Journal Article

Adamson, Antony, Boddington, Christopher, Downton, Polly, Rowe, William, Bagnall, James, Lam, Connie, Maya-Mendoza, Apolinar, Schmidt, Lorraine, Harper, Claire V., Spiller, David G., Rand, David A., Jackson, Dean A., White, Michael R. H. and Paszek, Pawel (2016) Signal transduction controls heterogeneous NF-κB dynamics and target gene expression through cytokine-specific refractory states. Nature Communications, 7 . 12057. doi:10.1038/ncomms12057 ISSN 2041-1723.

Ahmed, Usman, Anwar, Attia, Savage, Richard S., Thornalley, Paul J. and Rabbani, Naila (2016) Protein oxidation, nitration and glycation biomarkers for early-stage diagnosis of osteoarthritis of the knee and typing and progression of arthritic disease. Arthritis Research & Therapy, 18 (1). 250. doi:10.1186/s13075-016-1154-3 ISSN 1478-6354.

Anwar, Attia, Marini, Marina, Abruzzo, Provvidenza Maria, Bolotta, Alessandra, Ghezzo, Alessandro, Visconti, Paola, Thornalley, Paul J. and Rabbani, Naila (2016) Quantitation of plasma thiamine, related metabolites and plasma protein oxidative damage markers in children with autism spectrum disorder and healthy controls. Free Radical Research, 50 (Supplement 1). S85-S90 . doi:10.1080/10715762.2016.1239821 ISSN 1071-5762.

Arasaradnam, Ramesh P., McFarlane, Michael J., Ling, K., Wurie, S., O’Connell, N., Nwokolo, Chuka U., Bardhan, Karna Dev, Skinner, J., Savage, Richard S. and Covington, James A. (2016) Breathomics—exhaled volatile organic compound analysis to detect hepatic encephalopathy : a pilot study. Journal of Breath Research, 10 (1). pp. 1-6. 016012. doi:10.1088/1752-7155/10/1/016012 ISSN 1752-7163.

Armond, Jonathan W., Vladimirou, Elina, McAinsh, Andrew D. and Burroughs, Nigel John (2016) KiT : a MATLAB package for kinetochore tracking. Bioinformatics, 32 (12). pp. 1917-1919. doi:10.1093/bioinformatics/btw087 ISSN 1367-4803.

Barchinger, Sarah E., Pirbadian, Sahand, Sambles, Christine, Baker, Carol S., Leung, Kar Man, Burroughs, Nigel John, El-Naggar, Mohamed Y., Golbeck, John H. and Spormann, A. M. (2016) Regulation of gene expression in Shewanella oneidensis MR-1 during electron acceptor limitation and bacterial nanowire formation. Applied and Environmental Microbiology, 82 (17). pp. 5428-5443. doi:10.1128/AEM.01615-16 ISSN 0099-2240.

(2016) Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis. The Plant Cell, 28 (2). pp. 345-366. doi:10.1105/tpc.15.00910 ISSN 1040-4651.

Bevington, S. L., Cauchy, P., Piper, Jason, Bertrand, E., Lalli, N, Jarvis, R. C., Gilding, L. N., Ott, Sascha, Bonifer, C. and Cockerill, P. N. (2016) Inducible chromatin priming is associated with the establishment of immunological memory in T cells. The EMBO Journal, 35 (5). pp. 515-535. doi:10.15252/embj.201592534 ISSN 0261-4189.

Bird, Alex D., Wall, Mark J. and Richardson, Magnus J. E. (2016) Bayesian inference of synaptic quantal parameters from correlated vesicle release. Frontiers in Computational Neuroscience, 10 . 116. doi:10.3389/fncom.2016.00116 ISSN 1662-5188.

Bretschneider, Till, Othmer, Hans G. and Weijer, Cornelis J. (2016) Progress and perspectives in signal transduction, actin dynamics, and movement at the cell and tissue level : lessons from Dictyostelium. Interface Focus, 6 (5). 20160047. ISSN 2042-8898.

