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Jump to: BioSim E. U. Network of Excellence | Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC) | Calouste Gulbenkian Foundation | Calouste Gulbenkian Foundation | Dow University of Health Sciences | Engineering and Physical Sciences Research Council (EPSRC) | Engineering and Physical Sciences Research Council (EPSRC) | European Commission (EC) | European Research Area Network (ERA-NET) | European Social Fund (ESF) | European Union (EU) | FCT | Fundação Calouste Gulbenkian (FCG) | Fundação para a Ciência e a Tecnologia (FCT) | Great Britain. Department for Environment, Food and Rural Affairs (DEFRA) | Great Britain. Dept. for Environment, Food & Rural Affairs (DEFRA) | LIAAD-INESC Porto LA | Marie Curie Cancer Care | Medical Research Council (Great Britain) (MRC) | Ministerio CTES | Ministerio da Ciencia e da Tecnologia | Ministerio da Ciencia, Tecnologia e do Ensino Superior | National Institutes of Health (U.S.) (NIH) | National Science Foundation (U.S.) (NSF) | Natural Environment Research Council (Great Britain) (NERC) | Natural Sciences and Engineering Research Council of Canada (NSERC) | Norges forskningsråd [Norwegian Research Council] | Norges forskningsråd [Research Council of Norway] (NF) | Oxford Centre for Integrative Systems Biology | POCTI | PRESTA | PRODYN-ESF | Pakistan. Higher Education Commission | Portugal. Ministério da Ciência e do Ensino Superior | Portugal. Ministério da Ciência, Tecnologia e Ensino Superior (MCTES) | Research Center of Mathematics of University of Minho | Royal Society (Great Britain) | Scotland | Scotland. Scottish Government | Seventh Framework Programme (European Commission) (FP7) | Sixth Framework Programme (European Commission) (FP6) | U. S. Department of Energy | Universidade do Minho (UdM) | Universidade do Minho. Centro de Matematica | Universidade do Minho. Centro de Matemática | Universidade do Porto | Universidade do Porto (UP) | Universidade do Porto. Centro de Matematica | Universidade do Porto. Faculdade de Ciência | University of Warwick | Warwick Systems Biology Doctoral Training Centre | Warwick's Centre for Scientific Computing | Wellcome Trust (London, England) | Wolfson Royal Society
Number of items: 105.
BioSim E. U. Network of Excellence
Whitelam, Stephen, Bretschneider, Till and Burroughs, Nigel John (2009) Transformation from spots to waves in a model of actin pattern formation. Physical Review Letters, Vol.102 (No.19). Article: 198103. doi:10.1103/PhysRevLett.102.198103 ISSN 0031-9007.
Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC)
Jurić, Ivan, González-Pérez, Vinicio, Hibberd, Julian, Edwards, Gerald and Burroughs, Nigel John (2017) Size matters for single-cell C4 photosynthesis in Bienertia. Journal of Experimental Botany, 68 (2). pp. 255-267. doi:10.1093/jxb/erw374 ISSN 0022-0957.
Smith, Chris A., McAinsh, Andrew D. and Burroughs, Nigel John (2016) Human kinetochores are swivel joints that mediate microtubule attachments. eLife, 5 . e16159. doi:10.7554/eLife.16159 ISSN 2050-084X.
Armond, Jonathan W., Vladimirou, Elina, McAinsh, Andrew D. and Burroughs, Nigel John (2016) KiT : a MATLAB package for kinetochore tracking. Bioinformatics, 32 (12). pp. 1917-1919. doi:10.1093/bioinformatics/btw087 ISSN 1367-4803.
Armond, Jonathan W., Harry, Edward, McAinsh, Andrew D. and Burroughs, Nigel John (2015) Inferring the forces controlling metaphase kinetochore oscillations by reverse engineering system dynamics. PLoS Computational Biology, 11 (11). e1004607. doi:10.1371/journal.pcbi.1004607 ISSN 1553-7358.
Burroughs, Nigel John, Harry, Edward and McAinsh, Andrew D. (2015) Super-resolution kinetochore tracking reveals the mechanisms of human sister kinetochore directional switching. eLife, 4 . e09500. doi:10.7554/eLife.09500 ISSN 2050-084X.
