Journal Article

Abbasi, Wajid Arshad, Asif, Amina, Ben-Hur, Asa and Minhas, Fayyaz ul Amir Afsar (2018) Learning protein binding affinity using privileged information. BMC Bioinformatics, 19 (1). 425. doi:10.1186/s12859-018-2448-z

Abbasi, Wajid Arshad, Asiff, Amina, Andleeb, Saiqa and Minhas, Fayyaz ul Amir Afsar (2017) CaMELS : In silicoprediction of calmodulin binding proteins and their binding sites. Proteins: Structure, Function, and Bioinformatics, 85 (9). pp. 1724-1740. doi:10.1002/prot.25330

Abbasi, Wajid Arshad and Minhas, Fayyaz ul Amir Afsar (2016) Issues in performance evaluation for host–pathogen protein interaction prediction. Journal of Bioinformatics and Computational Biology, 14 (3). 1650011. doi:10.1142/S0219720016500116

Abbasi, Wajid Arshad, Yaseen, Adiba, Hassan, Fahad Ul, Andleeb, Saiqa and Minhas, Fayyaz ul Amir Afsar (2020) ISLAND: in-silico proteins binding affinity prediction using sequence information. BioData Mining, 13 (1). 20. doi:10.1186/s13040-020-00231-w

Abiola, Temitope T., Auckloo, Nazia, Woolley, Jack Matthew, Corre, Christophe, Poigny, Stéphane and Stavros, Vasilios G. (2021) Unravelling the photoprotection properties of garden cress sprout extract. Molecules, 26 (24). e7631. doi:10.3390/molecules26247631

(2019) Sharing data from molecular simulations. Journal of Chemical Information and Modeling, 59 (10). pp. 4093-4099. doi:10.1021/acs.jcim.9b00665

Achtman, Mark and Zhou, Zhemin (2020) Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on Streptococcus mutans and Streptococcus sobrinus. Philosophical Transactions of the Royal Society B: Biological Sciences, 375 (1812). 20190573. doi:10.1098/rstb.2019.0573

Adaikalakoteswari, Antonysunil, Finer, Sarah, Voyias, Philip D., McCarthy, Ciara M., Vatish, Manu, Moore, Jonathan D., Smart-Halajko, Melissa, Bawazeer, Nahla M., Al-Daghri, Nasser M., McTernan, P. G., Kumar, Sudhesh, Hitman, Graham A., Saravanan, Ponnusamy and Tripathi, Gyanendra (2015) Vitamin B12 insufficiency induces cholesterol biosynthesis by limiting s-adenosylmethionine and modulating the methylation of SREBF1 and LDLR genes. Clinical Epigenetics, Volume 7 (Number 1). pp. 1-14. Article number 14. doi:10.1186/s13148-015-0046-8

Adelman, James S., Marquis, Suzanne J. and Sabatos-DeVito, Maura G. (2010) Letters in words are read simultaneously, not in left-to-right sequence. Psychological Science, Vol.21 (No.12). pp. 1799-1801. doi:10.1177/0956797610387442

Adib, Rozita, Montgomery, Jessica, Atherton, Joseph, O'Regan, Laura, Richards, Mark W., Straatman, Kees, Roth, Daniel, Straube, Anne, Bayliss, Richard, Moores, Carolyn and Fry, Andrew M. (2019) Mitotic phosphorylation by NEK6 and NEK7 reduces the microtubule affinity of EML4 to promote chromosome congression. Science Signalling, 12 (594). eaaw2939. doi:10.1126/scisignal.aaw2939

Aguiar, M., Andronis, L. (Lazaros) , Pallan, M., Högler , W. and Frew, E. (2020) The economic case for prevention of population vitamin D deficiency : a modelling study using data from England and Wales. European Journal of Clinical Nutrition, 74 . pp. 825-833. doi:10.1038/s41430-019-0486-x

