murrell, J. C. (J. Colin) (2009) Soil methane oxidation and methanotroph responses to afforestation of pastures with Pinus radiata stands. Soil Biology & Biochemistry, Vol.41 (No.10). pp. 2196-2205. doi:10.1016/j.soilbio.2009.08.004 ISSN 0038-0717.

Kumaresan, Deepak, Abell, Guy C. J., Bodrossy, Levente, Stralis-Pavese, Nancy and Murrell, J. C. (J. Colin) (2009) Spatial and temporal diversity of methanotrophs in a landfill cover soil are differentially related to soil abiotic factors. Environmental Microbiology Reports, Vol.1 (No.5). pp. 398-407. doi:10.1111/j.1758-2229.2009.00059.x ISSN 1758-2229.

Murrell, J. C. (J. Colin) and Jetten, Mike S. M. (2009) The microbial methane cycle. Environmental Microbiology Reports, Vol.1 (No.5). pp. 279-284. doi:10.1111/j.1758-2229.2009.00089.x

Chen, Yin, Wu, Liqin, Boden, Rich, Hillebrand, Alexandra, Kumaresan, Deepak, Moussard, Helene, Baciu, Mihai, Lu, Yahai and Murrell, J. C. (J. Colin) (2009) Life without light: microbial diversity and evidence of sulfur- and ammonium-based chemolithotrophy in Movile Cave. ISME Journal, Vol.3 (No.9). pp. 1093-1104. doi:10.1038/ismej.2009.57 ISSN 1751-7362.

Cunliffe, Michael and Murrell, J. C. (J. Colin) (2009) The sea-surface microlayer is a gelatinous biofilm. ISME Journal, Vol.3 (No.9). pp. 1001-1003. doi:10.1038/ismej.2009.69

Patel, Vibhuti J., Thalassinos, Konstantinos, Slade, Susan E., Connolly, Joanne B., Crombie, Andrew, Murrell, J. C. (J. Colin) and Scrivens, James H. (2009) A comparison of labeling and label-free mass spectrometry-based proteomics approaches. Journal of Proteome Research, Vol.8 (No.7). pp. 3752-3759. doi:10.1021/pr900080y ISSN 1535-3893.

Degelmann, Daniela M., Kolb, Steffen, Dumont, Marc G., Murrell, J. C. (J. Colin) and Drake, Harold L. (2009) Enterobacteriaceae facilitate the anaerobic degradation of glucose by a forest soil. FEMS Microbiology Ecology, Vol.68 (No.3). pp. 312-319. doi:10.1111/j.1574-6941.2009.00681.x ISSN 0168-6496.

Han, Bing, Su, Tao, Wu, Hao, Gou, Zhongxuan, Xing, Xin-Hui, Jiang, Hao, Chen, Yin, Li, Xin and Murrell, J. C. (J. Colin) (2009) Paraffin oil as a "methane vector" for rapid and high cell density cultivation of Methylosinus trichosporium OB3b. Applied Microbiology and Biotechnology, Vol.83 (No.4). pp. 669-677. doi:10.1007/s00253-009-1866-2 ISSN 0175-7598.

Vishwakarma, Pranjali, Dumont, Marc G., Bodrossy, L., Stralis-Pavese, N., Murrell, J. C. (J. Colin) and Dubey, Suresh K. (2009) Ecological and molecular analyses of the rhizospheric methanotroph community in tropical rice soil: effect of crop phenology and land-use history. Current Science, Vol.96 (No.8). pp. 1082-1089. ISSN 0011-3891.

Ali, Hanif and Murrell, J. C. (J. Colin) (2009) Development and validation of promoter-probe vectors for the study of methane monooxygenase gene expression in Methylococcus capsulatus Bath. Microbiology, Vol.155 (No.3). pp. 761-771. doi:10.1099/mic.0.021816-0 ISSN 1350-0872.

Murrell, J. C. (J. Colin) and Smith, Thomas J. (2009) Microbial biotechnology meets environmental microbiology. Microbial Biotechnology, Volume 2 (Number 2). pp. 142-143. doi:10.1111/j.1751-7915.2009.00090_11.x ISSN 1751-7907.

