Journal Article

(2016) Taxonomy of the order Mononegavirales : update 2016. Archives of Virology, 161 (8). pp. 2351-2360. doi:10.1007/s00705-016-2880-1

Agoti, Charles N., Kiyuka, Patience K., Kamau, Everlyn, Munywoki, Patrick K., Bett, Anne, van der Hoek, Lia, Kellam, Paul, Nokes, D. James and Cotten, Matthew (2016) Human Rhinovirus B and C genomes from rural coastal Kenya. Genome Announcements, 4 (4). pp. 1-2. e00751. doi:10.1128/genomeA.00751-16

Alberti, Fabrizio (2016) Current trends in natural products research from the CBNP10 Symposium at Warwick. Exchanges: the Warwick Research Journal, 4 (1).

Alcock, Felicity, Stansfeld, Phillip J., Basit, Hajra, Habersetzer, Johann, Baker, Matthew A. B., Palmer, Tracy, Wallace, Mark I. and Berks, Ben C. (2016) Assembling the tat protein translocase. eLife, 5 . e20718. doi:10.7554/eLife.20718

Alford, Justine E., Marongiu, Michela, Watkins, Gemma L. and Anderson, Emma C. (2016) Human immunodeficiency virus type 2 (HIV-2) Gag is trafficked in an AP-3 and AP-5 dependent manner. PLoS One, 11 (7). e0158941. doi:10.1371/journal.pone.0158941

Alguel, Y., Cameron, Alexander, Diallinas, G. and Byrne, B. (2016) Transporter oligomerization : form and function. Biochemical Society Transactions, 44 (6). pp. 1737-1744. doi:10.1042/BST20160217

Alguel, Yilmaz, Amillis, Sotiris, Leung, James, Lambrinidis, George, Capaldi, Stefano, Scull, Nicola J., Craven, Gregory, Iwata, So, Armstrong, Alan, Mikros, Emmanuel, Diallinas, George, Cameron, Alexander and Byrne, Bernadette (2016) Structure of eukaryotic purine/H+ symporter UapA suggests a role for homodimerization in transport activity. Nature Communications, 7 . pp. 1-9. 11336. doi:10.1038/ncomms11336

Allaby, Robin G., Kitchen, James and Fuller, Dorian Q. (2016) Surprisingly low limits of selection in plant domestication. Evolutionary Bioinformatics (2). pp. 41-51. doi:10.4137/EBO.S33495

Ansari, M. Azim and Didelot, Xavier (2016) Bayesian inference of the evolution of a phenotype distribution on a phylogenetic tree. Genetics, 204 (1). pp. 89-98. doi:10.1534/genetics.116.190496

Araújo, Carlos Leonardo de A., Dias, Larissa M., Veras, Adonney A. O., Alves, Jorianne T. C., Cavalcante, Ana Lídia Q., Dowson, Christopher G., Azevedo, Vasco, Ramos, Rommel T. J., Silva, Artur and Carneiro, Adriana R. (2016) Whole-genome sequence of Corynebacterium pseudotuberculosis 262 biovar equi isolated from cow milk. Genome Announcements, 4 (2). e00176. doi:10.1128/genomeA.00176-16

Archer, Nathan, Walsh, Mark, Shahrezaie, Vahid and Hebenstreit, Daniel (2016) Modeling enzyme processivity reveals that RNA-Seq libraries are biased in characteristic and correctable ways. Cell Systems, 3 (5). pp. 467-479. doi:10.1016/j.cels.2016.10.012

Arias Ugarte, Renzo, Devarajan, Deepa, Mushinski, Ryan and Hudnall, Todd W. (2016) Antimony(v) cations for the selective catalytic transformation of aldehydes into symmetric ethers, α,β-unsaturated aldehydes, and 1,3,5-trioxanes. Dalton Transactions, 45 (27). pp. 11150-11161. doi:10.1039/c6dt02121b

Atwan, Zeenah, Wright, Jordan L., Leppard, Keith and Woodman, Andrew (2016) Promyelocytic leukemia protein isoform II inhibits infection by human adenovirus type 5 through effects on HSP70 and the interferon response. Journal of General Virology, 97 . pp. 1955-1967. doi:10.1099/jgv.0.000510

Badescu, George O., Marsh, Andrew, Smith, Timothy R., Thompson, Andrew J. and Napier, R. (Richard) (2016) Kinetic characterisation of a single chain antibody against the Hormone Abscisic Acid : comparison with its parental monoclonal. PLoS One, 11 (3). pp. 1-14. e0152148. doi:10.1371/journal.pone.0152148

Bailey, Andy M., Alberti, Fabrizio, Kilaru, Sreedhar, Collins, Catherine M., de Mattos-Shipley, Kate, Hartley, Amanda J., Hayes, Patrick, Griffin, Alison, Lazarus, Colin M., Cox, Russell J., Willis, Christine L., O’Dwyer, Karen, Spence, David W. and Foster, Gary D. (2016) Identification and manipulation of the pleuromutilin gene cluster from Clitopilus passeckerianus for increased rapid antibiotic production. Scientific Reports, 6 (1). doi:10.1038/srep25202