Akman, Ozgur E., Rand, D. A. (David A.), Brown, Paul E. and Millar, A. J. (Andrew J.) (2010) Robustness from flexibility in the fungal circadian clock. BMC Systems Biology, Vol.4 (No.88). doi:10.1186/1752-0509-4-88

Al-Attas, Omar S., Al-Daghri, Nasser M., Alokail, Majed S., Alkharfy, Khalid M., Alfadda, Assim, McTernan, P. G. (Philip G.), Gibson, Greg, Sabico, Shaun and Chrousos, George P. (2012) Circulating leukocyte telomere length is highly heritable among families of Arab descent. BMC Medical Genetics, Vol.13 (No.1). p. 38. doi:10.1186/1471-2350-13-38

Al-Daghri, Nasser M., Al-Attas, Omar S., Alokail, Majed S., Alkharfy, Khalid M., Yakout, Sobhy M., Sabico, Shaun, Gibson, Greg, Chrousos, George P. and Kumar, Sudhesh (2011) Parent-offspring transmission of adipocytokine levels and their associations with metabolic traits. PL o S One, Vol.6 (No.4). e18182 . doi:10.1371/journal.pone.0018182

Al-Mawali, Adhra, D'Elia, Lanfranco, Jayapal, Sathish Kumar, Morsi, Magdi, Al-Shekaili, Waleed Nasser, Pinto, Avinash D., Al-Kharusi, Hilal, Al-Balushi, Zainab, Idikula, John, Al-Harrasi, Ayaman and Cappuccio, Francesco (2020) A national survey to estimate sodium and potassium intake, and knowledge attitudes and behaviours towards salt consumption of adults in the Sultanate of Oman. BMJ Open, 10 (10). e037012. doi:10.1136/bmjopen-2020-037012

Al-Musharaf, Sara, Fouda, Mona A., Turkestani, Iqbal Z., Al-Ajlan, Abdulrahman, Sabico, Shaun, Alnaami, Abdullah M., Wani, Kaiser, Hussain, Syed Danish, Alraqebah, Buthaynah, Al-Serehi, Amal, Alshingetti, Naemah M., Al-Daghri, Nasser, McTernan, Philip G, Wimalawansa, Sunil J. and Saravanan, Ponnusamy (2018) Vitamin D deficiency prevalence and predictors in early pregnancy among Arab women. Nutrients, 10 (4). 489. doi:10.3390/nu10040489

Al-Othman, Abdulaziz, Al-Musharaf, Sara, Al-Daghri, Nasser M., Yakout, Sobhy M., Alkharfy, Khalid M., Al-Saleh, Yousef, Al-Attas, Omar S., Alokail, Majed S., Moharram, Osama, Sabico, Shaun, Kumar, Sudhesh and Chrousos, George P. (2012) Tea and coffee consumption in relation to vitamin D and calcium levels in Saudi adolescents. Nutrition Journal, Vol.11 (No.1). Article number 56. doi:10.1186/1475-2891-11-56

Al-Salihi, Suhad A. A. and Alberti, Fabrizio (2021) Naturally occurring terpenes : a promising class of organic molecules to address influenza pandemics. Natural Products and Bioprospecting, 11 . pp. 405-419. doi:10.1007/s13659-021-00306-z

Al-Sandaqchi, Alaa T., Brignell, Chris, Collingwood, Joanna F., Geraki, Kalotina, Mirkes, Evgeny M., Kong, Kenny, Castellanos, Marcos, May, Sean T., Stevenson, Carl W. and Elsheikha, Hany M. (2018) Metallome of cerebrovascular endothelial cells infected with Toxoplasma gondii using μ-XRF imaging and inductively coupled plasma mass spectrometry. Metallomics, 10 (10). pp. 1401-1414. doi:10.1039/c8mt00136g

AlRachid, H., Mones, Letif and Ortner, Christoph (2018) Some remarks on preconditioning molecular dynamics. SMAI Journal of Computational Mathematics, 4 . pp. 57-80. doi:10.5802/smai-jcm.29

