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Jump to: Action Medical Research (AMR) | Agence nationale de recherches sur le SIDA (France) (ANRS) | BBS | BBSRC David Phillips Research Fellowship | BBSRC REI | BioSim | BioSim Network of Excellence, European Union | Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC) | Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC) | British Heart Foundation | Calouste Gulbenkian Foundation | Cancer Research UK (CRUK) | Centre for Integrative and Systems Biology (CSBE) | Centros de Matematica da Universidade do Minho e da Universidade do Porto | EPSRC | EU | Engineering and Physical Sciences Research Council (EPSRC) | European Commission (EC) | European Research Area Network (ERA-NET) | European Science Foundation (ESF) | European Union | European Union (EU) | European Union BIOSIM Network | European Union Biomedical Simulations and Imaging Laboratory Network | FCT | Foundation for Polish Science [Fundacja na rzecz Nauki Polskiej] (FNP) | Fundação Calouste Gulbenkian (FCG) | Fundação para a Ciência e a Tecnologia (FCT) | Gatsby Charitable Foundation (GCF) | Human Frontiers Science Program (HFSP) | Instituto Politécnico do Porto (IPP) | Instituto de Engenharia de Sistemas e Computadores do Porto (INESC) | L'Oréal (Firm) | Manchester Academic Health Sciences Centre (MAHSC) | March of Dimes Birth Defects Foundation | Medical Research Council (Canada) (MRC) | Medical Research Council (Great Britain) (MRC) | Medical Research Council (MRC) | Ministerio da Ciencia e da Tecnologia | Ministerio da Ciencia e da Tecnologia and Centros de Matematica da Universidade do Minho e da Universidade do Porto | National Institute for Health Research (Great Britain) (NIHR) | National Institutes of Health (U.S.) (NIH) | National Science Foundation (U.S.) (NSF) | Norges forskningsråd [Norwegian Research Council] | Norges forskningsråd [Research Council of Norway] (NF) | PAPIIT (Programa de Apoyo a Proyectos de Investigacion e Innovacion Tecnologica, Mexico) | POCTI | PRAXIS (Organization) | PRODYN-ESF | Portugal. Ministério da Ciência e da Tecnologia (MCT) | Prof. John Glover Memorial Postdoctoral Fellowship | Professor John Glover Memorial Postdoctoral Fellowship | Professor John Glover Memorial Research Fellowship | Royal Society (Great Britain) | Royal Society/Wolfson Merit Award | SERC | Science and Engineering Research Council (Great Britain) (SERC) | Seventh Framework Programme (European Commission) (FP7) | Sixth Framework Programme (European Commission) (FP6) | Thailand | The Prof. John Glover Memorial Postdoctoral Fellowship | Unesco | Universidade do Minho (UdM) | Universidade do Porto (UP) | Universidade do Porto. Centro de Matemática Aplicada (CMA) | University Hospitals Coventry and Warwickshire NHS Trust | University of Liverpool | University of Warwick | University of Warwick. Department of Statistics | Warwick Medical School | Wellcome Trust | Wellcome Trust (London, England) | Wolfson Foundation | Wolfson Foundation (WF)
Number of items: 167.
Action Medical Research (AMR)
McCloskey, Conor, Rada, Cara, Bailey, Elizabeth H., McCavera, Samantha, Berg, Hugo van den , Atia, Jolene, Rand, D. A., Shmygol, Anatoly, Chan, Yi-Wah, Quenby, Siobhan et al.
(2014)
The inwardly rectifying K+ channel KIR7.1 controls uterine excitability throughout pregnancy.
EMBO Molecular Medicine, Volume 6
(Number 9).
pp. 1161-1174.
doi:10.15252/emmm.201403944
ISSN 1757-4676.
Agence nationale de recherches sur le SIDA (France) (ANRS)
Feillet, Céline, Horst, Gijsbertus Theodorus Johannes van der, Lévi, Francis A., Rand, D. A. and Delaunay, Franck (2015) Coupling between the circadian clock and cell cycle oscillators : implication for healthy cells and malignant growth. Frontiers in Neurology, Volume 6 . Article number 96. doi:10.3389/fneur.2015.00096 ISSN 1664-2295.
BBS
Heron, Elizabeth A., Finkenstädt, Bärbel and Rand, D. A. (David A.) (2007) Bayesian inference for dynamic transcriptional regulation; the Hes1 system as a case study. Bioinformatics, Vol.23 (No.19). pp. 2596-2603. doi:10.1093/bioinformatics/btm367 ISSN 1367-4803.
BBSRC David Phillips Research Fellowship
Ashall, Louise, Horton, Caroline A., Nelson, David E., Paszek, Pawel, Harper, Claire V., Sillitoe, Kate, Ryan, Sheila, Spiller, David G., Unitt, John F., Broomhead, D. S. (David S.), Kell, Douglas B., Rand, D. A. (David A.), See, Violaine and White, Michael R. H. (2009) Pulsatile stimulation determines timing and specificity of NF-kappa B-dependent transcription. Science, Vol.324 (No.5924). pp. 242-246. doi:10.1126/science.1164860 ISSN 0036-8075.
BBSRC REI
Turner, David A., Paszek, Pawel, Woodcock, Dan J., Nelson, David E., Horton, Caroline A., Wang, Yunjiao, Spiller, David G., Rand, D. A. (David A.), White, Michael R. H. and Harper, Claire V. (2010) Physiological levels of TNFα stimulation induce stochastic dynamics of NF-kB responses in single living cells. Journal of Cell Science, Vol.123 (No.16). pp. 2834-2843. doi:10.1242/jcs.069641 ISSN 0021-9533.
BioSim
Woodcock, Dan J., Vance, Keith W., Komorowski, Michal, Koentges, Georgy, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number. Bioinformatics, Volume 29 (Number 12). pp. 1519-1525. doi:10.1093/bioinformatics/btt201 ISSN 1367-4803.
BioSim Network of Excellence, European Union
Spiller, David G., Wood, Christopher D., Rand, D. A. (David A.) and White, Michael R. H. (2010) Measurement of single-cell dynamics. Nature, Vol.465 (No.7299). pp. 736-745. ISSN 0028-0836 doi:10.1038/nature09232
Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC)
Minas, Giorgos and Rand, D. A. (David A.) (2017) Long-time analytic approximation of large stochastic oscillators : simulation, analysis and inference. PLoS Computational Biology, 13 (7). e1005676. doi:10.1371/journal.pcbi.1005676 ISSN 1553-7358.
Domijan, Mirela, Brown, Paul E., Shulgin, Boris V. and Rand, D. A. (David A.) (2016) PeTTSy : a computational tool for perturbation analysis of complex systems biology models. BMC Bioinformatics, 17 (124). doi:10.1186/s12859-016-0972-2 ISSN 1471-2105.
Featherstone, Katie, Hey, Kirsty L., Momiji, Hiroshi, McNamara, A. V., Patist, A. L., Woodburn, J., Spiller , D. G., Christian, H. C., McNeilly, A. S., Mullins, J. J. , Finkenstädt, Bärbel, Rand, D. A. (David A.), White, M. R. H. and David, J. R. E. (2016) Spatially coordinated dynamic gene transcription in living pituitary tissue. eLife, 5 . e08494. doi:10.7554/eLife.08494 ISSN 2050-084X.
Xue, Mingzhan, Momiji, Hiroshi, Rabbani, Naila, Barker, Guy C., Bretschneider, Till, Shmygol, Anatoly, Rand, D. A. (David A.) and Thornalley, Paul J. (2015) Frequency modulated translocational oscillations of Nrf2 mediate the antioxidant response element cytoprotective transcriptional response. Antioxidants & Redox Signaling, 23 (7). pp. 613-629. doi:10.1089/ars.2014.5962 ISSN 1523-0864.
Feillet, Céline, Horst, Gijsbertus Theodorus Johannes van der, Lévi, Francis A., Rand, D. A. and Delaunay, Franck (2015) Coupling between the circadian clock and cell cycle oscillators : implication for healthy cells and malignant growth. Frontiers in Neurology, Volume 6 . Article number 96. doi:10.3389/fneur.2015.00096 ISSN 1664-2295.