Bailey, Mark, Srivastava, Anjil, Conti, Lucio, Nelis, Stuart, Zhang, Cunjin, Florance, Hannah, Love, Andrew, Milner, Joel, Napier, R. (Richard), Grant, Murray R. and Sadanandom, Ari (2016) Stability of small ubiquitin-like modifier (SUMO) proteases OVERLY TOLERANT TO SALT1 and -2 modulates salicylic acid signalling and SUMO1/2 conjugation in Arabidopsis thaliana. Journal of Experimental Botany, 67 (1). pp. 353-363. doi:10.1093/jxb/erv468

Barnes, Christopher J., Burns, Caitlin A., van der Gast, Christopher J., McNamara, Niall P. and Bending, G. D. (2016) Spatio-temporal variation of core and satellite arbuscular mycorrhizal fungus communities in Miscanthus giganteus. Frontiers in Microbiology, 7 . 1278. doi:10.3389/fmicb.2016.01278

Barnes, Christopher J., van der Gast, Christopher J., Burns, Caitlin A., McNamara, Niall P. and Bending, G. D. (2016) Temporally variable geographical distance effects contribute to the assembly of root-associated fungal communities. Frontiers in Microbiology, 7 . pp. 1-13. 195. doi:10.3389/fmicb.2016.00195

Baroncelli, Riccardo, Amby, Daniel Buchvaldt, Zapparata, Antonio, Sarrocco, Sabrina, Vannacci, Giovanni, Le Floch, Gaétan, Harrison, Richard J., Holub, E. B., Sukno, Serenella A., Sreenivasaprasad, Surapareddy and Thon, Michael R. (2016) Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum. BMC Genomics, 17 (1). 555. doi:10.1186/s12864-016-2917-6

Bassel, George (2016) To grow or not to grow? Trends in Plant Science, 21 (6). pp. 498-505. doi:10.1016/j.tplants.2016.02.001

Bassel, George and Smith, Richard S. (2016) Quantifying morphogenesis in plants in 4D. Current Opinion in Plant Biology, 29 . pp. 87-94. doi:10.1016/j.pbi.2015.11.005

(2016) Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis. The Plant Cell, 28 (2). pp. 345-366. doi:10.1105/tpc.15.00910

(2016) Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nature Communications, 7 . 10165. doi:10.1038/ncomms10165

Bhandare, Amol M., Kapoor, K., Pilowsky, P. M. and Farnham, Melissa M. J. (2016) Seizure-induced sympathoexcitation is caused by activation of glutamatergic receptors in RVLM that also causes proarrhythmogenic changes mediated by PACAP and microglia in rats. Journal of Neuroscience, 36 (2). pp. 506-517.

Bhandare, Amol M., Kapoor, Komal, Farnham, Melissa M. J. and Pilowsky, Paul M. (2016) Microglia PACAP and glutamate : friends or foes in seizure-induced autonomic dysfunction and SUDEP? Respiratory Physiology & Neurobiology, 226 . pp. 39-50.

Bird, Alex D., Wall, Mark J. and Richardson, Magnus J. E. (2016) Bayesian inference of synaptic quantal parameters from correlated vesicle release. Frontiers in Computational Neuroscience, 10 . 116. doi:10.3389/fncom.2016.00116

Bjorness, T. E., Dale, Nicholas, Mettlach, G., Sonneborn, A., Sahin, B., Fienberg, A. A., Yanagisawa, M., Bibb, J. A. and Greene, R. W. (2016) An adenosine-mediated Glial-Neuronal circuit for homeostatic sleep. Journal of Neuroscience, 36 (13). pp. 3709-3721. doi:10.1523/JNEUROSCI.3906-15.2016

Bolivar, Juan H., Muñoz-García, Juan C., Castro-Dopico, Tomas, Dijkman, Patricia M., Stansfeld, Phillip J. and Watts, Anthony (2016) Interaction of lipids with the neurotensin receptor 1. Biochimica et Biophysica Acta (BBA) - Biomembranes, 1858 (6). pp. 1278-1287. doi:10.1016/j.bbamem.2016.02.032

Boltze, Johannes, Wagner, Daniel-Christoph, Henninger, Nils, Plesnila, Nikolaus and Ayata, Cenk (2016) Phase III preclinical trials in translational stroke research : community response on framework and guidelines. Translational Stroke Research, 7 (4). pp. 241-247. doi:10.1007/s12975-016-0474-6

Botta, Federico and Del Genio, Charo I. (2016) Finding network communities using modularity density. Journal of Statistical Mechanics : Theory and Experiment, 2016 (12). 123402. doi:10.1088/1742-5468/2016/12/123402

Brand, Samuel, Rock, Kat S. and Keeling, Matthew James (2016) The interaction between vector life history and short vector life in vector-borne disease transmission and control. PLoS Computational Biology, 12 (4). e1004837. doi:10.1371/journal.pcbi.1004837

