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Number of items: 65.
Journal Article
Abdelsamea, Mohammed M. (2016) A semi-automated system based on level sets and invariant spatial interrelation shape features for Caenorhabditis elegans phenotypes. Journal of Visual Communication and Image Representation, 41 . pp. 314-323. doi:10.1016/j.jvcir.2016.10.011 ISSN 1047-3203.
Alam, Mohammad T., Zelezniak, Aleksej, MΓΌlleder, Michael, Shliaha, Pavel, Schwarz, Roland, Capuano, Floriana, Vowinckel, Jakob, Radmaneshfar, Elahe, KrΓΌger, Antje, Calvani, Enrica, Michel, Steve, BΓΆrno, Stefan, Christen, Stefan, Patil, Kiran Raosaheb, Timmermann, Bernd, Lilley, Kathryn S. and Ralser, Markus (2016) The metabolic background is a global player in Saccharomyces gene expression epistasis. Nature microbiology, 1 . 15030. ISSN 2058-5276.
Arduini, Arduino, Bonomini, Mario and Zammit, Victor A. (2016) Defining the potential antidepressant mode of action of acetyl-L-carnitine. Proceedings of the National Academy of Sciences of the United States of America, 113 (39). E5698-E5699. doi:10.1073/pnas.1612025113 ISSN 0027-8424.
Barber, T. M. (2016) Diabesity : pathogenesis and novel preventive and management strategies. Journal of Diabetes Nursing, 20 (2). pp. 50-55. ISSN 1368-1109.
Barber, T. M., Dimitriadis, Georgios K., Andreou, A. and Franks, S. (2016) Polycystic ovary syndrome : insight into pathogenesis and a common association with insulin resistance. Clinical Medicine, 16 (3). pp. 262-266. doi:10.7861/clinmedicine.16-3-262 ISSN 1470-2118.
Barber, T. M. and Stephen, Franks (2016) Genetics of polycystic ovary syndrome. eLS . pp. 1-7. doi:10.1002/9780470015902.a0026529
Bishehsari, Faraz, LΓ©vi, Francis A., Turek, Fred W. and Keshavarzian, Ali (2016) Circadian rhythms in gastrointestinal health and diseases. Gastroenterology, 151 (3). e1-e5. doi:10.1053/j.gastro.2016.07.036 ISSN 0016-5085.
Brosens, Ivo, Gargett, C. E., Guo, S.-W., Puttemans, P., Gordts, S., Brosens, Jan J. and Benagiano, G. (2016) Origins and progression of adolescent endometriosis. Reproductive Sciences, 23 (10). pp. 1282-1288. doi:10.1177/1933719116637919 ISSN 1933-7191.
Castagnola, AnaΓ―s, Mulley, Geraldine, Davis, Nathaniel J. L. K., Waterfield, Nicholas R. and Stock, S Patricia (2016) Transcript abundance of Photorhabdus Insect-Related (Pir) toxin in Manduca sexta and Galleria mellonella infections. Toxins, 8 (10). 287. doi:10.3390/toxins8100287 ISSN 2072-6651.
Cheffings, Thomas H., Burroughs, Nigel John and Balasubramanian, Mohan K. (2016) Actomyosin ring formation and tension generation in eukaryotic cytokinesis. Current Biology, 26 (15). R719-R737. doi:10.1016/j.cub.2016.06.071 ISSN 0960-9822.
Cho, Si-Kyung, Kim, Dong-Hoon, Quince, Christopher, Im, Wan-Taek, Oh, Sae-Eun and Shin, Seung Gu (2016) Low-strength ultrasonication positively affects methanogenic granules toward higher AD performance : implications from microbial community shift. Ultrasonics Sonochemistry, 32 . pp. 198-203. doi:10.1016/j.ultsonch.2016.03.010 ISSN 1350-4177.
Dean, Samuel, Moreira-Leite, Flavia, Varga, Vladimir and Gull, Keith (2016) Cilium transition zone proteome reveals compartmentalization and differential dynamics of ciliopathy complexes. Proceedings of the National Academy of Sciences of the United States of America, 113 (35). E5135-E5143. doi:10.1073/pnas.1604258113 ISSN 0027-8424.
