Journal Article

Baxter, Laura, Jironkin, Aleksey, Hickman, R. D. G., Moore, Jonathan D., Barrington, Christopher, Krusche, Peter, Dyer, Nigel, Buchanan-Wollaston, Vicky, Tiskin, Alexander, Beynon, Jim, Denby, Katherine J. and Ott, Sascha (2012) Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. The Plant Cell, Vol.24 (No.10). pp. 3949-3965. doi:10.1105/tpc.112.103010 ISSN 1040-4651.

Burkoff, Nikolas S., Várnai, Csilla, Wells, Stephen A. and Wild, David L. (2012) Exploring the energy landscapes of protein folding simulations with Bayesian computation. Biophysical Journal, Vol.102 (No.4). pp. 878-886. doi:10.1016/j.bpj.2011.12.053 ISSN 0006-3495.

Cevik, Volkan, Kidd, B. N., Zhang, Peijun, Hills, Claire E., Kiddle, Steven J., Denby, Katherine J., Holub, E. B., Cahill, D. M., Manners, J. M., Schenk, P. M., Beynon, Jim and Kazan, K. (2012) MEDIATOR25 acts as an integrative Hub for the regulation of jasmonate-responsive gene expression in arabidopsis. Plant Physiology, Volume 160 (Number 1). pp. 541-555. doi:10.1104/pp.112.202697 ISSN 0032-0889.

Domijan, Mirela and Pécou, Élisabeth (2012) The interaction graph structure of mass-action reaction networks. Journal of Mathematical Biology, 65 . pp. 375-402. doi:10.1007/s00285-011-0462-0 ISSN 0303-6812.

Giacchetti, S., Dugue, P. A., Innominato, P. F., Bjarnason, G. A., Focan, C., Garufi, C., Tumolo, S., Coudert, B., Iacobelli, S., Smaaland, R., Tampellini, M., Adam, R., Moreau, T. and Lévi, Francis A. (2012) Sex moderates circadian chemotherapy effects on survival of patients with metastatic colorectal cancer : a meta-analysis. Annals of Oncology, Volume 23 (Number 12). pp. 3110-3116. doi:10.1093/annonc/mds148 ISSN 0923-7534.

Grønlund, Jesper T., Eyres, Alison, Kumar, Sanjeev, Buchanan-Wollaston, Vicky and Gifford, Miriam L. (2012) Cell specific analysis of Arabidopsis leaves using fluorescence activated cell sorting. Journal of Visualized Experiments (No.68). e4214. doi:10.3791/4214 ISSN 1940-087X.

Iqbal, Mudassar, Mast, Yvonne, Amin, Rafat, Hodgson, D. A., Wohlleben, W. and Burroughs, Nigel John (2012) Extracting regulator activity profiles by integration of de novo motifs and expression data : characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor. Nucleic Acids Research, Vol.40 (No.12). pp. 5227-5239. doi:10.1093/nar/gks205 ISSN 0305-1048.

Kirk, Paul, Griffin, Jim E., Savage, Richard S., Ghahramani, Zoubin and Wild, David L. (2012) Bayesian correlated clustering to integrate multiple datasets. Bioinformatics, Volume 28 (Number 4). pp. 3290-3297. doi:10.1093/bioinformatics/bts595 ISSN 1367-4803.

Penfold, Christopher A., Brown, Paul E., Lawrence, Neil (Neil D.) and Goldman, Alastair S. H. (2012) Modeling meiotic chromosomes indicates a size dependent contribution of telomere clustering and chromosome rigidity to homologue juxtaposition. PLoS Computational Biology, Vol.8 (No.5). e1002496. doi:10.1371/journal.pcbi.1002496 ISSN 1553-7358.

Penfold, Christopher A., Buchanan-Wollaston, Vicky, Denby, Katherine J. and Wild, David L. (2012) Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. Bioinformatics, Vol.28 (No.12). i233-i241. doi:10.1093/bioinformatics/bts222 ISSN 1367-4803.

Thalassinos, Konstantinos, Vissers, Johannes P. C., Tenzer, Stefan, Levin, Yishai, Thompson, J. Will, Daniel, David, Mann, Darrin, DeLong, Mark R., Moseley, M. Arthur, America, Antoine H., Ottens, Andrew K., Cavey, Greg S., Efstathiou, Georgios, Scrivens, James H., Langridge, James I. and Geromanos, Scott J. (2012) Design and application of a data-independent precursor and product ion repository. Journal of The American Society for Mass Spectrometry, Vol.23 (No.10). pp. 1808-1820. doi:10.1007/s13361-012-0416-9 ISSN 1044-0305.

Thomas, L., Hodgson, D. A., Wentzel, A., Nieselt, K., Ellingsen, T. E., Moore, Jonathan D., Morrissey, Edward R., Legaie, Roxane, Wohlleben, W., Rodriguez-Garcia, A., Martin, J. F., Burroughs, Nigel John, Wellington, E. M. H. and Smith, M. C. M. (2012) Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture. Molecular & Cellular Proteomics, Vol.11 (No.2). M111.013797. doi:10.1074/mcp.M111.013797 ISSN 1535-9476.

Toni, Tina, Ozaki, Yu-ichi, Kirk, Paul, Kuroda, Shinya and Stumpf, Michael P. H. (2012) Elucidating the in vivo phosphorylation dynamics of the ERK MAP kinase using quantitative proteomics data and Bayesian model selection. Molecular BioSystems, Volume 8 (Number 7). pp. 1921-1929. doi:10.1039/c2mb05493k ISSN 1742-206X.

(2012) Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. The Plant Cell, Vol.24 (No.9). pp. 3530-3557. doi:10.1105/tpc.112.102046 ISSN 1040-4651.

Xue, Mingzhan, Rabbani, Naila, Momiji, Hiroshi, Imbasi, Precious, Anwar, M. Maqsud, Kitteringham, Neil, Park, B. Kevin, Souma, Tomokazu, Moriguchi, Takashi, Yamamoto, Masayuki and Thornalley, Paul J. (2012) Transcriptional control of glyoxalase 1 by Nrf2 provides a stress-responsive defence against dicarbonyl glycation. The Biochemical journal, Vol.443 (No.1). pp. 213-22. doi:10.1042/BJ20111648 ISSN 1470-8728.

Conference Item

Du, Cheng-Jin, Ferguson, John G., Hawkins, Phillip T., Stephens, Len R. and Bretschneider, Till (2012) Fast random walker for neutrophil cell segmentation in 3D. In: 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, 2-5 May 2012. Published in: 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI) pp. 190-193. ISBN 9781457718571. doi:10.1109/ISBI.2012.6235516