Alam, Mohammad T., Olin-Sandoval, Viridiana, Stincone, Anna, Keller, Markus A., Zelezniak, Aleksej, Luisi, Ben and Ralser, Markus (2017) The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization. Nature Communications, 8 . 16018. doi:10.1038/ncomms16018

Alawo, Deborah O. A., Tahir, Tariq A., Fischer, Marlies, Bates, Declan, Amirova, Svetlana R. and Brindle, Nicholas P. J. (2017) Regulation of angiopoietin signalling by soluble Tie2 ectodomain and engineered ligand trap. Scientific Reports, 7 (1). 3658. doi:10.1038/s41598-017-03981-6

Alford, Justine E., Gumbs, Jade and Anderson, Emma C. (2014) A new role for clathrin adaptor proteins 1 and 3 in lipoplex trafficking. PLoS ONE, Volume 9 (Number 3). Article number e91429. doi:10.1371/journal.pone.0091429

Algethami, Norah, Sadeghi, Hatef, Sangtarash, Sara and Lambert, Colin J. (2018) The conductance of porphyrin-based molecular nanowires increases with length. Nano Letters, 18 (7). pp. 4482-4486. doi:10.1021/acs.nanolett.8b01621

Alguel, Y., Cameron, Alexander, Diallinas, G. and Byrne, B. (2016) Transporter oligomerization : form and function. Biochemical Society Transactions, 44 (6). pp. 1737-1744. doi:10.1042/BST20160217

Alhujaily, Muhanad Musaad M., Abbas, Hafsa, Xue, Mingzhan, de la Fuente, Alberto, Rabbani, Naila and Thornalley, Paul J. (2021) Studies of glyoxalase 1-linked multidrug resistance reveal glycolysis-derived reactive metabolite, methylglyoxal, is a common contributor in cancer chemotherapy targeting the spliceosome. Frontiers in Oncology, 11 . 748698. doi:10.3389/fonc.2021.748698

Alhusaini, S., McGee, K. C., Harte, A. L., McTernan, P. G., Kumar, Sudhesh and Tripathi, Gyanendra (2010) Lipopolysaccharide, high glucose and saturated fatty acids induce endoplasmic reticulum stress in cultured primary human adipocytes : salicylate alleviates this stress. Biochemical and Biophysical Research Communications, Vol.397 (No.3). pp. 472-478. doi:10.1016/j.bbrc.2010.05.138

Alkhalaf, Lona M., Barry, Sarah M., Rea, Dean, Gallo, Angelo, Griffiths, Daniel, Lewandowski, Józef R., Fülöp, Vilmos and Challis, Gregory L. (2019) Binding of distinct substrate conformations enables hydroxylation of remote sties in thaxtomin D by cytochrome P450 TxtC. Journal of the American Chemical Society, 141 (1). pp. 216-222. doi:10.1021/jacs.8b08864

Allaby, Robin G., Kistler, Logan, Gutaker, Rafał M., Ware, Roselyn, Kitchen, James, Smith, Oliver and Clarke, Andrew C. (2015) Archaeogenomic insights into the adaptation of plants to the human environment : pushing plant–hominin co-evolution back to the Pliocene. Journal of Human Evolution, Volume 79 . pp. 150-157. doi:10.1016/j.jhevol.2014.10.014

Allwood, James William, Williams, Alex, Uthe, Henriette, van Dam, Nicole M., Mur, Luis A. J., Grant, Murray R. and Pétriacq, Pierre (2021) Unravelling plant responses to stress—the importance of targeted and untargeted metabolomics. Metabolites, 11 (8). e558. doi:10.3390/metabo11080558

Ambagtsheer, Frederike, Haase‐Kromwijk, Bernadette, Dor, Frank J. M. F., Moorlock, Greg, Citterio, Franco, Berney, Thierry and Massey, Emma K. (2020) Global kidney exchange : opportunity or exploitation? An ELPAT/ESOT appraisal. Transplant International, 33 (9). pp. 989-998. doi:10.1111/tri.13630