Breen, Susan, Williams, Simon J., Winterberg, Britta, Kobe, Bostjan and Solomon, Peter S. (2016) Wheat PR-1 proteins are targeted by necrotrophic pathogen effector proteins. The Plant Journal, 88 (1). pp. 13-25. doi:10.1111/tpj.13228

Breeze, Emily, Dzimitrowicz, Natasha, Kriechbaumer, Verena, Brooks, Rhiannon, Botchway, Stanley W., Brady, Jacob P., Hawes, Chris, Dixon, Ann M., Schnell, Jason R., Fricker, Mark D. and Frigerio, Lorenzo (2016) A C-terminal amphipathic helix is necessary for the in-vivo tubule-shaping function of plant reticulon. Proceedings of the National Academy of Sciences of the United States of America, 113 (39). pp. 10902-10907. doi:10.1073/pnas.1605434113

Bridges, Rebecca G., Sohn, Sook-Young, Wright, Jordan L., Leppard, Keith and Hearing, Patrick (2016) The adenovirus E4-ORF3 protein stimulates SUMOylation of general transcription factor TFII-I to direct proteasomal degradation. mBio, 7 (1). e02184-15. doi:10.1128/mBio.02184-15

Brinkert, Katharina, De Causmaecker, Sven, Krieger-Liszkay, Anja, Fantuzzi, Andrea and Rutherford, A. William (2016) Bicarbonate-induced redox tuning in Photosystem II for regulation and protection. Proceedings of the National Academy of Sciences, 113 (43). pp. 12144-12149. doi:10.1073/pnas.1608862113

Brodel, Andreas K., Jaramillo, Alfonso and Isalan, Mark (2016) Engineering orthogonal dual transcription factors for multi-input synthetic promoters. Nature Communications, 7 . 13858 . doi:10.1038/ncomms13858

Brown, Thomas, Didelot, Xavier, Maio, Nicola De and Wilson, Daniel J. (2016) SimBac : simulation of whole bacterial genomes with homologous recombination. Microbial Genomics, 2 (1). doi:10.1099/mgen.0.000044

Bubendorfer, Sebastian, Krebes, Juliane, Yang, Ines, Hage, Elias, Schulz, Thomas F., Bahlawane, Christelle, Didelot, Xavier and Suerbaum, Sebastian (2016) Genome-wide analysis of chromosomal import patterns after natural transformation of Helicobacter pylori. Nature Communications, 7 . 11995. doi:10.1038/ncomms11995

Buckley, James, Kilbride, Elizabeth, Cevik, Volkan, Vicente, Joana G., Holub, E. B. and Mable, Barbara K. (2016) R-gene variation across Arabidopsis lyrata subspecies : effects of population structure, selection and mating system. BMC Evolutionary Biology, 16 (1). 93. doi:10.1186/s12862-016-0665-5

Burgess, Alexandra J., Retkute, Renata, Preston, Simon P., Jensen, Oliver E., Pound, Michael P., Pridmore, Tony P. and Murchie, Erik H. (2016) The 4-dimensional plant : effects of wind-induced canopy movement on light fluctuations and photosynthesis. Frontiers in Plant Science, 7 (1392). doi:10.3389/fpls.2016.01392

(2016) Understanding the transmission dynamics of Leishmania donovani to provide robust evidence for interventions to eliminate visceral leishmaniasis in Bihar, India. Parasites & Vectors, 9 (1). pp. 1-9. 25. doi:10.1186/s13071-016-1309-8

Carpenter, Byron, Nehmé, Rony, Warne, Tony, Leslie, Andrew G. W. and Tate, Christopher G. (2016) Structure of the adenosine A2A receptor bound to an engineered G protein. Nature, 536 (7614). pp. 104-107. doi:10.1038/nature18966

Carpenter, Byron and Tate, Christopher G. (2016) Engineering a minimal G protein to facilitate crystallisation of G protein-coupled receptors in their active conformation. Protein Engineering Design and Selection, 29 (12). pp. 583-594. doi:10.1093/protein/gzw049

Cavallaro, Massimo and Harris, Rosemary J. (2016) A framework for the direct evaluation of large deviations in non-Markovian processes. Journal of Physics A: Mathematical and Theoretical, 49 (47). 47LT02. doi:10.1088/1751-8113/49/47/47LT02

Chapouthier, Georges, Panti-May, Jesús A., Carvalho-Pereira, Ticiana S. A., Serrano, Soledad, Pedra, Gabriel G., Taylor, Josh, Pertile, Arsinoê C., Minter, Amanda, Airam, Vladimir, Carvalho, Mayara, Júnior, Nivison N., Rodrigues, Gorete, Reis, Mitermayer G., Ko, Albert I., Childs, James E., Begon, Mike and Costa, Federico (2016) A two-year ecological study of Norway rats (Rattus norvegicus) in a Brazilian urban slum. PLoS One, 11 (3). e0152511. doi:10.1371/journal.pone.0152511