Chen, Yin, Vohra, Jyotsna and Murrell, J. C. (J. Colin) (2009) Applications of DNA-Stable Isotope Probing in Bioremediation Studies. In: Bioremediation: methods and protocols. Methods in Molecular Biology, Vol.599 . New York: Humana Press, Inc., pp. 129-139. ISBN 978-1607-6143-88

Cunliffe, Michael, Harrison, Emma, Salter, Matthew, Schaefer, Hendrik, Upstill-Goddard, Robert C. and Murrell, J. C. (J. Colin) (2009) Comparison and validation of sampling strategies for the molecular microbial analysis of surface microlayers. Aquatic Microbial Ecology, Vol.57 (No.1). pp. 69-77. doi:10.3354/ame01330 ISSN 0948-3055.

2008

Reshetnikov, Alexander S., Rozova, Olga N., Khmelenina, V. N. (Valentina Nikolaevna), Mustakhimov, Ildar I., Beschastny, Alexander P., Murrell, J. C. (J. Colin) and Trotsenko, Yuri A. (2008) Characterization of the pyrophosphate-dependent 6-phosphofructokinase from Methylococcus capsulatus Bath. FEMS Microbiology Letters, Volume 288 (Number 2). pp. 202-210. doi:10.1111/j.1574-6968.2008.01366.x ISSN 0378-1097.

Jensen, Sigmund, Neufeld, Josh D., Birkeland, Nils-Kare, Hovland, M. (Martin) and Murrell, J. C. (J. Colin) (2008) Insight into the microbial community structure of a Norwegian deep-water coral reef environment. Deep-Sea Research. Part 1: Oceanographic Research Papers, Volume 55 (Number 11). pp. 1554-1563. doi:10.1016/j.dsr.2008.06.008 ISSN 0967-0637.

Jensen, Sigmund, Neufeld, Josh D., Birkeland, Nils-Kare, Hovland, M. (Martin) and Murrell, J. C. (J. Colin) (2008) Methane assimilation and trophic interactions with marine Methylomicrobium in deep-water coral reef sediment off the coast of Norway. FEMS Microbiology Ecology, Volume 66 (Number 2). pp. 320-330. doi:10.1111/j.1574-6941.2008.00575.x ISSN 0168-6496.

Neufeld, Josh D. , Boden, Rich, Moussard, Hélène, Schäfer, Hendrik and Murrell, J. C. (J. Colin) (2008) Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment. Applied and Environmental Microbiology, Vol.74 (No.23). pp. 7321-7328. doi:10.1128/AEM.01266-08 ISSN 0099-2240.

Chen, Yin, Dumont, Marc G., Neufeld, Josh D., Bodrossy, Levente, Stralis-Pavese, Nancy, McNamara, Niall P., Ostle, Nick, Briones, Maria J. I. and Murrell, J. C. (J. Colin) (2008) Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands. Environmental Microbiology, Vol.10 (No.10). pp. 2609-2622. doi:10.1111/j.1462-2920.2008.01683.x ISSN 1462-2912.

Chen, Yin, McNamara, Niall P., Dumont, Marc G., Bodrossy, Levente, Stralis-Pauese, Nancy and Murrell, J. C. (J. Colin) (2008) The impact of burning and Calluna removal on below-ground methanotroph diversity and activity in a peatland soil. Applied Soil Ecology, Vol.40 (No.2). pp. 291-298. doi:10.1016/j.apsoil.2008.05.008 ISSN 0929-1393.

Cunliffe, Michael, Schaefer, Hendrik, Harrison, E. (Emma), Cleave, Simon, Upstill-Goddard, R. C. (Robert C.) and Murrell, J. C. (J. Colin) (2008) Phylogenetic and functional gene analysis of the bacterial and archaeal communities associated with the surface microlayer of an estuary. ISME Journal, Volume 2 (Number 7). pp. 776-789. doi:10.1038/ismej.2008.28 ISSN 1751-7362.

Mustakhimov, Ildar I., Rozova, Olga N., Reshetnikov, Alexander S., Khmelenina, V. N. (Valentina Nikolaevna), Murrell, J. C. (J. Colin) and Trotsenko, Yuri A. (2008) Characterization of the recombinant diaminobutyric acid acetyltransferase from Methylophaga thalassica and Methylophaga alcalica. FEMS Microbiology Letters, Vol.283 (No.1). pp. 91-96. doi:10.1111/j.1574-6968.2008.01156.x ISSN 0378-1097.

