2021

Mabry, Makenzie E., Turner-Hissong, Sarah D., Gallagher, Evan Y., McAlvay, Alex C., An, Hong, Edger, Patrick P., Moore, Jonathan D., Pink, David A. C., Teakle, Graham R., Stevens, Chris J., Barker, Guy C., Labate, Joanne, Fuller, Dorian Q., Allaby, Robin G., Beissinger, Timothy, Decker, Jared E., Gore, Michael A. and Pires, J. Chris (2021) The evolutionary history of wild, domesticated, and feral Brassica oleracea (Brassicaceae). Molecular Biology and Evolution, 38 (10). pp. 4419-4434. doi:10.1093/molbev/msab183 ISSN 0737-4038.

Hilton, Sally, Picot, Emma, Schreiter, Susanne, Bass, David, Norman, Keith, Oliver, Anna E., Moore, Jonathan D., Mauchline, Tim H., Mills, Peter R., Teakle, Graham R., Clark, Ian. M., Hirsch, Penny. R., van der Gast, Christopher J. and Bending, G. D. (2021) Identification of microbial signatures linked to oilseed rape yield decline at the landscape scale. Microbiome, 9 . 19. doi:10.1186/s40168-020-00972-0 ISSN 2049-2618.

2018

Jackisch, Laura, Kumsaiyai, W., Moore, Jonathan D., Al-Daghri, N. M., Kyrou, Ioannis, Barber, T. M., Randeva, Harpal S., Kumar, Sudhesh, Tripathi, Gyanendra and McTernan, P. G. (2018) Differential expression of Lp-PLA2 in obesity, type 2 diabetes and the influence of lipids. Diabetologia, 61 . pp. 1155-1166. doi:10.1007/s00125-018-4558-6 ISSN 0012-186X.

2017

Walker, Liam, Boddington, Clare, Jenkins, Dafyd J., Wang, Ying, Gronlund, Jesper T., Hulsmans, J., Kumar, Sanjeev, Patel, Dhaval, Moore, Jonathan D., Carter, Anthony, Samavedam, Siva, Bonomo, Giovanni, Hersh, David S., Coruzzi, Gloria‏, Burroughs, Nigel John and Gifford, Miriam L. (2017) Changes in gene expression in space and time orchestrate environmentally mediated shaping of root architecture. The Plant Cell, 29 (10). pp. 2393-2412. doi:10.1105/tpc.16.00961 ISSN 1040-4651.

Lidbury, Ian, Murphy, Andrew, Fraser, Tandra D., Bending, G. D., Jones, Alexandra M., Moore, Jonathan D., Goodall, Andrew, Tibbetts, Mark, Hammond, John P., Scanlan, David J. and Wellington, E. M. H. (2017) Identification of extracellular glycerophosphodiesterases in Pseudomonas and their role in soil organic phosphorus remineralisation. Scientific Reports, 7 (1). 2179. doi:10.1038/s41598-017-02327-6 ISSN 2045-2322.

Orosa, Beatriz, He, Qin, Mesmar, Joelle, Gilroy, Eleanor M., McLellan, Hazel, Yang, Chengwei, Craig, Adam, Bailey, Mark, Zhang, Cunjin, Moore, Jonathan D., Boevink, Petra C., Tian, Zhendong, Birch, Paul R. J. and Sadanandom, Ari (2017) BTB-BACK domain protein POB1 suppresses immune cell death by targeting ubiquitin E3 ligase PUB17 for degradation. PLoS Genetics, 13 (1). e1006540. doi:10.1371/journal.pgen.1006540 ISSN 1553-7390.

Walley, Peter Glen, Hough, Gemma, Moore, Jonathan D., Carder, John, Elliott, Marian, Mead, A. (Andrew), Jones, Julie, Teakle, Graham R., Barker, Guy C., Buchanan-Wollaston, Vicky, Hand, Paul, Pink, David and Collier, Rosemary (2017) Towards new sources of resistance to the currant-lettuce aphid (Nasonovia ribisnigri). Molecular Breeding, 37 (1). 4. doi:10.1007/s11032-016-0606-4 ISSN 1380-3743.

2016

(2016) Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis. The Plant Cell, 28 (2). pp. 345-366. doi:10.1105/tpc.15.00910 ISSN 1040-4651.