Chen, Jing, Dick, Richard, Lin, Jih-Gaw and Gu, Ji-Dong (2016) Current advances in molecular methods for detection of nitrite-dependent anaerobic methane oxidizing bacteria in natural environments. Applied Microbiology and Biotechnology, 100 (23). pp. 9845-9860. doi:10.1007/s00253-016-7853-5

Cizmeci, Deniz, Dempster, Emma L., Champion, Olivia L., Wagley, Sariqa, Akman, Ozgur E., Prior, Joann L., Soyer, Orkun S., Mill, Jonathan and Titball, Richard W. (2016) Mapping epigenetic changes to the host cell genome induced by Burkholderia pseudomallei reveals pathogen-specific and pathogen-generic signatures of infection. Scientific Reports, 6 . 30861. doi:10.1038/srep30861

Clark, Corinna C. A., Crump, Ron E., KilBride, Amy L. and Green, Laura E. (2016) Farm membership of voluntary welfare schemes results in better compliance with animal welfare legislation in Great Britain. Animal Welfare, 25 (4). pp. 461-469. doi:10.7120/09627286.25.4.461

Cleary, David W., Bishop, Alistair H., Zhang, Lihong, Topp, Edward, Wellington, E. M. H., Gaze, William H. and Smalla, Kornelia (2016) Long-term antibiotic exposure in soil is associated with changes in microbial community structure and prevalence of class 1 integrons. FEMS Microbiology Ecology, 92 (10). fiw159. doi:10.1093/femsec/fiw159

Coincon, Mathieu, Uzdavinys, Povilas, Nji, Emmanuel, Dotson, David L., Winkelmann, Iven, Abdul-Hussein, Saba, Cameron, Alexander, Beckstein, Oliver and Drew, David (2016) Crystal structures reveal the molecular basis of ion translocation in sodium/proton antiporters. Nature Structural & Molecular Biology, 23 (3). pp. 248-255. doi:10.1038/nsmb.3164

Cooper, Selin, Huntley, S. J. (Selene J.), Crump, Ron E., Lovatt, Fiona and Green, Laura E. (2016) A cross-sectional study of 329 farms in England to identify risk factors for ovine clinical mastitis. Preventive Veterinary Medicine, 125 . pp. 89-98. doi:10.1016/j.prevetmed.2016.01.012

Couto, Daniel, Niebergall, Roda, Liang, Xiangxiu, Bücherl, Christoph A., Sklenar, Jan, Macho, Alberto P., Ntoukakis, Vardis, Derbyshire, Paul, Altenbach, Denise, Maclean, Dan, Robatzek, Silke, Uhrig, Joachim, Menke, Frank, Zhou, Jian-Min and Zipfel, Cyril (2016) The Arabidopsis protein phosphatase PP2C38 negatively regulates the central immune kinase BIK1. PLoS Pathogens, 12 (8). e1005811. doi:10.1371/journal.ppat.1005811

Crow, Allister, Matsuda, Yuji, Arata, Hiroyuki and Oubrie, Arthur (2016) Structure of the membrane-intrinsic nitric oxide reductase from roseobacter denitrificans. Biochemistry, 55 (23). pp. 3198-3203. doi:10.1021/acs.biochem.6b00332

Cruz, João C. S., Maffioli, Sonia I., Bernasconi, Alice, Brunati, Cristina, Gaspari, Eleonora, Sosio, Margherita, Wellington, E. M. H. and Donadio, Stefano (2016) Allocyclinones, hyperchlorinated angucyclinones from Actinoallomurus. The Journal of Antibiotics . doi:10.1038/ja.2016.62

Cui, Li-li, Kinnunen, Tuure, Boltze, Johannes, Nystedt, Johanna and Jolkkonen, Jukka (2016) Clumping and viability of bone marrow derived mesenchymal stromal cells under different preparation procedures : a flow cytometry-based in vitro study. Stem Cells International, 2016 . pp. 1-8. doi:10.1155/2016/1764938

Cuthbertson, Leah, Rogers, Geraint B., Walker, Alan W., Oliver, Anna, Green, Laura E., Daniels, Thomas W. V., Carroll, Mary P., Parkhill, Julian, Bruce, Kenneth D. and van der Gast, Christopher J. (2016) Respiratory microbiota resistance and resilience to pulmonary exacerbation and subsequent antimicrobial intervention. The ISME Journal, 10 (5). pp. 1081-1091. doi:10.1038/ismej.2015.198

DaSilva, Luis L., Wall, Mark J., Almeida, Luciana P. de , Wauters, Sandrine, Januario, Yunan C., Müller, Jürgen and Corrêa, Sônia A. L. (2016) Arc controls AMPAR endocytosis through a direct interaction with clathrin-adaptor protein 2. eNeuro, 3 (3). 0144-15.2016. doi:10.1523/ENEURO.0144-15.2016