Domijan, Mirela and Rand, D. A. (David A.) (2015) Using constraints and their value for optimization of large ODE systems. Journal of The Royal Society Interface, Volume 12 (Number 104). Article number 20141303. doi:10.1098/rsif.2014.1303 ISSN 1742-5689.
Sidaway-Lee, Kate, Costa, Maria J. (Maria João), Rand, D. A. (David A.), Finkenstädt, Bärbel and Penfield, Steven (2014) Direct measurement of transcription rates reveals multiple mechanisms for configuration of the Arabidopsis ambient temperature response. Genome Biology, Volume 15 (Number 3). Article number R45. doi:10.1186/gb-2014-15-3-r45 ISSN 1474-7596.
Woodcock, Dan J., Vance, Keith W., Komorowski, Michal, Koentges, Georgy, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number. Bioinformatics, Volume 29 (Number 12). pp. 1519-1525. doi:10.1093/bioinformatics/btt201 ISSN 1367-4803.
Costa, Maria J. (Maria João), Finkenstädt, Bärbel, Gould, Peter D., Foreman, Julia, Halliday, Karen J., Hall, Anthony, Roche, Véronique, Lévi, Francis A. and Rand, D. A. (David A.) (2013) Inference on periodicity of circadian time series. Biostatistics, Volume 14 (Number 4). pp. 792-806. doi:10.1093/biostatistics/kxt020 ISSN 1465-4644.
Gould, Peter D., Ugarte, Nicolas, Domijan, Mirela, Costa, Maria J. (Maria João), Foreman, Julia, MacGregor, Dana, Rose, Ken, Griffiths, Jayne, Millar, A. J. (Andrew J.), Finkenstädt, Bärbel, Penfield, Steven, Rand, D. A. (David A.), Halliday, Karen J. and Hall, Anthony J. W. (2013) Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology, Volume 9 . Article no. 650. doi:10.1038/msb.2013.7 ISSN 1744-4292.
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, D. A. (David A.), Davis, Julian R. E. and White, Michael R. H. (2011) Dynamic analysis of stochastic transcription cycles. PLos Biology, Vol.9 (No.4). doi:10.1371/journal.pbio.1000607 ISSN 1545-7885.
Breeze, Emily, Harrison, Elizabeth, McHattie, Stuart, Hughes, Linda Karen, Hickman, Richard J., Hill, Claire, Kiddle, Steven J., Kim, Youn-sung, Penfold, Christopher A., Jenkins, Dafyd J. et al.
(2011)
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell, The, Vol.23
(No.3).
pp. 873-894.
doi:10.1105/tpc.111.083345
ISSN 1040-4651.
Domijan, Mirela and Rand, D. A. (David A.) (2011) Balance equations can buffer noisy and sustained environmental perturbations of circadian clocks. Interface Focus, Vol.1 (No.1). pp. 177-186. doi:10.1098/rsfs.2010.0007 ISSN 2042-8898.
Komorowski, Michal, Costa, Maria J. (Maria João), Rand, D. A. (David A.) and Stumpf, M. P. H. (Michael P. H.) (2011) Sensitivity, robustness, and identifiability in stochastic chemical kinetics models. Proceedings of the National Academy of Sciences, Volume 108 (Number 21). pp. 8645-8650. doi:10.1073/pnas.1015814108 ISSN 0027-8424.
Edwards, Kieron D., Akman, Ozgur E., Knox, Kirsten, Lumsden, P. J., Thomson, Adrian W., Brown, Paul E., Pokhilko, Alexandra, Kozma-Bognar, Laszlo, Nagy, Ferenc, Rand, D. A. and Millar, A. J. (2010) Quantitative analysis of regulatory flexibility under changing environmental conditions. Molecular Systems Biology, Vol.6 (No.424). doi:10.1038/msb.2010.81 ISSN 1744-4292.
Turner, David A., Paszek, Pawel, Woodcock, Dan J., Nelson, David E., Horton, Caroline A., Wang, Yunjiao, Spiller, David G., Rand, D. A. (David A.), White, Michael R. H. and Harper, Claire V. (2010) Physiological levels of TNFα stimulation induce stochastic dynamics of NF-kB responses in single living cells. Journal of Cell Science, Vol.123 (No.16). pp. 2834-2843. doi:10.1242/jcs.069641 ISSN 0021-9533.
Akman, Ozgur E., Rand, D. A. (David A.), Brown, Paul E. and Millar, A. J. (Andrew J.) (2010) Robustness from flexibility in the fungal circadian clock. BMC Systems Biology, Vol.4 (No.88). doi:10.1186/1752-0509-4-88 ISSN 1752-0509.
Paszek, Pawel, Ryan, Sheila, Ashall, Louise, Sillitoe, Kate, Harper, Claire V., Spiller, David G., Rand, D. A. (David A.) and White, Michael R. H. (2010) Population robustness arising from cellular heterogeneity. Proceedings of the National Academy of Sciences of the United States of America, Vol.107 (No.25). pp. 11644-11649. doi:10.1073/pnas.0913798107 ISSN 0027-8424.
Spiller, David G., Wood, Christopher D., Rand, D. A. (David A.) and White, Michael R. H. (2010) Measurement of single-cell dynamics. Nature, Vol.465 (No.7299). pp. 736-745. ISSN 0028-0836 doi:10.1038/nature09232
Salazar, Jose Domingo, Saithong, Treenut, Brown, Paul E., Foreman, Julia, Locke, James C. W., Halliday, Karen J., Carré, Isabelle A., Rand, D. A. (David A.) and Millar, A. J. (Andrew J.) (2009) Prediction of photoperiodic regulators from quantitative gene circuit models. Cell, Vol.139 (No.6). pp. 1170-1179. doi:10.1016/j.cell.2009.11.029 ISSN 1097-4172.
Komorowski, Michal, Finkenstädt, Bärbel, Harper, Claire V. and Rand, D. A. (David A.) (2009) Bayesian inference of biochemical kinetic parameters using the linear noise approximation. BMC Bioinformatics, Vol.10 (No.343). doi:10.1186/1471-2105-10-343 ISSN 1471-2105.
Smith, Benjamin, Hill, Claire, Godfrey, Emma L., Rand, D. A., Berg, Hugo van den, Thornton, Steven, Hodgkin, Matthew N., Davey, John and Ladds, Graham (2009) Dual positive and negative regulation of GPCR signaling by GTP hydrolysis. Cellular Signalling, Vol.21 (No.7). pp. 1151-1160. doi:10.1016/j.cellsig.2009.03.004 ISSN 0898-6568.
Ashall, Louise, Horton, Caroline A., Nelson, David E., Paszek, Pawel, Harper, Claire V., Sillitoe, Kate, Ryan, Sheila, Spiller, David G., Unitt, John F., Broomhead, D. S. (David S.), Kell, Douglas B., Rand, D. A. (David A.), See, Violaine and White, Michael R. H. (2009) Pulsatile stimulation determines timing and specificity of NF-kappa B-dependent transcription. Science, Vol.324 (No.5924). pp. 242-246. doi:10.1126/science.1164860 ISSN 0036-8075.
Finkenstädt, Bärbel, Heron, Elizabeth A., Komorowski, Michal, Edwards, Kieron, Tang, Sanyi, Harper, Claire V., Davis, Julian R. E., White, Michael R. H., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Reconstruction of transcriptional dynamics from gene reporter data using differential equations. Bioinformatics, Vol.24 (No.24). pp. 2901-2907. doi:10.1093/bioinformatics/btn562 ISSN 1367-4803.
Rand, D. A. (David A.) (2008) Mapping global sensitivity of cellular network dynamics: sensitivity heat maps and a global summation law. Journal of The Royal Society Interface, Vol.5 (Suppl.1). S59-S69. doi:10.1098/rsif.2008.0084.focus ISSN 1742-5689.
Akman, Ozgur E., Locke, James C. W., Tang, Sanyi, Carré, Isabelle A., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Isoform switching facilitates period control in the Neurospora crassa circadian clock. Molecular Systems Biology, Volume 4 . Article No. 164. doi:10.1038/msb.2008.5 ISSN 1744-4292.
Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC)
Jenkins, Dafyd J., Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A temporal switch model for estimating transcriptional activity in gene expression. Bioinformatics, Volume 29 (Number 9). pp. 1158-1165. doi:10.1093/bioinformatics/btt111 ISSN 1367-4803.
British Heart Foundation
Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, D. A. (David A.), Davis, Julian R. E. and White, Michael R. H. (2011) Dynamic analysis of stochastic transcription cycles. PLos Biology, Vol.9 (No.4). doi:10.1371/journal.pbio.1000607 ISSN 1545-7885.
Calouste Gulbenkian Foundation
Pinto, A. A., Rand, D. A. (David A.) and Ferreira, F. (2010) Arc exchange systems and renormalization. Journal of Difference Equations and Applications, Vol.16 (No.4). pp. 347-371. doi:10.1080/10236190802422059 ISSN 1023-6198.
Pinto, A. A. and Rand, D. A. (David A.) (2010) Train tracks with C1+ self-renormalizable structures. Journal of Difference Equations and Applications, Vol.16 (No.8). pp. 945-962. doi:10.1080/10236190802629356 ISSN 1023-6198.
Cancer Research UK (CRUK)
Ballesta, Annabelle, Innominato, Pasquale F., Dallmann, Robert, Rand, D. A. (David A.) and Lévi, Francis A. (2017) Systems chronotherapeutics. Pharmacological Reviews, 69 (2). pp. 161-199. doi:10.1124/pr.116.013441 ISSN 0031-6997.
Centre for Integrative and Systems Biology (CSBE)
Finkenstädt, Bärbel, Heron, Elizabeth A., Komorowski, Michal, Edwards, Kieron, Tang, Sanyi, Harper, Claire V., Davis, Julian R. E., White, Michael R. H., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Reconstruction of transcriptional dynamics from gene reporter data using differential equations. Bioinformatics, Vol.24 (No.24). pp. 2901-2907. doi:10.1093/bioinformatics/btn562 ISSN 1367-4803.
Centros de Matematica da Universidade do Minho e da Universidade do Porto
Pinto, A. A. and Rand, D. A. (David A.) (2010) Train tracks with C1+ self-renormalizable structures. Journal of Difference Equations and Applications, Vol.16 (No.8). pp. 945-962. doi:10.1080/10236190802629356 ISSN 1023-6198.
EPSRC
Heron, Elizabeth A., Finkenstädt, Bärbel and Rand, D. A. (David A.) (2007) Bayesian inference for dynamic transcriptional regulation; the Hes1 system as a case study. Bioinformatics, Vol.23 (No.19). pp. 2596-2603. doi:10.1093/bioinformatics/btm367 ISSN 1367-4803.
Heron, Elizabeth A., Finkenstädt, Bärbel and Rand, D. A. (David A.) (2007) Bayesian inference for dynamic transcriptional regulation; the Hes1 system as a case study. Bioinformatics, Vol.23 (No.19). pp. 2596-2603. doi:10.1093/bioinformatics/btm367 ISSN 1367-4803.
EU
Heron, Elizabeth A., Finkenstädt, Bärbel and Rand, D. A. (David A.) (2007) Bayesian inference for dynamic transcriptional regulation; the Hes1 system as a case study. Bioinformatics, Vol.23 (No.19). pp. 2596-2603. doi:10.1093/bioinformatics/btm367 ISSN 1367-4803.
Engineering and Physical Sciences Research Council (EPSRC)
Domijan, Mirela, Brown, Paul E., Shulgin, Boris V. and Rand, D. A. (David A.) (2016) PeTTSy : a computational tool for perturbation analysis of complex systems biology models. BMC Bioinformatics, 17 (124). doi:10.1186/s12859-016-0972-2 ISSN 1471-2105.
Featherstone, Katie, Hey, Kirsty L., Momiji, Hiroshi, McNamara, A. V., Patist, A. L., Woodburn, J., Spiller , D. G., Christian, H. C., McNeilly, A. S., Mullins, J. J. , Finkenstädt, Bärbel, Rand, D. A. (David A.), White, M. R. H. and David, J. R. E. (2016) Spatially coordinated dynamic gene transcription in living pituitary tissue. eLife, 5 . e08494. doi:10.7554/eLife.08494 ISSN 2050-084X.
Hey, Kirsty L., Momiji, Hiroshi, Featherstone, Karen, Davis, Julian R.E., White, Michael R.H., Rand, D. A. (David A.) and Finkenstädt, Bärbel (2015) A stochastic transcriptional switch model for single cell imaging data. Biostatistics, 16 (4). pp. 655-669. doi:10.1093/biostatistics/kxv010 ISSN 1465-4644.
Xue, Mingzhan, Momiji, Hiroshi, Rabbani, Naila, Barker, Guy C., Bretschneider, Till, Shmygol, Anatoly, Rand, D. A. (David A.) and Thornalley, Paul J. (2015) Frequency modulated translocational oscillations of Nrf2 mediate the antioxidant response element cytoprotective transcriptional response. Antioxidants & Redox Signaling, 23 (7). pp. 613-629. doi:10.1089/ars.2014.5962 ISSN 1523-0864.
Feillet, Céline, Horst, Gijsbertus Theodorus Johannes van der, Lévi, Francis A., Rand, D. A. and Delaunay, Franck (2015) Coupling between the circadian clock and cell cycle oscillators : implication for healthy cells and malignant growth. Frontiers in Neurology, Volume 6 . Article number 96. doi:10.3389/fneur.2015.00096 ISSN 1664-2295.
Domijan, Mirela and Rand, D. A. (David A.) (2015) Using constraints and their value for optimization of large ODE systems. Journal of The Royal Society Interface, Volume 12 (Number 104). Article number 20141303. doi:10.1098/rsif.2014.1303 ISSN 1742-5689.
Woodcock, Dan J., Vance, Keith W., Komorowski, Michal, Koentges, Georgy, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number. Bioinformatics, Volume 29 (Number 12). pp. 1519-1525. doi:10.1093/bioinformatics/btt201 ISSN 1367-4803.
Costa, Maria J. (Maria João), Finkenstädt, Bärbel, Gould, Peter D., Foreman, Julia, Halliday, Karen J., Hall, Anthony, Roche, Véronique, Lévi, Francis A. and Rand, D. A. (David A.) (2013) Inference on periodicity of circadian time series. Biostatistics, Volume 14 (Number 4). pp. 792-806. doi:10.1093/biostatistics/kxt020 ISSN 1465-4644.
Jenkins, Dafyd J., Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A temporal switch model for estimating transcriptional activity in gene expression. Bioinformatics, Volume 29 (Number 9). pp. 1158-1165. doi:10.1093/bioinformatics/btt111 ISSN 1367-4803.
Gould, Peter D., Ugarte, Nicolas, Domijan, Mirela, Costa, Maria J. (Maria João), Foreman, Julia, MacGregor, Dana, Rose, Ken, Griffiths, Jayne, Millar, A. J. (Andrew J.), Finkenstädt, Bärbel, Penfield, Steven, Rand, D. A. (David A.), Halliday, Karen J. and Hall, Anthony J. W. (2013) Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology, Volume 9 . Article no. 650. doi:10.1038/msb.2013.7 ISSN 1744-4292.
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, D. A. (David A.), Davis, Julian R. E. and White, Michael R. H. (2011) Dynamic analysis of stochastic transcription cycles. PLos Biology, Vol.9 (No.4). doi:10.1371/journal.pbio.1000607 ISSN 1545-7885.
Breeze, Emily, Harrison, Elizabeth, McHattie, Stuart, Hughes, Linda Karen, Hickman, Richard J., Hill, Claire, Kiddle, Steven J., Kim, Youn-sung, Penfold, Christopher A., Jenkins, Dafyd J. et al.
(2011)
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell, The, Vol.23
(No.3).
pp. 873-894.
doi:10.1105/tpc.111.083345
ISSN 1040-4651.
Domijan, Mirela and Rand, D. A. (David A.) (2011) Balance equations can buffer noisy and sustained environmental perturbations of circadian clocks. Interface Focus, Vol.1 (No.1). pp. 177-186. doi:10.1098/rsfs.2010.0007 ISSN 2042-8898.