Dimitriadis, Georgios K. and Barber, T. M. (2016) Obesity-related metabolic and reproductive dysfunction : variations between the sexes. Expert Review of Endocrinology & Metabolism, 11 (5). pp. 387-393. doi:10.1080/17446651.2016.1220301 ISSN 1744-6651.
Drechsler, Hauke and McAinsh, Andrew D. (2016) Kinesin-12 motors cooperate to suppress microtubule catastrophes and drive the formation of parallel microtubule bundles. Proceedings of the National Academy of Sciences of the United States of America, 113 (12). E1635-E1644. doi:10.1073/pnas.1516370113 ISSN 0027-8424.
Dyer, Philip, Dean, Samuel and Sunter, Jack (2016) High-throughput Gene Tagging in Trypanosoma brucei. Journal of Visualized Experiments (114). doi:10.3791/54342 ISSN 1940-087X.
DβAmore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G., Gregory, Richard, Darby, Alistair C., Shakya, Migun, Podar, Mircea, Quince, Christopher and Hall, Neil (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17 (1). doi:10.1186/s12864-015-2194-9 ISSN 1471-2164.
Gerasimidis, Konstantinos, Bertz, Martin, Quince, Christopher, Brunner, Katja, Bruce, Alanna, Combet, Emilie, Calus, Szymon, Loman, Nick and Ijaz, Umer Zeeshan (2016) The effect of DNA extraction methodology on gut microbiota research applications. BMC Research Notes, 9 (1). 365. doi:10.1186/s13104-016-2171-7 ISSN 1756-0500.
Gonçalves Athanasio, Camila, Chipman, James K., Viant, Mark R. and Mirbahai, Leda (2016) Optimisation of DNA extraction from the crustacean Daphnia. PeerJ, 4 . e2004. doi:10.7717/peerj.2004 ISSN 2167-8359.
Gostner, Johanna M., Zeisler, Johannes, Alam, Mohammad T., Gruber, Peter, Fuchs, Dietmar, Becker, Kathrin, Neubert, Kerstin, Kleinhappl, Markus, Martini, Stefan and Γberall, Florian (2016) Cellular reactions to long-term volatile organic compound (VOC) exposures. Scientific Reports, 6 . 37842. ISSN 2045-2322.
Gregor, Ivan, DrΓΆge, Johannes, Schirmer, Melanie, Quince, Christopher and McHardy, Alice C. (2016) PhyloPythiaS+ : a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes. PeerJ, 4 . e1603. doi:10.7717/peerj.1603 ISSN 2167-8359.
Haig, Sarah-Jane, Gauchotte-Lindsay, Caroline, Collins, Gavin and Quince, Christopher (2016) Bioaugmentation mitigates the impact of estrogen on coliform-grazing protozoa in slow sand filters. Environmental Science & Technology, 50 (6). pp. 3101-3110. doi:10.1021/acs.est.5b05027 ISSN 0013-936X.
Hervas-Aguilar, Maria-America and Millar, Jonathan B. A. (2016) Mph1/MPS1 checks in at the kinetochore. Cell Cycle, 15 (10). pp. 1313-1314. doi:10.1080/15384101.2016.1159888 ISSN 1538-4101.
Huang, Junqi, Chew, Ting Gang, Gu, Ying, Palani, Saravanan, Kamnev, Anton, Martin, Douglas S., Carter, Nicholas J., Cross, R. A., Oliferenko, Snezhana and Balasubramanian, Mohan K. (2016) Curvature-induced expulsion of actomyosin bundles during cytokinetic ring contraction. eLife, 5 . e21383. doi:10.7554/eLife.21383 ISSN 2050-084X.
Jiang, Feng, Wang, Xia, Wang, Bei, Chen, Lihong, Zhao, Zhendong, Waterfield, Nicholas R., Yang, Guowei and Jin, Qi (2016) The pseudomonas aeruginosa Type VI secretion PGAP1-like effector induces host autophagy by activating endoplasmic reticulum stress. Cell Reports, 16 (6). pp. 1502-1509. doi:10.1016/j.celrep.2016.07.012 ISSN 2211-1247.
