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Number of items: 61.
Embacher, Peter A., Germanova, Tsvetelina E., Roscioli, Emanuele, McAinsh, Andrew D. and Burroughs, Nigel J. (2022) Bayesian inference of multi-point macromolecular architecture mixtures at nanometre resolution. PLoS Computational Biology, 18 (12). e1010765. doi:10.1371/journal.pcbi.1010765 ISSN 1553-7358.
Castrogiovanni, CΓ©dric, Inchingolo, Alessio, Harrison, Jonathan U., Dudka, Damian, Sen, Onur, Burroughs, Nigel John, McAinsh, Andrew D. and Meraldi, Patrick (2022) Evidence for a HURP/EB free mixed-nucleotide zone in kinetochore-microtubules. Nature Communications, 13 . 4704. doi:10.1038/s41467-022-32421-x ISSN 2041-1723.
Harrison, Jonathan, Sen, Onur, McAinsh, Andrew D. and Burroughs, Nigel John (2022) Kinetochore tracking in 3D from lattice light sheet imaging data with KiT. Bioinformatics, 38 (12). pp. 3315-3317. doi:10.1093/bioinformatics/btac330 ISSN 1460-2059.
Germanova, Tsvetelina E., Roscioli, Emanuele, Harrison, Jonathan, McAinsh, Andrew D. and Burroughs, Nigel John (2021) Subcellular Euclidean distance measurements with multicolor fluorescence localization imaging in cultured cells. STAR Protocols, 2 (4). 100774. doi:10.1016/j.xpro.2021.100774 ISSN 2666-1667.
Sen, Onur, Harrison, Jonathan, Burroughs, Nigel John and McAinsh, Andrew D. (2021) Kinetochore life histories reveal an Aurora-B-dependent error correction mechanism in anaphase. Developmental Cell, 56 (22). pp. 3082-3099. doi:10.1016/j.devcel.2021.10.007 ISSN 1534-5807.
Roscioli, Emanuele, Germanova, Tsvetelina E., Smith, Christopher A., Embacher, Peter A., Erent, Muriel, Thompson, Amelia I., Burroughs, Nigel John and McAinsh, Andrew D. (2020) Ensemble-Level Organization of Human Kinetochores and Evidence for Distinct Tension and Attachment Sensors. Cell Reports, 31 (4). p. 107535. doi:10.1016/j.celrep.2020.107535 ISSN 2211-1247.
JuriΔ, Ivan, Hibberd, Julian, Blatt, Mike R. and Burroughs, Nigel John (2019) Computational modelling predicts substantial carbon assimilation gains for C3 plants with a single-celled C4 biochemical pump. PLoS Computational Biology, 15 (9). e1007373. doi:10.1371/journal.pcbi.1007373 ISSN 1553-7358.
Cheffings, Thomas H., Burroughs, Nigel John and Balasubramanian, Mohan K. (2019) Actin turnover ensures uniform tension distribution during cytokinetic actomyosin ring contraction. Molecular Biology of the Cell, 30 (8). pp. 933-1049. doi:10.1091/mbc.E18-08-0511 ISSN 1059-1524.
Bazarova, Alina, Nieduszynski, Conrad A, Akerman, Ildem and Burroughs, Nigel John (2019) Bayesian inference of origin firing time distributions, origin interference and licencing probabilities from Next Generation Sequencing data. Nucleic Acids Research, 47 (5). pp. 2229-2243. doi:10.1093/nar/gkz094 ISSN 0305-1048.
Oliveira, Bruno M. P. M., Trinchet, Ricard, Otero Espinar, MarΓa Victoria, Pinto, Alberto and Burroughs, Nigel (2018) Modelling the suppression of autoimmunity after pathogen infection. Mathematical Methods in the Applied Sciences, 41 (18). pp. 8565-8570. doi:10.1002/mma.4899 ISSN 0170-4214 .
Slator, Paddy J. and Burroughs, Nigel John (2018) A hidden Markov model for detecting confinement in single particle tracking trajectories. Biophysical Journal, 115 (9). pp. 1741-1754. doi:10.1016/j.bpj.2018.09.005 ISSN 0006-3495.
Wedagedera, J. R. and Burroughs, N. J. (2018) Comparison of a dual strategy for t-cell activation under inhibition of the CD4 receptor. Journal of Biological Systems, 26 (02). pp. 321-338. doi:10.1142/S0218339018500158 ISSN 0218-3390.