Armond, Jonathan W., Vladimirou, Elina, Erent, Muriel, McAinsh, Andrew D. and Burroughs, Nigel John (2015) Probing microtubule polymerisation state at single kinetochores during metaphase chromosome motion. Journal of Cell Science, Volume 128 (Number 10). pp. 1991-2001. doi:10.1242/jcs.168682 ISSN 0021-9533.
Bryan, Samantha J., Burroughs, Nigel John, Shevela, Dmitriy, Yu, Jianfeng, Rupprecht, Eva, Liu, Lu-Ning, Mastroianni, Giulia, Xue, Quan, Llorente-Garcia, Isabel, Leake, Mark C., Eichacker, Lutz A., Schneider, Dirk, Nixon, Peter J. and Mullineaux, Conrad W. (2014) Localisation and interactions of the Vipp1 protein in cyanobacteria. Molecular Microbiology, Volume 94 (Number 5). pp. 1179-1195. doi:10.1111/mmi.12826 ISSN 0950-382X.
Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645 ISSN 2167-9843.
Wang, Ying, Penfold, Christopher A., Hodgson, D. A., Gifford, Miriam L. and Burroughs, Nigel John (2014) Correcting for link loss in causal network inference caused by regulator interference. Bioinformatics, Volume 30 (Number 19). pp. 2779-2786. doi:10.1093/bioinformatics/btu388 ISSN 1367-4803.
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Iqbal, Mudassar, Mast, Yvonne, Amin, Rafat, Hodgson, D. A., Wohlleben, W. and Burroughs, Nigel John (2012) Extracting regulator activity profiles by integration of de novo motifs and expression data : characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor. Nucleic Acids Research, Vol.40 (No.12). pp. 5227-5239. doi:10.1093/nar/gks205 ISSN 0305-1048.
Burroughs, Nigel John, Köhler, Karsten, Miloserdov, Vladimir, Dustin, Michael L., Van der Merwe, P. Anton and Davis, Daniel M. (2011) Boltzmann energy-based image analysis demonstrates that extracellular domain size differences explain protein segregation at immune synapses. PLoS Computational Biology, Vol.7 (No.8). e1002076. doi:10.1371/journal.pcbi.1002076 ISSN 1553-7358.
Bryan, Samantha J., Burroughs, Nigel John, Evered, Carol, Sacharz, Joanna, Nenninger, Anja, Mullineaux, Conrad W. and Spence, Edward M. (2011) Loss of the SPHF homologue Slr1768 leads to a catastrophic failure in the maintenance of thylakoid membranes in synechocystis sp. PCC 6803. PLoS One, Vol.6 (No.5). e19625. doi:10.1371/journal.pone.0019625 ISSN 1932-6203.
Moore, Jonathan D., Jironkin, Aleksey, Chandler, Dave, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. Journal of General Virology, Vol.92 . pp. 156-161. doi:10.1099/vir.0.025965-0 ISSN 0022-1317.
Köhler, Karsten, Xiong, Shiqiu, Brzostek, Joanna, Mehrabi, Maryam, Eissmann, Philipp, Harrison, Alice, Cordoba, Shaun-Paul, Oddos, Stephane, Miloserdov, Vladimir, Gould, Keith, Burroughs, Nigel John, Van der Merwe, Philip Anton and Davis, Daniel M. (2010) Matched sizes of activating and inhibitory receptor/ligand pairs are required for optimal signal integration by human Natural Killer cells. PL o S One, Vol.5 (No.11). e15374. doi:10.1371/journal.pone.0015374 ISSN 1932-6203.
Morrissey, Edward R., Juárez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2010) On reverse engineering of gene interaction networks using time course data with repeated measurements. Bioinformatics, Vol.26 (No.18). pp. 2305-2312. doi:10.1093/bioinformatics/btq421 ISSN 1367-4803.
Yang, J., Koehler, K., Davis, D. M. and Burroughs, Nigel John (2010) An improved strip FRAP method for estimating diffusion coefficients : correcting for the degree of photobleaching. Journal of Microscopy, Vol.238 (No.3). pp. 240-253. doi:10.1111/j.1365-2818.2009.03347.x ISSN 0022-2720.
Calouste Gulbenkian Foundation
Pinto, A. A., Burroughs, Nigel John, Ferreira, M. and Oliveira, B. M. P. M. (2010) Dynamics of immunological models. Acta Biotheoretica, Vol.58 (No.4). pp. 391-404. doi:10.1007/s10441-010-9117-6 ISSN 0001-5342.
