Journal Article

Abbasi, Wajid Arshad, Asif, Amina, Ben-Hur, Asa and Minhas, Fayyaz ul Amir Afsar (2018) Learning protein binding affinity using privileged information. BMC Bioinformatics, 19 (1). 425. doi:10.1186/s12859-018-2448-z ISSN 1471-2105.

Abbasi, Wajid Arshad, Asiff, Amina, Andleeb, Saiqa and Minhas, Fayyaz ul Amir Afsar (2017) CaMELS : In silicoprediction of calmodulin binding proteins and their binding sites. Proteins: Structure, Function, and Bioinformatics, 85 (9). pp. 1724-1740. doi:10.1002/prot.25330 ISSN 0887-3585.

Abbasi, Wajid Arshad and Minhas, Fayyaz ul Amir Afsar (2016) Issues in performance evaluation for host–pathogen protein interaction prediction. Journal of Bioinformatics and Computational Biology, 14 (3). 1650011. doi:10.1142/S0219720016500116 ISSN 0219-7200.

Abbasi, Wajid Arshad, Yaseen, Adiba, Hassan, Fahad Ul, Andleeb, Saiqa and Minhas, Fayyaz ul Amir Afsar (2020) ISLAND: in-silico proteins binding affinity prediction using sequence information. BioData Mining, 13 (1). 20. doi:10.1186/s13040-020-00231-w ISSN 1756-0381.

Abiola, Temitope T., Auckloo, Nazia, Woolley, Jack Matthew, Corre, Christophe, Poigny, Stéphane and Stavros, Vasilios G. (2021) Unravelling the photoprotection properties of garden cress sprout extract. Molecules, 26 (24). e7631. doi:10.3390/molecules26247631 ISSN 1420-3049.

(2019) Sharing data from molecular simulations. Journal of Chemical Information and Modeling, 59 (10). pp. 4093-4099. doi:10.1021/acs.jcim.9b00665 ISSN 1549-9596.

Achtman, Mark and Zhou, Zhemin (2020) Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on Streptococcus mutans and Streptococcus sobrinus. Philosophical Transactions of the Royal Society B: Biological Sciences, 375 (1812). 20190573. doi:10.1098/rstb.2019.0573 ISSN 0962-8436.

Adaikalakoteswari, Antonysunil, Finer, Sarah, Voyias, Philip D., McCarthy, Ciara M., Vatish, Manu, Moore, Jonathan D., Smart-Halajko, Melissa, Bawazeer, Nahla M., Al-Daghri, Nasser M., McTernan, P. G., Kumar, Sudhesh, Hitman, Graham A., Saravanan, Ponnusamy and Tripathi, Gyanendra (2015) Vitamin B12 insufficiency induces cholesterol biosynthesis by limiting s-adenosylmethionine and modulating the methylation of SREBF1 and LDLR genes. Clinical Epigenetics, Volume 7 (Number 1). pp. 1-14. Article number 14. doi:10.1186/s13148-015-0046-8 ISSN 1868-7075.

Adelman, James S., Marquis, Suzanne J. and Sabatos-DeVito, Maura G. (2010) Letters in words are read simultaneously, not in left-to-right sequence. Psychological Science, Vol.21 (No.12). pp. 1799-1801. doi:10.1177/0956797610387442 ISSN 0956-7976.

Adib, Rozita, Montgomery, Jessica, Atherton, Joseph, O'Regan, Laura, Richards, Mark W., Straatman, Kees, Roth, Daniel, Straube, Anne, Bayliss, Richard, Moores, Carolyn and Fry, Andrew M. (2019) Mitotic phosphorylation by NEK6 and NEK7 reduces the microtubule affinity of EML4 to promote chromosome congression. Science Signalling, 12 (594). eaaw2939. doi:10.1126/scisignal.aaw2939 ISSN 1937-9145.

(2023) Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins. Nature Methods, 20 . pp. 523-535. doi:10.1038/s41592-023-01807-0 ISSN 1548-7091.

