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Jump to: Agropolis (Montpellier, France) | Alexander von Humboldt-Stiftung (AvHS) | Australian Research Council (ARC) | Bill & Melinda Gates Foundation | Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC) | COST Action | Cambridge Gates Trust | Canon Collins Educational Trust for Southern Africa (CCETSA) | Carl Tryggers Stiftelse för Vetenskaplig Forskning (Sweden) | Centre national de la recherche scientifique (France) (CNRS) | Claude Leon Foundation (South Africa) | Danmarks Grundforskningsfond [Danish National Research Foundation] | Engineering and Physical Sciences Research Council (EPSRC) | European Union (EU) | Gatsby Charitable Foundation (GCF) | Imperial College London. Environment Initiative | John Innes Centre | L'Oréal (Firm) | Marie Curie Fellowship Association (MCFA) | Max-Planck-Gesellschaft zur Förderung der Wissenschaften [Max Planck Society for the Advancement of Science] | National Institutes of Health (U.S.) (NIH) | National Research Foundation (South Africa) | National Research Foundation (South Africa) (NRF) | National Science Foundation (U.S.) (NSF) | PRESTA | Science Research Investment Fund (SRIF) | Seventh Framework Programme (European Commission) (FP7) | South African Table Grape Industry (SATI) | South African Technology and Human Resources for Industry Programme (THRIP) | Spain. Ministerio de Economía y Competitividad [Ministry of Economy and Competitiveness] (MINECO) | Unesco | United States. Department of Agriculture (USDA) | United States. Department of Energy | University of Cape Town | University of Cape Town. Committee on Research (UoCT) | University of Warwick. MOAC Doctoral Training Centre | University of Warwick. Molecular Organisation and Assembly in Cells | Warwick Systems Biology Doctoral Training Centre | Wine Industry Network of Expertise and Technology
Number of items: 64.
Agropolis (Montpellier, France)
Naidoo, Sanushka, Fouché-Weich, Joanne, Law, Philip J., Denby, Katherine J., Marco, Yves and Berger, Dave K. (2011) A eucalyptus bacterial wilt isolate from South Africa is pathogenic on Arabidopsis and manipulates host defences. Forest Pathology, Volume 41 (Number 2). pp. 101-113. doi:10.1111/j.1439-0329.2010.00642.x ISSN 1437-4781.
Alexander von Humboldt-Stiftung (AvHS)
Carstens, Maryke, McCrindle, Tyronne K., Adams, Nicolette, Diener, Anastashia, Guzha, Delroy T., Murray, Shane L., Parker, Jane E., Denby, Katherine J. and Ingle, Robert A. (2014) Increased resistance to biotrophic pathogens in the arabidopsis constitutive induced resistance 1 mutant is EDS1 and PAD4-dependent and modulated by environmental temperature. PLoS One, Volume 9 (Number 10). Article number e109853. doi:10.1371/journal.pone.0109853 ISSN 1932-6203.
Australian Research Council (ARC)
Cevik, Volkan, Kidd, B. N., Zhang, Peijun, Hills, Claire E., Kiddle, Steven J., Denby, Katherine J., Holub, E. B., Cahill, D. M., Manners, J. M., Schenk, P. M., Beynon, Jim and Kazan, K. (2012) MEDIATOR25 acts as an integrative Hub for the regulation of jasmonate-responsive gene expression in arabidopsis. Plant Physiology, Volume 160 (Number 1). pp. 541-555. doi:10.1104/pp.112.202697 ISSN 0032-0889.
Bill & Melinda Gates Foundation
Patron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, Farré, Gemma, Rogers, Christian et al.
(2015)
Standards for plant synthetic biology : a common syntax for exchange of DNA parts.
New Phytologist, 208
(1).
pp. 13-19.
doi:10.1111/nph.13532
ISSN 0028-646X.
Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC)
Windram, Oliver P. and Denby, Katherine J. (2015) Modelling signaling networks underlying plant defence. Current Opinion in Plant Biology, 27 . pp. 165-171. doi:10.1016/j.pbi.2015.07.007 ISSN 1369-5266.
Patron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, Farré, Gemma, Rogers, Christian et al.
(2015)
Standards for plant synthetic biology : a common syntax for exchange of DNA parts.
New Phytologist, 208
(1).
pp. 13-19.
doi:10.1111/nph.13532
ISSN 0028-646X.
Hickman, Richard J., Hill, C., Penfold, Christopher A., Breeze, Emily, Bowden, Laura, Moore, Jonathan D., Zhang, Peijun, Jackson, Alison C., Cooke, Emma J., Bewicke-Copley, Findlay, Mead, A. (Andrew), Beynon, Jim, Wild, David L., Denby, Katherine J., Ott, Sascha and Buchanan-Wollaston, Vicky (2013) A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves. The Plant Journal, Volume 75 (Number 1). pp. 26-39. doi:10.1111/tpj.12194 ISSN 0960-7412.
Baxter, Laura, Jironkin, Aleksey, Hickman, R. D. G., Moore, Jonathan D., Barrington, Christopher, Krusche, Peter, Dyer, Nigel, Buchanan-Wollaston, Vicky, Tiskin, Alexander, Beynon, Jim, Denby, Katherine J. and Ott, Sascha (2012) Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. The Plant Cell, Vol.24 (No.10). pp. 3949-3965. doi:10.1105/tpc.112.103010 ISSN 1040-4651.
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
Cevik, Volkan, Kidd, B. N., Zhang, Peijun, Hills, Claire E., Kiddle, Steven J., Denby, Katherine J., Holub, E. B., Cahill, D. M., Manners, J. M., Schenk, P. M., Beynon, Jim and Kazan, K. (2012) MEDIATOR25 acts as an integrative Hub for the regulation of jasmonate-responsive gene expression in arabidopsis. Plant Physiology, Volume 160 (Number 1). pp. 541-555. doi:10.1104/pp.112.202697 ISSN 0032-0889.
Penfold, Christopher A., Buchanan-Wollaston, Vicky, Denby, Katherine J. and Wild, David L. (2012) Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. Bioinformatics, Vol.28 (No.12). i233-i241. doi:10.1093/bioinformatics/bts222 ISSN 1367-4803.
Breeze, Emily, Harrison, Elizabeth, McHattie, Stuart, Hughes, Linda Karen, Hickman, Richard J., Hill, Claire, Kiddle, Steven J., Kim, Youn-sung, Penfold, Christopher A., Jenkins, Dafyd J. et al.
(2011)
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell, The, Vol.23
(No.3).
pp. 873-894.
doi:10.1105/tpc.111.083345
ISSN 1040-4651.
Morrissey, Edward R., Juárez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2010) On reverse engineering of gene interaction networks using time course data with repeated measurements. Bioinformatics, Vol.26 (No.18). pp. 2305-2312. doi:10.1093/bioinformatics/btq421 ISSN 1367-4803.
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. Journal of Computational Biology , Volume 17 (Number 3). pp. 355-367. doi:10.1089/cmb.2009.0175 ISSN 1066-5277.
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. In: Research in Computational Molecular Biology : Proceedings of the 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Lecture Notes in Computer Science, Volume 5541 . Berlin Heidelberg: Springer, pp. 201-216. ISBN 9783642020087
Kiddle, Steven J., Windram, Oliver P., McHattie, Stuart, Mead, A. (Andrew), Beynon, Jim, Buchanan-Wollaston, Vicky, Denby, Katherine J. and Mukherjee, Sach (2009) Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana. Bioinformatics, Vol.26 (No.3). pp. 355-362. doi:10.1093/bioinformatics/btp673 ISSN 1367-4811.