Komorowski, Michal, Costa, Maria J. (Maria João), Rand, D. A. (David A.) and Stumpf, M. P. H. (Michael P. H.) (2011) Sensitivity, robustness, and identifiability in stochastic chemical kinetics models. Proceedings of the National Academy of Sciences, Volume 108 (Number 21). pp. 8645-8650. doi:10.1073/pnas.1015814108 ISSN 0027-8424.
Edwards, Kieron D., Akman, Ozgur E., Knox, Kirsten, Lumsden, P. J., Thomson, Adrian W., Brown, Paul E., Pokhilko, Alexandra, Kozma-Bognar, Laszlo, Nagy, Ferenc, Rand, D. A. and Millar, A. J. (2010) Quantitative analysis of regulatory flexibility under changing environmental conditions. Molecular Systems Biology, Vol.6 (No.424). doi:10.1038/msb.2010.81 ISSN 1744-4292.
Turner, David A., Paszek, Pawel, Woodcock, Dan J., Nelson, David E., Horton, Caroline A., Wang, Yunjiao, Spiller, David G., Rand, D. A. (David A.), White, Michael R. H. and Harper, Claire V. (2010) Physiological levels of TNFα stimulation induce stochastic dynamics of NF-kB responses in single living cells. Journal of Cell Science, Vol.123 (No.16). pp. 2834-2843. doi:10.1242/jcs.069641 ISSN 0021-9533.
Akman, Ozgur E., Rand, D. A. (David A.), Brown, Paul E. and Millar, A. J. (Andrew J.) (2010) Robustness from flexibility in the fungal circadian clock. BMC Systems Biology, Vol.4 (No.88). doi:10.1186/1752-0509-4-88 ISSN 1752-0509.
Paszek, Pawel, Ryan, Sheila, Ashall, Louise, Sillitoe, Kate, Harper, Claire V., Spiller, David G., Rand, D. A. (David A.) and White, Michael R. H. (2010) Population robustness arising from cellular heterogeneity. Proceedings of the National Academy of Sciences of the United States of America, Vol.107 (No.25). pp. 11644-11649. doi:10.1073/pnas.0913798107 ISSN 0027-8424.
Komorowski, Michal, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2010) Using a single fluorescent reporter gene to infer half-life of extrinsic noise and other parameters of gene expression. Biophysical Journal, Vol.98 (No.12). pp. 2759-2769. doi:10.1016/j.bpj.2010.03.032 ISSN 0006-3495.
Spiller, David G., Wood, Christopher D., Rand, D. A. (David A.) and White, Michael R. H. (2010) Measurement of single-cell dynamics. Nature, Vol.465 (No.7299). pp. 736-745. ISSN 0028-0836 doi:10.1038/nature09232
Pinto, A. A., Rand, D. A. (David A.) and Ferreira, F. (2010) Arc exchange systems and renormalization. Journal of Difference Equations and Applications, Vol.16 (No.4). pp. 347-371. doi:10.1080/10236190802422059 ISSN 1023-6198.
Pinto, A. A. and Rand, D. A. (David A.) (2010) Train tracks with C1+ self-renormalizable structures. Journal of Difference Equations and Applications, Vol.16 (No.8). pp. 945-962. doi:10.1080/10236190802629356 ISSN 1023-6198.
Salazar, Jose Domingo, Saithong, Treenut, Brown, Paul E., Foreman, Julia, Locke, James C. W., Halliday, Karen J., Carré, Isabelle A., Rand, D. A. (David A.) and Millar, A. J. (Andrew J.) (2009) Prediction of photoperiodic regulators from quantitative gene circuit models. Cell, Vol.139 (No.6). pp. 1170-1179. doi:10.1016/j.cell.2009.11.029 ISSN 1097-4172.
Komorowski, Michal, Finkenstädt, Bärbel, Harper, Claire V. and Rand, D. A. (David A.) (2009) Bayesian inference of biochemical kinetic parameters using the linear noise approximation. BMC Bioinformatics, Vol.10 (No.343). doi:10.1186/1471-2105-10-343 ISSN 1471-2105.
Smith, Benjamin, Hill, Claire, Godfrey, Emma L., Rand, D. A., Berg, Hugo van den, Thornton, Steven, Hodgkin, Matthew N., Davey, John and Ladds, Graham (2009) Dual positive and negative regulation of GPCR signaling by GTP hydrolysis. Cellular Signalling, Vol.21 (No.7). pp. 1151-1160. doi:10.1016/j.cellsig.2009.03.004 ISSN 0898-6568.
Ashall, Louise, Horton, Caroline A., Nelson, David E., Paszek, Pawel, Harper, Claire V., Sillitoe, Kate, Ryan, Sheila, Spiller, David G., Unitt, John F., Broomhead, D. S. (David S.), Kell, Douglas B., Rand, D. A. (David A.), See, Violaine and White, Michael R. H. (2009) Pulsatile stimulation determines timing and specificity of NF-kappa B-dependent transcription. Science, Vol.324 (No.5924). pp. 242-246. doi:10.1126/science.1164860 ISSN 0036-8075.
Finkenstädt, Bärbel, Heron, Elizabeth A., Komorowski, Michal, Edwards, Kieron, Tang, Sanyi, Harper, Claire V., Davis, Julian R. E., White, Michael R. H., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Reconstruction of transcriptional dynamics from gene reporter data using differential equations. Bioinformatics, Vol.24 (No.24). pp. 2901-2907. doi:10.1093/bioinformatics/btn562 ISSN 1367-4803.
Rand, D. A. (David A.) (2008) Mapping global sensitivity of cellular network dynamics: sensitivity heat maps and a global summation law. Journal of The Royal Society Interface, Vol.5 (Suppl.1). S59-S69. doi:10.1098/rsif.2008.0084.focus ISSN 1742-5689.
Akman, Ozgur E., Locke, James C. W., Tang, Sanyi, Carré, Isabelle A., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Isoform switching facilitates period control in the Neurospora crassa circadian clock. Molecular Systems Biology, Volume 4 . Article No. 164. doi:10.1038/msb.2008.5 ISSN 1744-4292.
European Commission (EC)
Nieselt, Kay, Battke, Florian, Herbig, Alexander, Bruheim, Per, Wentzel, Alexander, Jakobsen, Øyvind M., Sletta, Håvard, Alam, Mohammad T., Merlo, Maria E., Moore, Jonathan D. et al.
(2010)
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.
BMC Genomics, Vol.11
(Article 10).
doi:10.1186/1471-2164-11-10
ISSN 1471-2164.
European Research Area Network (ERA-NET)
Nieselt, Kay, Battke, Florian, Herbig, Alexander, Bruheim, Per, Wentzel, Alexander, Jakobsen, Øyvind M, Sletta, Håvard, Alam, Mohammad Tauqee, Merlo, Maria E., Moore, Jonathan et al.
(2010)
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.
BMC Genomics, 11
.
p. 10.
doi:DOI: 10.1186/1471-2164-11-10
ISSN 1471-2164.
European Science Foundation (ESF)
Pinto, Alberto A. and Rand, D. A. (David A.) (2011) Uniformly hyperbolic diffeomorphisms in every surfaces. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1031-1047. doi:10.1080/10236190902964265 ISSN 1023-6198.
Pinto, A. A. and Rand, D. A. (David A.) (2005) Rigidity of hyperbolic sets on surfaces. Journal of the London Mathematical Society, Vol.71 (No.2). pp. 481-502. doi:10.1112/S0024610704006052 ISSN 0024-6107.
Pinto, A. A. and Rand, D. A. (David A.) (2001) Existence uniqueness and ratio decomposition for Gibbs states via duality. Ergodic Theory and Dynamical Systems, Vol.21 (No.2). pp. 533-543. doi:10.1017/S0143385701001262 ISSN 0143-3857.
European Union
Paszek, Pawel, Ryan, Sheila, Ashall, Louise, Sillitoe, Kate, Harper, Claire V., Spiller, David G., Rand, D. A. (David A.) and White, Michael R. H. (2010) Population robustness arising from cellular heterogeneity. Proceedings of the National Academy of Sciences of the United States of America, Vol.107 (No.25). pp. 11644-11649. doi:10.1073/pnas.0913798107 ISSN 0027-8424.