Burkoff, Nikolas S., Baldock, Robert J.N., Várnai, Csilla, Wild, David L. and Csanyi, Gabor (2016) Exploiting molecular dynamics in Nested Sampling simulations of small peptides. Computer Physics Communications, 201 . pp. 8-18. doi:10.1016/j.cpc.2015.12.005 ISSN 0010-4655.

Dallmann, Robert, Okyar, Alper and Lévi, Francis A. (2016) Dosing-time makes the poison : circadian regulation and pharmacotherapy. Trends in Molecular Medicine, 22 (5). pp. 430-445. doi:10.1016/j.molmed.2016.03.004 ISSN 1471-4914.

Domijan, Mirela, Brown, Paul E., Shulgin, Boris V. and Rand, D. A. (David A.) (2016) PeTTSy : a computational tool for perturbation analysis of complex systems biology models. BMC Bioinformatics, 17 (124). doi:10.1186/s12859-016-0972-2 ISSN 1471-2105.

Gupta, Shabarni, Manubhai, K. P., Kulkarni, Vishwesh V. and Srivastava, Sanjeeva (2016) An overview of innovations and industrial solutions in protein microarray technology. Proteomics, 16 (8). pp. 1297-1308. doi:10.1002/pmic.201500429

Jansen, Heiko T. , Leise, Tanya, Stenhouse, Gordon, Pigeon, Karine, Kasworm, Wayne, Teisberg, Justin, Radandt, Thomas, Dallmann, Robert, Brown, Steven and Robbins, Charles T. (2016) The bear circadian clock doesn’t ‘sleep’ during winter dormancy. Frontiers in Zoology, 13 (42). doi:10.1186/s12983-016-0173-x ISSN 1742-9994 .

Kaufmann, Timothy J., Harrison, Paul Michael, Richardson, Magnus J. E., Pinheiro, Teresa J. T. and Wall, Mark J. (2016) Intracellular soluble α-synuclein oligomers reduce pyramidal cell excitability. The Journal of Physiology, 594 (10). 2751-2772 . doi:10.1113/JP271968 ISSN 0022-3751.

Kikuchi, Hugh, Reiman, Anne, Nyoni, Jenifer, Lloyd, Katherine L., Savage, Richard S., Wotherspoon, Tina, Berry, Lisa, Snead, David and Cree, Ian A. (2016) Development and validation of a TaqMan Array for cancer mutation analysis. Pathogenesis, 3 (1). pp. 1-8. S2214-6636(16)00002-X. doi:10.1016/j.pathog.2016.02.001 ISSN 2214-6636.

Lucas, Emma S., Dyer, Nigel P., Fishwick, Katherine, Ott, Sascha and Brosens, Jan J. (2016) Success after failure : the role of endometrial stem cells in recurrent miscarriage. Reproduction, 152 (5). R159-R166. doi:10.1530/REP-16-0306 ISSN 1470-1626.

Masania, Jinit , Malczewska-Malec, Malgorzata, Razny, Urszula, Goralska, Joanna, Zdzienicka, Anna, Kiec-Wilk, Beata, Gruca, Anna, Stancel-Mozwillo, Julita, Dembinska-Kiec, Aldona, Rabbani, Naila and Thornalley, Paul J. (2016) Dicarbonyl stress in clinical obesity. Glycoconjugates Journal, 33 (4). pp. 581-589. doi:10.1007/s10719-016-9692-0 ISSN 0282-0080.

Mason, Sam, Sayyid, Faiz, Kirk, Paul, Starr, Colin and Wild, David L. (2016) MDI-GPU : accelerating integrative modelling for genomic-scale data using GP-GPU computing. Statistical Applications in Genetics and Molecular Biology, 15 (1). pp. 83-86. doi:10.1515/sagmb-2015-0055 ISSN 1544-6115.

Real, Francisco X., Ward, Douglas G., Baxter, Laura, Gordon, Naheema S., Ott, Sascha, Savage, Richard S., Beggs, Andrew D., James, Jonathan D., Lickiss, Jennifer, Green, Shaun, Wallis, Yvonne, Wei, Wenbin, James, Nicholas D., Zeegers, Maurice P., Cheng, K. K., Mathews, Glenn M., Patel, Prashant, Griffiths, Michael and Bryan, Richard T. (2016) Multiplex PCR and next generation sequencing for the non-invasive detection of bladder cancer. PLoS One, 11 (2). pp. 1-11. e0149756. doi:10.1371/journal.pone.0149756 ISSN 1932-6203.

