Journal Article

Simcox, Lee J., Pereira, Rui P. A., Wellington, E. M. H. and Macpherson, Julie V. (2019) Boron doped diamond as a low biofouling material in aquatic environments : assessment of pseudomonas aeruginosa biofilm formation. ACS Applied Materials and Interfaces, 11 . 28. doi:10.1021/acsami.9b07245

Pereira, Rui P. A., Peplies, Jörg, Jörg, Douglas, Brettar, Ingrid and Höfle, Manfred G. (2018) Pseudomonas-specific NGS assay provides insight into abundance and dynamics of Pseudomonas species including P. aeruginosa in a cooling tower. Frontiers in Microbiology, 9 . 1958. doi:10.3389/fmicb.2018.01958

Pereira, Rui P. A., Peplies, Jörg, Höfle, Manfred G. and Brettar, Ingrid (2017) Bacterial community dynamics in a cooling tower with emphasis on pathogenic bacteria and Legionella s pecies using universal and genus-specific deep sequencing. Water Research, 122 . pp. 363-376. doi:10.1016/j.watres.2017.06.011

Vezzulli, L., Grande, C., Tassistro, G., Brettar, I., Höfle, M. G., Pereira, Rui P. A., Mushi, D., Pallavicini, A., Vassallo, P. and Pruzzo, C. (2017) Whole-genome enrichment provides deep insights into vibrio cholerae metagenome from an African river. Microbial Ecology, 73 (3). pp. 734-738. doi:10.1007/s00248-016-0902-x

Pereira, Rui P. A., Peplies, Jörg, Brettar, Ingrid and Höfle, Manfred G. (2017) Development of a genus-specific next generation sequencing approach for sensitive and quantitative determination of the Legionella microbiome in freshwater systems. BMC Microbiology, 17 (1). 79. doi:10.1186/s12866-017-0987-5

Pereira, Rui P. A., Peplies, Jörg, Brettar, Ingrid and Höfle, Manfred G. (2017) Development of a genus-specific next generation sequencing approach for sensitive and quantitative determination of the Legionella microbiome in freshwater systems. BMC Microbiology, 17 (1). 79. doi:10.1186/s12866-017-0987-5

Guerra-Assunção, J. A., Crampin, A. C., Houben, R. M. G. J., Mzembe, T., Mallard, K., Coll, F., Khan, P., Banda, L., Chiwaya, A., Pereira, Rui P. A., McNerney, R., Fine, P. E. M., Parkhill, J., Clark, T. G. and Glynn, J. R. (2015) Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area. eLife, 4 . e05166. doi:10.7554/eLife.05166

Guerra-Assunção, José Afonso, Houben, Rein M. G. J., Crampin, Amelia C., Mzembe, Themba, Mallard, Kim, Coll, Francesc, Khan, Palwasha, Banda, Louis, Chiwaya, Arthur, Pereira, Rui P. A., McNerney, Ruth, Harris, David, Parkhill, Julian, Clark, Taane G. and Glynn, Judith R. (2014) Recurrence due to relapse or reinfection with Mycobacterium tuberculosis : a whole-genome sequencing approach in a large, population-based cohort with a high HIV infection prevalence and active follow-up. Journal of Infectious Diseases, 211 (7). pp. 1154-1163. doi:10.1093/infdis/jiu574

Pereira, Rui P. A., Cole, M. J. and Ison, C. A. (2013) Combination therapy for gonorrhoea : in vitro synergy testing. Journal of Antimicrobial Chemotherapy, 68 (3). pp. 640-643. doi:10.1093/jac/dks449

Florindo, C., Pereira, Rui P. A., Boura, M., Nunes, B., Paulino, A., Gomes, J. P. and Borrego, M. J. (2010) Genotypes and antimicrobial-resistant phenotypes of Neisseria gonorrhoeae in Portugal (2004-2009). Sexually Transmitted Infections, 86 (6). pp. 449-453. doi:10.1136/sti.2010.044321