Savage, Richard S., Heller, K. (Katherine), Xu, Yang, Ghahramani, Zoubin, Truman, William M., Grant, Murray, Denby, Katherine J. and Wild, David L. (2009) R/BHC : fast Bayesian hierarchical clustering for microarray data. BMC Bioinformatics, 10 . 242. doi:10.1186/1471-2105-10-242 ISSN 1471-2105.
COST Action
Patron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, Farré, Gemma, Rogers, Christian et al.
(2015)
Standards for plant synthetic biology : a common syntax for exchange of DNA parts.
New Phytologist, 208
(1).
pp. 13-19.
doi:10.1111/nph.13532
ISSN 0028-646X.
Cambridge Gates Trust
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. Journal of Computational Biology , Volume 17 (Number 3). pp. 355-367. doi:10.1089/cmb.2009.0175 ISSN 1066-5277.
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. In: Research in Computational Molecular Biology : Proceedings of the 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Lecture Notes in Computer Science, Volume 5541 . Berlin Heidelberg: Springer, pp. 201-216. ISBN 9783642020087
Canon Collins Educational Trust for Southern Africa (CCETSA)
Petersen, Lindsay N., Ingle, Robert A., Knight, Marc R. and Denby, Katherine J. (2009) OXI1 protein kinase is required for plant immunity against Pseudomonas syringae in Arabidopsis. Journal of Experimental Botany, Vol.60 (No.13). pp. 3727-3735. doi:10.1093/jxb/erp219 ISSN 0022-0957.
Carl Tryggers Stiftelse för Vetenskaplig Forskning (Sweden)
Alexandersson, Erik, Becker, John V. W., Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J. and Vivier, Melané A. (2011) Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. BMC Research Notes, Vol.4 (No.1). p. 493. doi:10.1186/1756-0500-4-493 ISSN 1756-0500.
Centre national de la recherche scientifique (France) (CNRS)
Naidoo, Sanushka, Fouché-Weich, Joanne, Law, Philip J., Denby, Katherine J., Marco, Yves and Berger, Dave K. (2011) A eucalyptus bacterial wilt isolate from South Africa is pathogenic on Arabidopsis and manipulates host defences. Forest Pathology, Volume 41 (Number 2). pp. 101-113. doi:10.1111/j.1439-0329.2010.00642.x ISSN 1437-4781.
Claude Leon Foundation (South Africa)
Alexandersson, Erik, Becker, John V. W., Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J. and Vivier, Melané A. (2011) Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. BMC Research Notes, Vol.4 (No.1). p. 493. doi:10.1186/1756-0500-4-493 ISSN 1756-0500.
Danmarks Grundforskningsfond [Danish National Research Foundation]
Atwell, Susanna, Corwin, Jason A., Soltis, Nicole E., Subedy, Anushryia, Denby, Katherine J. and Kliebenstein, Daniel James (2015) Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity. Frontiers in Microbiology, 6 . pp. 1-14. 996. doi:10.3389/fmicb.2015.00996 ISSN 1664-302X.
Engineering and Physical Sciences Research Council (EPSRC)
Hickman, Richard J., Hill, C., Penfold, Christopher A., Breeze, Emily, Bowden, Laura, Moore, Jonathan D., Zhang, Peijun, Jackson, Alison C., Cooke, Emma J., Bewicke-Copley, Findlay, Mead, A. (Andrew), Beynon, Jim, Wild, David L., Denby, Katherine J., Ott, Sascha and Buchanan-Wollaston, Vicky (2013) A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves. The Plant Journal, Volume 75 (Number 1). pp. 26-39. doi:10.1111/tpj.12194 ISSN 0960-7412.
Baxter, Laura, Jironkin, Aleksey, Hickman, R. D. G., Moore, Jonathan D., Barrington, Christopher, Krusche, Peter, Dyer, Nigel, Buchanan-Wollaston, Vicky, Tiskin, Alexander, Beynon, Jim, Denby, Katherine J. and Ott, Sascha (2012) Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. The Plant Cell, Vol.24 (No.10). pp. 3949-3965. doi:10.1105/tpc.112.103010 ISSN 1040-4651.