Peet, Daniel R., Burroughs, Nigel John and Cross, R. A. (2018) Kinesin expands and stabilizes the GDP-microtubule lattice. Nature Nanotechnology, 13 (5). pp. 386-391. doi:10.1038/s41565-018-0084-4 ISSN 1748-3395.
Smith, Chris A., Burroughs, Nigel John and McAinsh, Andrew D. (2018) Mitotic live-cell imaging at different timescales. In: Maiato, Helder and Schuh, Melina, (eds.) Mitosis and Meiosis Part B. Methods in Cell Biology, 145 . Cambridge, Massachuetts: Elsevier, pp. 1-27. ISBN 9780128141427
Walker, Liam, Boddington, Clare, Jenkins, Dafyd J., Wang, Ying, Gronlund, Jesper T., Hulsmans, J., Kumar, Sanjeev, Patel, Dhaval, Moore, Jonathan D., Carter, Anthony, Samavedam, Siva, Bonomo, Giovanni, Hersh, David S., Coruzzi, Gloriaβ, Burroughs, Nigel John and Gifford, Miriam L. (2017) Changes in gene expression in space and time orchestrate environmentally mediated shaping of root architecture. The Plant Cell, 29 (10). pp. 2393-2412. doi:10.1105/tpc.16.00961 ISSN 1040-4651.
JuriΔ, Ivan, GonzΓ‘lez-PΓ©rez, Vinicio, Hibberd, Julian, Edwards, Gerald and Burroughs, Nigel John (2017) Size matters for single-cell C4 photosynthesis in Bienertia. Journal of Experimental Botany, 68 (2). pp. 255-267. doi:10.1093/jxb/erw374 ISSN 0022-0957.
Smith, Chris A., McAinsh, Andrew D. and Burroughs, Nigel John (2016) Human kinetochores are swivel joints that mediate microtubule attachments. eLife, 5 . e16159. doi:10.7554/eLife.16159 ISSN 2050-084X.
Cheffings, Thomas H., Burroughs, Nigel John and Balasubramanian, Mohan K. (2016) Actomyosin ring formation and tension generation in eukaryotic cytokinesis. Current Biology, 26 (15). R719-R737. doi:10.1016/j.cub.2016.06.071 ISSN 0960-9822.
Barchinger, Sarah E., Pirbadian, Sahand, Sambles, Christine, Baker, Carol S., Leung, Kar Man, Burroughs, Nigel John, El-Naggar, Mohamed Y., Golbeck, John H. and Spormann, A. M. (2016) Regulation of gene expression in Shewanella oneidensis MR-1 during electron acceptor limitation and bacterial nanowire formation. Applied and Environmental Microbiology, 82 (17). pp. 5428-5443. doi:10.1128/AEM.01615-16 ISSN 0099-2240.
Armond, Jonathan W., Vladimirou, Elina, McAinsh, Andrew D. and Burroughs, Nigel John (2016) KiT : a MATLAB package for kinetochore tracking. Bioinformatics, 32 (12). pp. 1917-1919. doi:10.1093/bioinformatics/btw087 ISSN 1367-4803.
Armond, Jonathan W., Harry, Edward, McAinsh, Andrew D. and Burroughs, Nigel John (2015) Inferring the forces controlling metaphase kinetochore oscillations by reverse engineering system dynamics. PLoS Computational Biology, 11 (11). e1004607. doi:10.1371/journal.pcbi.1004607 ISSN 1553-7358.
Slator, Paddy J., Cairo, Christopher W. and Burroughs, Nigel John (2015) Detection of diffusion heterogeneity in single particle tracking trajectories using a hidden Markov model with measurement noise propagation. PLoS One, 10 (10). e0140759. doi:10.1371/journal.pone.0140759 ISSN 1932-6203.
Burroughs, Nigel John, Harry, Edward and McAinsh, Andrew D. (2015) Super-resolution kinetochore tracking reveals the mechanisms of human sister kinetochore directional switching. eLife, 4 . e09500. doi:10.7554/eLife.09500 ISSN 2050-084X.