Calouste Gulbenkian Foundation
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, B. M. P. M. and Pinto, Alberto A. (2011) Autoimmunity arising from bystander proliferation of T cells in an immune response model. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1389-1393. doi:10.1016/j.mcm.2010.01.020 ISSN 0895-7177.
Dow University of Health Sciences
Iqbal, Mudassar, Mast, Yvonne, Amin, Rafat, Hodgson, D. A., Wohlleben, W. and Burroughs, Nigel John (2012) Extracting regulator activity profiles by integration of de novo motifs and expression data : characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor. Nucleic Acids Research, Vol.40 (No.12). pp. 5227-5239. doi:10.1093/nar/gks205 ISSN 0305-1048.
Engineering and Physical Sciences Research Council (EPSRC)
Smith, Chris A., McAinsh, Andrew D. and Burroughs, Nigel John (2016) Human kinetochores are swivel joints that mediate microtubule attachments. eLife, 5 . e16159. doi:10.7554/eLife.16159 ISSN 2050-084X.
Armond, Jonathan W., Harry, Edward, McAinsh, Andrew D. and Burroughs, Nigel John (2015) Inferring the forces controlling metaphase kinetochore oscillations by reverse engineering system dynamics. PLoS Computational Biology, 11 (11). e1004607. doi:10.1371/journal.pcbi.1004607 ISSN 1553-7358.
Bryan, Samantha J., Burroughs, Nigel John, Shevela, Dmitriy, Yu, Jianfeng, Rupprecht, Eva, Liu, Lu-Ning, Mastroianni, Giulia, Xue, Quan, Llorente-Garcia, Isabel, Leake, Mark C., Eichacker, Lutz A., Schneider, Dirk, Nixon, Peter J. and Mullineaux, Conrad W. (2014) Localisation and interactions of the Vipp1 protein in cyanobacteria. Molecular Microbiology, Volume 94 (Number 5). pp. 1179-1195. doi:10.1111/mmi.12826 ISSN 0950-382X.
Wang, Ying, Penfold, Christopher A., Hodgson, D. A., Gifford, Miriam L. and Burroughs, Nigel John (2014) Correcting for link loss in causal network inference caused by regulator interference. Bioinformatics, Volume 30 (Number 19). pp. 2779-2786. doi:10.1093/bioinformatics/btu388 ISSN 1367-4803.
Yang, J., Koehler, K., Davis, D. M. and Burroughs, Nigel John (2010) An improved strip FRAP method for estimating diffusion coefficients : correcting for the degree of photobleaching. Journal of Microscopy, Vol.238 (No.3). pp. 240-253. doi:10.1111/j.1365-2818.2009.03347.x ISSN 0022-2720.
Engineering and Physical Sciences Research Council (EPSRC)
Vladimirou, Elina, Harry, Edward, Burroughs, Nigel John and McAinsh, Andrew D. (2011) Springs, clutches and motors : driving forward kinetochore mechanism by modelling. Chromosome Research, Volume 19 (Number 3). pp. 409-421. doi:10.1007/s10577-011-9191-x ISSN 0967-3849.
European Commission (EC)
Bryan, Samantha J., Burroughs, Nigel John, Shevela, Dmitriy, Yu, Jianfeng, Rupprecht, Eva, Liu, Lu-Ning, Mastroianni, Giulia, Xue, Quan, Llorente-Garcia, Isabel, Leake, Mark C., Eichacker, Lutz A., Schneider, Dirk, Nixon, Peter J. and Mullineaux, Conrad W. (2014) Localisation and interactions of the Vipp1 protein in cyanobacteria. Molecular Microbiology, Volume 94 (Number 5). pp. 1179-1195. doi:10.1111/mmi.12826 ISSN 0950-382X.
Nieselt, Kay, Battke, Florian, Herbig, Alexander, Bruheim, Per, Wentzel, Alexander, Jakobsen, Øyvind M., Sletta, Håvard, Alam, Mohammad T., Merlo, Maria E., Moore, Jonathan D. et al.
(2010)
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.
BMC Genomics, Vol.11
(Article 10).
doi:10.1186/1471-2164-11-10
ISSN 1471-2164.
European Research Area Network (ERA-NET)
Nieselt, Kay, Battke, Florian, Herbig, Alexander, Bruheim, Per, Wentzel, Alexander, Jakobsen, Øyvind M, Sletta, Håvard, Alam, Mohammad Tauqee, Merlo, Maria E., Moore, Jonathan et al.