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
Penfold, Christopher A., Buchanan-Wollaston, Vicky, Denby, Katherine J. and Wild, David L. (2012) Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. Bioinformatics, Vol.28 (No.12). i233-i241. doi:10.1093/bioinformatics/bts222 ISSN 1367-4803.
Breeze, Emily, Harrison, Elizabeth, McHattie, Stuart, Hughes, Linda Karen, Hickman, Richard J., Hill, Claire, Kiddle, Steven J., Kim, Youn-sung, Penfold, Christopher A., Jenkins, Dafyd J. et al.
(2011)
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell, The, Vol.23
(No.3).
pp. 873-894.
doi:10.1105/tpc.111.083345
ISSN 1040-4651.
Kiddle, Steven J., Windram, Oliver P., McHattie, Stuart, Mead, A. (Andrew), Beynon, Jim, Buchanan-Wollaston, Vicky, Denby, Katherine J. and Mukherjee, Sach (2009) Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana. Bioinformatics, Vol.26 (No.3). pp. 355-362. doi:10.1093/bioinformatics/btp673 ISSN 1367-4811.
Savage, Richard S., Heller, K. (Katherine), Xu, Yang, Ghahramani, Zoubin, Truman, William M., Grant, Murray, Denby, Katherine J. and Wild, David L. (2009) R/BHC : fast Bayesian hierarchical clustering for microarray data. BMC Bioinformatics, 10 . 242. doi:10.1186/1471-2105-10-242 ISSN 1471-2105.
Zou, Cunlu, Denby, Katherine J. and Feng, Jianfeng (2009) Granger causality vs. dynamic Bayesian network inference: a comparative study. BMC Bioinformatics, Vol.10 . Article number 122. doi:10.1186/1471-2105-10-122 ISSN 1471-2105.
European Union (EU)
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. Journal of Computational Biology , Volume 17 (Number 3). pp. 355-367. doi:10.1089/cmb.2009.0175 ISSN 1066-5277.
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. In: Research in Computational Molecular Biology : Proceedings of the 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Lecture Notes in Computer Science, Volume 5541 . Berlin Heidelberg: Springer, pp. 201-216. ISBN 9783642020087
Gatsby Charitable Foundation (GCF)
Patron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, Farré, Gemma, Rogers, Christian et al.
(2015)
Standards for plant synthetic biology : a common syntax for exchange of DNA parts.
New Phytologist, 208
(1).
pp. 13-19.
doi:10.1111/nph.13532
ISSN 0028-646X.
Imperial College London. Environment Initiative
Windram, Oliver P. and Denby, Katherine J. (2015) Modelling signaling networks underlying plant defence. Current Opinion in Plant Biology, 27 . pp. 165-171. doi:10.1016/j.pbi.2015.07.007 ISSN 1369-5266.
John Innes Centre
Patron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, Farré, Gemma, Rogers, Christian et al.
(2015)
Standards for plant synthetic biology : a common syntax for exchange of DNA parts.
New Phytologist, 208
(1).
pp. 13-19.
doi:10.1111/nph.13532
ISSN 0028-646X.
L'Oréal (Firm)
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
Marie Curie Fellowship Association (MCFA)
Savage, Richard S., Heller, K. (Katherine), Xu, Yang, Ghahramani, Zoubin, Truman, William M., Grant, Murray, Denby, Katherine J. and Wild, David L. (2009) R/BHC : fast Bayesian hierarchical clustering for microarray data. BMC Bioinformatics, 10 . 242. doi:10.1186/1471-2105-10-242 ISSN 1471-2105.