Ashall, Louise, Horton, Caroline A., Nelson, David E., Paszek, Pawel, Harper, Claire V., Sillitoe, Kate, Ryan, Sheila, Spiller, David G., Unitt, John F., Broomhead, D. S. (David S.), Kell, Douglas B., Rand, D. A. (David A.), See, Violaine and White, Michael R. H. (2009) Pulsatile stimulation determines timing and specificity of NF-kappa B-dependent transcription. Science, Vol.324 (No.5924). pp. 242-246. doi:10.1126/science.1164860 ISSN 0036-8075.
European Union (EU)
Costa, Maria J. (Maria João), Finkenstädt, Bärbel, Gould, Peter D., Foreman, Julia, Halliday, Karen J., Hall, Anthony, Roche, Véronique, Lévi, Francis A. and Rand, D. A. (David A.) (2013) Inference on periodicity of circadian time series. Biostatistics, Volume 14 (Number 4). pp. 792-806. doi:10.1093/biostatistics/kxt020 ISSN 1465-4644.
Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, D. A. (David A.), Davis, Julian R. E. and White, Michael R. H. (2011) Dynamic analysis of stochastic transcription cycles. PLos Biology, Vol.9 (No.4). doi:10.1371/journal.pbio.1000607 ISSN 1545-7885.
Domijan, Mirela and Rand, D. A. (David A.) (2011) Balance equations can buffer noisy and sustained environmental perturbations of circadian clocks. Interface Focus, Vol.1 (No.1). pp. 177-186. doi:10.1098/rsfs.2010.0007 ISSN 2042-8898.
Komorowski, Michal, Costa, Maria J. (Maria João), Rand, D. A. (David A.) and Stumpf, M. P. H. (Michael P. H.) (2011) Sensitivity, robustness, and identifiability in stochastic chemical kinetics models. Proceedings of the National Academy of Sciences, Volume 108 (Number 21). pp. 8645-8650. doi:10.1073/pnas.1015814108 ISSN 0027-8424.
Akman, Ozgur E., Rand, D. A. (David A.), Brown, Paul E. and Millar, A. J. (Andrew J.) (2010) Robustness from flexibility in the fungal circadian clock. BMC Systems Biology, Vol.4 (No.88). doi:10.1186/1752-0509-4-88 ISSN 1752-0509.
Salazar, Jose Domingo, Saithong, Treenut, Brown, Paul E., Foreman, Julia, Locke, James C. W., Halliday, Karen J., Carré, Isabelle A., Rand, D. A. (David A.) and Millar, A. J. (Andrew J.) (2009) Prediction of photoperiodic regulators from quantitative gene circuit models. Cell, Vol.139 (No.6). pp. 1170-1179. doi:10.1016/j.cell.2009.11.029 ISSN 1097-4172.
Komorowski, Michal, Finkenstädt, Bärbel, Harper, Claire V. and Rand, D. A. (David A.) (2009) Bayesian inference of biochemical kinetic parameters using the linear noise approximation. BMC Bioinformatics, Vol.10 (No.343). doi:10.1186/1471-2105-10-343 ISSN 1471-2105.
Finkenstädt, Bärbel, Heron, Elizabeth A., Komorowski, Michal, Edwards, Kieron, Tang, Sanyi, Harper, Claire V., Davis, Julian R. E., White, Michael R. H., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Reconstruction of transcriptional dynamics from gene reporter data using differential equations. Bioinformatics, Vol.24 (No.24). pp. 2901-2907. doi:10.1093/bioinformatics/btn562 ISSN 1367-4803.
Rand, D. A. (David A.) (2008) Mapping global sensitivity of cellular network dynamics: sensitivity heat maps and a global summation law. Journal of The Royal Society Interface, Vol.5 (Suppl.1). S59-S69. doi:10.1098/rsif.2008.0084.focus ISSN 1742-5689.
Akman, Ozgur E., Locke, James C. W., Tang, Sanyi, Carré, Isabelle A., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Isoform switching facilitates period control in the Neurospora crassa circadian clock. Molecular Systems Biology, Volume 4 . Article No. 164. doi:10.1038/msb.2008.5 ISSN 1744-4292.
Pinto, A. A. and Rand, D. A. (David A.) (2001) Existence uniqueness and ratio decomposition for Gibbs states via duality. Ergodic Theory and Dynamical Systems, Vol.21 (No.2). pp. 533-543. doi:10.1017/S0143385701001262 ISSN 0143-3857.
European Union BIOSIM Network
Turner, David A., Paszek, Pawel, Woodcock, Dan J., Nelson, David E., Horton, Caroline A., Wang, Yunjiao, Spiller, David G., Rand, D. A. (David A.), White, Michael R. H. and Harper, Claire V. (2010) Physiological levels of TNFα stimulation induce stochastic dynamics of NF-kB responses in single living cells. Journal of Cell Science, Vol.123 (No.16). pp. 2834-2843. doi:10.1242/jcs.069641 ISSN 0021-9533.
European Union Biomedical Simulations and Imaging Laboratory Network
Komorowski, Michal, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2010) Using a single fluorescent reporter gene to infer half-life of extrinsic noise and other parameters of gene expression. Biophysical Journal, Vol.98 (No.12). pp. 2759-2769. doi:10.1016/j.bpj.2010.03.032 ISSN 0006-3495.
FCT
Pinto, A. A., Rand, D. A. (David A.) and Ferreira, F. (2010) Arc exchange systems and renormalization. Journal of Difference Equations and Applications, Vol.16 (No.4). pp. 347-371. doi:10.1080/10236190802422059 ISSN 1023-6198.
Pinto, A. A. and Rand, D. A. (David A.) (2010) Train tracks with C1+ self-renormalizable structures. Journal of Difference Equations and Applications, Vol.16 (No.8). pp. 945-962. doi:10.1080/10236190802629356 ISSN 1023-6198.
Foundation for Polish Science [Fundacja na rzecz Nauki Polskiej] (FNP)
Woodcock, Dan J., Vance, Keith W., Komorowski, Michal, Koentges, Georgy, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number. Bioinformatics, Volume 29 (Number 12). pp. 1519-1525. doi:10.1093/bioinformatics/btt201 ISSN 1367-4803.
Fundação Calouste Gulbenkian (FCG)
Pinto, Alberto A. and Rand, D. A. (David A.) (2011) Uniformly hyperbolic diffeomorphisms in every surfaces. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1031-1047. doi:10.1080/10236190902964265 ISSN 1023-6198.
Pinto, A. A. and Rand, D. A. (David A.) (2005) Rigidity of hyperbolic sets on surfaces. Journal of the London Mathematical Society, Vol.71 (No.2). pp. 481-502. doi:10.1112/S0024610704006052 ISSN 0024-6107.
Pinto, A. A. and Rand, D. A. (David A.) (2001) Existence uniqueness and ratio decomposition for Gibbs states via duality. Ergodic Theory and Dynamical Systems, Vol.21 (No.2). pp. 533-543. doi:10.1017/S0143385701001262 ISSN 0143-3857.
Fundação para a Ciência e a Tecnologia (FCT)
Pinto, Alberto A. and Rand, D. A. (David A.) (2011) Uniformly hyperbolic diffeomorphisms in every surfaces. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1031-1047. doi:10.1080/10236190902964265 ISSN 1023-6198.
Pinto, A. A. and Rand, D. A. (David A.) (2005) Rigidity of hyperbolic sets on surfaces. Journal of the London Mathematical Society, Vol.71 (No.2). pp. 481-502. doi:10.1112/S0024610704006052 ISSN 0024-6107.
Pinto, A. A. and Rand, D. A. (David A.) (2001) Existence uniqueness and ratio decomposition for Gibbs states via duality. Ergodic Theory and Dynamical Systems, Vol.21 (No.2). pp. 533-543. doi:10.1017/S0143385701001262 ISSN 0143-3857.
Gatsby Charitable Foundation (GCF)
Salazar, Jose Domingo, Saithong, Treenut, Brown, Paul E., Foreman, Julia, Locke, James C. W., Halliday, Karen J., Carré, Isabelle A., Rand, D. A. (David A.) and Millar, A. J. (Andrew J.) (2009) Prediction of photoperiodic regulators from quantitative gene circuit models. Cell, Vol.139 (No.6). pp. 1170-1179. doi:10.1016/j.cell.2009.11.029 ISSN 1097-4172.