(2010)
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.
BMC Genomics, 11
.
p. 10.
doi:DOI: 10.1186/1471-2164-11-10
ISSN 1471-2164.
European Social Fund (ESF)
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, B. M. P. M. and Pinto, Alberto A. (2011) Autoimmunity arising from bystander proliferation of T cells in an immune response model. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1389-1393. doi:10.1016/j.mcm.2010.01.020 ISSN 0895-7177.
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, A. A. and Ferreira, M. (2011) Immune response dynamics. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1410-1419. doi:10.1016/j.mcm.2010.02.040 ISSN 0895-7177.
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, Alberto A. and Sequeira, H. J. T. (2008) Sensibility of the quorum growth thresholds controlling local immune responses. Mathematical and Computer Modelling, Vol.47 (No.7-8). pp. 714-725. doi:10.1016/j.mcm.2007.06.007 ISSN 0895-7177.
European Union (EU)
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, B. M. P. M. and Pinto, Alberto A. (2011) Autoimmunity arising from bystander proliferation of T cells in an immune response model. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1389-1393. doi:10.1016/j.mcm.2010.01.020 ISSN 0895-7177.
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, A. A. and Ferreira, M. (2011) Immune response dynamics. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1410-1419. doi:10.1016/j.mcm.2010.02.040 ISSN 0895-7177.
FCT
Pinto, A. A., Burroughs, Nigel John, Ferreira, M. and Oliveira, B. M. P. M. (2010) Dynamics of immunological models. Acta Biotheoretica, Vol.58 (No.4). pp. 391-404. doi:10.1007/s10441-010-9117-6 ISSN 0001-5342.
Fundação Calouste Gulbenkian (FCG)
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, A. A. and Ferreira, M. (2011) Immune response dynamics. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1410-1419. doi:10.1016/j.mcm.2010.02.040 ISSN 0895-7177.
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, Bruno M. P. M. and Pinto, Alberto A. (2011) A transcritical bifurcation in an immune response model. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1101-1106. doi:10.1080/10236190903095291 ISSN 1023-6198.
Fundação para a Ciência e a Tecnologia (FCT)
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, B. M. P. M. and Pinto, Alberto A. (2011) Autoimmunity arising from bystander proliferation of T cells in an immune response model. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1389-1393. doi:10.1016/j.mcm.2010.01.020 ISSN 0895-7177.
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, A. A. and Ferreira, M. (2011) Immune response dynamics. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1410-1419. doi:10.1016/j.mcm.2010.02.040 ISSN 0895-7177.
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, Bruno M. P. M. and Pinto, Alberto A. (2011) A transcritical bifurcation in an immune response model. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1101-1106. doi:10.1080/10236190903095291 ISSN 1023-6198.
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, Alberto A. and Sequeira, H. J. T. (2008) Sensibility of the quorum growth thresholds controlling local immune responses. Mathematical and Computer Modelling, Vol.47 (No.7-8). pp. 714-725. doi:10.1016/j.mcm.2007.06.007 ISSN 0895-7177.
Great Britain. Department for Environment, Food and Rural Affairs (DEFRA)
Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645 ISSN 2167-9843.
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Great Britain. Dept. for Environment, Food & Rural Affairs (DEFRA)
Moore, Jonathan D., Jironkin, Aleksey, Chandler, Dave, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. Journal of General Virology, Vol.92 . pp. 156-161. doi:10.1099/vir.0.025965-0 ISSN 0022-1317.
LIAAD-INESC Porto LA
Pinto, A. A., Burroughs, Nigel John, Ferreira, M. and Oliveira, B. M. P. M. (2010) Dynamics of immunological models. Acta Biotheoretica, Vol.58 (No.4). pp. 391-404. doi:10.1007/s10441-010-9117-6 ISSN 0001-5342.
Marie Curie Cancer Care
Vladimirou, Elina, Harry, Edward, Burroughs, Nigel John and McAinsh, Andrew D. (2011) Springs, clutches and motors : driving forward kinetochore mechanism by modelling. Chromosome Research, Volume 19 (Number 3). pp. 409-421. doi:10.1007/s10577-011-9191-x ISSN 0967-3849.