Amoateng, Patrick, Tagoe, Thomas A., Karikari, Thomas K., Kukuia, Kennedy K. E., Osei-Safo, Dorcas, Woode, Eric, Frenguelli, Bruno G. and Kombian, Samuel B. (2021) Synedrella nodiflora extract depresses excitatory synaptic transmission and chemically-induced in vitro seizures in the rat hippocampus. Frontiers in Pharmacology, 12 . 610025. doi:10.3389/fphar.2021.610025

Amourda, Christopher and Saunders, Timothy E. (2020) The mirtron miR-1010 functions in concert with its host gene SKIP to balance elevation of nAcRβ2. Scientific Reports, 10 (1). 1688. doi:10.1038/s41598-020-58655-7

Andersson, Robert, Kroon, Tobias, Almquist, Joachim, Jirstrand, Mats, Oakes, Nicholas D., Evans, Neil D., Chappel, Michael J. and Gabrielsson, Johan (2017) Modeling of free fatty acid dynamics : insulin and nicotinic acid resistance under acute and chronic treatments. Journal of Pharmacokinetics and Pharmacodynamics, 44 (3). pp. 203-222. doi:10.1007/s10928-017-9512-6

(2020) FKBPL-based peptide, ALM201, targets angiogenesis and cancer stem cells in ovarian cancer. British Journal of Cancer, 122 . pp. 361-371. doi:10.1038/s41416-019-0649-5

Ansell, T. Bertie, Curran, Luke, Horrell, Michael R., Pipatpolkai, Tanadet, Letham, Suzanne C., Song, Wanling, Siebold, Christian, Stansfeld, Phillip J., Sansom, Mark S. P. and Corey, Robin A. (2021) Relative affinities of protein–cholesterol interactions from equilibrium molecular dynamics simulations. Journal of Chemical Theory and Computation, 17 (10). pp. 6548-6558. doi:10.1021/acs.jctc.1c00547

Anspach, Laura, Unger, Ronald E., Brochhausen, Christoph, Gibson, Matthew I., Klok, Harm-Anton, Kirkpatrick, C. James and Freese, Christian (2016) Impact of polymer-modified gold nanoparticles on brain endothelial cells : exclusion of endoplasmic reticulum stress as a potential risk factor. Nanotoxicology, 10 (9). pp. 1341-1350. doi:10.1080/17435390.2016.1214761

Antunez-Sanchez, Javier, Naish, Matthew, Ramirez-Prado, Juan Sebastian, Ohno, Sho, Huang, Ying, Dawson, Alexander, Opassathian, Korawit, Manza-Mianza, Deborah, Ariel, Federico, Raynaud, Cécile, Wibowo, Anjar, Daron, Josquin, Ueda, Minako, Latrasse, David , Slotkin, R. Keith, Weigel, Detlef, Benhamed, Moussa and Gutierrez-Marcos, José F. (2020) A new role for histone demethylases in the maintenance of plant genome integrity. eLife, 9 . e58533. doi:10.7554/elife.58533

UK GARFIELD Investigators, GARFIELD Steering Committee (Including: Apenteng, Patricia N., Murray, Ellen T., Holder, Roger L., Hobbs, Richard F. D. and Fitzmaurice, David A.). (2013) An international longitudinal registry of patients with atrial fibrillation at risk of stroke (GARFIELD) : the UK protocol. BMC Cardiovascular Disorders, 13 . 31. doi:https://doi.org/10.1186/1471-2261-13-31

Appanah, Rowin, Lones, E. C., Aiello, U., Libri, D. and De Piccoli, Giacomo (2020) Sen1 is recruited to replication forks via Ctf4 and Mrc1 and promotes genome stability. Cell Reports, 30 (7). P2094-2105.E9. doi:10.1016/j.celrep.2020.01.087