Das, Vidya Nand Ravi, Pandey, Ravindra Nath, Siddiqui, Niyamat Ali, Chapman, Lloyd A. C., Kumar, Vijay, Pandey, Krishna, Matlashewski, Greg and Das, Pradeep (2016) Longitudinal study of transmission in households with visceral leishmaniasis, asymptomatic infections and PKDL in highly endemic villages in Bihar, India. PLoS Neglected Tropical Diseases, 10 (12). e0005196. doi:10.1371/journal.pntd.0005196

De Silva, Dilrini, Peters, Joanna, Cole, Kevin, Cole, Michelle J, Cresswell, Fiona, Dean, Gillian, Dave, Jayshree, Thomas, Daniel Rh, Foster, Kirsty, Waldram, Alison, Wilson, Daniel J, Didelot, Xavier, Grad, Yonatan H, Crook, Derrick W, Peto, Tim E A, Walker, A Sarah, Paul, John and Eyre, David W (2016) Whole-genome sequencing to determine transmission of Neisseria gonorrhoeae : an observational study. The Lancet Infectious Diseases, 16 (11). pp. 1295-1303. doi:10.1016/S1473-3099(16)30157-8

Del Genio, Charo I., Gomez-Gardenes, J., Bonamassa, I. and Boccaletti, S. (2016) Synchronization in networks with multiple interaction layers. Science Advances, 2 (11). e1601679. doi:10.1126/sciadv.1601679

Deol, Arminder, Webster, Joanne P., Walker, Martin, Basáñez, Maria-Gloria, Hollingsworth, T. Déirdre, Fleming, Fiona M., Montresor, Antonio and French, Michael D. (2016) Development and evaluation of a Markov model to predict changes in schistosomiasis prevalence in response to praziquantel treatment : a case study of Schistosoma mansoni in Uganda and Mali. Parasites & Vectors, 9 (1). 543. doi:10.1186/s13071-016-1824-7

Di Fonzo, Martina M. I., Possingham, Hugh P., Probert, William J. M., Bennett, Joseph R., Joseph, Liana N., Tulloch, Ayesha I. T., O'Connor, Shaun, Densem, Jodie and Maloney, Richard F. (2016) Evaluating trade-offs between target persistence levels and numbers of species conserved. Conservation Letters, 9 (1). pp. 51-57. doi:10.1111/conl.12179

Dickins, Alan, Clark, Corinna C. A., Kaler, Jasmeet, Ferguson, Eamonn, O'Kane, Holly and Green, Laura E. (2016) Factors associated with the presence and prevalence of contagious ovine digital dermatitis : a 2013 study of 1136 random English sheep flocks. Preventive Veterinary Medicine, 130 . pp. 86-93. doi:10.1016/j.prevetmed.2016.06.009

Didelot, Xavier (2016) Heroic sacrifice or tragic mistake? Revisiting the Eyam plague, 350 years on. Significance, 13 (5). pp. 20-25. doi:10.1111/j.1740-9713.2016.00961.x

Didelot, Xavier, Dordel, Janina, Whittles, Lilith K., Collins, Caitlin, Bilek, Nicole, Bishop, Cynthia J., White, Peter J., Aanensen, David M., Parkhill, Julian, Bentley, Stephen D., Spratt, Brian G. and Harris, Simon R. (2016) Genomic analysis and comparison of two Gonorrhea outbreaks. mBio, 7 (3). doi:10.1128/mBio.00525-16

Didelot, Xavier, Walker, A. Sarah, Peto, Tim E., Crook, Derrick W. and Wilson, Daniel J. (2016) Within-host evolution of bacterial pathogens. Nature Reviews Microbiology, 14 (3). pp. 150-162. doi:10.1038/nrmicro.2015.13

Diehl, Rita, Ferrara, Fabienne, Müller, Claudia, Dreyer, Antje Y., McLeod, Damian D., Fricke, Stephan and Boltze, Johannes (2016) Immunosuppression for in vivo research : state-of-the-art protocols and experimental approaches. Cellular & Molecular Immunology, 14 (2). pp. 146-179. doi:10.1038/cmi.2016.39

Dowson, Christopher G. and O’Reilly, Steven (2016) DNA methylation in fibrosis. European Journal of Cell Biology, 95 (9). pp. 323-330. doi:10.1016/j.ejcb.2016.06.003

Eldholm, Vegard, Rieux, Adrien, Monteserin, Johana, Lopez, Julia Montana, Palmero, Domingo, Lopez, Beatriz, Ritacco, Viviana, Didelot, Xavier and Balloux, Francois (2016) Impact of HIV co-infection on the evolution and transmission of multidrug-resistant tuberculosis. eLife, 5 . doi:10.7554/eLife.16644

Emmanuel de los Santos, L. C., Meyerowitz, Joseph T., Mayo, Stephen L. and Murray, Richard M. (2016) Engineering transcriptional regulator effector specificity using computational design and in vitrorapid prototyping : developing a vanillin sensor. ACS Synthetic Biology, 5 (4). pp. 287-295. doi:10.1021/acssynbio.5b00090