Jiang, Shimin, Narita, Akihiro, Popp, David, Ghoshdastider, Umesh, Lee, Lin Jie, Srinivasan, Ramanujam, Balasubramanian, Mohan K., Oda, Toshiro, Koh, Fujiet, Larsson, MΓ₯rten and Robinson, Robert C. (2016) Novel actin filaments from Bacillus thuringiensisform nanotubules for plasmid DNA segregation. Proceedings of the National Academy of Sciences of the United States of America, 113 (9). E1200-E1205. doi:10.1073/pnas.1600129113 ISSN 0027-8424.
(2016) Oxidized arachidonic and adrenic PEs navigate cells to ferroptosis. Nature Chemical Biology, 13 (1). pp. 81-90. doi:10.1038/nchembio.2238 ISSN 1552-4450.
Kershaw, Jane and Royrvik, E. C. (2016) The βPeople of the British Islesβ project and Viking settlement in England. Antiquity, 90 (354). pp. 1670-1680. doi:10.15184/aqy.2016.193 ISSN 1745-1744.
Kim, Bo-Mi, Mirbahai, Leda, Mally, Angela, Kevin Chipman, J., Rhee, Jae-Sung and Lee, Jae-Seong (2016) Correlation between the DNA methyltransferase (Dnmt) gene family and genome-wide 5-methylcytosine (5mC) in rotifer, copepod, and fish. Genes & Genomics, 38 (1). pp. 13-23. doi:10.1007/s13258-015-0333-y ISSN 1976-9571.
Mora-Santos, Maria, Hervas-Aguilar, Maria-America, Sewart, Katharina, Lancaster, Theresa C., Meadows, John C. and Millar, Jonathan B. A. (2016) Bub3-Bub1 binding to Spc7/KNL1 toggles the spindle checkpoint switch by licensing the interaction of Bub1 with Mad1-Mad2. Current Biology, 26 (19). pp. 2642-2650. doi:10.1016/j.cub.2016.07.040 ISSN 0960-9822.
Morris, Mhairi A., Dawson, Christopher W., Laverick, Louise, Davis, Alexandra M., Dudman, Joe P. R., Raveenthiraraj, Sathuwarman, Ahmad, Zeeshan, Yap, Lee-Fah and Young, Lawrence S. (2016) The Epstein-Barr virus encoded LMP1 oncoprotein modulates cell adhesion via regulation of activin A/TGFΞ² and Ξ²1 integrin signalling. Scientific Reports, 6 . 19533. doi:10.1038/srep19533 ISSN 2045-2322.
Muter, Joanne, Brighton, Paul, Lucas, Emma S., Lacey, Lauren, Shmygol, Anatoly, Quenby, Siobhan, Blanks, Andrew M. and Brosens, Jan J. (2016) Progesterone-dependent induction of phospholipase C-related catalytically inactive protein 1 (PRIP-1) in decidualizing human endometrial stromal cells. Endocrinology, 157 (7). pp. 2883-2893. doi:10.1210/en.2015-1914 ISSN 0013-7227.
MΓΌlleder, Michael, Calvani, Enrica, Alam, Mohammad T., Wang, Richard Kangda, Eckerstorfer, Florian, Zelezniak, Aleksej and Ralser, Markus (2016) Functional metabolomics describes the yeast biosynthetic regulome. Cell, 167 (2). 553-565.e12. ISSN 1097-4172.
Nawathe, Aamod R., Christian, Mark, Kim, Sung Hye, Johnson, Mark, Savvidou, Makrina D. and Terzidou, Vasso (2016) Insulin-like growth factor axis in pregnancies affected by fetal growth disorders. Clinical Epigenetics, 8 (1). 11. doi:10.1186/s13148-016-0178-5 ISSN 1868-7075.