Medical Research Council (Great Britain) (MRC)
Burroughs, Nigel John, Köhler, Karsten, Miloserdov, Vladimir, Dustin, Michael L., Van der Merwe, P. Anton and Davis, Daniel M. (2011) Boltzmann energy-based image analysis demonstrates that extracellular domain size differences explain protein segregation at immune synapses. PLoS Computational Biology, Vol.7 (No.8). e1002076. doi:10.1371/journal.pcbi.1002076 ISSN 1553-7358.
Moore, Jonathan D., Jironkin, Aleksey, Chandler, Dave, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. Journal of General Virology, Vol.92 . pp. 156-161. doi:10.1099/vir.0.025965-0 ISSN 0022-1317.
Köhler, Karsten, Xiong, Shiqiu, Brzostek, Joanna, Mehrabi, Maryam, Eissmann, Philipp, Harrison, Alice, Cordoba, Shaun-Paul, Oddos, Stephane, Miloserdov, Vladimir, Gould, Keith, Burroughs, Nigel John, Van der Merwe, Philip Anton and Davis, Daniel M. (2010) Matched sizes of activating and inhibitory receptor/ligand pairs are required for optimal signal integration by human Natural Killer cells. PL o S One, Vol.5 (No.11). e15374. doi:10.1371/journal.pone.0015374 ISSN 1932-6203.
Yang, J., Koehler, K., Davis, D. M. and Burroughs, Nigel John (2010) An improved strip FRAP method for estimating diffusion coefficients : correcting for the degree of photobleaching. Journal of Microscopy, Vol.238 (No.3). pp. 240-253. doi:10.1111/j.1365-2818.2009.03347.x ISSN 0022-2720.
Ministerio CTES
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, Alberto A. and Sequeira, H. J. T. (2008) Sensibility of the quorum growth thresholds controlling local immune responses. Mathematical and Computer Modelling, Vol.47 (No.7-8). pp. 714-725. doi:10.1016/j.mcm.2007.06.007 ISSN 0895-7177.
Ministerio da Ciencia e da Tecnologia
Pinto, A. A., Burroughs, Nigel John, Ferreira, M. and Oliveira, B. M. P. M. (2010) Dynamics of immunological models. Acta Biotheoretica, Vol.58 (No.4). pp. 391-404. doi:10.1007/s10441-010-9117-6 ISSN 0001-5342.
Ministerio da Ciencia, Tecnologia e do Ensino Superior
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, B. M. P. M. and Pinto, Alberto A. (2011) Autoimmunity arising from bystander proliferation of T cells in an immune response model. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1389-1393. doi:10.1016/j.mcm.2010.01.020 ISSN 0895-7177.
National Institutes of Health (U.S.) (NIH)
Burroughs, Nigel John, Köhler, Karsten, Miloserdov, Vladimir, Dustin, Michael L., Van der Merwe, P. Anton and Davis, Daniel M. (2011) Boltzmann energy-based image analysis demonstrates that extracellular domain size differences explain protein segregation at immune synapses. PLoS Computational Biology, Vol.7 (No.8). e1002076. doi:10.1371/journal.pcbi.1002076 ISSN 1553-7358.
National Science Foundation (U.S.) (NSF)
Jurić, Ivan, González-Pérez, Vinicio, Hibberd, Julian, Edwards, Gerald and Burroughs, Nigel John (2017) Size matters for single-cell C4 photosynthesis in Bienertia. Journal of Experimental Botany, 68 (2). pp. 255-267. doi:10.1093/jxb/erw374 ISSN 0022-0957.
Natural Environment Research Council (Great Britain) (NERC)
Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645 ISSN 2167-9843.
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Natural Sciences and Engineering Research Council of Canada (NSERC)
Slator, Paddy J., Cairo, Christopher W. and Burroughs, Nigel John (2015) Detection of diffusion heterogeneity in single particle tracking trajectories using a hidden Markov model with measurement noise propagation. PLoS One, 10 (10). e0140759. doi:10.1371/journal.pone.0140759 ISSN 1932-6203.
Norges forskningsråd [Norwegian Research Council]
Nieselt, Kay, Battke, Florian, Herbig, Alexander, Bruheim, Per, Wentzel, Alexander, Jakobsen, Øyvind M., Sletta, Håvard, Alam, Mohammad T., Merlo, Maria E., Moore, Jonathan D. et al.
(2010)
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.