Aguiar, M., Andronis, L. (Lazaros) , Pallan, M., Högler , W. and Frew, E. (2020) The economic case for prevention of population vitamin D deficiency : a modelling study using data from England and Wales. European Journal of Clinical Nutrition, 74 . pp. 825-833. doi:10.1038/s41430-019-0486-x ISSN 0954-3007.

Ahmad, Ashfaq, Georgiou, Panagiotis G., Pancaro, Alessia, Hasan, Muhammad, Nelissen, Inge and Gibson, Matthew I. (2022) Polymer-tethered glycosylated gold nanoparticles recruit sialylated glycoproteins into their protein corona, leading to off-target lectin binding. Nanoscale, 14 (36). pp. 13261-13273. doi:10.1039/D2NR01818G ISSN 2040-3364.

Akman, Ozgur E., Rand, D. A. (David A.), Brown, Paul E. and Millar, A. J. (Andrew J.) (2010) Robustness from flexibility in the fungal circadian clock. BMC Systems Biology, Vol.4 (No.88). doi:10.1186/1752-0509-4-88 ISSN 1752-0509.

Al-Attas, Omar S., Al-Daghri, Nasser M., Alokail, Majed S., Alkharfy, Khalid M., Alfadda, Assim, McTernan, P. G. (Philip G.), Gibson, Greg, Sabico, Shaun and Chrousos, George P. (2012) Circulating leukocyte telomere length is highly heritable among families of Arab descent. BMC Medical Genetics, Vol.13 (No.1). p. 38. doi:10.1186/1471-2350-13-38 ISSN 1471-2350.

Al-Daghri, Nasser M., Al-Attas, Omar S., Alokail, Majed S., Alkharfy, Khalid M., Yakout, Sobhy M., Sabico, Shaun, Gibson, Greg, Chrousos, George P. and Kumar, Sudhesh (2011) Parent-offspring transmission of adipocytokine levels and their associations with metabolic traits. PL o S One, Vol.6 (No.4). e18182 . doi:10.1371/journal.pone.0018182 ISSN 1932-6203.

Al-Mawali, Adhra, D'Elia, Lanfranco, Jayapal, Sathish Kumar, Morsi, Magdi, Al-Shekaili, Waleed Nasser, Pinto, Avinash D., Al-Kharusi, Hilal, Al-Balushi, Zainab, Idikula, John, Al-Harrasi, Ayaman and Cappuccio, Francesco (2020) A national survey to estimate sodium and potassium intake, and knowledge attitudes and behaviours towards salt consumption of adults in the Sultanate of Oman. BMJ Open, 10 (10). e037012. doi:10.1136/bmjopen-2020-037012 ISSN 2044-6055.

Al-Musharaf, Sara, Fouda, Mona A., Turkestani, Iqbal Z., Al-Ajlan, Abdulrahman, Sabico, Shaun, Alnaami, Abdullah M., Wani, Kaiser, Hussain, Syed Danish, Alraqebah, Buthaynah, Al-Serehi, Amal, Alshingetti, Naemah M., Al-Daghri, Nasser, McTernan, Philip G, Wimalawansa, Sunil J. and Saravanan, Ponnusamy (2018) Vitamin D deficiency prevalence and predictors in early pregnancy among Arab women. Nutrients, 10 (4). 489. doi:10.3390/nu10040489 ISSN 2072-6643.

Al-Othman, Abdulaziz, Al-Musharaf, Sara, Al-Daghri, Nasser M., Yakout, Sobhy M., Alkharfy, Khalid M., Al-Saleh, Yousef, Al-Attas, Omar S., Alokail, Majed S., Moharram, Osama, Sabico, Shaun, Kumar, Sudhesh and Chrousos, George P. (2012) Tea and coffee consumption in relation to vitamin D and calcium levels in Saudi adolescents. Nutrition Journal, Vol.11 (No.1). Article number 56. doi:10.1186/1475-2891-11-56 ISSN 1475-2891.

Al-Salihi, Suhad A. A. and Alberti, Fabrizio (2021) Naturally occurring terpenes : a promising class of organic molecules to address influenza pandemics. Natural Products and Bioprospecting, 11 . pp. 405-419. doi:10.1007/s13659-021-00306-z ISSN 2192-2195.

