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Journal Article

Dacheux, Estelle, Malys, Naglis, Meng, Xiang, Ramachandran, Vinoy, Mendes, Pedro and McCarthy, John E. G. (2017) Translation initiation events on structured eukaryotic mRNAs generate gene expression noise. Nucleic Acids Research, 45 (11). pp. 6981-6992. doi:10.1093/nar/gkx430 ISSN 0305-1048.

Meng, Xiang, Firczuk, Helena, Pietroni, Paola, Westbrook, Richard, Dacheux, Estelle, Mendes, Pedro and McCarthy, John E. G. (2016) Minimum-noise production of translation factor eIF4G maps to a mechanistically determined optimal rate control window for protein synthesis. Nucleic Acids Research, 45 (2). pp. 1015-1025. doi:10.1093/nar/gkw1194 ISSN 0305-1048.

Turner, Matthew A. P., Platts, James A. and Deeth, Robert J. (2016) Modeling of platinum-aryl interaction with amyloid-β peptide. Journal of Chemical Theory and Computation, 12 (3). pp. 1385-1392. doi:10.1021/acs.jctc.5b01045 ISSN 1549-9618.

Prindle, Arthur, Liu, Jintao, Asally, Munehiro, Ly, San, Garcia-Ojalvo, Jordi and Süel, Gürol M. (2015) Ion channels enable electrical communication in bacterial communities. Nature, 527 . pp. 59-63. doi:10.1038/nature15709 ISSN 0028-0836.

Garcia De Gonzalo, C. V., Denham, Emma, Mars, Ruben A. T., Stülke, J., Donk, W. A. van der and Dijl, Jan Maarten van (2015) The phosphoenolpyruvate : sugar phosphotransferase system is involved in sensitivity to the glucosylated bacteriocin sublancin. Antimicrobial agents and chemotherapy, 59 (11). pp. 6844-6854. doi:10.1128/AAC.01519-15 ISSN 0066-4804.

Liu, Jintao, Prindle, Arthur, Humphries, Jacqueline, Gabalda-Sagarra, Marçal, Asally, Munehiro, Lee, Dong-yeon D., Ly, San, Garcia-Ojalvo, Jordi and Süel, Gürol M. (2015) Metabolic co-dependence gives rise to collective oscillations within biofilms. Nature, 523 (7562). pp. 550-554. doi:10.1038/nature14660 ISSN 0028-0836.

Timofeeva, Yulia and Volynsk, Kirill E. (2015) Calmodulin as a major calcium buffer shaping vesicular release and short-term synaptic plasticity : facilitation through buffer dislocation. Frontiers in Cellular Neuroscience, 9 . pp. 1-13. 239. doi:10.3389/fncel.2015.00239 ISSN 1662-5102.

Girija, Umakhanth Venkatraman, Furze, Christopher M., Gingras, Alexandre R., Yoshizak, Takayuki, Ohanti, Katsuki, Marshall, Jamie E., Wallis, A. Katrine, Schwaeble, Wilhelm J., El-Mezgaeldi, Mohammed, Mitchell, Daniel A., Moody, Peter C. E., Wakamiya, Nobutaka and Wallis, Russell (2015) Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome. Biomed Central Public Health, Volume 13 . pp. 1-13. 27. doi:10.1186/s12915-015-0136-2 ISSN 1471-2458.

Girija, Umakhanth Venkatraman, Furze, Christopher M., Gingras, Alexandre R., Yoshizaki, Takayuki, Ohtani, Katsuki, Marshall, Jamie E., Wallis, A. Katrine, Schwaeble, Wilhelm J., El-Mezgueldi, Mohammed, Mitchell, Daniel A., Moody, Peter C. E., Wakamiya, Nobutaka and Wallis, Russell (2015) Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome. BMC biology, 13 (1). pp. 1-13. 27. doi:10.1186/s12915-015-0136-2 ISSN 1741-7007.

Gomes, M. Gabriela M., Lipsitch, Marc, Wargo, Andrew R., Kurath, Gael, Rebelo, Carlota, Medley, Graham and Coutinho, Antonio (2014) A missing dimension in measures of vaccination impacts. PLoS Pathogens, Volume 10 (Number 3). Article number e1003849. doi:10.1371/journal.ppat.1003849 ISSN 1553-7374.

Tang, Shangming, Copsey, Alice, Jordan, Philip W., Blitzblau, Hannah G., Newcombe, Sonya, Chan, Andrew Chi-ho, Newnham, Louise, Li, Zhaobo, Gray, Stephen, Herbert, Alex D., Arumugam, Prakash , Hochwagen, Andreas, Hunter, Neil and Hoffmann, Eva (2013) Smc5/6 coordinates formation and resolution of joint molecules with chromosome morphology to ensure meiotic divisions. PLoS Genetics, Volume 9 (Number 12). Article number e1004071. doi:10.1371/journal.pgen.1004071 ISSN 1553-7390.

(2013) Esperanto for histones : CENP-A, not CenH3, is the centromeric histone H3 variant. Chromosome Research, Volume 21 (Number 2). pp. 101-106. doi:10.1007/s10577-013-9347-y ISSN 0967-3849.

Ehrt, Sabine, Raju, Ravikiran M., Unnikrishnan, Meera, Rubin, Daniel H. F., Krishnamoorthy, Vidhya, Kandror, Olga, Akopian, Tatos N., Goldberg, Alfred L. and Rubin, Eric J. (2012) Mycobacterium tuberculosis ClpP1 and ClpP2 function together in protein degradation and are required for viability in vitro and during infection. PLoS Pathogens, Volume 8 (Number 2). Article number e1002511. doi:10.1371/journal.ppat.1002511 ISSN 1553-7374.