BMC Genomics, Vol.11
(Article 10).
doi:10.1186/1471-2164-11-10
ISSN 1471-2164.
Norges forskningsråd [Research Council of Norway] (NF)
Nieselt, Kay, Battke, Florian, Herbig, Alexander, Bruheim, Per, Wentzel, Alexander, Jakobsen, Øyvind M, Sletta, Håvard, Alam, Mohammad Tauqee, Merlo, Maria E., Moore, Jonathan et al.
(2010)
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.
BMC Genomics, 11
.
p. 10.
doi:DOI: 10.1186/1471-2164-11-10
ISSN 1471-2164.
Oxford Centre for Integrative Systems Biology
Bryan, Samantha J., Burroughs, Nigel John, Shevela, Dmitriy, Yu, Jianfeng, Rupprecht, Eva, Liu, Lu-Ning, Mastroianni, Giulia, Xue, Quan, Llorente-Garcia, Isabel, Leake, Mark C., Eichacker, Lutz A., Schneider, Dirk, Nixon, Peter J. and Mullineaux, Conrad W. (2014) Localisation and interactions of the Vipp1 protein in cyanobacteria. Molecular Microbiology, Volume 94 (Number 5). pp. 1179-1195. doi:10.1111/mmi.12826 ISSN 0950-382X.
POCTI
Pinto, A. A., Burroughs, Nigel John, Ferreira, M. and Oliveira, B. M. P. M. (2010) Dynamics of immunological models. Acta Biotheoretica, Vol.58 (No.4). pp. 391-404. doi:10.1007/s10441-010-9117-6 ISSN 0001-5342.
PRESTA
Morrissey, Edward R., Juárez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2010) On reverse engineering of gene interaction networks using time course data with repeated measurements. Bioinformatics, Vol.26 (No.18). pp. 2305-2312. doi:10.1093/bioinformatics/btq421 ISSN 1367-4803.
PRODYN-ESF
Pinto, A. A., Burroughs, Nigel John, Ferreira, M. and Oliveira, B. M. P. M. (2010) Dynamics of immunological models. Acta Biotheoretica, Vol.58 (No.4). pp. 391-404. doi:10.1007/s10441-010-9117-6 ISSN 0001-5342.
Pakistan. Higher Education Commission
Iqbal, Mudassar, Mast, Yvonne, Amin, Rafat, Hodgson, D. A., Wohlleben, W. and Burroughs, Nigel John (2012) Extracting regulator activity profiles by integration of de novo motifs and expression data : characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor. Nucleic Acids Research, Vol.40 (No.12). pp. 5227-5239. doi:10.1093/nar/gks205 ISSN 0305-1048.
Portugal. Ministério da Ciência e do Ensino Superior
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, Alberto A. and Sequeira, H. J. T. (2008) Sensibility of the quorum growth thresholds controlling local immune responses. Mathematical and Computer Modelling, Vol.47 (No.7-8). pp. 714-725. doi:10.1016/j.mcm.2007.06.007 ISSN 0895-7177.
Portugal. Ministério da Ciência, Tecnologia e Ensino Superior (MCTES)
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, A. A. and Ferreira, M. (2011) Immune response dynamics. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1410-1419. doi:10.1016/j.mcm.2010.02.040 ISSN 0895-7177.
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, Bruno M. P. M. and Pinto, Alberto A. (2011) A transcritical bifurcation in an immune response model. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1101-1106. doi:10.1080/10236190903095291 ISSN 1023-6198.
Research Center of Mathematics of University of Minho
Pinto, A. A., Burroughs, Nigel John, Ferreira, M. and Oliveira, B. M. P. M. (2010) Dynamics of immunological models. Acta Biotheoretica, Vol.58 (No.4). pp. 391-404. doi:10.1007/s10441-010-9117-6 ISSN 0001-5342.
Royal Society (Great Britain)
Bryan, Samantha J., Burroughs, Nigel John, Shevela, Dmitriy, Yu, Jianfeng, Rupprecht, Eva, Liu, Lu-Ning, Mastroianni, Giulia, Xue, Quan, Llorente-Garcia, Isabel, Leake, Mark C., Eichacker, Lutz A., Schneider, Dirk, Nixon, Peter J. and Mullineaux, Conrad W. (2014) Localisation and interactions of the Vipp1 protein in cyanobacteria. Molecular Microbiology, Volume 94 (Number 5). pp. 1179-1195. doi:10.1111/mmi.12826 ISSN 0950-382X.