Al-Sandaqchi, Alaa T., Brignell, Chris, Collingwood, Joanna F., Geraki, Kalotina, Mirkes, Evgeny M., Kong, Kenny, Castellanos, Marcos, May, Sean T., Stevenson, Carl W. and Elsheikha, Hany M. (2018) Metallome of cerebrovascular endothelial cells infected with Toxoplasma gondii using μ-XRF imaging and inductively coupled plasma mass spectrometry. Metallomics, 10 (10). pp. 1401-1414. doi:10.1039/c8mt00136g ISSN 1756-5901.

Al-Yazeedi, Talal, Xu, Emily L., Kaur, Jasmin, Shakes, Diane and Pires da Silva, André (2022) Lagging X chromatids specify the orientation of asymmetric organelle partitioning in XX spermatocytes of Auanema rhodensis. Genetics, 222 (4). iyac159. doi:10.1093/genetics/iyac159 ISSN 0016-6731.

AlRachid, H., Mones, Letif and Ortner, Christoph (2018) Some remarks on preconditioning molecular dynamics. SMAI Journal of Computational Mathematics, 4 . pp. 57-80. doi:10.5802/smai-jcm.29 ISSN 2426-8399.

Alam, Mohammad T., Olin-Sandoval, Viridiana, Stincone, Anna, Keller, Markus A., Zelezniak, Aleksej, Luisi, Ben and Ralser, Markus (2017) The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization. Nature Communications, 8 . 16018. doi:10.1038/ncomms16018 ISSN 2041-1723.

Alawo, Deborah O. A., Tahir, Tariq A., Fischer, Marlies, Bates, Declan, Amirova, Svetlana R. and Brindle, Nicholas P. J. (2017) Regulation of angiopoietin signalling by soluble Tie2 ectodomain and engineered ligand trap. Scientific Reports, 7 (1). 3658. doi:10.1038/s41598-017-03981-6 ISSN 2045-2322.

Alcántara-Alonso, Viridiana, Dallmann, Robert, Lehnert, Hendrik, de Gortari, Patricia and Grammatopoulos, Dimitris K. (2023) CRH-R2 signalling modulates feeding and circadian gene expression in hypothalamic mHypoA-2/30 neurons. Frontiers in Endocrinology, 14 . 1266081. doi:10.3389/fendo.2023.1266081 ISSN 1664-2392.

Alford, Justine E., Gumbs, Jade and Anderson, Emma C. (2014) A new role for clathrin adaptor proteins 1 and 3 in lipoplex trafficking. PLoS ONE, Volume 9 (Number 3). Article number e91429. doi:10.1371/journal.pone.0091429 ISSN 1932-6203.

Algethami, Norah, Sadeghi, Hatef, Sangtarash, Sara and Lambert, Colin J. (2018) The conductance of porphyrin-based molecular nanowires increases with length. Nano Letters, 18 (7). pp. 4482-4486. doi:10.1021/acs.nanolett.8b01621 ISSN 1530-6984.

Alguel, Y., Cameron, Alexander, Diallinas, G. and Byrne, B. (2016) Transporter oligomerization : form and function. Biochemical Society Transactions, 44 (6). pp. 1737-1744. doi:10.1042/BST20160217 ISSN 0300-5127.

Alhujaily, Muhanad Musaad M., Abbas, Hafsa, Xue, Mingzhan, de la Fuente, Alberto, Rabbani, Naila and Thornalley, Paul J. (2021) Studies of glyoxalase 1-linked multidrug resistance reveal glycolysis-derived reactive metabolite, methylglyoxal, is a common contributor in cancer chemotherapy targeting the spliceosome. Frontiers in Oncology, 11 . 748698. doi:10.3389/fonc.2021.748698 ISSN 2234-943X.

