Journal Article

Bari, Muhammad F., Brown, Helen, Nicholson, Andrew G., Kerr, Keith M., Gosney, John R., Wallace, William A., Soomro, Irshad, Muller, Salli, Peat, Danielle, Moore, Jonathan D., Ward, Lesley A., Freidin, Maxim B., Lim, Eric, Vatish, Manu and Snead, David R. J. (2013) BAI3, CDX2 and VIL1 : a panel of three antibodies to distinguish small cell from large cell neuroendocrine lung carcinomas. Histopathology, Volume 64 (Number 4). pp. 547-556. doi:10.1111/his.12278 ISSN 0309-0167.

Bechtold, Ulrike, Albihlal, Waleed S., Lawson, Tracy, Fryer, Michael J., Sparrow, Penelope A. C., Richard, François, Persad, Ramona, Bowden, Laura, Hickman, Richard D. G., Martin, Cathie, Beynon, Jim, Buchanan-Wollaston, Vicky, Baker, N. R., Morison, James I. L., Schoffl, Friedrich, Ott, Sascha and Mullineaux, Philip M. (2013) Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection. Journal of Experimental Botany, Volume 64 (Number 11). pp. 3467-3481. doi:10.1093/jxb/ert185 ISSN 0022-0957.

Bond, M., Croft, Wayne D., Tyson, Richard, Bretschneider, Till, Davey, John and Ladds, Graham (2013) Quantitative analysis of human ras localization and function in the fission yeast Schizosaccharomyces pombe. Yeast, Volume 30 (Number 4). pp. 145-156. doi:10.1002/yea.2949 ISSN 0749-503X.

Brown, Paul E., Baxter, Laura, Hickman, Richard J., Beynon, Jim, Moore, Jonathan D. and Ott, Sascha (2013) MEME-LaB : motif analysis in clusters. Bioinformatics . doi:10.1093/bioinformatics/btt248 ISSN 1367-4803.

Burkoff, Nikolas S., Várnai, Csilla and Wild, David L. (2013) Predicting protein : sheet contacts using a maximum entropy-based correlated mutation measure. Bioinformatics, Volume 29 (Number 5). pp. 580-587. doi:10.1093/bioinformatics/btt005 ISSN 1367-4803.

Costa, Maria J. (Maria João), Finkenstädt, Bärbel, Gould, Peter D., Foreman, Julia, Halliday, Karen J., Hall, Anthony, Roche, Véronique, Lévi, Francis A. and Rand, D. A. (David A.) (2013) Inference on periodicity of circadian time series. Biostatistics, Volume 14 (Number 4). pp. 792-806. doi:10.1093/biostatistics/kxt020 ISSN 1465-4644.

Croft, Wayne D., Hills, Claire E., McCann, Eilish Clare, Bond, Michael, Esparza Franco, Manuel A., Bennett, Jeanette, Rand, D. A. (David A.), Davey, John and Ladds, Graham (2013) A physiologically required G protein-coupled receptor (GPCR)-regulator of G protein signaling (RGS) interaction that compartmentalizes RGS activity. Journal of Biological Chemistry, Volume 288 (Number 38). pp. 27327-27342. doi:10.1074/jbc.M113.497826 ISSN 0021-9258.

Darkins, Robert, Cooke, Emma J., Ghahramani, Zoubin, Kirk, P. (Paul), Wild, David L. and Savage, Richard S. (2013) Accelerating Bayesian hierarchical clustering of time series data with a randomised algorithm. PLoS One, 8 (4). e59795. doi:10.1371/journal.pone.0059795 ISSN 1932-6203.

Du, Cheng-Jin, Hawkins, Phillip T., Stephens, Len R. and Bretschneider, Till (2013) 3D time series analysis of cell shape using Laplacian approaches. BMC Bioinformatics, Volume 14 (Number 1). Article number 296. doi:10.1186/1471-2105-14-296 ISSN 1471-2105.

Finkenstädt, Bärbel, Woodcock, Dan J., Komorowski, Michal, Harper, Claire V., Davis, Julian R. E., White, Mike R. H. and Rand, D. A. (David A.) (2013) Quantifying intrinsic and extrinsic noise in gene transcription using the linear noise approximation : an application to single cell data. Annals of Applied Statistics, Volume 7 ( Number 4). pp. 1960-1982. ISSN 1932-6157.