Human Frontiers Science Program (HFSP)
Woodcock, Dan J., Vance, Keith W., Komorowski, Michal, Koentges, Georgy, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number. Bioinformatics, Volume 29 (Number 12). pp. 1519-1525. doi:10.1093/bioinformatics/btt201 ISSN 1367-4803.
Instituto Politécnico do Porto (IPP)
Pinto, Alberto A. and Rand, D. A. (David A.) (2011) Uniformly hyperbolic diffeomorphisms in every surfaces. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1031-1047. doi:10.1080/10236190902964265 ISSN 1023-6198.
Instituto de Engenharia de Sistemas e Computadores do Porto (INESC)
Pinto, Alberto A. and Rand, D. A. (David A.) (2011) Uniformly hyperbolic diffeomorphisms in every surfaces. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1031-1047. doi:10.1080/10236190902964265 ISSN 1023-6198.
L'Oréal (Firm)
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
Manchester Academic Health Sciences Centre (MAHSC)
Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, D. A. (David A.), Davis, Julian R. E. and White, Michael R. H. (2011) Dynamic analysis of stochastic transcription cycles. PLos Biology, Vol.9 (No.4). doi:10.1371/journal.pbio.1000607 ISSN 1545-7885.
March of Dimes Birth Defects Foundation
McCloskey, Conor, Rada, Cara, Bailey, Elizabeth H., McCavera, Samantha, Berg, Hugo van den , Atia, Jolene, Rand, D. A., Shmygol, Anatoly, Chan, Yi-Wah, Quenby, Siobhan et al.
(2014)
The inwardly rectifying K+ channel KIR7.1 controls uterine excitability throughout pregnancy.
EMBO Molecular Medicine, Volume 6
(Number 9).
pp. 1161-1174.
doi:10.15252/emmm.201403944
ISSN 1757-4676.
Medical Research Council (Canada) (MRC)
Featherstone, Katie, Hey, Kirsty L., Momiji, Hiroshi, McNamara, A. V., Patist, A. L., Woodburn, J., Spiller , D. G., Christian, H. C., McNeilly, A. S., Mullins, J. J. , Finkenstädt, Bärbel, Rand, D. A. (David A.), White, M. R. H. and David, J. R. E. (2016) Spatially coordinated dynamic gene transcription in living pituitary tissue. eLife, 5 . e08494. doi:10.7554/eLife.08494 ISSN 2050-084X.
Medical Research Council (Great Britain) (MRC)
Atia, Jolene, McCloskey, Conor, Shmygol, Anatoly, Rand, D. A. (David A.), Berg, Hugo van den and Blanks, Andrew M. (2016) Reconstruction of cell surface densities of ion pumps, exchangers, and channels from mRNA expression, conductance kinetics, whole-cell calcium, and current-clamp voltage recordings, with an application to human uterine smooth muscle cells. PLoS Computational Biology, 12 (4). e1004828. doi:10.1371/journal.pcbi.1004828 ISSN 1553-7358.
McCloskey, Conor, Rada, Cara, Bailey, Elizabeth H., McCavera, Samantha, Berg, Hugo van den , Atia, Jolene, Rand, D. A., Shmygol, Anatoly, Chan, Yi-Wah, Quenby, Siobhan et al.
(2014)
The inwardly rectifying K+ channel KIR7.1 controls uterine excitability throughout pregnancy.
EMBO Molecular Medicine, Volume 6
(Number 9).
pp. 1161-1174.
doi:10.15252/emmm.201403944
ISSN 1757-4676.
Paszek, Pawel, Ryan, Sheila, Ashall, Louise, Sillitoe, Kate, Harper, Claire V., Spiller, David G., Rand, D. A. (David A.) and White, Michael R. H. (2010) Population robustness arising from cellular heterogeneity. Proceedings of the National Academy of Sciences of the United States of America, Vol.107 (No.25). pp. 11644-11649. doi:10.1073/pnas.0913798107 ISSN 0027-8424.
Spiller, David G., Wood, Christopher D., Rand, D. A. (David A.) and White, Michael R. H. (2010) Measurement of single-cell dynamics. Nature, Vol.465 (No.7299). pp. 736-745. ISSN 0028-0836 doi:10.1038/nature09232
Ashall, Louise, Horton, Caroline A., Nelson, David E., Paszek, Pawel, Harper, Claire V., Sillitoe, Kate, Ryan, Sheila, Spiller, David G., Unitt, John F., Broomhead, D. S. (David S.), Kell, Douglas B., Rand, D. A. (David A.), See, Violaine and White, Michael R. H. (2009) Pulsatile stimulation determines timing and specificity of NF-kappa B-dependent transcription. Science, Vol.324 (No.5924). pp. 242-246. doi:10.1126/science.1164860 ISSN 0036-8075.
Medical Research Council (MRC)
Turner, David A., Paszek, Pawel, Woodcock, Dan J., Nelson, David E., Horton, Caroline A., Wang, Yunjiao, Spiller, David G., Rand, D. A. (David A.), White, Michael R. H. and Harper, Claire V. (2010) Physiological levels of TNFα stimulation induce stochastic dynamics of NF-kB responses in single living cells. Journal of Cell Science, Vol.123 (No.16). pp. 2834-2843. doi:10.1242/jcs.069641 ISSN 0021-9533.
Ministerio da Ciencia e da Tecnologia
Pinto, A. A. and Rand, D. A. (David A.) (2010) Train tracks with C1+ self-renormalizable structures. Journal of Difference Equations and Applications, Vol.16 (No.8). pp. 945-962. doi:10.1080/10236190802629356 ISSN 1023-6198.
Ministerio da Ciencia e da Tecnologia and Centros de Matematica da Universidade do Minho e da Universidade do Porto
Pinto, A. A., Rand, D. A. (David A.) and Ferreira, F. (2010) Arc exchange systems and renormalization. Journal of Difference Equations and Applications, Vol.16 (No.4). pp. 347-371. doi:10.1080/10236190802422059 ISSN 1023-6198.
National Institute for Health Research (Great Britain) (NIHR)
Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, D. A. (David A.), Davis, Julian R. E. and White, Michael R. H. (2011) Dynamic analysis of stochastic transcription cycles. PLos Biology, Vol.9 (No.4). doi:10.1371/journal.pbio.1000607 ISSN 1545-7885.
National Institutes of Health (U.S.) (NIH)
McCloskey, Conor, Rada, Cara, Bailey, Elizabeth H., McCavera, Samantha, Berg, Hugo van den , Atia, Jolene, Rand, D. A., Shmygol, Anatoly, Chan, Yi-Wah, Quenby, Siobhan et al.
(2014)
The inwardly rectifying K+ channel KIR7.1 controls uterine excitability throughout pregnancy.
EMBO Molecular Medicine, Volume 6
(Number 9).
pp. 1161-1174.
doi:10.15252/emmm.201403944
ISSN 1757-4676.
National Science Foundation (U.S.) (NSF)
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
Norges forskningsråd [Norwegian Research Council]
Nieselt, Kay, Battke, Florian, Herbig, Alexander, Bruheim, Per, Wentzel, Alexander, Jakobsen, Øyvind M., Sletta, Håvard, Alam, Mohammad T., Merlo, Maria E., Moore, Jonathan D. et al.
(2010)
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.
BMC Genomics, Vol.11
(Article 10).
doi:10.1186/1471-2164-11-10
ISSN 1471-2164.
Norges forskningsråd [Research Council of Norway] (NF)
Nieselt, Kay, Battke, Florian, Herbig, Alexander, Bruheim, Per, Wentzel, Alexander, Jakobsen, Øyvind M, Sletta, Håvard, Alam, Mohammad Tauqee, Merlo, Maria E., Moore, Jonathan et al.
(2010)
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.
BMC Genomics, 11
.
p. 10.
doi:DOI: 10.1186/1471-2164-11-10
ISSN 1471-2164.