Paglia, Giuseppe, Stocchero, Matteo, Cacciatore, Stefano, Lai, Steven, Angel, Peggi, Alam, Mohammad T., Keller, Markus, Ralser, Markus and Astarita, Giuseppe (2016) Unbiased metabolomic investigation of Alzheimer's disease brain points to dysregulation of mitochondrial aspartate metabolism. Journal of Proteome Research, 15 (2). pp. 608-618. ISSN 1535-3893.
Patel, Jessica, Tan, S. L., Hartshorne, Geraldine M. and McAinsh, Andrew D. (2016) Unique geometry of sister kinetochores in human oocytes during meiosis I may explain maternal age-associated increases in chromosomal abnormalities. Biology Open, 5 (2). pp. 178-184. doi:10.1242/bio.016394 ISSN 2046-6390.
Pisani, D. F., Beranger, G. E., Corinus, A., Giroud, M., Ghandour, R. A., Altirriba, J., Chambard, J.-C., Mazure, N. M., Bendahhou, S., Duranton, C., Michiels, J.-F., Frontini, A., Rohner-Jeanrenaud, F., Cinti, S., Christian, Mark, Barhanin, J. and Amri, E.-Z. (2016) The K+ channel TASK1 modulates -adrenergic response in brown adipose tissue through the mineralocorticoid receptor pathway. The FASEB Journal, 30 (2). pp. 909-922. doi:10.1096/fj.15-277475 ISSN 0892-6638.
Ploss, Tina N., Reilman, Ewoud, Monteferrante, Carmine G., Denham, Emma, Piersma, Sjouke, Lingner, Anja, VehmaanperΓ€, Jari, Lorenz, Patrick and van Dijl, Jan Maarten (2016) Homogeneity and heterogeneity in amylase production by Bacillus subtilis under different growth conditions. Microbial Cell Factories, 15 (1). doi:10.1186/s12934-016-0455-1 ISSN 1475-2859.
Puxty, Richard J., Millard, Andrew D., Evans, David J. and Scanlan, David J. (2016) Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology, 26 (12). pp. 1585-1589. doi:10.1016/j.cub.2016.04.036 ISSN 0960-9822.
Ray, Jessica L., Althammer, Julia, Skaar, Katrine S., Simonelli, Paolo, Larsen, Aud, Stoecker, Diane, Sazhin, Andrey, Ijaz, Umer Z., Quince, Christopher, Nejstgaard, Jens C., Frischer, Marc, Pohnert, Georg and Troedsson, Christofer (2016) Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities. Molecular Ecology, 25 (21). pp. 5585-5602. doi:10.1111/mec.13844 ISSN 0962-1083.
Robb, Nicole C., te Velthuis, Aartjan J. W., Wieneke, Ralph, TampΓ©, Robert, Cordes, Thorben, Fodor, Ervin and Kapanidis, Achillefs N. (2016) Single-molecule FRET reveals the pre-initiation and initiation conformations of influenza virus promoter RNA. Nucleic Acids Research, 44 (21). pp. 10304-10315. doi:10.1093/nar/gkw884 ISSN 0305-1048.
Rognes, TorbjΓΈrn, Flouri, TomΓ‘Ε‘, Nichols, Ben, Quince, Christopher and MahΓ©, FrΓ©dΓ©ric (2016) VSEARCH : a versatile open source tool for metagenomics. PeerJ, 4 . e2584. doi:10.7717/peerj.2584 ISSN 2167-8359.
Royrvik, E. C., Burgstaller, J. P. and Johnston, I. G. (2016) mtDNA diversity in human populations highlights the merit of haplotype matching in gene therapies. Molecular Human Reproduction, 22 (11). pp. 809-817. doi:10.1093/molehr/gaw062 ISSN 1360-9947.
Salker, Madhuri S., Hosseinzadeh, Zohreh, Alowayed, Nour, Zeng, Ni, Umbach, Anja T., Webster, Zoe, Singh, Yogesh, Brosens, Jan J. and Lang, Florian (2016) LEFTYA activates the epithelial Na+ Channel (ENaC) in endometrial cells via serum and glucocorticoid inducible kinase SGK1. Cellular Physiology and Biochemistry, 39 (4). pp. 1295-1306. doi:10.1159/000447834 ISSN 1015-8987.