Emukule, Gideon O. , Mott, Joshua A., Spreeuwenberg, Peter, Viboud, Cecile, Commanday, Alexander, Muthoka, Philip, Munywoki, Patrick K., Nokes, D. James, Velden, Koos van der and Paget, John W. (2016) Influenza activity in Kenya, 2007-2013 : timing, association with climatic factors, and implications for vaccination campaigns. Influenza and Other Respiratory Viruses, 10 (5). pp. 375-385. doi:10.1111/irv.12393

Eyice, Özge and Schäfer, Hendrik (2016) Culture-dependent and culture-independent methods reveal diverse methylotrophic communities in terrestrial environments. Archives of Microbiology, 198 (1). pp. 17-26. doi:10.1007/s00203-015-1160-x

Farrant, Gregory K., Doré, Hugo, Cornejo-Castillo, Francisco M., Partensky, Frédéric, Ratin, Morgane, Ostrowski, Martin, Pitt, Frances D., Wincker, Patrick, Scanlan, David J. , Iudicone, Daniele, Acinas, Silvia G. and Garczarek, Laurence (2016) Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria. Proceedings of the National Academy of Sciences of the United States of America, 113 (24). E3365-E3374. doi:10.1073/pnas.1524865113

Feng, Song, Ollivier, Julien F. and Soyer, Orkun S. (2016) Enzyme sequestration as a tuning point in controlling response dynamics of signalling networks. PLoS Computational Biology, 12 (5). e1004918. doi:10.1371/journal.pcbi.1004918

Feng, Song, Sáez, Meritxell, Wiuf, Carsten, Feliu, Elisenda and Soyer, Orkun S. (2016) Core signalling motif displaying multistability through multi-state enzymes. Journal of The Royal Society Interface, 13 (123). 20160524. doi:10.1098/rsif.2016.0524

Ferrández-Ayela, Almudena , Sánchez-García, Ana Belén, Martinez-Andejar, Cristina, Kevei, Zoltan, Gifford, Miriam L., Thompson, Andrew J., Pérez-Alfocea, Francisco and Pérez-Pérez, José Manuel (2016) Identification of novel stress-responsive biomarkers from gene expression datasets in tomato roots. Functional Plant Biology, 43 (8). pp. 783-796. doi:10.1071/FP15385

Ferrández-Ayela, Almudena , Sánchez-García, Ana Belén, Martínez-Andújar, Cristina, Gifford, Miriam L., Thompson, Andrew J., Pérez-Alfocea, Francisco and Pérez-Pérez, José Manuel (2016) Identification of novel stress-responsive biomarkers from gene expression datasets in tomato roots. Functional Plant Biology, 43 (8). pp. 783-796. doi:10.1071/FP15385

Finch-Savage, William E. and Bassel, George (2016) Seed vigour and crop establishment : extending performance beyond adaptation. Journal of Experimental Botany, 67 (3). pp. 567-591. doi:10.1093/jxb/erv490

Footitt, Steven, Palleschi, Simonetta, Fazio, Eugenio, Palomba, Raffaele, Finch-Savage, William E. and Silvestroni, Leopoldo (2016) Ultra-weak photon emission from the seed coat in response to temperature and humidity - a potential mechanism for environmental signal transduction in the soil seed bank. Photochemistry and Photobiology, 92 (5). pp. 678-687. doi:10.1111/php.12616

Frenguelli, Bruno G. and Wall, Mark J. (2016) Combined electrophysiological and biosensor approaches to study purinergic regulation of epileptiform activity in cortical tissue. Journal of Neuroscience Methods, 260 . pp. 202-214. doi:10.1016/j.jneumeth.2015.09.011

Fullam, Elizabeth, Prokes, Ivan, Fütterer, Klaus and Besra, Gurdyal S. (2016) Structural and functional analysis of the solute-binding protein UspC from Mycobacterium tuberculosis that is specific for amino sugars. Open Biology (6). doi:10.1098/rsob.160105

Garcia-Ojalvo, Jordi, Khalil, Ahmad S. and McCarthy, John E. G. (2016) Editorial : Biological insights from synthetic biology. Integrative Biology, 8 (4). pp. 380-382. doi:10.1039/c6ib90013e

Golicz, Agnieszka A., Bayer, Philipp E. , Barker, Guy C., Edger, Patrick P., Kim, Hye Ran, Martinez, Paula A., Chan, Chon Kit Kenneth, Severn-Ellis, Anita , McCombie, Richard , Parkin, Isobel A. P., Paterson, Andrew H., Pires, Chris , Sharpe, Andrew G., Tang, Haibao , Teakle, Graham R., Town, Christopher D., Batley, Jacqueline and Edwards, David (2016) The pangenome of an agronomically important crop plant Brassica oleracea. Nature Communications, 17 . 13390. doi:10.1038/NCOMMS13390

Gonçalves, Bronner P., Gupta, Sunetra and Penman, Bridget S. (2016) Sickle haemoglobin, haemoglobin C and malaria mortality feedbacks. Malaria Journal, 15 (1). pp. 1-7. 26. doi:10.1186/s12936-015-1077-5