Max-Planck-Gesellschaft zur Förderung der Wissenschaften [Max Planck Society for the Advancement of Science]
Carstens, Maryke, McCrindle, Tyronne K., Adams, Nicolette, Diener, Anastashia, Guzha, Delroy T., Murray, Shane L., Parker, Jane E., Denby, Katherine J. and Ingle, Robert A. (2014) Increased resistance to biotrophic pathogens in the arabidopsis constitutive induced resistance 1 mutant is EDS1 and PAD4-dependent and modulated by environmental temperature. PLoS One, Volume 9 (Number 10). Article number e109853. doi:10.1371/journal.pone.0109853 ISSN 1932-6203.
National Institutes of Health (U.S.) (NIH)
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. Journal of Computational Biology , Volume 17 (Number 3). pp. 355-367. doi:10.1089/cmb.2009.0175 ISSN 1066-5277.
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. In: Research in Computational Molecular Biology : Proceedings of the 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Lecture Notes in Computer Science, Volume 5541 . Berlin Heidelberg: Springer, pp. 201-216. ISBN 9783642020087
National Research Foundation (South Africa)
Alexandersson, Erik, Becker, John V. W., Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J. and Vivier, Melané A. (2011) Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. BMC Research Notes, Vol.4 (No.1). p. 493. doi:10.1186/1756-0500-4-493 ISSN 1756-0500.
Petersen, Lindsay N., Ingle, Robert A., Knight, Marc R. and Denby, Katherine J. (2009) OXI1 protein kinase is required for plant immunity against Pseudomonas syringae in Arabidopsis. Journal of Experimental Botany, Vol.60 (No.13). pp. 3727-3735. doi:10.1093/jxb/erp219 ISSN 0022-0957.
National Research Foundation (South Africa) (NRF)
Carstens, Maryke, McCrindle, Tyronne K., Adams, Nicolette, Diener, Anastashia, Guzha, Delroy T., Murray, Shane L., Parker, Jane E., Denby, Katherine J. and Ingle, Robert A. (2014) Increased resistance to biotrophic pathogens in the arabidopsis constitutive induced resistance 1 mutant is EDS1 and PAD4-dependent and modulated by environmental temperature. PLoS One, Volume 9 (Number 10). Article number e109853. doi:10.1371/journal.pone.0109853 ISSN 1932-6203.
Naidoo, Sanushka, Fouché-Weich, Joanne, Law, Philip J., Denby, Katherine J., Marco, Yves and Berger, Dave K. (2011) A eucalyptus bacterial wilt isolate from South Africa is pathogenic on Arabidopsis and manipulates host defences. Forest Pathology, Volume 41 (Number 2). pp. 101-113. doi:10.1111/j.1439-0329.2010.00642.x ISSN 1437-4781.
National Science Foundation (U.S.) (NSF)
Atwell, Susanna, Corwin, Jason A., Soltis, Nicole E., Subedy, Anushryia, Denby, Katherine J. and Kliebenstein, Daniel James (2015) Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity. Frontiers in Microbiology, 6 . pp. 1-14. 996. doi:10.3389/fmicb.2015.00996 ISSN 1664-302X.
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
PRESTA
Morrissey, Edward R., Juárez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2010) On reverse engineering of gene interaction networks using time course data with repeated measurements. Bioinformatics, Vol.26 (No.18). pp. 2305-2312. doi:10.1093/bioinformatics/btq421 ISSN 1367-4803.
Science Research Investment Fund (SRIF)
Baxter, Laura, Jironkin, Aleksey, Hickman, R. D. G., Moore, Jonathan D., Barrington, Christopher, Krusche, Peter, Dyer, Nigel, Buchanan-Wollaston, Vicky, Tiskin, Alexander, Beynon, Jim, Denby, Katherine J. and Ott, Sascha (2012) Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. The Plant Cell, Vol.24 (No.10). pp. 3949-3965. doi:10.1105/tpc.112.103010 ISSN 1040-4651.
Seventh Framework Programme (European Commission) (FP7)
Zou, Cunlu, Denby, Katherine J. and Feng, Jianfeng (2009) Granger causality vs. dynamic Bayesian network inference: a comparative study. BMC Bioinformatics, Vol.10 . Article number 122. doi:10.1186/1471-2105-10-122 ISSN 1471-2105.