Alhusaini, S., McGee, K. C., Harte, A. L., McTernan, P. G., Kumar, Sudhesh and Tripathi, Gyanendra (2010) Lipopolysaccharide, high glucose and saturated fatty acids induce endoplasmic reticulum stress in cultured primary human adipocytes : salicylate alleviates this stress. Biochemical and Biophysical Research Communications, Vol.397 (No.3). pp. 472-478. doi:10.1016/j.bbrc.2010.05.138 ISSN 0006-291X.

Alic, Nazif, Andrews, T. Daniel, Giannakou, Maria E., Papatheodorou, Irene, Slack, Cathy, Hoddinott, Matthew P., Cochemé, Helena M., Schuster, Eugene F., Thornton, Janet M. and Partridge, Linda (2011) Genome‐wide dFOXO targets and topology of the transcriptomic response to stress and insulin signalling. Molecular Systems Biology, 7 (1). 502. doi:10.1038/msb.2011.36 ISSN 1744-4292.

Alic, Nazif, Tullet, Jennifer M., Niccoli, Teresa, Broughton, Susan, Hoddinott, Matthew P., Slack, Cathy, Gems, David and Partridge, Linda (2014) Cell-nonautonomous effects of dFOXO/DAF-16 in aging. Cell Reports, 6 (4). pp. 608-616. doi:10.1016/j.celrep.2014.01.015 ISSN 2211-1247.

Alkhalaf, Lona M., Barry, Sarah M., Rea, Dean, Gallo, Angelo, Griffiths, Daniel, Lewandowski, Józef R., Fülöp, Vilmos and Challis, Gregory L. (2019) Binding of distinct substrate conformations enables hydroxylation of remote sties in thaxtomin D by cytochrome P450 TxtC. Journal of the American Chemical Society, 141 (1). pp. 216-222. doi:10.1021/jacs.8b08864 ISSN 0002-7863.

Allaby, Robin G., Kistler, Logan, Gutaker, Rafał M., Ware, Roselyn, Kitchen, James, Smith, Oliver and Clarke, Andrew C. (2015) Archaeogenomic insights into the adaptation of plants to the human environment : pushing plant–hominin co-evolution back to the Pliocene. Journal of Human Evolution, Volume 79 . pp. 150-157. doi:10.1016/j.jhevol.2014.10.014 ISSN 0047-2484.

Allwood, James William, Williams, Alex, Uthe, Henriette, van Dam, Nicole M., Mur, Luis A. J., Grant, Murray R. and Pétriacq, Pierre (2021) Unravelling plant responses to stress—the importance of targeted and untargeted metabolomics. Metabolites, 11 (8). e558. doi:10.3390/metabo11080558 ISSN 2218-1989.

Ambagtsheer, Frederike, Haase‐Kromwijk, Bernadette, Dor, Frank J. M. F., Moorlock, Greg, Citterio, Franco, Berney, Thierry and Massey, Emma K. (2020) Global kidney exchange : opportunity or exploitation? An ELPAT/ESOT appraisal. Transplant International, 33 (9). pp. 989-998. doi:10.1111/tri.13630 ISSN 0934-0874.

Amoateng, Patrick, Tagoe, Thomas A., Karikari, Thomas K., Kukuia, Kennedy K. E., Osei-Safo, Dorcas, Woode, Eric, Frenguelli, Bruno G. and Kombian, Samuel B. (2021) Synedrella nodiflora extract depresses excitatory synaptic transmission and chemically-induced in vitro seizures in the rat hippocampus. Frontiers in Pharmacology, 12 . 610025. doi:10.3389/fphar.2021.610025 ISSN 1663-9812.

Amourda, Christopher and Saunders, Timothy E. (2020) The mirtron miR-1010 functions in concert with its host gene SKIP to balance elevation of nAcRβ2. Scientific Reports, 10 (1). 1688. doi:10.1038/s41598-020-58655-7 ISSN 2045-2322.

Andersson, Robert, Kroon, Tobias, Almquist, Joachim, Jirstrand, Mats, Oakes, Nicholas D., Evans, Neil D., Chappel, Michael J. and Gabrielsson, Johan (2017) Modeling of free fatty acid dynamics : insulin and nicotinic acid resistance under acute and chronic treatments. Journal of Pharmacokinetics and Pharmacodynamics, 44 (3). pp. 203-222. doi:10.1007/s10928-017-9512-6 ISSN 1567-567X.