Lucas, Emma S., Dyer, Nigel P., Murakami, Keisuke, Hou Lee, Yie, Chan, Yi-Wah, Grimaldi, Giulia, Muter, Joanne, Brighton, Paul (Paul J.), Moore, Jonathan D., Patel, Gnyaneshwari, Chan, Jerry K.Y., Takeda, Satoru, Lam, Eric W-F., Quenby, Siobhan, Ott, Sascha and Brosens, Jan J. (2016) Loss of endometrial plasticity in recurrent pregnancy loss. Stem Cells, 34 (2). pp. 346-356. doi:10.1002/stem.2222 ISSN 1066-5099.

2015

(2015) Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with pseudomonas syringae pv tomato DC3000. The Plant Cell, 27 (11). pp. 3038-3064. doi:10.1105/tpc.15.00471 ISSN 1040-4651.

The NIEHS-NCATS-UNC DREAM Toxicogenetics Collaboration (Including:

). (2015) Prediction of human population responses to toxic compounds by a collaborative competition. Nature Biotechnology, 33 (9). pp. 933-940. doi:10.1038/nbt.3299 ISSN 1087-0156.

Walley, Peter Glen and Moore, Jonathan D. (2015) Biotechnology and genomics : exploiting the potential of CWR. In: Redden, Robert and Yadav, Shyam Singh and Maxted, Nigel and Dulloo, Mohammad Ehsan and Guarino, Luigi and Smith, Paul, (eds.) Crop Wild Relatives and Climate Change. Hoboken, New Jersey: Wiley-Blackwell. ISBN 9781118854334

Muter, Joanne, Lucas, Emma S., Chan, Yi-Wah, Brighton, Paul (Paul J.), Moore, Jonathan D., Lacey, Lauren, Quenby, Siobhan, Lam, Eric W.-F. and Brosens, Jan J. (2015) The clock protein period 2 synchronizes mitotic expansion and decidual transformation of human endometrial stromal cells. The FASEB Journal, Volume 29 (Number 4). pp. 1603-1614. doi:10.1096/fj.14-267195 ISSN 0892-6638.

Adaikalakoteswari, Antonysunil, Finer, Sarah, Voyias, Philip D., McCarthy, Ciara M., Vatish, Manu, Moore, Jonathan D., Smart-Halajko, Melissa, Bawazeer, Nahla M., Al-Daghri, Nasser M., McTernan, P. G., Kumar, Sudhesh, Hitman, Graham A., Saravanan, Ponnusamy and Tripathi, Gyanendra (2015) Vitamin B12 insufficiency induces cholesterol biosynthesis by limiting s-adenosylmethionine and modulating the methylation of SREBF1 and LDLR genes. Clinical Epigenetics, Volume 7 (Number 1). pp. 1-14. Article number 14. doi:10.1186/s13148-015-0046-8 ISSN 1868-7075.

2014

Ingham, Victoria A., Jones, Christopher M., Pignatelli, Patricia, Balabanidou, Vasileia, Vontas, John, Wagstaff, Simon C., Moore, Jonathan D. and Ranson, Hilary (2014) Dissecting the organ specificity of insecticide resistance candidate genes in Anopheles gambiae : known and novel candidate genes. BMC Genomics, Volume 15 (Number 1). Article number 1018. doi:10.1186/1471-2164-15-1018 ISSN 1471-2164.

Chan, Yi-Wah, Berg, Hugo van den , Moore, Jonathan D., Quenby, Siobhan and Blanks, Andrew M. (2014) Assessment of myometrial transcriptome changes associated with spontaneous human labour by high throughput RNA-seq. Experimental Physiology, Volume 99 (Number 3). pp. 510-524. doi:10.1113/expphysiol.2013.072868 ISSN 0958-0670.

Murakami, Keisuke, Lee, Yie Hou, Lucas, Emma S., Chan, Yi-Wah, Peter Durairaj, Ruban Rex, Takeda, Satoru, Moore, Jonathan D., Tan, Bee K., Quenby, Siobhan, Chan, Jerry K. Y., Gargett, Caroline E. and Brosens, Jan J. (2014) Decidualization induces a secretome switch in perivascular niche cells of the human endometrium. Endocrinology, Volume 155 (Number 11). pp. 4542-4553. doi:10.1210/en.2014-1370 ISSN 0013-7227.

Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.

Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.

(2014) Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea. Genome Biology, Volume 15 (Number 6). Article number R77. doi:10.1186/gb-2014-15-6-r77 ISSN 1474-7596.

Rosell, M., Kaforou, Myrsini, Frontini, Andrea, Okolo, A., Chan, Yi-Wah, Nikolopoulou, E., Millership, S., Fenech, M. E., MacIntyre, D., Turner, J. O., Moore, Jonathan D., Blackburn, E., Gullick, W. J., Cinti, S., Montana, G., Parker, Malcolm G. and Christian, Mark (2014) Brown and white adipose tissues : intrinsic differences in gene expression and response to cold exposure in mice. AJP: Endocrinology and Metabolism, Volume 306 (Number 8). E945-E964. doi:10.1152/ajpendo.00473.2013 ISSN 0193-1849.