Fu, Ying, Soni, Rina, Romero, Maria, Pizarro, Ana M., Salassa, Luca, Clarkson, Guy J., Hearn, Jessica M., Habtemariam, Abraha, Wills, Martin and Sadler, P. J. (2013) Mirror-image organometallic osmium arene iminopyridine halido complexes exhibit similar potent anticancer activity. Chemistry - A European Journal, Volume 19 (Number 45). pp. 15199-15209. doi:10.1002/chem.201302183 ISSN 0947-6539.

Gould, Peter D., Ugarte, Nicolas, Domijan, Mirela, Costa, Maria J. (Maria João), Foreman, Julia, MacGregor, Dana, Rose, Ken, Griffiths, Jayne, Millar, A. J. (Andrew J.), Finkenstädt, Bärbel, Penfield, Steven, Rand, D. A. (David A.), Halliday, Karen J. and Hall, Anthony J. W. (2013) Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology, Volume 9 . Article no. 650. doi:10.1038/msb.2013.7 ISSN 1744-4292.

Hearn, Jessica M., Romero-Canelón, Isolda, Qamar, Bushra, Liu, Zhe , Hands-Portman, Ian and Sadler, P. J. (2013) Organometallic iridium(III) anticancer complexes with new mechanisms of action: NCI-60 screening, mitochondrial targeting, and apoptosis. ACS Chemical Biology, Volume 8 (Number 6). pp. 1335-1343. doi:10.1021/cb400070a ISSN 1554-8929.

Hickman, Richard J., Hill, C., Penfold, Christopher A., Breeze, Emily, Bowden, Laura, Moore, Jonathan D., Zhang, Peijun, Jackson, Alison C., Cooke, Emma J., Bewicke-Copley, Findlay, Mead, A. (Andrew), Beynon, Jim, Wild, David L., Denby, Katherine J., Ott, Sascha and Buchanan-Wollaston, Vicky (2013) A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves. The Plant Journal, Volume 75 (Number 1). pp. 26-39. doi:10.1111/tpj.12194 ISSN 0960-7412.

Kerr, Michael I., Wall, Mark J. and Richardson, Magnus J. E. (2013) Adenosine A1 receptor activation mediates the developmental shift at layer 5 pyramidal cell synapses and is a determinant of mature synaptic strength. The Journal of Physiology, Volume 591 . pp. 3371-3380. doi:10.1113/jphysiol.2012.244392 ISSN 0022-3751.

Laranjeiro, R., Tamai, T. K., Peyric, E., Krusche, Peter, Ott, Sascha and Whitmore, D. (2013) Cyclin-dependent kinase inhibitor p20 controls circadian cell-cycle timing. Proceedings of the National Academy of Sciences of the United States of America, Volume 110 (Number 17). pp. 6835-6840. doi:10.1073/pnas.1217912110 ISSN 0027-8424.

Leonelli, Sabina, Smirnoff, N., Moore, Jonathan D., Cook, Charis and Bastow, Ruth (2013) Making open data work for plant scientists. Journal of Experimental Botany, Volume 64 (Number 14). pp. 4109-4117. doi:10.1093/jxb/ert273 ISSN 0022-0957.

Otten, Lucienne, Richards, Sarah-Jane, Fullam, Elizabeth, Besra, Gurdyal S. and Gibson, Matthew I. (2013) Gold nanoparticle-linked analysis of carbohydrate–protein interactions, and polymeric inhibitors, using unlabelled proteins; easy measurements using a ‘simple’ digital camera. Journal of Materials Chemistry B, Volume 1 (Number 20). pp. 2665-2672. doi:10.1039/c3tb20259c ISSN 2050-750X.

Panousopoulou, Eleni, Tyson, Richard A. (Richard Anthony), Bretschneider, Till and Green, Jeremy B.A. (2013) The distribution of Dishevelled in convergently extending mesoderm. Developmental Biology, Volume 382 (Number 2). pp. 496-503. doi:10.1016/j.ydbio.2013.07.012 ISSN 0012-1606.

Piper, Jason, Elze, Markus C., Cauchy, Pierre, Cockerill, Peter N., Bonifer, Constanze and Ott, Sascha (2013) Wellington : a novel method for the accurate identification of digital genomic footprints from DNase-seq data. Nucleic Acids Research, Volume 41 (Number 21). Article number e201. doi:10.1093/nar/gkt850 ISSN 0305-1048.