Sahota, Amandip S., Gowda, Ravi, Arasaradnam, Ramesh P., Daulton, Emma, Savage, Richard S., Skinner, Jim R., Adams, Emily, Ward, Stephen A. and Covington, James A. (2016) A simple breath test for tuberculosis using ion mobility : a pilot study. Tuberculosis, 99 . pp. 143-146. doi:10.1016/j.tube.2016.05.005 ISSN 1472-9792.

Savage, Richard S. and Yuan, Yinyin (2016) Predicting chemoinsensitivity in breast cancer with ’omics/digital pathology data fusion. Royal Society Open Science , 3 (2). pp. 1-13. 140501. doi:10.1098/rsos.140501 ISSN 2054-5703.

Shafie, Alaa, Xue, Mingzhan, Barker, Guy C., Zehnder, Daniel, Thornalley, Paul J. and Rabbani, Naila (2016) Reappraisal of putative glyoxalase 1-deficient mouse and dicarbonyl stress on embryonic stem cells in vitro. Biochemical Journal, 473 (22). pp. 4255-4270. doi:10.1042/BCJ20160691 ISSN 0264-6021.

Szomolay, Barbara, Liu, Jie, Brown, Paul E., Miles, John J., Clement, Mathew, Llewellyn-Lacey, Sian, Dolton, Garry, Ekeruche-Makinde, Julia, Lissina, Anya, Schauenburg, Andrea J., Sewell, Andrew K., Burrows, Scott R., Roederer, Mario, Price, David A., Wooldridge, Linda and Berg, Hugo van den (2016) Identification of human viral protein-derived ligands recognized by individual MHCI-restricted T-cell receptors. Immunology and Cell Biology, 94 . pp. 573-582. doi:10.1038/icb.2016.12 ISSN 0818-9641.

Xue, Mingzhan, Weickert, Martin O., Qureshi, S. A., Kandala, Ngianga-Bakwin, Anwar, Attia, Waldron, Molly, Shafie, Alaa, Messenger, David, Fowler, Mark, Jenkins, Gail, Rabbani, Naila and Thornalley, Paul J. (2016) Improved glycemic control and vascular function in overweight and obese subjects by glyoxalase 1 inducer formulation. Diabetes . db160153. doi:10.2337/db16-0153 ISSN 0012-1797.

Yang, Jing, Penfold, Christopher A., Grant, Murray R. and Rattray, Magnus (2016) Inferring the perturbation time from biological time course data. Bioinformatics, 32 (19). pp. 2956-2964. doi:10.1093/bioinformatics/btw329 ISSN 1367-4803.

Book Item

Rabbani, Naila and Thornalley, Paul J. (2016) Glycation of proteins. In: Griffiths, J. R. and Unwin, R. D. , (eds.) Analysis of Protein Post-Translational Modifications by Mass Spectrometry. Hoboken, NJ, USA: John Wiley & Sons, Inc., , pp. 307-332. ISBN 9781119045854

Conference Item

Azharian, Sahar, Neal, Matthew, Kyrou, Iannos, Vrbikova, Jana, Hainer, Voitech, Sramkova, Petra, Fried, Martin, Piya, Milan K., Kumar, Sudhesh, Covington, James A. and McTernan, P. G. (Philip G.) (2016) LBPS 01-22 Volatile organic compounds : a potential biomarker for prediction of hypertension post-bariatric surgery. In: Society for Endocrinology BES 2016, Brighton, UK, 07-09 Nov 2016 . Published in: Journal of Hypertension, 34 (e-Supplement 1). doi:10.1097/01.hjh.0000500391.94644.e4 ISSN 0263-6352.

Dataset

Sahota, Amandip S., Gowda, Ravi, Arasaradnam, Ramesh P., Daulton, Emma, Savage, Richard S., Skinner, Jim R., Adams, Emily, Ward, Stephen A. and Covington, James A. (2016) Data for A simple breath test for Tuberculosis using ion mobility: A pilot study. [Dataset]