Armond, Jonathan W., Vladimirou, Elina, Erent, Muriel, McAinsh, Andrew D. and Burroughs, Nigel John (2015) Probing microtubule polymerisation state at single kinetochores during metaphase chromosome motion. Journal of Cell Science, Volume 128 (Number 10). pp. 1991-2001. doi:10.1242/jcs.168682 ISSN 0021-9533.
Bryan, Samantha J., Burroughs, Nigel John, Shevela, Dmitriy, Yu, Jianfeng, Rupprecht, Eva, Liu, Lu-Ning, Mastroianni, Giulia, Xue, Quan, Llorente-Garcia, Isabel, Leake, Mark C., Eichacker, Lutz A., Schneider, Dirk, Nixon, Peter J. and Mullineaux, Conrad W. (2014) Localisation and interactions of the Vipp1 protein in cyanobacteria. Molecular Microbiology, Volume 94 (Number 5). pp. 1179-1195. doi:10.1111/mmi.12826 ISSN 0950-382X.
Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645 ISSN 2167-9843.
Wang, Ying, Penfold, Christopher A., Hodgson, D. A., Gifford, Miriam L. and Burroughs, Nigel John (2014) Correcting for link loss in causal network inference caused by regulator interference. Bioinformatics, Volume 30 (Number 19). pp. 2779-2786. doi:10.1093/bioinformatics/btu388 ISSN 1367-4803.
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Thomas, L., Hodgson, D. A., Wentzel, A., Nieselt, K., Ellingsen, T. E., Moore, Jonathan D., Morrissey, Edward R., Legaie, Roxane, Wohlleben, W., Rodriguez-Garcia, A., Martin, J. F., Burroughs, Nigel John, Wellington, E. M. H. and Smith, M. C. M. (2012) Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture. Molecular & Cellular Proteomics, Vol.11 (No.2). M111.013797. doi:10.1074/mcp.M111.013797 ISSN 1535-9476.
Iqbal, Mudassar, Mast, Yvonne, Amin, Rafat, Hodgson, D. A., Wohlleben, W. and Burroughs, Nigel John (2012) Extracting regulator activity profiles by integration of de novo motifs and expression data : characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor. Nucleic Acids Research, Vol.40 (No.12). pp. 5227-5239. doi:10.1093/nar/gks205 ISSN 0305-1048.
MartΓn, Juan F. , Santos-Beneit, Fernando, RodrΓguez-GarcΓa, Antonio , Sola-Landa, Alberto , Smith, Margaret C. M., Ellingsen, Trond E., Nieselt, Kay , Burroughs, Nigel John and Wellington, E. M. H. (2012) Transcriptomic studies of phosphate control of primary and secondary metabolism in Streptomyces coelicolor. Applied Microbiology and Biotechnology, Vol.95 (No.1). pp. 61-75. doi:10.1007/s00253-012-4129-6 ISSN 0175-7598.
Tsibidis, George D., Burroughs, Nigel John, Gaze, William H. and Wellington, E. M. H. (2011) Semi-automated Acanthamoeba polyphaga detection and computation of Salmonella typhimurium concentration in spatio-temporal images. Micron, Vol.42 (No.8). pp. 911-920. doi:10.1016/j.micron.2011.06.010 ISSN 0968-4328.
Morrissey, Edward R., JuΓ‘rez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2011) Inferring the time-invariant topology of a nonlinear sparse gene regulatory network using fully Bayesian spline autoregression. Biostatistics, Vol.12 (No.4). pp. 682-694. doi:10.1093/biostatistics/kxr009 ISSN 1465-4644.
Burroughs, Nigel John, KΓΆhler, Karsten, Miloserdov, Vladimir, Dustin, Michael L., Van der Merwe, P. Anton and Davis, Daniel M. (2011) Boltzmann energy-based image analysis demonstrates that extracellular domain size differences explain protein segregation at immune synapses. PLoS Computational Biology, Vol.7 (No.8). e1002076. doi:10.1371/journal.pcbi.1002076 ISSN 1553-7358.
Bryan, Samantha J., Burroughs, Nigel John, Evered, Carol, Sacharz, Joanna, Nenninger, Anja, Mullineaux, Conrad W. and Spence, Edward M. (2011) Loss of the SPHF homologue Slr1768 leads to a catastrophic failure in the maintenance of thylakoid membranes in synechocystis sp. PCC 6803. PLoS One, Vol.6 (No.5). e19625. doi:10.1371/journal.pone.0019625 ISSN 1932-6203.