Read, D. S., Woodcock, D. J., Strachan, N. J. C., Forbes, K. J., Colles, F. M., Maiden, M. C. J., Clifton-Hadley, F., Ridley, A., Vidal, A., Rodgers, J., Whiteley, A. S. and Sheppard, S. K. (2013) Evidence for phenotypic plasticity among multihost campylobacter jejuni and C. coli lineages, obtained using ribosomal multilocus sequence typing and raman Spectroscopy. Applied and Environmental Microbiology, Volume 79 (Number 3). pp. 965-973. doi:10.1128/AEM.02521-12 ISSN 0099-2240.

Robery, Steven, Tyson, Richard A. (Richard Anthony), Dinh, Christopher, Kuspa, Adam, Noegel, Angelika A., Bretschneider, Till, Andrews, P. L. R. (Paul L. R.) and Williams, Robin S. B. (2013) A novel human receptor involved in bitter tastant detection identified using dictyostelium discoideum. Journal of Cell Science, Volume 126 (Number 23). pp. 5465-5476. doi:10.1242/jcs.136440 ISSN 0021-9533.

Sheldon, Rachel E., Baghdadi, Marc, McCloskey, Conor, Blanks, Andrew M., Shmygol, Anatoly and Berg, Hugo van den (2013) Spatial heterogeneity enhances and modulates excitability in a mathematical model of the myometrium. Journal of The Royal Society Interface, Volume 10 (Number 86). p. 20130458. doi:10.1098/rsif.2013.0458 ISSN 1742-5689.

Sirinukunwattana, Korsuk, Savage, Richard S., Bari, Muhammad F., Snead, David R. J. and Rajpoot, Nasir M. (2013) Bayesian hierarchical clustering for studying cancer gene expression data with unknown statistics. PLoS One, 8 (10). e75748. doi:10.1371/journal.pone.0075748 ISSN 1932-6203.

Tibbles, Katherine L., Sarkar, S. (Sourav), Novák, Béla and Arumugam, Prakash (2013) CDK-dependent nuclear localization of B-Cyclin Clb1 promotes FEAR activation during meiosis I in budding yeast. PLoS One, Volume 8 (Number 11). Article number e79001. doi:10.1371/journal.pone.0079001 ISSN 1932-6203.

Traka, Maria H., Saha, Shikha, Huseby, Stine, Kopriva, Stanislav, Walley, Peter Glen, Barker, Guy C., Moore, Jonathan D., Mero, Gene, van den Bosch, Frans, Constant, Howard, Kelly, Leo, Schepers, Hans, Boddupalli, Sekhar and Mithen, Richard F. (2013) Genetic regulation of glucoraphanin accumulation in Beneforté® broccoli. New Phytologist, Volume 198 (Number 4). pp. 1085-1095. doi:10.1111/nph.12232 ISSN 0028-646X.

Vladimirou, Elina , Mchedlishvili, Nunu, Gasic, Ivana, Armond, Jonathan W., Samora, Catarina P., Meraldi, Patrick and McAinsh, Andrew D. (2013) Nonautonomous movement of chromosomes in mitosis. Developmental Cell, Volume 27 (Number 1). pp. 60-71. doi:10.1016/j.devcel.2013.08.004 ISSN 1534-5807.

Várnai, Csilla, Burkoff, Nikolas S. and Wild, David L. (2013) Efficient parameter estimation of generalizable coarse-grained protein force fields using contrastive civergence : a maximum likelihood approach. Journal of Chemical Theory and Computation, Volume 9 (Number 12). pp. 5718-5733. doi:10.1021/ct400628h ISSN 1549-9618.

Wood, Graham and Saville, David J. (2013) A geometric examination of linear model assumptions. Australian & New Zealand Journal of Statistics , Volume 55 (Number 3). pp. 285-303. doi:10.1111/anzs.12042 ISSN 1369-1473.

Woodcock, Dan J., Vance, Keith W., Komorowski, Michal, Koentges, Georgy, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number. Bioinformatics, Volume 29 (Number 12). pp. 1519-1525. doi:10.1093/bioinformatics/btt201 ISSN 1367-4803.

Conference Item

Jefferyes, Samuel, D. R., Epstein, D. B. A., Straube, Anne and Rajpoot, Nasir M. (Nasir Mahmood) (2013) A novel framework for exploratory analysis of highly variable morphology of migrating epithelial cells. In: 2013 35TH Annual International Conference of The IEEE Engineering in Medicine and Biology Society (EMBC), Osaka, 3-7 July 2013 pp. 3463-3466. doi:10.1109/EMBC.2013.6610287