Journal Article

Alexandersson, Erik, Becker, John V. W., Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J. and Vivier, Melané A. (2011) Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. BMC Research Notes, Vol.4 (No.1). p. 493. doi:10.1186/1756-0500-4-493 ISSN 1756-0500.

Alijani, Azadeh and Richardson, Magnus J. E. (2011) Rate response of neurons subject to fast or frozen noise : from stochastic and homogeneous to deterministic and heterogeneous populations. Physical Review E, Vol.84 (No.1). doi:10.1103/PhysRevE.84.011919 ISSN 1539-3755.

Aslanidi, O., Atia, Jolene, Benson, Alan P., Berg, Hugo van den , Blanks, Andrew M., Choi, C., Gilbert, S. H., Goryanin, Igor, Hayes-Gill, Barrie, Holden, Arun V., Li, P., Norman, Jane E., Shmygol, Anatoly, Simpson, N. A. B., Taggart, Michael J., Tong, Wing Chiu and Zhang, Henggui (2011) Towards a computational reconstruction of the electrodynamics of premature and full term human labour. Progress in Biophysics and Molecular Biology, Vol.107 (No.1). pp. 183-192. doi:10.1016/j.pbiomolbio.2011.07.004 ISSN 0079-6107.

Ballesta, Annabelle, Dulong, Sandrine, Abbara, Chadi, Cohen, Boris, Okyar, Alper, Clairambault, Jean and Lévi, Francis A. (2011) A combined experimental and mathematical approach for molecular-based optimization of irinotecan circadian delivery. PLoS Computational Biology, 7 (9). pp. 1-12. Article number e1002143. doi:10.1371/journal.pcbi.1002143 ISSN 1553-7358.

(2011) High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell, The, Vol.23 (No.3). pp. 873-894. doi:10.1105/tpc.111.083345 ISSN 1040-4651.

Bryan, Samantha J., Burroughs, Nigel John, Evered, Carol, Sacharz, Joanna, Nenninger, Anja, Mullineaux, Conrad W. and Spence, Edward M. (2011) Loss of the SPHF homologue Slr1768 leads to a catastrophic failure in the maintenance of thylakoid membranes in synechocystis sp. PCC 6803. PLoS One, Vol.6 (No.5). e19625. doi:10.1371/journal.pone.0019625 ISSN 1932-6203.

Bugg, Tim, Braddick, Darren, Dowson, Christopher G. and Roper, David I. (2011) Bacterial cell wall assembly : still an attractive antibacterial target. Trends in Biotechnology, Vol.29 (No.4). pp. 167-173. doi:10.1016/j.tibtech.2010.12.006 ISSN 0167-7799.

Burroughs, Nigel John, Ferreira, M. (Miguel), Oliveira, Bruno M. P. M. and Pinto, Alberto A. (2011) A transcritical bifurcation in an immune response model. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1101-1106. doi:10.1080/10236190903095291 ISSN 1023-6198.

Burroughs, Nigel John, Köhler, Karsten, Miloserdov, Vladimir, Dustin, Michael L., Van der Merwe, P. Anton and Davis, Daniel M. (2011) Boltzmann energy-based image analysis demonstrates that extracellular domain size differences explain protein segregation at immune synapses. PLoS Computational Biology, Vol.7 (No.8). e1002076. doi:10.1371/journal.pcbi.1002076 ISSN 1553-7358.

Cooke, Emma J., Savage, Richard S., Kirk, Paul, Darkins, Robert and Wild, David L. (2011) Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements. BMC Bioinformatics, Vol.12 (No.1). p. 399. doi:10.1186/1471-2105-12-399 ISSN 1471-2105.

Domijan, Mirela and Rand, D. A. (David A.) (2011) Balance equations can buffer noisy and sustained environmental perturbations of circadian clocks. Interface Focus, Vol.1 (No.1). pp. 177-186. doi:10.1098/rsfs.2010.0007 ISSN 2042-8898.