Neufeld, Josh D., Chen, Yin, Dumont, Marc G. and Murrell, J. C. (J. Colin) (2008) Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics. Environmental Microbiology, Vol.10 (No.6). pp. 1526-1535. doi:10.1111/j.1462-2920.2008.01568.x ISSN 14622912.

Hamberger, Alexandra, Horn, Marcus A., Dumont, Marc G., Murrell, J. C. (J. Colin) and Drake, Harold L. (2008) Anaerobic consumers of monosaccharides in a moderately acidic fen. Applied and Environmental Microbiology, Vol.74 (No.10). pp. 3112-3120. doi:10.1128/AEM.00193-08 ISSN 0099-2240.

Murrell, J. C. (J. Colin), Semrau, Jeremy D. and DiSpirito, Alan A. (2008) In memoriam: Professor Sir Howard Dalton, FRS (1944-2008). Trends in Microbiology, Vol.16 (No.5). p. 189. doi:10.1016/j.tim.2008.03.002 ISSN 0966-842X.

Semrau, Jeremy D., DiSpirito, Alan A. and Murrell, J. C. (J. Colin) (2008) Life in the extreme : thermoacidophilic methanotrophy. Trends in Microbiology, Vol.16 (No.5). pp. 190-193. doi:10.1016/j.tim.2008.02.004 ISSN 0966-842X.

Muhling, Martin, Woolven-Allen, John, Murrell, J. C. (J. Colin) and Joint, Ian (2008) Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities. ISME Journal, Volume 2 (Number 4). pp. 379-392. doi:10.1038/ismej.2007.97 ISSN 1751-7362.

McDonald, Ian R., Bodrossy, Levente, Chen, Yin and Murrell, J. C. (J. Colin) (2008) Molecular ecology techniques for the study of aerobic methanotrophs. Applied and Environmental Microbiology, Vol.74 (No.5). pp. 1305-1315. doi:10.1128/AEM.02233-07

Chen, Y. (Yin), Dumont, Marc G., McNamara, Niall P., Chamberlain, P. M. (Paul M.), Bodrossy, Levente, Stralis-Pavese, Nancy and Murrell, J. C. (J. Colin) (2008) Diversity of the active methanotrophic community in acidic peatlands as assessed by mRNA and SIP-PLFA analyses. Environmental Microbiology, Vol.10 (No.2). pp. 446-459. doi:10.1111/j.1462-2920.2007.01466.x ISSN 1462-2912.

Hery, Marina, Singer, Andrew C., Kumaresan, Deepak, Bodrossy, Levente, Stralis-Pavese, Nancy, Prosser, James I. (James Ivor), Thompson, Ian P. and Murrell, J. C. (J. Colin) (2008) Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil. The ISME Journal, Vol.2 (No.1). pp. 92-104. doi:10.1038/ismej.2007.66 ISSN 1751-7362.

Trotsenko, Yuri A. and Murrell, J. C. (J. Colin) (2008) Metabolic aspects of aerobic obligate methanotrophy. Advances in Applied Microbiology, Vol.63 . pp. 183-229. doi:10.1016/S0065-2164(07)00005-6

2007

Cebron, Aurelie, Bodrossy, Levente, Chen, Yin, Singer, Andrew C., Thompson, Ian P., Prosser, James I. and Murrell, J. C. (J. Colin) (2007) Identity of active methanotrophs in landfill cover soil as revealed by DNA-stable isotope probing. FEMS Microbiology Ecology, Vol.62 (No. 1). pp. 12-23. doi:10.1111/j.1574-6941.2007.00368.x ISSN 0168-6496.

Borodina, Elena, Nichol, Tim, Dumont, Marc G., Smith, Thomas J. and Murrell, J. C. (J. Colin) (2007) Mutagenesis of the "Leucine gate" to explore the basis of catalytic versatility in soluble methane monooxygenase. Applied and Environmental Microbiology, Vol.73 (No.20). pp. 6460-6467. doi:10.1128/AEM.00823-07 ISSN 0099-2240.

Neufeld, Josh D., Schäfer, Hendrik, Cox, Michael J., Boden, Rich, McDonald, Ian R. and Murrell, J. C. (J. Colin) (2007) Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism. ISME Journal, Vol.1 (No.6). pp. 480-491. doi:10.1038/ismej.2007.65 ISSN 1751-7362.