Holmes, Ian, Harris, Keith and Quince, Christopher (2012) Dirichlet multinomial mixtures : generative models for microbial metagenomics. PLoS One, Volume 7 (Number 2). Article number e30126. doi:10.1371/journal.pone.0030126 ISSN 1932-6203.

Kaverina, Irina and Straube, Anne (2011) Regulation of cell migration by dynamic microtubules. Seminars in Cell & Developmental Biology, Volume 22 (Number 9). pp. 968-974. doi:10.1016/j.semcdb.2011.09.017 ISSN 1084-9521.

Sargaeva, Nadezda P., Lin, Cheng and O’Connor, Peter B. (2011) Differentiating N-terminal aspartic and isoaspartic acid residues in peptides. Analytical Chemistry, Vol.83 (No.17). pp. 6675-6682. doi:10.1021/ac201223d ISSN 0003-2700.

Arabidopsis Interactome Mapping Consortium (Including:

). (2011) Evidence for network evolution in an Arabidopsis interactome map. Science, Vol.333 (No.6042). pp. 601-607. doi:10.1126/science.1203877 ISSN 0036-8075.

Sargaeva, Nadezda P., Lin, Cheng and O’Connor, Peter B. (2011) Unusual fragmentation of β-Linked peptides by ExD tandem mass spectrometry. Journal of The American Society for Mass Spectrometry, Vol.22 (No.3). pp. 480-491. doi:10.1007/s13361-010-0049-9 ISSN 1044-0305.

Li, Xiaojuan, Huang, Yiqun, O’Connor, Peter B. and Lin, Cheng (2011) Structural heterogeneity of doubly-charged peptide b-Ions. Journal of The American Society for Mass Spectrometry, Vol.22 (No.2). pp. 245-254. doi:10.1007/s13361-010-0036-1 ISSN 1044-0305.

Girija, Umakhanth Venkatraman, Mitchell, Daniel A., Roscher, Silke and Wallis, Russell (2011) Carbohydrate recognition and complement activation by rat ficolin-B. European Journal of Immunology, Volume 41 (Number 1). pp. 214-223. doi:10.1002/eji.201040612 ISSN 0014-2980.

Aizikov, Konstantin, Smith, Donald F., Chargin, David A., Ivanov, Sergei, Lin, Tzu-Yung, Heeren, Ron M. A. and O’Connor, Peter B. (2011) Vacuum compatible sample positioning device for matrix assisted laser desorption∕ionization Fourier transform ion cyclotron resonance mass spectrometry imaging. Review of Scientific Instruments, Vol.82 (No.5). Article: 054102. doi:10.1063/1.3594099 ISSN 0034-6748.

Li, Xiaojuan, Lin, Cheng and O'Connor, Peter B. (2010) Glutamine deamidation : differentiation of glutamic acid and gamma-Glutamic acid in peptides by electron capture dissociation. Analytical Chemistry, Vol.82 (No.9). pp. 3606-3615. doi:10.1021/ac9028467 ISSN 0003-2700.

Li, Xiaojuan, Lin, Cheng, Han, L. (Liang), Costello, Catherine E. and O'Connor, Peter B. (2010) Charge remote fragmentation in electron capture and electron transfer dissociation. Journal of The American Society for Mass Spectrometry, Vol.21 (No.4). pp. 646-656. doi:10.1016/j.jasms.2010.01.001 ISSN 1044-0305.

Tildesley, Michael J., House, Thomas A., Bruhn, Mark C., Curry, Ross J., O'Neil, Maggie, Allpress, Justine L. E., Smith, Gary and Keeling, Matthew James (2010) Impact of spatial clustering on disease transmission and optimal control. Proceedings of the National Academy of Sciences of the United States of America, Vol.107 (No.3). pp. 1041-1046. doi:10.1073/pnas.0909047107 ISSN 0027-8424.

Sargaeva, Nadezda P., Lin, Cheng and O'Connor, Peter B. (2009) Identification of aspartic and isoaspartic acid residues in amyloid beta peptides, including A beta 1-42, using electron-ion reactions. Analytical Chemistry, Vol.81 (No.23). pp. 9778-9786. doi:10.1021/ac901677t ISSN 0003-2700.

Mathur, Raman and O'Connor, Peter B. (2009) Artifacts in fourier transform mass spectrometry. Rapid Communications in Mass Spectrometry, Vol.23 (No.4). pp. 523-529. doi:10.1002/rcm.3904 ISSN 09514198.

Mathur, Raman, Knepper, R. W. and O'Connor, Peter B. (2008) A low-noise broadband cryogenic preamplifier operated in a high-field superconducting magnet. IEEE Transactions on Applied Superconductivity, Vol.18 (No.4). pp. 1781-1789. doi:10.1109/TASC.2008.2007272 ISSN 1051-8223.

Lin, Cheng, Cournoyer, Jason J. and O'Connor, Peter B. (2008) Probing the gas-phase folding kinetics of peptide ions by IR activated DR-ECD. Journal of The American Society for Mass Spectrometry, Vol.19 (No.6). pp. 780-789. doi:10.1016/j.jasms.2008.01.001 ISSN 1044-0305.

Li, Xiaojuan, Cournoyer, Jason J., Lin, Cheng and O'Connor, Peter B. (2008) Use of 18O Labels to monitor deamidation during protein and peptide sample processing. Journal of The American Society for Mass Spectrometry, Vol.19 (No.6). pp. 855-864. doi:10.1016/j.jasms.2008.02.011 ISSN 1044-0305.

Li, X., Cournoya, J., Lin, C. and O'Connor, Peter B. (2008) The effect of fixed charge modifications on electron capture dissociation. Journal of The American Society for Mass Spectrometry, Vol.19 (No.10). pp. 1514-1526. doi:10.1016/j.jasms.2008.06.014 ISSN 1044-0305.