Journal Article

Simcox, Lee J., Pereira, Rui P. A., Wellington, E. M. H. and Macpherson, Julie V. (2019) Boron doped diamond as a low biofouling material in aquatic environments : assessment of pseudomonas aeruginosa biofilm formation. ACS Applied Materials and Interfaces, 11 . 28. doi:10.1021/acsami.9b07245 ISSN 1944-8244.

Pereira, Rui P. A., Peplies, Jörg, Jörg, Douglas, Brettar, Ingrid and Höfle, Manfred G. (2018) Pseudomonas-specific NGS assay provides insight into abundance and dynamics of Pseudomonas species including P. aeruginosa in a cooling tower. Frontiers in Microbiology, 9 . 1958. doi:10.3389/fmicb.2018.01958 ISSN 1664-302X.

Pereira, Rui P. A., Peplies, Jörg, Höfle, Manfred G. and Brettar, Ingrid (2017) Bacterial community dynamics in a cooling tower with emphasis on pathogenic bacteria and Legionella s pecies using universal and genus-specific deep sequencing. Water Research, 122 . pp. 363-376. doi:10.1016/j.watres.2017.06.011 ISSN 0043-1354.

Vezzulli, L., Grande, C., Tassistro, G., Brettar, I., Höfle, M. G., Pereira, Rui P. A., Mushi, D., Pallavicini, A., Vassallo, P. and Pruzzo, C. (2017) Whole-genome enrichment provides deep insights into vibrio cholerae metagenome from an African river. Microbial Ecology, 73 (3). pp. 734-738. doi:10.1007/s00248-016-0902-x ISSN 0095-3628.

Pereira, Rui P. A., Peplies, Jörg, Brettar, Ingrid and Höfle, Manfred G. (2017) Development of a genus-specific next generation sequencing approach for sensitive and quantitative determination of the Legionella microbiome in freshwater systems. BMC Microbiology, 17 (1). 79. doi:10.1186/s12866-017-0987-5 ISSN 1471-2180.

Pereira, Rui P. A., Peplies, Jörg, Brettar, Ingrid and Höfle, Manfred G. (2017) Development of a genus-specific next generation sequencing approach for sensitive and quantitative determination of the Legionella microbiome in freshwater systems. BMC Microbiology, 17 (1). 79. doi:10.1186/s12866-017-0987-5 ISSN 1471-2180.

Guerra-Assunção, J. A., Crampin, A. C., Houben, R. M. G. J., Mzembe, T., Mallard, K., Coll, F., Khan, P., Banda, L., Chiwaya, A., Pereira, Rui P. A., McNerney, R., Fine, P. E. M., Parkhill, J., Clark, T. G. and Glynn, J. R. (2015) Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area. eLife, 4 . e05166. doi:10.7554/eLife.05166 ISSN 2050-084X.

Guerra-Assunção, José Afonso, Houben, Rein M. G. J., Crampin, Amelia C., Mzembe, Themba, Mallard, Kim, Coll, Francesc, Khan, Palwasha, Banda, Louis, Chiwaya, Arthur, Pereira, Rui P. A., McNerney, Ruth, Harris, David, Parkhill, Julian, Clark, Taane G. and Glynn, Judith R. (2014) Recurrence due to relapse or reinfection with Mycobacterium tuberculosis : a whole-genome sequencing approach in a large, population-based cohort with a high HIV infection prevalence and active follow-up. Journal of Infectious Diseases, 211 (7). pp. 1154-1163. doi:10.1093/infdis/jiu574 ISSN 0022-1899.

Pereira, Rui P. A., Cole, M. J. and Ison, C. A. (2013) Combination therapy for gonorrhoea : in vitro synergy testing. Journal of Antimicrobial Chemotherapy, 68 (3). pp. 640-643. doi:10.1093/jac/dks449 ISSN 0305-7453.

Florindo, C., Pereira, Rui P. A., Boura, M., Nunes, B., Paulino, A., Gomes, J. P. and Borrego, M. J. (2010) Genotypes and antimicrobial-resistant phenotypes of Neisseria gonorrhoeae in Portugal (2004-2009). Sexually Transmitted Infections, 86 (6). pp. 449-453. doi:10.1136/sti.2010.044321 ISSN 1472-3263.