The Library
Browse by Department at the University of Warwick
Up a level |
Jump to: Journal Article | Conference Item
Number of items: 34.
Journal Article
Achtman, Mark and Zhou, Zhemin (2014) Distinct genealogies for plasmids and chromosome. PLoS Genetics, Volume 10 (Number 12). Article number e1004874. doi:10.1371/journal.pgen.1004874 ISSN 1553-7390.
Alneberg, Johannes, Bjarnason, Brynjar SmΓ‘ri, de Bruijn, Ino, Schirmer, Melanie, Quick, Joshua, Ijaz, Umer Z., Lahti, Leo, Loman, Nicholas J., Andersson, Anders F. and Quince, Christopher (2014) Binning metagenomic contigs by coverage and composition. Nature Methods, Volume 11 . pp. 1144-1146. doi:10.1038/nmeth.3103 ISSN 1548-7091.
Chan, Jacqueline, Millard, Andrew D., Mann, Nicholas H. and SchΓ€fer, Hendrik (2014) Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes. Frontiers in Microbiology, Volume 5 . Article number 506. doi:10.3389/fmicb.2014.00506 ISSN 1664-302X.
Cui, Yujun, Yang, Xianwei, Xiao, Xiao, Anisimov, Andrey P., Li, Dongfang, Yan, Yanfeng, Zhou, Dongsheng, Rajerison, Minoarisoa, Carniel, Elisabeth, Achtman, Mark, Yang, Ruifu and Song, Yajun (2014) Genetic variations of live attenuated plague vaccine strains (Yersinia pestis EV76 lineage) during laboratory passages in different countries. Infection, Genetics and Evolution , 26 . pp. 172-179. doi:10.1016/j.meegid.2014.05.023 ISSN 1567-1348.
Dingle, K. E., Elliott, Bryony Clare, Robinson, Esther R., Griffiths, David, Eyre, D. W., Stoesser, N., Vaughan, A., Golubchik, Tanya, Fawley, W. N., Wilcox, M., Peto, T. E., Walker, S. A., Riley, T, Crook, Derrick and Didelot, Xavier (2014) Evolutionary history of the clostridium difficile pathogenicity locus. Genome Biology, 6 (1). pp. 36-52. doi:10.1093/gbe/evt204 ISSN 1474-7596.
Doughty, Emma L., Sergeant, Martin J., Ifedayo, Adetifa M. O., Antonio, Martin and Pallen, Mark J. (2014) Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer. PeerJ PrePrints . Article number e585 . doi:10.7717/peerj.585 ISSN 2167-9843.
Dutta, Arpana, Altenbach, Christian, Mangahas, Sheryll, Yanamala, Naveena, Gardner, Eric, Hubbell, Wayne L. and Klein-Seetharaman, Judith (2014) Differential dynamics of extracellular and cytoplasmic domains in denatured states of rhodopsin. Biochemistry, 53 (46). pp. 7160-7169. doi:10.1021/bi401557e ISSN 0006-2960.
Gonzalez-Iglesias, P., Scortti, Mariela M., MacArthur, Iain, Hapeshi, Alexia , RodrΓguez, HΓ©ctor, Prescott, John F. and VΓ‘zquez-Boland, JosΓ© A. (2014) Mouse lung infection model to assess rhodococcus equi virulence and vaccine protection. Veterinary Microbiology, 172 (1-2). pp. 256-264. doi:10.1016/j.vetmic.2014.03.026 ISSN 0378-1135.
Haase, Jana K., Didelot, Xavier, Lecuit, Marc, Korkeala, Hannu and Achtman, Mark (2014) The ubiquitous nature of Listeria monocytogenesclones : a large-scale Multilocus Sequence Typing study. Environmental Microbiology, Volume 16 (Number 2). pp. 405-416. doi:10.1111/1462-2920.12342 ISSN 1462-2912.
Halachev, Mihail R., Chan, Jacqueline, Constantinidou, Chrystala, Cumley, Nicola, Bradley, Craig, Smith-Banks, Matthew, Oppenheim, Beryl and Pallen, Mark J. (2014) Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumannii in Birmingham, England. Genome Medicine, Volume 6 (Number 11). pp. 1-13. Article number 70. doi:10.1186/s13073-014-0070-x ISSN 1756-994X.
Jiang, Feng, Waterfield, Nicholas R., Yang, Jian, Yang, Guowei and Jin, Qi (2014) A pseudomonas aeruginosa type VI secretion phospholipase D effector targets both prokaryotic and eukaryotic cells. Cell Host & Microbe, Volume 15 (Number 5). pp. 600-610. doi:10.1016/j.chom.2014.04.010 ISSN 1931-3128.