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, B. M. P. M. and Pinto, Alberto A. (2011) Autoimmunity arising from bystander proliferation of T cells in an immune response model. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1389-1393. doi:10.1016/j.mcm.2010.01.020 ISSN 0895-7177.
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, A. A. and Ferreira, M. (2011) Immune response dynamics. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1410-1419. doi:10.1016/j.mcm.2010.02.040 ISSN 0895-7177.
Vladimirou, Elina, Harry, Edward, Burroughs, Nigel John and McAinsh, Andrew D. (2011) Springs, clutches and motors : driving forward kinetochore mechanism by modelling. Chromosome Research, Volume 19 (Number 3). pp. 409-421. doi:10.1007/s10577-011-9191-x ISSN 0967-3849.
Moore, Jonathan D., Jironkin, Aleksey, Chandler, Dave, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. Journal of General Virology, Vol.92 . pp. 156-161. doi:10.1099/vir.0.025965-0 ISSN 0022-1317.
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, Bruno M. P. M. and Pinto, Alberto A. (2011) A transcritical bifurcation in an immune response model. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1101-1106. doi:10.1080/10236190903095291 ISSN 1023-6198.
Pinto, A. A., Burroughs, Nigel John, Ferreira, M. and Oliveira, B. M. P. M. (2010) Dynamics of immunological models. Acta Biotheoretica, Vol.58 (No.4). pp. 391-404. doi:10.1007/s10441-010-9117-6 ISSN 0001-5342.
KΓΆhler, Karsten, Xiong, Shiqiu, Brzostek, Joanna, Mehrabi, Maryam, Eissmann, Philipp, Harrison, Alice, Cordoba, Shaun-Paul, Oddos, Stephane, Miloserdov, Vladimir, Gould, Keith, Burroughs, Nigel John, Van der Merwe, Philip Anton and Davis, Daniel M. (2010) Matched sizes of activating and inhibitory receptor/ligand pairs are required for optimal signal integration by human Natural Killer cells. PL o S One, Vol.5 (No.11). e15374. doi:10.1371/journal.pone.0015374 ISSN 1932-6203.
Morrissey, Edward R., JuΓ‘rez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2010) On reverse engineering of gene interaction networks using time course data with repeated measurements. Bioinformatics, Vol.26 (No.18). pp. 2305-2312. doi:10.1093/bioinformatics/btq421 ISSN 1367-4803.
Yang, J., Koehler, K., Davis, D. M. and Burroughs, Nigel John (2010) An improved strip FRAP method for estimating diffusion coefficients : correcting for the degree of photobleaching. Journal of Microscopy, Vol.238 (No.3). pp. 240-253. doi:10.1111/j.1365-2818.2009.03347.x ISSN 0022-2720.
Nieselt, Kay, Battke, Florian, Herbig, Alexander, Bruheim, Per, Wentzel, Alexander, Jakobsen, Γyvind M., Sletta, HΓ₯vard, Alam, Mohammad T., Merlo, Maria E., Moore, Jonathan D. et al.
(2010)
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.
BMC Genomics, Vol.11
(Article 10).
doi:10.1186/1471-2164-11-10
ISSN 1471-2164.
Nieselt, Kay, Battke, Florian, Herbig, Alexander, Bruheim, Per, Wentzel, Alexander, Jakobsen, Γyvind M, Sletta, HΓ₯vard, Alam, Mohammad Tauqee, Merlo, Maria E., Moore, Jonathan et al.
(2010)
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.
BMC Genomics, 11
.
p. 10.
doi:DOI: 10.1186/1471-2164-11-10
ISSN 1471-2164.
Whitelam, Stephen, Bretschneider, Till and Burroughs, Nigel John (2009) Transformation from spots to waves in a model of actin pattern formation. Physical Review Letters, Vol.102 (No.19). Article: 198103. doi:10.1103/PhysRevLett.102.198103 ISSN 0031-9007.
Berg, Laila, Lale, Rahmi, Bakke, Ingrid, Burroughs, Nigel John and Valla, Svein (2009) The expression of recombinant genes in Escherichia colican be strongly stimulated at the transcript production level by mutating the DNA-region corresponding to the 5β²-untranslated part of mRNA. Microbial Biotechnology, Vol.2 (No.3). pp. 379-389. doi:10.1111/j.1751-7915.2009.00107.x ISSN 1751-7907.