Sanghera, Narinder, Anderson, Alexander, Nuar, Nick, Xie, Can, Mitchell, Daniel A. and Klein-Seetharaman, Judith (2016) Insulin biosensor development : a case study. International Journal of Parallel, Emergent and Distributed Systems, 32 (1). pp. 119-138. doi:10.1080/17445760.2016.1158817 ISSN 1744-5760.
Sinclair, Lucas, Ijaz, Umer Z., Jensen, Lars Juhl, Coolen, Marco J.L., Gubry-Rangin, Cecile, ChroΕΓ‘kovΓ‘, Alica, Oulas, Anastasis, Pavloudi, Christina, Schnetzer, Julia, Weimann, Aaron, Ijaz, Ali, Eiler, Alexander, Quince, Christopher and Pafilis, Evangelos (2016) Seqenv : linking sequences to environments through text mining. PeerJ, 4 . e2690. doi:10.7717/peerj.2690 ISSN 2167-8359.
Smith, Chris A., McAinsh, Andrew D. and Burroughs, Nigel John (2016) Human kinetochores are swivel joints that mediate microtubule attachments. eLife, 5 . e16159. doi:10.7554/eLife.16159 ISSN 2050-084X.
Torondel, Belen, Ensink, Jeroen H.J., Gundogdu, Ozan, Ijaz, Umer Zeeshan, Parkhill, Julian, Abdelahi, Faraji, Nguyen, Viet-Anh, Sudgen, Steven, Gibson, Walter, Walker, Alan W. and Quince, Christopher (2016) Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines. Microbial Biotechnology, 9 (2). pp. 209-223. doi:10.1111/1751-7915.12334 ISSN 1751-7907.
Van De Pette, Matthew, Tunster, Simon J., McNamara, Grainne I., Shelkovnikova, Tatyana, Millership, Steven, Benson, Lindsay, Peirson, Stuart, Christian, Mark, Vidal-Puig, Antonio and John, Rosalind M. (2016) Cdkn1c boosts the development of brown adipose tissue in a murine model of Silver Russell syndrome. PLoS Genetics, 12 (3). e1005916. doi:10.1371/journal.pgen.1005916 ISSN 1553-7390.
Woods, Kristina N., Pfeffer, JΓΌrgen, Dutta, Arpana and Klein-Seetharaman, Judith (2016) Vibrational resonance, allostery, and activation in rhodopsin-like G protein-coupled receptors. Scientific Reports, 6 . 37290. doi:10.1038/srep37290 ISSN 2045-2322.
Zammit, Victor A. and Arduini, Arduino (2016) Acetate trafficking in the heart : carnitine acyltransferases matter. Physiological Reports, 4 (19). e12997. doi:10.14814/phy2.12997 ISSN 2051-817X.