Anker, Stefan D., Khan, Muhammad Shahzeb, Butler, Javed, Ofstad, Anne Pernille, Peil, Barbara, Pfarr, Egon, Doehner, Wolfram, Sattar, Naveed, Coats, Andrew J. S., Filippatos, Gerasimos, Ferreira, João Pedro, Zannad, Faiez, Pocock, Stuart and Packer, Milton (2023) Weight change and clinical outcomes in heart failure with reduced ejection fraction : insights from EMPEROR‐Reduced. European Journal of Heart Failure, 25 (1). pp. 117-127. doi:10.1002/ejhf.2728 ISSN 1388-9842.

(2020) FKBPL-based peptide, ALM201, targets angiogenesis and cancer stem cells in ovarian cancer. British Journal of Cancer, 122 . pp. 361-371. doi:10.1038/s41416-019-0649-5 ISSN 0007-0920.

Ansell, T. Bertie, Curran, Luke, Horrell, Michael R., Pipatpolkai, Tanadet, Letham, Suzanne C., Song, Wanling, Siebold, Christian, Stansfeld, Phillip J., Sansom, Mark S. P. and Corey, Robin A. (2021) Relative affinities of protein–cholesterol interactions from equilibrium molecular dynamics simulations. Journal of Chemical Theory and Computation, 17 (10). pp. 6548-6558. doi:10.1021/acs.jctc.1c00547 ISSN 1549-9626.

Anspach, Laura, Unger, Ronald E., Brochhausen, Christoph, Gibson, Matthew I., Klok, Harm-Anton, Kirkpatrick, C. James and Freese, Christian (2016) Impact of polymer-modified gold nanoparticles on brain endothelial cells : exclusion of endoplasmic reticulum stress as a potential risk factor. Nanotoxicology, 10 (9). pp. 1341-1350. doi:10.1080/17435390.2016.1214761 ISSN 1743-5390.

Antunez-Sanchez, Javier, Naish, Matthew, Ramirez-Prado, Juan Sebastian, Ohno, Sho, Huang, Ying, Dawson, Alexander, Opassathian, Korawit, Manza-Mianza, Deborah, Ariel, Federico, Raynaud, Cécile, Wibowo, Anjar, Daron, Josquin, Ueda, Minako, Latrasse, David , Slotkin, R. Keith, Weigel, Detlef, Benhamed, Moussa and Gutierrez-Marcos, José F. (2020) A new role for histone demethylases in the maintenance of plant genome integrity. eLife, 9 . e58533. doi:10.7554/elife.58533 ISSN 2050-084X.

UK GARFIELD Investigators, GARFIELD Steering Committee (Including: Apenteng, Patricia N., Murray, Ellen T., Holder, Roger L., Hobbs, Richard F. D. and Fitzmaurice, David A.). (2013) An international longitudinal registry of patients with atrial fibrillation at risk of stroke (GARFIELD) : the UK protocol. BMC Cardiovascular Disorders, 13 . 31. doi:https://doi.org/10.1186/1471-2261-13-31 ISSN 1471-2261.

Appanah, Rowin, Lones, E. C., Aiello, U., Libri, D. and De Piccoli, Giacomo (2020) Sen1 is recruited to replication forks via Ctf4 and Mrc1 and promotes genome stability. Cell Reports, 30 (7). P2094-2105.E9. doi:10.1016/j.celrep.2020.01.087 ISSN 2211-1247.

Arakawa, Takatoshi, Kobayashi-Yurugi, Takami, Alguel, Yilmaz, Iwanari, Hiroko, Hatae, Hinako, Iwata, Momi, Abe, Yoshito, Hino, Tomoya, Ikeda-Suno, Chiyo, Kuma, Hiroyuki, Kang, Dongchon, Murata, Takeshi, Hamakubo, Takao, Cameron, Alexander, Kobayashi, Takuya, Hamasaki, Naotaka and Iwata, So (2015) Crystal structure of the anion exchanger domain of human erythrocyte band 3. Science, 350 (6261). pp. 680-684. doi:10.1126/science.aaa4335 ISSN 0036-8075.