South African Table Grape Industry (SATI)
Alexandersson, Erik, Becker, John V. W., Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J. and Vivier, Melané A. (2011) Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. BMC Research Notes, Vol.4 (No.1). p. 493. doi:10.1186/1756-0500-4-493 ISSN 1756-0500.
South African Technology and Human Resources for Industry Programme (THRIP)
Alexandersson, Erik, Becker, John V. W., Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J. and Vivier, Melané A. (2011) Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. BMC Research Notes, Vol.4 (No.1). p. 493. doi:10.1186/1756-0500-4-493 ISSN 1756-0500.
Spain. Ministerio de Economía y Competitividad [Ministry of Economy and Competitiveness] (MINECO)
Patron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, Farré, Gemma, Rogers, Christian et al.
(2015)
Standards for plant synthetic biology : a common syntax for exchange of DNA parts.
New Phytologist, 208
(1).
pp. 13-19.
doi:10.1111/nph.13532
ISSN 0028-646X.
Unesco
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
United States. Department of Agriculture (USDA)
Atwell, Susanna, Corwin, Jason A., Soltis, Nicole E., Subedy, Anushryia, Denby, Katherine J. and Kliebenstein, Daniel James (2015) Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity. Frontiers in Microbiology, 6 . pp. 1-14. 996. doi:10.3389/fmicb.2015.00996 ISSN 1664-302X.
United States. Department of Energy
Patron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, Farré, Gemma, Rogers, Christian et al.
(2015)
Standards for plant synthetic biology : a common syntax for exchange of DNA parts.
New Phytologist, 208
(1).
pp. 13-19.
doi:10.1111/nph.13532
ISSN 0028-646X.
University of Cape Town
Carstens, Maryke, McCrindle, Tyronne K., Adams, Nicolette, Diener, Anastashia, Guzha, Delroy T., Murray, Shane L., Parker, Jane E., Denby, Katherine J. and Ingle, Robert A. (2014) Increased resistance to biotrophic pathogens in the arabidopsis constitutive induced resistance 1 mutant is EDS1 and PAD4-dependent and modulated by environmental temperature. PLoS One, Volume 9 (Number 10). Article number e109853. doi:10.1371/journal.pone.0109853 ISSN 1932-6203.
University of Cape Town. Committee on Research (UoCT)
Petersen, Lindsay N., Ingle, Robert A., Knight, Marc R. and Denby, Katherine J. (2009) OXI1 protein kinase is required for plant immunity against Pseudomonas syringae in Arabidopsis. Journal of Experimental Botany, Vol.60 (No.13). pp. 3727-3735. doi:10.1093/jxb/erp219 ISSN 0022-0957.
University of Warwick. MOAC Doctoral Training Centre
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. In: Research in Computational Molecular Biology : Proceedings of the 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Lecture Notes in Computer Science, Volume 5541 . Berlin Heidelberg: Springer, pp. 201-216. ISBN 9783642020087
University of Warwick. Molecular Organisation and Assembly in Cells
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. Journal of Computational Biology , Volume 17 (Number 3). pp. 355-367. doi:10.1089/cmb.2009.0175 ISSN 1066-5277.
Warwick Systems Biology Doctoral Training Centre
Morrissey, Edward R., Juárez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2010) On reverse engineering of gene interaction networks using time course data with repeated measurements. Bioinformatics, Vol.26 (No.18). pp. 2305-2312. doi:10.1093/bioinformatics/btq421 ISSN 1367-4803.
Wine Industry Network of Expertise and Technology
Alexandersson, Erik, Becker, John V. W., Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J. and Vivier, Melané A. (2011) Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. BMC Research Notes, Vol.4 (No.1). p. 493. doi:10.1186/1756-0500-4-493 ISSN 1756-0500.
This list was generated on Fri Apr 19 02:38:39 2024 BST.