Book Item
Barber, T. M., Dimitriadis, Georgios K. and Franks, S. (2016) Polycystic ovary syndrome and obesity. In: Ahmad, Shamim I. and Imam, Syed Khalid, (eds.) Obesity : a practical guide. Springer, pp. 199-210. ISBN 9783319198200
De Piccoli, Giacomo and Gambus, Agnieszka (2016) Role of small-molecule modifiers in replication initiation. In: Kaplan, D. L., (ed.) The Initiation of DNA Replication in Eukaryotes. Cham, Switzerland: Springer International Publishing, pp. 343-370. ISBN 9783319246963
Dimitriadis, Georgios K. (2016) Polycystic ovary syndrome and obesity. In: Ahmad, Shamim I. and Khalid Imam, Syed, (eds.) Obesity : a practical guide. Cham : Springer . ISBN 9783319198217
Dimitriadis, Georgios K. and Kaltsas, G. (2016) Tumour detection in syndromic NET (carcinoid syndrome). In: Colao W. , A. and Faggiano, A. and de Herder, W., (eds.) Neuroendocrine Tumors in Real Life. Cham, Switzerland: Springer , pp. 161-169. ISBN 9783319590226
Huang, Junqi, Mishra, Mithilesh, Palani, Saravanan, Chew, Ting Gang and Balasubramanian, Mohan K. (2016) Isolation of Cytokinetic actomyosin rings from Saccharomyces cerevisiae and Schizosaccharomyces pombe. In: Yeast Cytokinesis : Methods and Protocols. Methods in Molecular Biology, 1369 . Springer New York, pp. 125-136. ISBN 9781493931446
Jones, Oliver A. H., Lear, Gavin, Welji, Aalim M., Collins, Gavin and Quince, Christopher (2016) Community metabolomics in environmental microbiology. In: Beale, D. and Kouremenos, K. and Palombo, E., (eds.) Microbial Metabolomics. Cham: Springer, pp. 199-224. ISBN 9783319463247
Kshirsagar, Meghana, Carbonell, Jaime G., Klein-Seetharaman, Judith and Murugesan, Keerthiram (2016) Multitask matrix completion for learning protein interactions across diseases. In: Singh, Mona, (ed.) Research in Computational Molecular Biology : 20th Annual Conference, RECOMB 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings. Lecture Notes in Computer Science, 9649 . Springer International Publishing, pp. 53-64. ISBN 9783319319575
Conference Item
Azharian, Sahar, Neal, Matthew, Kyrou, Iannos, Piya, Milan K., Kumar, Sudhesh, Covington, James A., McTernan, P. G. (Philip G.), Vrbikova, J., Hainer, V., Sramkova, P. and Fried, M. (2016) Volatile organic compounds : a potential biomarker for prediction of hypertension. In: Society for Endocrinology BES 2016, Brighton, UK, 07-09 Nov 2016 . Published in: Endocrine Abstracts, 44 doi:10.1530/endoabs.44.P110 ISSN 1479-6848.
Svolos, V., Hansen, R., Hughes, K., Ijaz, U. Z., Quince, Christopher, Gaya, D., Russell, R. and Gersimidis, K. (2016) OP018. The impact of βCrohnβs Disease-TReatment-with-EATingβ diet (CD-TREAT diet) and exclusive enteral nutrition on healthy gut bacteria metabolism. In: UNSPECIFIED. Published in: Journal of Crohn's and Colitis, 10 (supplement 1). S14.2-S15. doi:10.1093/ecco-jcc/jjw019.017 ISSN 1873-9946.
Working or Discussion Paper
Bowen, Emma J., Parsons, Todd L., Curtis, Thomas P., Plotkin, Joshua B. and Quince, Christopher (2016) Integrating theory and experiment to explain the breakdown of population synchrony in a complex microbial community. Working Paper. Coventry, UK : University of Warwick, Warwick Medical School. (Unpublished)
Nichols, Ben and Quince, Christopher (2016) Simera : modelling the PCR process to simulate realistic chimera formation. Working Paper. bioRxiv: Cold Spring Harbour Laboratory. (Unpublished)
Quince, Christopher, Connelly, Stephanie, Raguideau, Sebastien, Alneberg, Johannes, Shin, Seung Gu, Collins, Gavin and Eren, A. Murat (2016) De novo extraction of microbial strains from metagenomes reveals intra-species niche partitioning. Working Paper. bioRxiv: Cold Spring Harbour Laboratory. (Unpublished)
Journal Item
Balasubramanian, Mohan K. (2016) Exploring the diversity of cytokinesis. Seminars in Cell & Developmental Biology, 53 . ISSN 1084-9521 doi:10.1016/j.semcdb.2016.04.003
Digital Scholarly Resource
Barber, T. M. (2016) Obesity and womenβs health - part 1 of 2 : female obesity [The Biomedical & Life Sciences Collection]. [Online]. (https://hstalks.com/bs/3202/). London: Henry Stewart Talks Ltd.
Barber, T. M. (2016) Obesity and womenβs health - part 2 of 2 : polycystic ovary syndrome [The Biomedical & Life Sciences Collection]. [Online]. (https://hstalks.com/bs/3202/). London: Henry Stewart Talks Ltd.