Kay, Gemma L., Sergeant, Martin J., Giuffra, Valentina, Bandiera, Pasquale, Milanese, Marco, Bramanti, Barbara, Bianucci, Raffaella and Pallen, Mark J. (2014) Recovery of a medieval Brucella melitensis genome using shotgun metagenomics. mBio, Volume 5 (Number 4). Article number e01337-14. doi:10.1128/mBio.01337-14 ISSN 2150-7511.
(2014) Management of patients with multidrug-resistant/extensively drug-resistant tuberculosis in Europe : a TBNET consensus statement. European Respiratory Journal, 44 ( 1). pp. 23-63. doi:10.1183/09031936.00188313 ISSN 0903-1936.
MahΓ©, FrΓ©dΓ©ric, Rognes, TorbjΓΈrn, Quince, Christopher, de Vargas, Colomban and Dunthorn, Micah (2014) Swarm : robust and fast clustering method for amplicon-based studies. PeerJ, 2 . e593. doi:10.7717/peerj.593 ISSN 2167-8359.
Malik, Harmit S., Olbermann, Patrick, Josenhans, Christine, Moodley, Yoshan, Uhr, Markus, Stamer, Christiana, Vauterin, Marc, Suerbaum, Sebastian, Achtman, Mark and Linz, Bodo (2014) Correction : A global overview of the genetic and functional diversity in the helicobacter pylori cag pathogenicity island. PLoS Genetics, Volume 10 (Number 1). doi:10.1371/annotation/3597bc55-d182-4838-b360-f739efddcb4e ISSN 1553-7390.
Millard, Andrew D., Hands-Portman, Ian and Zwirglmaier, Katrin (2014) Morphotypes of virus-like particles in two hydrothermal vent fields on the East Scotia Ridge, Antarctia. Bacteriophage, Volume 4 (Number 1). Article number e28732 . doi:10.4161/bact.28732 ISSN 2159-7073.
Millard, Andrew D., Scanlan, David J., Gallagher, Connor, Marsh, Andrew and Taylor, Paul C. (2014) Unexpected evolutionary proximity of eukaryotic and cyanobacterial enzymes responsible for biosynthesis of retinoic acid and its oxidation. Molecular BioSystems, 10 (3). pp. 380-383. doi:10.1039/c3mb70447e ISSN 1742-206X.
Mulley, Geraldine, Jenkins, A. Tobias A. and Waterfield, Nicholas R. (2014) Inactivation of the antibacterial and cytotoxic properties of silver ions by biologically relevant compounds. PLoS One, Volume 9 (Number 4). Article number e94409. doi:10.1371/journal.pone.0094409 ISSN 1932-6203.
Pallen, Mark J. (2014) Diagnostic metagenomics : potential applications to bacterial, viral and parasitic infections. Parasitology , Volume 141 (Number 14). pp. 1856-1862. doi:10.1017/S0031182014000134 ISSN 0031-1820.
Puxty, Richard John, Millard, Andrew D., Evans, David J. and Scanlan, David J. (2014) Shedding new light on viral photosynthesis. Photosynthesis Research, 126 (1). pp. 71-97. doi:10.1007/s11120-014-0057-x ISSN 0166-8595.
Quick, Joshua, Cumley, Nicola, Wearn, Christopher M., Niebel, Marc, Constantinidou, Chrystala, Thomas, Christopher M., Pallen, Mark J., Moiemen, Naiem S., Bamford, Amy, Oppenheim, Beryl and Loman, Nicholas J. (2014) Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital : an observational study using whole-genome sequencing. BMJ Open, Volume 4 (Number 11). Article number e006278. doi:10.1136/bmjopen-2014-006278 ISSN 2044-6055.
Quick, Joshua , Constantinidou, Chrystala, Pallen, Mark J., Oppenheim, Beryl and Loman, Nicholas J. (2014) Draft genome sequence of Elizabethkingia meningoseptica isolated from a traumatic wound. Genome Announcements, Volume 2 (Number 3). Article number e00355-14. doi:10.1128/genomeA.00355-14 ISSN 2169-8287.
Reilman, E., Mars, R. A. T., van Dijl, J. M. and Denham, Emma (2014) The multidrug ABC transporter BmrC/BmrD of Bacillus subtilis is regulated via a ribosome-mediated transcriptional attenuation mechanism. Nucleic Acids Research, 42 (18). pp. 11393-11407. doi:10.1093/nar/gku832 ISSN 0305-1048.
(2014) Parallel independent evolution of pathogenicity within the genus Yersinia. Proceedings of the National Academy of Sciences of the United States of America . doi:10.1073/pnas.1317161111 ISSN 0027-8424.
Rudkin, Justine K., Laabei, Maisem, Edwards, Andrew M., Joo, Hwang-Soo, Otto, Michael, Lennon, Katrina L., O'Gara, James P., Waterfield, Nicholas R. and Massey, Ruth C. (2014) Oxacillin alters the toxin expression profile of community-associated methicillin-resistant Staphylococcus aureus. Antimicrobial Agents and Chemotherapy, 58 (2). pp. 1100-1107. doi:10.1128/AAC.01618-13 ISSN 0066-4804.