Downey, Mike J., Jeziorska, Danuta M., Ott, Sascha, Tamai, T. Katherine, Koentges, Georgy, Vance, Keith W. and Bretschneider, Till (2011) Extracting fluorescent reporter time courses of cell lineages from high-throughput microscopy at low temporal resolution. PLoS ONE, Vol.6 (No.12). e27886. doi:10.1371/journal.pone.0027886 ISSN 1932-6203.

Arabidopsis Interactome Mapping Consortium (Including:

). (2011) Evidence for network evolution in an Arabidopsis interactome map. Science, Vol.333 (No.6042). pp. 601-607. doi:10.1126/science.1203877 ISSN 0036-8075.

Fabro, Georgina, Steinbrenner, Jens, Coates, Mary, Ishaque, Naveed, Baxter, Laura, Studholme, David J., Körner, Evelyn, Allen, Rebecca L., Piquerez, Sophie J M, Rougon-Cardoso, Alejandra, Greenshields, David, Lei, Rita, Badel, Jorge L, Caillaud, Marie-Cecile, Sohn, Kee-Hoon, Van den Ackerveken, Guido, Parker, Jane E, Beynon, Jim and Jones, Jonathan D. G. (2011) Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity. PLoS pathogens, Vol.7 (No.11). Article No. e1002348. doi:10.1371/journal.ppat.1002348 ISSN 1553-7374.

Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, D. A. (David A.), Davis, Julian R. E. and White, Michael R. H. (2011) Dynamic analysis of stochastic transcription cycles. PLos Biology, Vol.9 (No.4). doi:10.1371/journal.pbio.1000607 ISSN 1545-7885.

Kerr, Gary W., Sarkar, Sourav, Tibbles, Katherine L., Petronczki, Mark, Millar, Jonathan B. A. and Arumugam, Prakash (2011) Meiotic nuclear divisions in budding yeast require PP2ACdc55-mediated antagonism of Net1 phosphorylation by Cdk. The Journal of Cell Biology, Vol.193 (No.7). pp. 1157-1166. doi:10.1083/jcb.201103019 ISSN 0021-9525.

Kirk, Paul, Witkover, Aviva, Courtney, Alan, Lewin, Alexandra M., Wait, Robin, Stumpf, M. P. H. (Michael P. H.), Richardson, Sylvia, Taylor, G. P. (Graham P.) and Bangham, C. R. M. (Charles R. M.) (2011) Plasma proteome analysis in HTLV-1-associated myelopathy/tropical spastic paraparesis. Retrovirology, Vol.8 . p. 81. doi:10.1186/1742-4690-8-81 ISSN 1742-4690.

Klyuch, Boris P., Richardson, Magnus J. E., Dale, Nicholas and Wall, Mark J. (2011) The dynamics of single spike-evoked adenosine release in the cerebellum. Journal of Physiology, The, Vol.589 (No.2). pp. 283-295. doi:10.1113/jphysiol.2010.198986 ISSN 0022-3751.

Komorowski, Michal, Costa, Maria J. (Maria João), Rand, D. A. (David A.) and Stumpf, M. P. H. (Michael P. H.) (2011) Sensitivity, robustness, and identifiability in stochastic chemical kinetics models. Proceedings of the National Academy of Sciences, Volume 108 (Number 21). pp. 8645-8650. doi:10.1073/pnas.1015814108 ISSN 0027-8424.

Moore, Jonathan D., Jironkin, Aleksey, Chandler, Dave, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. Journal of General Virology, Vol.92 . pp. 156-161. doi:10.1099/vir.0.025965-0 ISSN 0022-1317.

Morrissey, Edward R., Juárez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2011) Inferring the time-invariant topology of a nonlinear sparse gene regulatory network using fully Bayesian spline autoregression. Biostatistics, Vol.12 (No.4). pp. 682-694. doi:10.1093/biostatistics/kxr009 ISSN 1465-4644.