Gorsich, Erin E., Luis, Angela D., Buhnerkempe, Michael G., Grear, Daniel A., Portacci, Katie, Miller, Ryan S. and Webb, Colleen T. (2016) Mapping U.S. cattle shipment networks : spatial and temporal patterns of trade communities from 2009 to 2011. Preventive Veterinary Medicine, 134 . pp. 82-91. doi:10.1016/j.prevetmed.2016.09.023

Gosling, Paul, Jones, Julie and Bending, G. D. (2016) Evidence for functional redundancy in arbuscular mycorrhizal fungi and implications for agroecosystem management. Mycorrhiza, 26 (1). pp. 77-83. doi:10.1007/s00572-015-0651-6

Granato, Elisa T., Harrison, Freya, Kümmerli, Rolf and Ross-Gillespie, Adin (2016) Do bacterial “virulence factors” always increase virulence? A meta-analysis of pyoverdine production in pseudomonas aeruginosa as a test case. Frontiers in Microbiology, 7 . doi:10.3389/fmicb.2016.01952

Grant, Claire, Smith, Edward M. and Green, Laura E. (2016) A longitudinal study of factors associated with acute and chronic mastitis and their impact on lamb growth rate in 10 suckler sheep flocks in Great Britain. Preventive Veterinary Medicine, 127 . pp. 27-36. doi:10.1016/j.prevetmed.2016.03.002

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Zhu, Z-X., Yu, Z-M., Taylor, Jemma L., Wu, Y-H. and Ni, J. (2016) The application of yeast hybrid systems in protein interaction analysis. Molecular Biology, 50 (5). pp. 663-670. doi:10.7868/S0026898416050189

de Mattos-Shipley, K. M. J., Ford, K. L., Alberti, Fabrizio, Banks, A. M., Bailey, A. M. and Foster, G. D. (2016) The good, the bad and the tasty : the many roles of mushrooms. Studies in Mycology, 85 . pp. 125-157. doi:10.1016/j.simyco.2016.11.002

de Wolf, Elizabeth, van de Wiel, Joseph, Cook, Jonathan and Dale, Nicholas (2016) Altered CO2 sensitivity of connexin26 mutant hemichannels in vitro. Physiological Reports, 4 (22). e13038.

Álvarez-Martín, Alba, Hilton, Sally, Bending, G. D., Rodríguez-Cruz, M. Sonia and Sánchez-Martín, M. Jesús (2016) Changes in activity and structure of the soil microbial community after application of azoxystrobin or pirimicarb and an organic amendment to an agricultural soil. Applied Soil Ecology, 106 . pp. 47-57. doi:10.1016/j.apsoil.2016.05.005

Üstün, Suayib, Sheikh, Arsheed, Gimenez-Ibanez , Selena, Jones, Alexandra M., Ntoukakis, Vardis and Börnke, Frederik (2016) The proteasome acts as a hub for plant immunity and is targeted by Pseudomonas type-III effectors. Plant Physiology, 172 (3). 1941-1958 . doi:10.​1104/​pp.​16.​00808

Book Item

Collier, Rosemary, Cross, Jerry V. and Xu, Xiangming (2016) Horticulture. In: Hester, R. E. and Harrison, R. M., (eds.) Agricultural Chemicals and the Environment : Issues and Potential Solutions : Edition 2. London: Royal Society of Chemistry. ISBN 9781782626909

Collins, Caitlin and Didelot, Xavier (2016) Reconstructing the ancestral relationships between bacterial pathogen genomes. In: Nordenfelt, P. and Collin, M., (eds.) Bacterial Pathogenesis. Springer, pp. 109-137. ISBN 9781493966714

Jacomin, Anne-Claire and Nezis, Ioannis P. (2016) Using fluorescent reporters to monitor autophagy in the female germline cells in Drosophila melanogaster. In: Oogenesis : Methods and Protocols. Springer, pp. 69-78. ISBN 9781493937936

Medley, Graham, Turner, H. C., Baggaley, R. F., Holland, C. and Hollingsworth, T. Déirdre (2016) The role of more sensitive helminth diagnostics in mass drug administration campaigns : elimination and health impacts. In: Advances in Parasitology. Mathematical Models for Neglected Tropical Diseases — Essential Tools for Control and Elimination, Part B, 94 . Academic Press, pp. 343-392. ISBN 9780128103951

Nitzsche, Björn, Barthel, Henryk, Lobsien, Donald, Boltze, Johannes, Zeisig, Vilia and Dreyer, Antje Y. (2016) Focal cerebral ischemia by permanent middle cerebral artery occlusion in sheep : surgical technique, clinical imaging, and histopathological results. In: Janowski , M., (ed.) Experimental Neurosurgery in Animal Models. New York, NY: Humana Press, pp. 195-225. ISBN 9781493937288

Palara, Anthimi, Sagona, Antonia P. and Nezis, Ioannis P. (2016) Preparation of Drosophila follicles for transmission electron microscopy. In: Oogenesis : Methods and Protocols. Methods in Molecular Biology, 1457 . Springer, pp. 105-110. ISBN 9781493937936