Arasaradnam, Ramesh P., Khoo, K. T. J., Bradburn, Mike, Mathers, John C. and Kelly, S. B. (2010) DNA methylation of ESR-1 and N-33 in colorectal mucosa of patients with Ulcerative Colitis (UC). Epigenetics, Vol.5 (No.5). pp. 422-426. ISSN 1559-2294.

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Armengol, Monica, Zoulias, Ioannis D., Gibbons, Robin S., McCarthy, Ian, Andrews, Brian J., Harwin, William S. and Holderbaum, William (2022) The effect of functional electrical stimulation-assisted posture-shifting in bone mineral density : case series-pilot study. Spinal Cord Series and Cases, 8 (1). 60. doi:10.1038/s41394-022-00523-9 ISSN 2058-6124.

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Awasthi, Shalini, Gupta, Shalini, Tripathi, Ravi and Nair, Nisanth N. (2018) Mechanism and kinetics of Aztreonam hydrolysis catalyzed by class-C β-lactamase : a temperature-accelerated sliced sampling study. The Journal of Physical Chemistry B, 122 (15). pp. 4299-4308. doi:10.1021/acs.jpcb.8b01287 ISSN 1520-6106.

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Bailey, Trisha L., Hernandez-Fernaud, Juan Ramon and Gibson, Matthew I. (2021) Proline pre-conditioning of cell monolayers increases post-thaw recovery and viability by distinct mechanisms to other osmolytes. RSC Medicinal Chemistry, 12 (6). pp. 982-993. doi:10.1039/D1MD00078K ISSN 2632-8682.

Bailey, Trisha L., Stubbs, Christopher D., Murray, Kathryn, Tomás, Ruben M. F., Otten, Lucienne and Gibson, Matthew I. (2019) Synthetically scalable poly(ampholyte) which dramatically enhances cellular cryopreservation. Biomacromolecules, 20 (8). pp. 3104-3114. doi:10.1021/acs.biomac.9b00681 ISSN 1525-7797.

Bailo, Rebeca, Radhakrishnan, Anjana, Singh, Albel, Nakaya, Makoto, Fujiwara, Nagatoshi and Bhatt, Apoorva (2022) The mycobacterial desaturase DesA2 is associated with mycolic acid biosynthesis. Scientific Reports, 12 (1). 6943. doi:10.1038/s41598-022-10589-y ISSN 2045-2322.

Baker, Alexander N., Congdon, Thomas R., Richards, Sarah-Jane, Georgiou, Panagiotis G., Walker, Marc, Dedola, Simone, Field, Robert A. and Gibson, Matthew I. (2022) End-functionalized poly(vinylpyrrolidone) for ligand display in lateral flow device test lines. ACS Polymers Au, 2 (2). pp. 69-79. doi:10.1021/acspolymersau.1c00032 ISSN 2694-2453.

Baker, Alexander N., Richards, Sarah-Jane, Pandey, Sarojini, Guy, Collette S., Ahmad, Ashfaq, Hasan, Muhammad, Biggs, Caroline I., Georgiou, Panagiotis G., Zwetsloot, Alexander J., Straube, Anne, Dedola, Simone, Field, Robert A., Anderson, Neil R., Walker, Marc, Grammatopoulos, Dimitris and Gibson, Matthew I. (2021) Glycan-based flow-through device for the detection of SARS-COV-2. ACS Sensors, 6 (10). pp. 3696-3705. doi:10.1021/acssensors.1c01470 ISSN 2379-3694.

Baker, Lewis A. and Habershon, Scott (2015) Robustness, efficiency, and optimality in the Fenna-Matthews-Olson photosynthetic pigment-protein complex. The Journal of Chemical Physics, 143 (10). 105101. doi:10.1063/1.4930110 ISSN 0021-9606.

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