Arakawa, Takatoshi, Kobayashi-Yurugi, Takami, Alguel, Yilmaz, Iwanari, Hiroko, Hatae, Hinako, Iwata, Momi, Abe, Yoshito, Hino, Tomoya, Ikeda-Suno, Chiyo, Kuma, Hiroyuki, Kang, Dongchon, Murata, Takeshi, Hamakubo, Takao, Cameron, Alexander, Kobayashi, Takuya, Hamasaki, Naotaka and Iwata, So (2015) Crystal structure of the anion exchanger domain of human erythrocyte band 3. Science, 350 (6261). pp. 680-684. doi:10.1126/science.aaa4335

Arasaradnam, Ramesh P., Khoo, K. T. J., Bradburn, Mike, Mathers, John C. and Kelly, S. B. (2010) DNA methylation of ESR-1 and N-33 in colorectal mucosa of patients with Ulcerative Colitis (UC). Epigenetics, Vol.5 (No.5). pp. 422-426.

Arasaradnam, Ramesh P., Pharaoh, Mark W., Williams, Geraint J., Nwokolo, Chuka U., Bardhan, Karna Dev and Kumar, Sudhesh (2009) Colonic fermentation – more than meets the nose. Medical Hypotheses, Vol.73 (No.5). pp. 753-756. doi:10.1016/j.mehy.2009.04.027

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Arduini, Arduino, Bonomini, Mario and Zammit, Victor A. (2016) Defining the potential antidepressant mode of action of acetyl-L-carnitine. Proceedings of the National Academy of Sciences of the United States of America, 113 (39). E5698-E5699. doi:10.1073/pnas.1612025113

Armoiry, Xavier, Cummins, Ewen, Connock, M., Metcalfe, Andrew J., Royle, Pamela, Johnston, Rhona, Rodrigues, Jeremy, Waugh, Norman and Mistry, Hema (2019) Autologous chondrocyte implantation with chondrosphere for treating articular cartilage defects in the knee : an evidence review group perspective of a NICE single technology appraisal. PharmacoEconomics, 37 . pp. 879-886. doi:10.1007/s40273-018-0737-z

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Awasthi, Shalini, Gupta, Shalini, Tripathi, Ravi and Nair, Nisanth N. (2018) Mechanism and kinetics of Aztreonam hydrolysis catalyzed by class-C β-lactamase : a temperature-accelerated sliced sampling study. The Journal of Physical Chemistry B, 122 (15). pp. 4299-4308. doi:10.1021/acs.jpcb.8b01287

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Baker, Alexander N., Congdon, Thomas R., Richards, Sarah-Jane, Georgiou, Panagiotis G., Walker, Marc, Dedola, Simone, Field, Robert A. and Gibson, Matthew I. (2022) End-functionalized poly(vinylpyrrolidone) for ligand display in lateral flow device test lines. ACS Polymers Au, 2 (2). pp. 69-79. doi:10.1021/acspolymersau.1c00032

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Ball, Lauren E., Riley, Liam J., Hadasha, Waled, Pfukwa, Rueben, Smith, Corinne J., Dafforn, Timothy R. and Klumperman, Bert (2021) Influence of DIBMA polymer length on lipid nanodisc formation and membrane protein extraction. Biomacromolecules, 22 (2). pp. 763-772. doi:10.1021/acs.biomac.0c01538

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Bannaga, Ayman, Tyagi, Heena, Daulton, Emma, Covington, James A. and Arasaradnam, Ramesh P. (2021) Exploratory study using urinary volatile organic compounds for the detection of hepatocellular carcinoma. Molecules, 26 (9). 2447. doi:10.3390/molecules26092447

Bannon, Christopher, Gallacher, Daniel C., Hanson, Petra, Randeva, Harpal S., Weickert , Martin and Barber, Thomas M. (2020) Systematic review and meta-analysis of the metabolic effects of modified-release hydrocortisone versus standard glucocorticoid replacement therapy in adults with adrenal insufficiency. Clinical Endocrinology, 93 (6). pp. 637-651. doi:10.1111/cen.14275

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