Reed, Kelly (2016) Archaeobotanical analysis of Bronze Age Feudvar. In: Kroll, H. and Reed, Kelly, (eds.) Die Archäobotanik Feudvar III. Würzburger University Press, pp. 197-297. ISBN 9783958260320

Rock, Kat S., Medley, Graham, Quinnell, R. J. and Courtenay, Orin (2016) Progress in the mathematical modelling of visceral leishmaniasis. In: Advances in Parasitology. Mathematical Models for Neglected Tropical Diseases Essential Tools for Control and Elimination, Part B, 94 . Elsevier BV, 49-131 . ISBN 9780128099711

Rock, Kat S., Medley, Graham, Quinnell, Rupert and Courtenay, Orin (2016) Progress in the mathematical modelling of visceral leishmaniasis. In: Advances in Parasitology. Academic Press. (In Press)

Stamm, Petra, Strauss, Soeren, Montenegro-Johnson, Thomas D., Smith, Richard and Bassel, George (2016) In silico methods for cell annotation, quantification of gene expression, and cell geometry at single-cell resolution using 3DCellAtlas. In: Plant Hormones. New York, NY: Humana Press, pp. 99-123. ISBN 9781493964673

Tsapras, Panagiotis , Sagona, Antonia P. and Nezis, Ioannis P. (2016) Immuno-gold labeling of Drosophila follicles for transmission electron microscopy. In: Oogenesis : Methods and Protocols. Methods in Molecular Biology, 1457 . Springer, pp. 97-103. ISBN 9781493937936

Working or Discussion Paper

Collier, Rosemary, Birch, Nicholas E., Hallier, Sonia, Walley, Peter Glen, Teakle, Graham R. and Label, Alain (2016) The potential for identifying and utilising sources of host plant resistance to the pests and pathogens of Brassica crops as a key component of future IPM strategies. Working Paper. IOBC-WPRS Bulletin. Working Group "Integrated Protection in Field Vegetables". Proceedings of the Meeting at Pflanzenschutzdienst Hamburg (Germany), 04 - 07 October, 2015, 118 .

Collier, Rosemary and Hommes, Martin (2016) Side effects of pesticide applications. Working Paper. IOBC-WPRS Bulletin. Working Group "Integrated Protection in Field Vegetables". Proceedings of the Meeting at Pflanzenschutzdienst Hamburg (Germany), 04 - 07 October, 2015, 118 .

Collier, Rosemary, Jukes, Andrew and Collins, Spencer (2016) Implementation of integrated pest Management by vegetable and salad growers in the UK. Working Paper. IOBC-WPRS Bulletin. Working Group "Integrated Protection in Field Vegetables". Proceedings of the Meeting at Pflanzenschutzdienst Hamburg (Germany), 04 - 07 October, 2015, 118 .

Collier, Rosemary, Jukes, Andrew, Daniel, Claudia and Hommes, Martin (2016) Ecological selectivity of pesticides and pesticide application methods. Working Paper. IOBC-WPRS Bulletin. Working Group "Integrated Protection in Field Vegetables". Proceedings of the Meeting at Pflanzenschutzdienst Hamburg (Germany), 04 - 07 October, 2015, 118 .

Daniel, Claudia, Collier, Rosemary, Thomas, Jane and Hommes, Martin (2016) Effects of landscape and region on pests and pathogens in Brassica vegetables and oilseed rape. Working Paper. IOBC-WPRS Bulletin. Working Group "Integrated Protection in Field Vegetables". Proceedings of the Meeting at Pflanzenschutzdienst Hamburg (Germany), 04 - 07 October, 2015, 118 .

Granato, Elisa T., Harrison, Freya, Kümmerli, Rolf and Ross-Gillespie, Adin (2016) When is a bacterial "virulence factor" really virulent? Working Paper. bioRxiv . (Unpublished)

Harrison, Freya and Diggle, Stephen P. (2016) An ex vivo lung model to study bronchioles infected with Pseudomonas aeruginosa biofilms. Working Paper. bioRxiv . (Unpublished)

Popat, Roman, Harrison, Freya, McNally, Luke, Williams, Paul and Diggle, Stephen P. (2016) Environmental modification via a quorum sensing molecule influences the social landscape of siderophore production. Working Paper. bioRxiv . (Unpublished)

Ruparell, Avika, Dubern, Jean Frederic, Ortori, Cartherine A, Harrison, Freya, Halliday, Nigel M, Emtage, Abigail, Ashawesh, Mahmoud, Laughton, Charles A, Diggle, Steve, Williams, Paul, Barrett, David A and Hardie, Kim Rachael (2016) The fitness burden imposed by synthesizing quorum sensing signals. Working Paper. bioRxiv . (Unpublished)

Journal Item

Hebenstreit, Daniel (2016) Funding : would Mendel have won it? Nature, 536 (7615). p. 148. doi:10.1038/536148c