Berg, Laila, Lale, Rahmi, Bakke, Ingrid, Burroughs, Nigel John and Valla, Svein (2009) The expression of recombinant genes inEscherichia colican be strongly stimulated at the transcript production level by mutating the DNA-region corresponding to the 5β²-untranslated part of mRNA. Microbial Biotechnology, Volume 2 (Number 3). pp. 379-389. doi:10.1111/j.1751-7915.2009.00107.x ISSN 1751-7907.
Bryan, Michael J., Burroughs, Nigel John, Spence, Edward M., Clokie, Martha R. J., Mann, Nicholas H. and Bryan, Samantha J. (2008) Evidence for the intense exchange of MazG in marine cyanophages by horizontal gene transfer. PL o S One, Vol.3 (No.4). doi:10.1371/journal.pone.0002048 ISSN 1932-6203.
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, Alberto A. and Sequeira, H. J. T. (2008) Sensibility of the quorum growth thresholds controlling local immune responses. Mathematical and Computer Modelling, Vol.47 (No.7-8). pp. 714-725. doi:10.1016/j.mcm.2007.06.007 ISSN 0895-7177.
Burroughs, Nigel John and Marenduzzo, Davide (2007) Nonequilibrium-driven motion in actin networks: comet tails and moving beads. Physical Review Letters, Vol.98 (No.23). Article: 238302. doi:10.1103/PhysRevLett.98.238302 ISSN 0031-9007.
Jow, H., Amos, W., Luo, H., Zhang, Y. and Burroughs, Nigel John (2007) A markov chain Monte Carlo method for estimating population mixing using Y-chromosome markers: mixing of the Han people in China. Annals of Human Genetics, Vol.71 (No.3). pp. 407-420. doi:10.1111/j.1469-1809.2006.00329.x ISSN 0003-4800.
Burroughs, Nigel John and van der Merwe, P. Anton (2007) Stochasticity and spatial heterogeneity in T-cell activation. Immunological Reviews, Vol.216 (No.1). pp. 69-80. ISSN 0105-2896 doi:10.1111/j.1600-065X.2006.00486.x
Chattopadhyay, Amit K. and Burroughs, Nigel John (2007) Close contact fluctuations : the seeding of signalling domains in the immunological synapse. EPL (Europhysics Letters), Volume 77 (Number 4). doi:10.1209/0295-5075/77/48003 ISSN 0295-5075.
Burroughs, Nigel John, Lazic, Zorana and van der Merwe, P. Anton (2006) Ligand detection and discrimination by spatial relocalization: A kinase-phosphatase segregation model of TCR activation. Biophysical Journal, Vol.91 (No.5). pp. 1619-1629. doi:10.1529/biophysj.105.080044 ISSN 0006-3495.
Wedagedera, J. R. and Burroughs, Nigel John (2006) T-Cell activation: a queuing theory analysis at low agonist density. Biophysical Journal, Vol.91 (No.5). pp. 1604-1618. doi:10.1529/biophysj.105.066001 ISSN 0006-3495.
Burroughs, Nigel John, Mendes de Olivira, Bruno Miguel Paz and Pinto, Alberto A. (2006) Regulatory T cell adjustment of quorum growth thresholds and the control of local immune responses. Journal of Theoretical Biology, Volume 241 (Number 1). pp. 134-141. doi:10.1016/j.jtbi.2005.11.010 ISSN 0022-5193.
Burroughs, Nigel John and Marenduzzo, Davide (2006) Growth of a semi-flexible polymer close to a fluctuating obstacle: application to cytoskeletal actin fibres and testing of ratchet models. In: Workshop on Biopolymers 2005, Trieste, ITALY, MAY 30-JUN 03, 2005. Published in: Journal of Physics-Condensed Matter, Volume 18 (Number 14 Sp. Iss. SI). S357-S374. doi:10.1088/0953-8984/18/14/S17 ISSN 0953-8984.
Burroughs, Nigel John and WΓΌlfing, Christoph (2002) Differential segregation in a cell-cell contact interface: the dynamics of the immunological synapse. Biophysical Journal, Vol.83 (No.4). pp. 1784-1796. doi:10.1016/S0006-3495(02)73944-1 ISSN 0006-3495.
This list was generated on Thu Mar 28 13:50:02 2024 GMT.