PAPIIT (Programa de Apoyo a Proyectos de Investigacion e Innovacion Tecnologica, Mexico)
Spiller, David G., Wood, Christopher D., Rand, D. A. (David A.) and White, Michael R. H. (2010) Measurement of single-cell dynamics. Nature, Vol.465 (No.7299). pp. 736-745. ISSN 0028-0836 doi:10.1038/nature09232
POCTI
Pinto, A. A., Rand, D. A. (David A.) and Ferreira, F. (2010) Arc exchange systems and renormalization. Journal of Difference Equations and Applications, Vol.16 (No.4). pp. 347-371. doi:10.1080/10236190802422059 ISSN 1023-6198.
PRAXIS (Organization)
Pinto, A. A. and Rand, D. A. (David A.) (2001) Existence uniqueness and ratio decomposition for Gibbs states via duality. Ergodic Theory and Dynamical Systems, Vol.21 (No.2). pp. 533-543. doi:10.1017/S0143385701001262 ISSN 0143-3857.
PRODYN-ESF
Pinto, A. A., Rand, D. A. (David A.) and Ferreira, F. (2010) Arc exchange systems and renormalization. Journal of Difference Equations and Applications, Vol.16 (No.4). pp. 347-371. doi:10.1080/10236190802422059 ISSN 1023-6198.
Pinto, A. A. and Rand, D. A. (David A.) (2010) Train tracks with C1+ self-renormalizable structures. Journal of Difference Equations and Applications, Vol.16 (No.8). pp. 945-962. doi:10.1080/10236190802629356 ISSN 1023-6198.
Portugal. Ministério da Ciência e da Tecnologia (MCT)
Pinto, Alberto A. and Rand, D. A. (David A.) (2011) Uniformly hyperbolic diffeomorphisms in every surfaces. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1031-1047. doi:10.1080/10236190902964265 ISSN 1023-6198.
Prof. John Glover Memorial Postdoctoral Fellowship
Komorowski, Michal, Finkenstädt, Bärbel, Harper, Claire V. and Rand, D. A. (David A.) (2009) Bayesian inference of biochemical kinetic parameters using the linear noise approximation. BMC Bioinformatics, Vol.10 (No.343). doi:10.1186/1471-2105-10-343 ISSN 1471-2105.
Professor John Glover Memorial Postdoctoral Fellowship
Turner, David A., Paszek, Pawel, Woodcock, Dan J., Nelson, David E., Horton, Caroline A., Wang, Yunjiao, Spiller, David G., Rand, D. A. (David A.), White, Michael R. H. and Harper, Claire V. (2010) Physiological levels of TNFα stimulation induce stochastic dynamics of NF-kB responses in single living cells. Journal of Cell Science, Vol.123 (No.16). pp. 2834-2843. doi:10.1242/jcs.069641 ISSN 0021-9533.
Professor John Glover Memorial Research Fellowship
Ashall, Louise, Horton, Caroline A., Nelson, David E., Paszek, Pawel, Harper, Claire V., Sillitoe, Kate, Ryan, Sheila, Spiller, David G., Unitt, John F., Broomhead, D. S. (David S.), Kell, Douglas B., Rand, D. A. (David A.), See, Violaine and White, Michael R. H. (2009) Pulsatile stimulation determines timing and specificity of NF-kappa B-dependent transcription. Science, Vol.324 (No.5924). pp. 242-246. doi:10.1126/science.1164860 ISSN 0036-8075.
Royal Society (Great Britain)
Komorowski, Michal, Costa, Maria J. (Maria João), Rand, D. A. (David A.) and Stumpf, M. P. H. (Michael P. H.) (2011) Sensitivity, robustness, and identifiability in stochastic chemical kinetics models. Proceedings of the National Academy of Sciences, Volume 108 (Number 21). pp. 8645-8650. doi:10.1073/pnas.1015814108 ISSN 0027-8424.
Ashall, Louise, Horton, Caroline A., Nelson, David E., Paszek, Pawel, Harper, Claire V., Sillitoe, Kate, Ryan, Sheila, Spiller, David G., Unitt, John F., Broomhead, D. S. (David S.), Kell, Douglas B., Rand, D. A. (David A.), See, Violaine and White, Michael R. H. (2009) Pulsatile stimulation determines timing and specificity of NF-kappa B-dependent transcription. Science, Vol.324 (No.5924). pp. 242-246. doi:10.1126/science.1164860 ISSN 0036-8075.
Royal Society/Wolfson Merit Award
Ashall, Louise, Horton, Caroline A., Nelson, David E., Paszek, Pawel, Harper, Claire V., Sillitoe, Kate, Ryan, Sheila, Spiller, David G., Unitt, John F., Broomhead, D. S. (David S.), Kell, Douglas B., Rand, D. A. (David A.), See, Violaine and White, Michael R. H. (2009) Pulsatile stimulation determines timing and specificity of NF-kappa B-dependent transcription. Science, Vol.324 (No.5924). pp. 242-246. doi:10.1126/science.1164860 ISSN 0036-8075.
SERC
Rand, D. A. (David A.) (1988) Global phase space universality, smooth conjugacies and renormalisation: I. The C1+alpha case. NONLINEARITY, 1 (1). pp. 181-202. doi:10.1088/0951-7715/1/1/007 ISSN 0951-7715.
Science and Engineering Research Council (Great Britain) (SERC)
Pinto, A. A. and Rand, D. A. (David A.) (2005) Rigidity of hyperbolic sets on surfaces. Journal of the London Mathematical Society, Vol.71 (No.2). pp. 481-502. doi:10.1112/S0024610704006052 ISSN 0024-6107.
Pinto, A. A. and Rand, D. A. (David A.) (2001) Existence uniqueness and ratio decomposition for Gibbs states via duality. Ergodic Theory and Dynamical Systems, Vol.21 (No.2). pp. 533-543. doi:10.1017/S0143385701001262 ISSN 0143-3857.
Seventh Framework Programme (European Commission) (FP7)
Minas, Giorgos and Rand, D. A. (David A.) (2017) Long-time analytic approximation of large stochastic oscillators : simulation, analysis and inference. PLoS Computational Biology, 13 (7). e1005676. doi:10.1371/journal.pcbi.1005676 ISSN 1553-7358.
Ballesta, Annabelle, Innominato, Pasquale F., Dallmann, Robert, Rand, D. A. (David A.) and Lévi, Francis A. (2017) Systems chronotherapeutics. Pharmacological Reviews, 69 (2). pp. 161-199. doi:10.1124/pr.116.013441 ISSN 0031-6997.
Domijan, Mirela, Brown, Paul E., Shulgin, Boris V. and Rand, D. A. (David A.) (2016) PeTTSy : a computational tool for perturbation analysis of complex systems biology models. BMC Bioinformatics, 17 (124). doi:10.1186/s12859-016-0972-2 ISSN 1471-2105.
Xue, Mingzhan, Momiji, Hiroshi, Rabbani, Naila, Barker, Guy C., Bretschneider, Till, Shmygol, Anatoly, Rand, D. A. (David A.) and Thornalley, Paul J. (2015) Frequency modulated translocational oscillations of Nrf2 mediate the antioxidant response element cytoprotective transcriptional response. Antioxidants & Redox Signaling, 23 (7). pp. 613-629. doi:10.1089/ars.2014.5962 ISSN 1523-0864.
Sixth Framework Programme (European Commission) (FP6)
Edwards, Kieron D., Akman, Ozgur E., Knox, Kirsten, Lumsden, P. J., Thomson, Adrian W., Brown, Paul E., Pokhilko, Alexandra, Kozma-Bognar, Laszlo, Nagy, Ferenc, Rand, D. A. and Millar, A. J. (2010) Quantitative analysis of regulatory flexibility under changing environmental conditions. Molecular Systems Biology, Vol.6 (No.424). doi:10.1038/msb.2010.81 ISSN 1744-4292.
Thailand
Salazar, Jose Domingo, Saithong, Treenut, Brown, Paul E., Foreman, Julia, Locke, James C. W., Halliday, Karen J., Carré, Isabelle A., Rand, D. A. (David A.) and Millar, A. J. (Andrew J.) (2009) Prediction of photoperiodic regulators from quantitative gene circuit models. Cell, Vol.139 (No.6). pp. 1170-1179. doi:10.1016/j.cell.2009.11.029 ISSN 1097-4172.