Savin, Cyril, Martin, Liliane, Bouchier, Christiane, Filali, Sofia, Chenau, Jérôme, Zhou, Zhemin, Becher, François, Fukushima, Hiroshi, Thomson, Nicholas R., Scholz, Holger C. and Carniel, Elisabeth (2014) The Yersinia pseudotuberculosis complex : characterization and delineation of a new species, Yersinia wautersii. International Journal of Medical Microbiology, 304 (3-4). pp. 452-463. doi:10.1016/j.ijmm.2014.02.002 ISSN 1438-4221.
Sergeant, Martin J., Constantinidou, Chrystala, Cogan, Tristan A., Bedford, Michael R., Penn, Charles W. and Pallen, Mark J. (2014) Extensive microbial and functional diversity within the chicken cecal microbiome. PLoS ONE , Volume 9 (Number 3). Article number e91941. doi:10.1371/journal.pone.0091941 ISSN 1932-6203.
Wollman, Adam J. M., Sanchez-Cano, Carlos, Carstairs, Helen M. J., Cross, R. A. and Turberfield, Andrew J. (2014) Transport and self-organization across different length scales powered by motor proteins and programmed by DNA. Nature Nanotechnology, Volume 9 (Number 1). pp. 44-47. doi:10.1038/nnano.2013.230 ISSN 1748-3387.
Zhang, Cuicai, Pang, Bo, Zhou, Zhemin, Wang, Haiyin, Zhou, Haijian, Lu, Xin, Du, Pengcheng, Zhang, Lijuan, Li, Jie, Cui, Zhigang, Chen, Chen, Stokes, H. W. and Kan, Biao (2014) The purifying trend in the chromosomal integron in Vibrio cholerae strains during the seventh pandemic. Infection, Genetics and Evolution , Volume 26 . pp. 241-249. doi:10.1016/j.meegid.2014.05.019 ISSN 1567-1348.
Zhou, Zhemin, McCann, A., Weill, F. -X., Blin, C., Nair, S., Wain, J., Dougan, G. and Achtman, Mark (2014) Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever. Proceedings of the National Academy of Sciences of the United States of America, Volume 111 (Number 33). pp. 12199-12204. doi:10.1073/pnas.1411012111 ISSN 0027-8424.
de Ruiter, C. M., van der Veer, C., Leeflang, M. M. G., Deborggraeve, S., Lucas, C. and Adams, E. R. (2014) Molecular tools for diagnosis of visceral leishmaniasis : systematic review and meta-analysis of diagnostic test accuracy. Journal of Clinical Microbiology, Volume 52 (Number 9). pp. 3147-3155. doi:10.1128/JCM.00372-14 ISSN 0095-1137.
Conference Item
Loman, Nicholas J., Manzoor, Susan, Quick, Joshua, Fothergill, J. L., Gossain, Savita, Kenna, D., Turton, J., Walshaw, M., Whitehouse, Joanna L., Pallen, Mark J., Winstanley, Craig, Hawkey, P. M. (Peter M.) and Nash, E. F. (2014) 148 Use of whole-genome sequencing to identify transmission of Pseudomonas aeruginosa between cystic fibrosis patients. In: 37th European Cystic Fibrosis Conference, 11-14 Jun 2014. Published in: Journal of Cystic Fibrosis, Volume 13 doi:10.1016/S1569-1993(14)60284-8 ISSN 1569-1993.
Quraishi, M. N., Sergeant, Martin J., Kay, Gemma L., Iqbal, Tariq, Constantinidou, Chrystala, Chan, Jacqueline, Trivedi, Palak J., Ferguson, James W., Adams, David H., Pallen, Mark J. and Hirschfield, Gideon (2014) Probing the microbiota in PSC : the gut adherent microbiota of PSC-IBD is distinct to that of IBD and controls. In: The 65th Annual Meeting of the American Association for the Study of Liver Diseases: The Liver Meeting 2014, Nov 2014. Published in: Hepatology, 60 (S1). 264A-267A. doi:10.1002/hep.27470 ISSN 0270-9139.
Tacke, D., Gillis, M., Higgins, P. G., Millard, Andrew D., Chan, J. Z. M., Pallen, Mark J., Faetkenheuer, G., Cornely, O. A., Seifert, H. and Vehreschild, M. J. G. T. (2014) Use of whole-genome sequencing to investigate the epidemiology of vancomycin-resistant enterococci on an intensive care unit. In: 24th European Society of Clinical Microbiology and Infectious Diseases (ECCMID) Conference 2014, Barcelona, Spain, 10-14 May 2014