(2014) Uterine selection of human embryos at implantation. Scientific Reports, 4 . 3894. doi:10.1038/srep03894 ISSN 2045-2322.

Nellist, Charlotte F., Qian, Wei, Jenner, Carol E., Moore, Jonathan D., Zhang, Shujiang, Wang, Xiaowu, Briggs, William H., Barker, Guy C., Sun, Rifei and Walsh, John A. (2014) Multiple copies of eukaryotic translation initiation factors in Brassica rapafacilitate redundancy, enabling diversification through variation in splicing and broad-spectrum virus resistance. The Plant Journal, Volume 77 (Number 2). pp. 261-268. doi:10.1111/tpj.12389 ISSN 0960-7412.

2013

Bari, Muhammad F., Brown, Helen, Nicholson, Andrew G., Kerr, Keith M., Gosney, John R., Wallace, William A., Soomro, Irshad, Muller, Salli, Peat, Danielle, Moore, Jonathan D., Ward, Lesley A., Freidin, Maxim B., Lim, Eric, Vatish, Manu and Snead, David R. J. (2013) BAI3, CDX2 and VIL1 : a panel of three antibodies to distinguish small cell from large cell neuroendocrine lung carcinomas. Histopathology, Volume 64 (Number 4). pp. 547-556. doi:10.1111/his.12278 ISSN 0309-0167.

Hickman, Richard J., Hill, C., Penfold, Christopher A., Breeze, Emily, Bowden, Laura, Moore, Jonathan D., Zhang, Peijun, Jackson, Alison C., Cooke, Emma J., Bewicke-Copley, Findlay, Mead, A. (Andrew), Beynon, Jim, Wild, David L., Denby, Katherine J., Ott, Sascha and Buchanan-Wollaston, Vicky (2013) A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves. The Plant Journal, Volume 75 (Number 1). pp. 26-39. doi:10.1111/tpj.12194 ISSN 0960-7412.

Traka, Maria H., Saha, Shikha, Huseby, Stine, Kopriva, Stanislav, Walley, Peter Glen, Barker, Guy C., Moore, Jonathan D., Mero, Gene, van den Bosch, Frans, Constant, Howard, Kelly, Leo, Schepers, Hans, Boddupalli, Sekhar and Mithen, Richard F. (2013) Genetic regulation of glucoraphanin accumulation in Beneforté® broccoli. New Phytologist, Volume 198 (Number 4). pp. 1085-1095. doi:10.1111/nph.12232 ISSN 0028-646X.

Brown, Paul E., Baxter, Laura, Hickman, Richard J., Beynon, Jim, Moore, Jonathan D. and Ott, Sascha (2013) MEME-LaB : motif analysis in clusters. Bioinformatics . doi:10.1093/bioinformatics/btt248 ISSN 1367-4803.

Leonelli, Sabina, Smirnoff, N., Moore, Jonathan D., Cook, Charis and Bastow, Ruth (2013) Making open data work for plant scientists. Journal of Experimental Botany, Volume 64 (Number 14). pp. 4109-4117. doi:10.1093/jxb/ert273 ISSN 0022-0957.

2012

Baxter, Laura, Jironkin, Aleksey, Hickman, R. D. G., Moore, Jonathan D., Barrington, Christopher, Krusche, Peter, Dyer, Nigel, Buchanan-Wollaston, Vicky, Tiskin, Alexander, Beynon, Jim, Denby, Katherine J. and Ott, Sascha (2012) Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. The Plant Cell, Vol.24 (No.10). pp. 3949-3965. doi:10.1105/tpc.112.103010 ISSN 1040-4651.

(2012) Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. The Plant Cell, Vol.24 (No.9). pp. 3530-3557. doi:10.1105/tpc.112.102046 ISSN 1040-4651.

Palmer, Sarah A., Clapham, A. J., Rose, P., Freitas, F. O., Owen, B. D., Beresford-Jones, D., Moore, Jonathan D., Kitchen, James and Allaby, Robin G. (2012) Archaeogenomic evidence of punctuated genome evolution in Gossypium. Molecular Biology and Evolution, Volume 29 (Number 8). pp. 2031-2038. doi:10.1093/molbev/mss070 ISSN 0737-4038.