The Prof. John Glover Memorial Postdoctoral Fellowship
Finkenstädt, Bärbel, Heron, Elizabeth A., Komorowski, Michal, Edwards, Kieron, Tang, Sanyi, Harper, Claire V., Davis, Julian R. E., White, Michael R. H., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Reconstruction of transcriptional dynamics from gene reporter data using differential equations. Bioinformatics, Vol.24 (No.24). pp. 2901-2907. doi:10.1093/bioinformatics/btn562 ISSN 1367-4803.
Unesco
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
Universidade do Minho (UdM)
Pinto, Alberto A. and Rand, D. A. (David A.) (2011) Uniformly hyperbolic diffeomorphisms in every surfaces. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1031-1047. doi:10.1080/10236190902964265 ISSN 1023-6198.
Universidade do Porto (UP)
Pinto, Alberto A. and Rand, D. A. (David A.) (2011) Uniformly hyperbolic diffeomorphisms in every surfaces. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1031-1047. doi:10.1080/10236190902964265 ISSN 1023-6198.
Universidade do Porto. Centro de Matemática Aplicada (CMA)
Pinto, A. A. and Rand, D. A. (David A.) (2001) Existence uniqueness and ratio decomposition for Gibbs states via duality. Ergodic Theory and Dynamical Systems, Vol.21 (No.2). pp. 533-543. doi:10.1017/S0143385701001262 ISSN 0143-3857.
University Hospitals Coventry and Warwickshire NHS Trust
McCloskey, Conor, Rada, Cara, Bailey, Elizabeth H., McCavera, Samantha, Berg, Hugo van den , Atia, Jolene, Rand, D. A., Shmygol, Anatoly, Chan, Yi-Wah, Quenby, Siobhan et al.
(2014)
The inwardly rectifying K+ channel KIR7.1 controls uterine excitability throughout pregnancy.
EMBO Molecular Medicine, Volume 6
(Number 9).
pp. 1161-1174.
doi:10.15252/emmm.201403944
ISSN 1757-4676.
Smith, Benjamin, Hill, Claire, Godfrey, Emma L., Rand, D. A., Berg, Hugo van den, Thornton, Steven, Hodgkin, Matthew N., Davey, John and Ladds, Graham (2009) Dual positive and negative regulation of GPCR signaling by GTP hydrolysis. Cellular Signalling, Vol.21 (No.7). pp. 1151-1160. doi:10.1016/j.cellsig.2009.03.004 ISSN 0898-6568.
University of Liverpool
Gould, Peter D., Ugarte, Nicolas, Domijan, Mirela, Costa, Maria J. (Maria João), Foreman, Julia, MacGregor, Dana, Rose, Ken, Griffiths, Jayne, Millar, A. J. (Andrew J.), Finkenstädt, Bärbel, Penfield, Steven, Rand, D. A. (David A.), Halliday, Karen J. and Hall, Anthony J. W. (2013) Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology, Volume 9 . Article no. 650. doi:10.1038/msb.2013.7 ISSN 1744-4292.
University of Warwick
Woodcock, Dan J., Vance, Keith W., Komorowski, Michal, Koentges, Georgy, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number. Bioinformatics, Volume 29 (Number 12). pp. 1519-1525. doi:10.1093/bioinformatics/btt201 ISSN 1367-4803.
Komorowski, Michal, Finkenstädt, Bärbel, Harper, Claire V. and Rand, D. A. (David A.) (2009) Bayesian inference of biochemical kinetic parameters using the linear noise approximation. BMC Bioinformatics, Vol.10 (No.343). doi:10.1186/1471-2105-10-343 ISSN 1471-2105.
University of Warwick. Department of Statistics
Finkenstädt, Bärbel, Heron, Elizabeth A., Komorowski, Michal, Edwards, Kieron, Tang, Sanyi, Harper, Claire V., Davis, Julian R. E., White, Michael R. H., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Reconstruction of transcriptional dynamics from gene reporter data using differential equations. Bioinformatics, Vol.24 (No.24). pp. 2901-2907. doi:10.1093/bioinformatics/btn562 ISSN 1367-4803.
Warwick Medical School
McCloskey, Conor, Rada, Cara, Bailey, Elizabeth H., McCavera, Samantha, Berg, Hugo van den , Atia, Jolene, Rand, D. A., Shmygol, Anatoly, Chan, Yi-Wah, Quenby, Siobhan et al.
(2014)
The inwardly rectifying K+ channel KIR7.1 controls uterine excitability throughout pregnancy.
EMBO Molecular Medicine, Volume 6
(Number 9).
pp. 1161-1174.
doi:10.15252/emmm.201403944
ISSN 1757-4676.
Wellcome Trust
Spiller, David G., Wood, Christopher D., Rand, D. A. (David A.) and White, Michael R. H. (2010) Measurement of single-cell dynamics. Nature, Vol.465 (No.7299). pp. 736-745. ISSN 0028-0836 doi:10.1038/nature09232
Wellcome Trust (London, England)
Featherstone, Katie, Hey, Kirsty L., Momiji, Hiroshi, McNamara, A. V., Patist, A. L., Woodburn, J., Spiller , D. G., Christian, H. C., McNeilly, A. S., Mullins, J. J. , Finkenstädt, Bärbel, Rand, D. A. (David A.), White, M. R. H. and David, J. R. E. (2016) Spatially coordinated dynamic gene transcription in living pituitary tissue. eLife, 5 . e08494. doi:10.7554/eLife.08494 ISSN 2050-084X.
Hey, Kirsty L., Momiji, Hiroshi, Featherstone, Karen, Davis, Julian R.E., White, Michael R.H., Rand, D. A. (David A.) and Finkenstädt, Bärbel (2015) A stochastic transcriptional switch model for single cell imaging data. Biostatistics, 16 (4). pp. 655-669. doi:10.1093/biostatistics/kxv010 ISSN 1465-4644.
Woodcock, Dan J., Vance, Keith W., Komorowski, Michal, Koentges, Georgy, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number. Bioinformatics, Volume 29 (Number 12). pp. 1519-1525. doi:10.1093/bioinformatics/btt201 ISSN 1367-4803.
Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, D. A. (David A.), Davis, Julian R. E. and White, Michael R. H. (2011) Dynamic analysis of stochastic transcription cycles. PLos Biology, Vol.9 (No.4). doi:10.1371/journal.pbio.1000607 ISSN 1545-7885.
Komorowski, Michal, Finkenstädt, Bärbel, Harper, Claire V. and Rand, D. A. (David A.) (2009) Bayesian inference of biochemical kinetic parameters using the linear noise approximation. BMC Bioinformatics, Vol.10 (No.343). doi:10.1186/1471-2105-10-343 ISSN 1471-2105.
Finkenstädt, Bärbel, Heron, Elizabeth A., Komorowski, Michal, Edwards, Kieron, Tang, Sanyi, Harper, Claire V., Davis, Julian R. E., White, Michael R. H., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Reconstruction of transcriptional dynamics from gene reporter data using differential equations. Bioinformatics, Vol.24 (No.24). pp. 2901-2907. doi:10.1093/bioinformatics/btn562 ISSN 1367-4803.
Wolfson Foundation
Pinto, A. A., Rand, D. A. (David A.) and Ferreira, F. (2010) Arc exchange systems and renormalization. Journal of Difference Equations and Applications, Vol.16 (No.4). pp. 347-371. doi:10.1080/10236190802422059 ISSN 1023-6198.
Pinto, A. A. and Rand, D. A. (David A.) (2010) Train tracks with C1+ self-renormalizable structures. Journal of Difference Equations and Applications, Vol.16 (No.8). pp. 945-962. doi:10.1080/10236190802629356 ISSN 1023-6198.
Wolfson Foundation (WF)
Pinto, A. A. and Rand, D. A. (David A.) (2005) Rigidity of hyperbolic sets on surfaces. Journal of the London Mathematical Society, Vol.71 (No.2). pp. 481-502. doi:10.1112/S0024610704006052 ISSN 0024-6107.
This list was generated on Thu Apr 18 22:00:26 2024 BST.