European Union Effectoromics Consortium (Including:

). (2011) Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science, Vol.333 (No.6042). pp. 596-601. doi:10.1126/science.1203659 ISSN 0036-8075.

Mulema, Joseph M. K., Okori, Patrick and Denby, Katherine J. (2011) Proteomic analysis of the Arabidopsis thaliana-Botrytis cinerea interaction using two-dimensional liquid chromatography. African Journal of Biotechnology, Volume 10 (Number 76). pp. 17551-17563. doi:10.5897/AJB10.2558 ISSN 1684-5315.

Reddy, T. V. K., Mahmood, Shaik, Laskaris, Paris, Reddy, Y. Harish Kumar, Wellington, E. M. H. and Idris, M. M. (2011) Streptomyces hyderabadensis sp. nov., an actinomycete isolated from soil. International Journal of Systematic and Evolutionary Microbiology, Volume 61 (Number 1). pp. 76-80. doi:10.1099/ijs.0.020446-0 ISSN 1466-5026.

(2011) HerMES: point source catalogues from deep Herschel-SPIRE observations. Monthly Notices of the Royal Astronomical Society, Vol.419 (No.1). pp. 377-389. doi:10.1111/j.1365-2966.2011.19709.x ISSN 0035-8711.

Tsibidis, George D., Burroughs, Nigel John, Gaze, William H. and Wellington, E. M. H. (2011) Semi-automated Acanthamoeba polyphaga detection and computation of Salmonella typhimurium concentration in spatio-temporal images. Micron, Vol.42 (No.8). pp. 911-920. doi:10.1016/j.micron.2011.06.010 ISSN 0968-4328.

Vladimirou, Elina, Harry, Edward, Burroughs, Nigel John and McAinsh, Andrew D. (2011) Springs, clutches and motors : driving forward kinetochore mechanism by modelling. Chromosome Research, Volume 19 (Number 3). pp. 409-421. doi:10.1007/s10577-011-9191-x ISSN 0967-3849.

Yuan, Yinyin, Savage, Richard S. and Markowetz, Florian (2011) Patient-specific data fusion defines prognostic cancer subtypes. PLoS Computational Biology, Vol.7 (No.10). e1002227. doi:10.1371/journal.pcbi.1002227 ISSN 1553-7358.

Book Item

Almeida, João P., Fisher, Albert M., Pinto, Alberto A. and Rand, D. A. (David A.) (2011) Anosov and circle diffeomorphisms. In: Peixoto, Mauricio Matos and Pinto, Alberto A. and Rand, D. A. (David A.), (eds.) Dynamics, Games and Science I. Springer Proceedings in Mathematics, Vol.1 . Berlin ; Heidelberg: Springer, pp. 11-23. ISBN 9783642114557

Rand, D. A. (David A.) (2011) Network control analysis for time-dependent dynamical states. In: Peixoto, Mauricio Matos and Pinto, Alberto Adrego and Rand, D. A. (David A.), (eds.) Dynamics, Games and Science II. Springer proceedings in mathematics, Vol.2 . Berlin ; Heidelberg ; New York: Springer, pp. 1-24. ISBN 9783642147883

Journal Item

Loebel, Alex, Le Bé, Jean-Vincent, Richardson, Magnus J. E., Herz, Andreas and Markram, Henry (2011) The modular cross-synaptic nature of LTP/LTD following on-going neural activity. BMC Neuroscience, Vol.12 (Suppl.1). O1. doi:10.1186/1471-2202-12-S1-O1

Richardson, Magnus J. E. and Swarbrick, Rupert (2011) Exact firing-rate response of the integrate-and-fire neuron receiving finite amplitude excitatory and inhibitory post-synaptic potentials. BMC Neuroscience, Vol.12 (Suppl.1). O18. doi:10.1186/1471-2202-12-S1-O18