Burroughs, Nigel John, Köhler, Karsten, Miloserdov, Vladimir, Dustin, Michael L., Van der Merwe, P. Anton and Davis, Daniel M. (2011) Boltzmann energy-based image analysis demonstrates that extracellular domain size differences explain protein segregation at immune synapses. PLoS Computational Biology, Vol.7 (No.8). e1002076. doi:10.1371/journal.pcbi.1002076 ISSN 1553-7358.
Köhler, Karsten, Xiong, Shiqiu, Brzostek, Joanna, Mehrabi, Maryam, Eissmann, Philipp, Harrison, Alice, Cordoba, Shaun-Paul, Oddos, Stephane, Miloserdov, Vladimir, Gould, Keith, Burroughs, Nigel John, Van der Merwe, Philip Anton and Davis, Daniel M. (2010) Matched sizes of activating and inhibitory receptor/ligand pairs are required for optimal signal integration by human Natural Killer cells. PL o S One, Vol.5 (No.11). e15374. doi:10.1371/journal.pone.0015374 ISSN 1932-6203.
Yang, J., Koehler, K., Davis, D. M. and Burroughs, Nigel John (2010) An improved strip FRAP method for estimating diffusion coefficients : correcting for the degree of photobleaching. Journal of Microscopy, Vol.238 (No.3). pp. 240-253. doi:10.1111/j.1365-2818.2009.03347.x ISSN 0022-2720.
Scotland
Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645 ISSN 2167-9843.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Scotland. Scottish Government
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Seventh Framework Programme (European Commission) (FP7)
Bryan, Samantha J., Burroughs, Nigel John, Shevela, Dmitriy, Yu, Jianfeng, Rupprecht, Eva, Liu, Lu-Ning, Mastroianni, Giulia, Xue, Quan, Llorente-Garcia, Isabel, Leake, Mark C., Eichacker, Lutz A., Schneider, Dirk, Nixon, Peter J. and Mullineaux, Conrad W. (2014) Localisation and interactions of the Vipp1 protein in cyanobacteria. Molecular Microbiology, Volume 94 (Number 5). pp. 1179-1195. doi:10.1111/mmi.12826 ISSN 0950-382X.
Sixth Framework Programme (European Commission) (FP6)
Iqbal, Mudassar, Mast, Yvonne, Amin, Rafat, Hodgson, D. A., Wohlleben, W. and Burroughs, Nigel John (2012) Extracting regulator activity profiles by integration of de novo motifs and expression data : characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor. Nucleic Acids Research, Vol.40 (No.12). pp. 5227-5239. doi:10.1093/nar/gks205 ISSN 0305-1048.
U. S. Department of Energy
Whitelam, Stephen, Bretschneider, Till and Burroughs, Nigel John (2009) Transformation from spots to waves in a model of actin pattern formation. Physical Review Letters, Vol.102 (No.19). Article: 198103. doi:10.1103/PhysRevLett.102.198103 ISSN 0031-9007.
Universidade do Minho (UdM)
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, B. M. P. M. and Pinto, Alberto A. (2011) Autoimmunity arising from bystander proliferation of T cells in an immune response model. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1389-1393. doi:10.1016/j.mcm.2010.01.020 ISSN 0895-7177.
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, Bruno M. P. M. and Pinto, Alberto A. (2011) A transcritical bifurcation in an immune response model. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1101-1106. doi:10.1080/10236190903095291 ISSN 1023-6198.
Universidade do Minho. Centro de Matematica
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, A. A. and Ferreira, M. (2011) Immune response dynamics. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1410-1419. doi:10.1016/j.mcm.2010.02.040 ISSN 0895-7177.
Universidade do Minho. Centro de Matemática
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, Alberto A. and Sequeira, H. J. T. (2008) Sensibility of the quorum growth thresholds controlling local immune responses. Mathematical and Computer Modelling, Vol.47 (No.7-8). pp. 714-725. doi:10.1016/j.mcm.2007.06.007 ISSN 0895-7177.
Universidade do Porto
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, B. M. P. M. and Pinto, Alberto A. (2011) Autoimmunity arising from bystander proliferation of T cells in an immune response model. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1389-1393. doi:10.1016/j.mcm.2010.01.020 ISSN 0895-7177.