Singh, Brajesh K., Tate, Kevin R., Kolipaka, Gokul, Hedley, Carolyn B., Macdonald, Catriona A., Millard, Peter and Murrell, J. C. (J. Colin) (2007) Effect of afforestation and reforestation of pastures on the activity and population dynamics of methanotrophic bacteria. Applied and Environmental Microbiology, Vol.73 (No.16). pp. 5153-5161. doi:10.1128/AEM.00620-07 ISSN 0099-2240.

Neufeld, Josh D. and Murrell, J. C. (J. Colin) (2007) Witnessing the last supper of uncultivated microbial cells with Raman-FISH. ISME Journal, Vol.1 (No.4). pp. 269-270. doi:10.1038/ismej.2007.55

Neufeld, Josh D., Wagner, Michael and Murrell, J. C. (J. Colin) (2007) Who eats what, where and when? Isotope-labelling experiments are coming of age. ISME Journal, Vol.1 (No.2). pp. 103-110. doi:10.1038/ismej.2007.30

Neufeld, Josh D., Dumont, Marc G., Vohra, Jyotsna and Murrell, J. C. (J. Colin) (2007) Methodological considerations for the use of stable isotope probing in microbial ecology. Microbial Ecology, Vol.53 (No.3). pp. 435-442. doi:10.1007/s00248-006-9125-x ISSN 0095-3628.

Jamshad, Mohammed, Murrell, J. C. (J. Colin) and Fülöp, Vilmos (2007) Purification and crystallization of the hydroxylase component of the methanesulfonate monooxygenase from Methylosulfonomonas methylovora strain M2. Protein Expression and Purification, Vol.52 (No.2). pp. 472-477. doi:10.1016/j.pep.2006.11.001 ISSN 1046-5928.

Cebron, Aurelie, Bodrossy, Levente, Stralis-Pavese, Nancy, Singer, Andrew C., Thompson, Ian P., Prosser, James I. and Murrell, J. C. (J. Colin) (2007) Nutrient amendments in soil DNA stable isotope probing experiments reduce the observed methanotroph diversity. Applied and Environmental Microbiology, Vol.73 (No.3). pp. 798-807. doi:10.1128/AEM.01491-06 ISSN 0099-2240.

Schafer, Hendrik, Miller, Laurence G., Oremland, Ronald S. and Murrell, J. C. (J. Colin) (2007) Bacterial cycling of methyl halides. Advances in Applied Microbiology, Volume 61 . pp. 307-346. doi:10.1016/S0065-2164(06)61009-5

Neufeld, Josh D., Vohra, Jyotsna, Dumont, Marc G., Lueders, Tillmann, Manefield, Mike, Friedrich, Michael W. and Murrell, J. C. (J. Colin) (2007) DNA stable-isotope probing. Nature, Volume 2 (Number 4). pp. 860-866. doi:10.1038/nprot.2007.109 ISSN 1754-2189.

Chen, Yin, Dumont, Marc G., Cebron, Aurelie and Murrell, J. C. (J. Colin) (2007) Identification of active methanotrophs in a landfill cover soil through detection of expression of 16S rRNA and functional genes. Environmental Microbiology, Volume 9 (Number 11). pp. 2855-2869. doi:10.1111/j.1462-2920.2007.01401.x ISSN 1462-2912.

2006

Ali, Hanif, Scanlan, Julie, Dumont, Marc G. and Murrell, J. C. (J. Colin) (2006) Duplication of the mmoX gene in Methylosinus sporium: cloning, sequencing and mutational analysis. MICROBIOLOGY-SGM, 152 (Part 10). pp. 2931-2942. doi:10.1099/mic.0.29031-0 ISSN 1350-0872.

Dumont, Marc G., Radajewski, Stefan M., Miguez, Carlos B., McDonald, Ian R. and Murrell, J. C. (J. Colin) (2006) Identification of a complete methane monooxygenase operon from soil by combining stable isotope probing and metagenomic analysis. ENVIRONMENTAL MICROBIOLOGY, 8 (7). pp. 1240-1250. doi:10.1111/j.1462-2920.2006.01018.x ISSN 1462-2912.