Thomas, L., Hodgson, D. A., Wentzel, A., Nieselt, K., Ellingsen, T. E., Moore, Jonathan D., Morrissey, Edward R., Legaie, Roxane, Wohlleben, W., Rodriguez-Garcia, A., Martin, J. F., Burroughs, Nigel John, Wellington, E. M. H. and Smith, M. C. M. (2012) Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture. Molecular & Cellular Proteomics, Vol.11 (No.2). M111.013797. doi:10.1074/mcp.M111.013797 ISSN 1535-9476.

Walley, Peter Glen, Teakle, Graham R., Moore, Jonathan D., Allender, Charlotte J., Pink, David A. C., Buchanan-Wollaston, Vicky and Barker, Guy C. (2012) Developing genetic resources for pre-breeding in Brassica oleracea L. : an overview of the UK perspective. Journal of Plant Biotechnology, Volume 39 (Number 1). pp. 62-68. doi:10.5010/JPB.2012.39.1.062 ISSN 1598-6365.

Kitchen, James, Moore, Jonathan D., Palmer, Sarah A. and Allaby, Robin G. (2012) MCMC-ODPR : primer design optimization using Markov Chain Monte Carlo sampling. BMC Bioinformatics, Vol.13 (No.1). p. 287. doi:10.1186/1471-2105-13-287 ISSN 1471-2105.

2011

Arabidopsis Interactome Mapping Consortium (Including:

). (2011) Evidence for network evolution in an Arabidopsis interactome map. Science, Vol.333 (No.6042). pp. 601-607. doi:10.1126/science.1203877 ISSN 0036-8075.

European Union Effectoromics Consortium (Including:

). (2011) Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science, Vol.333 (No.6042). pp. 596-601. doi:10.1126/science.1203659 ISSN 0036-8075.

(2011) High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell, The, Vol.23 (No.3). pp. 873-894. doi:10.1105/tpc.111.083345 ISSN 1040-4651.

Moore, Jonathan D., Jironkin, Aleksey, Chandler, Dave, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. Journal of General Virology, Vol.92 . pp. 156-161. doi:10.1099/vir.0.025965-0 ISSN 0022-1317.

2010

Bari, M. F., Snead, David R. J., Moore, Jonathan D., Zehnder, Daniel and Brown, Helen (Helen E.) (2010) Analysis of expression array data to identify biomarkers specific for small cell lung cancer. In: 1st Meeting on Molecular Origins of Lung Cancer – Prospects for Personalized Prevention and Therapy, San Diego, California, January 10-14, 2010. Published in: Journal of Thoracic Oncology, Vol.5 (No.6 Suppl. 3). S256-S256. doi:10.1097/JTO.0b013e3181dc2e2b ISSN 1556-0864.

Hassani-Pak, Keywan, Legaie, Roxane, Canevet, Catherine, Berg, Hugo van den, Moore, Jonathan D. and Rawlings, Christopher J. (2010) Enhancing data integration with text analysis to find proteins implicated in plant stress response. Journal of Integrative Bioinformatics, Vol.7 (No.3). p. 121. doi:10.2390/biecoll-jib-2010-121 ISSN 1613-4516.

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (Article 10). doi:10.1186/1471-2164-11-10 ISSN 1471-2164.

2009

Palmer, Sarah A., Moore, Jonathan D., Clapham, Alan J., Rose, Pamela and Allaby, Robin G. (2009) Archaeogenetic evidence of ancient Nubian barley evolution from six to two-row indicates local adaptation. PLoS ONE , Vol.4 (No.7). e6301. doi:10.1371/journal.pone.0006301 ISSN 1932-6203.

2008

Alix, Karine, Joets, Johann, Ryder, Carol D., Moore, Jonathan D., Barker, Guy C., Bailey, John P., King , Graham J. and Heslop-Harrison, J. (John) (2008) The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation. Plant Journal, Vol.56 (No.6). pp. 1030-1044. doi:10.1111/j.1365-313X.2008.03660.x ISSN 0960-7412.

Moore, Jonathan D. and Allaby, Robin G. (2008) TreeMos : a high-throughput phylogenomic approach to find and visualize phylogenetic mosaicism. Bioinformatics, Vol.24 (No.5). pp. 717-718. doi:10.1093/bioinformatics/btn027 ISSN 1367-4803.

Moore, Jonathan D., Kelly, Shelagh P., Iriondo, Jose M., Ford-Lloyd , Brian V. and Maxted, Nigel (2008) CWRML: representing crop wild relative conservation and use data in XML. BMC Bioinformatics, Vol.9 (No.116). doi:10.1186/1471-2105-9-116 ISSN 1471-2105.