Universidade do Porto (UP)
Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, Bruno M. P. M. and Pinto, Alberto A. (2011) A transcritical bifurcation in an immune response model. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1101-1106. doi:10.1080/10236190903095291 ISSN 1023-6198.
Universidade do Porto. Centro de Matematica
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, A. A. and Ferreira, M. (2011) Immune response dynamics. Mathematical and Computer Modelling, Volume 53 (Numbers 7-8). pp. 1410-1419. doi:10.1016/j.mcm.2010.02.040 ISSN 0895-7177.
Universidade do Porto. Faculdade de Ciência
Burroughs, Nigel John, Oliveira, B. M. P. M., Pinto, Alberto A. and Sequeira, H. J. T. (2008) Sensibility of the quorum growth thresholds controlling local immune responses. Mathematical and Computer Modelling, Vol.47 (No.7-8). pp. 714-725. doi:10.1016/j.mcm.2007.06.007 ISSN 0895-7177.
University of Warwick
Slator, Paddy J., Cairo, Christopher W. and Burroughs, Nigel John (2015) Detection of diffusion heterogeneity in single particle tracking trajectories using a hidden Markov model with measurement noise propagation. PLoS One, 10 (10). e0140759. doi:10.1371/journal.pone.0140759 ISSN 1932-6203.
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Bryan, Samantha J., Burroughs, Nigel John, Evered, Carol, Sacharz, Joanna, Nenninger, Anja, Mullineaux, Conrad W. and Spence, Edward M. (2011) Loss of the SPHF homologue Slr1768 leads to a catastrophic failure in the maintenance of thylakoid membranes in synechocystis sp. PCC 6803. PLoS One, Vol.6 (No.5). e19625. doi:10.1371/journal.pone.0019625 ISSN 1932-6203.
Bryan, Michael J., Burroughs, Nigel John, Spence, Edward M., Clokie, Martha R. J., Mann, Nicholas H. and Bryan, Samantha J. (2008) Evidence for the intense exchange of MazG in marine cyanophages by horizontal gene transfer. PL o S One, Vol.3 (No.4). doi:10.1371/journal.pone.0002048 ISSN 1932-6203.
Warwick Systems Biology Doctoral Training Centre
Morrissey, Edward R., Juárez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2010) On reverse engineering of gene interaction networks using time course data with repeated measurements. Bioinformatics, Vol.26 (No.18). pp. 2305-2312. doi:10.1093/bioinformatics/btq421 ISSN 1367-4803.
Warwick's Centre for Scientific Computing
Whitelam, Stephen, Bretschneider, Till and Burroughs, Nigel John (2009) Transformation from spots to waves in a model of actin pattern formation. Physical Review Letters, Vol.102 (No.19). Article: 198103. doi:10.1103/PhysRevLett.102.198103 ISSN 0031-9007.
Wellcome Trust (London, England)
Smith, Chris A., McAinsh, Andrew D. and Burroughs, Nigel John (2016) Human kinetochores are swivel joints that mediate microtubule attachments. eLife, 5 . e16159. doi:10.7554/eLife.16159 ISSN 2050-084X.
Armond, Jonathan W., Harry, Edward, McAinsh, Andrew D. and Burroughs, Nigel John (2015) Inferring the forces controlling metaphase kinetochore oscillations by reverse engineering system dynamics. PLoS Computational Biology, 11 (11). e1004607. doi:10.1371/journal.pcbi.1004607 ISSN 1553-7358.
Burroughs, Nigel John, Harry, Edward and McAinsh, Andrew D. (2015) Super-resolution kinetochore tracking reveals the mechanisms of human sister kinetochore directional switching. eLife, 4 . e09500. doi:10.7554/eLife.09500 ISSN 2050-084X.
Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645 ISSN 2167-9843.
Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524 ISSN 0305-1048.
Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, 10 (6). e1004230. doi:10.1371/journal.ppat.1004230 ISSN 1553-7374.
Wolfson Royal Society
Yang, J., Koehler, K., Davis, D. M. and Burroughs, Nigel John (2010) An improved strip FRAP method for estimating diffusion coefficients : correcting for the degree of photobleaching. Journal of Microscopy, Vol.238 (No.3). pp. 240-253. doi:10.1111/j.1365-2818.2009.03347.x ISSN 0022-2720.
This list was generated on Fri Apr 19 01:20:14 2024 BST.