The Library
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Number of items: 11.
Minas, Giorgos, Jenkins, Dafyd J., Rand, D. A. (David A.) and Finkenstรคdt, Bรคrbel (2017) Inferring transcriptional logic from multiple dynamic experiments. Bioinformatics, 33 (21). pp. 3437-3444. doi:10.1093/bioinformatics/btx407 ISSN 1367-4803.
Walker, Liam, Boddington, Clare, Jenkins, Dafyd J., Wang, Ying, Gronlund, Jesper T., Hulsmans, J., Kumar, Sanjeev, Patel, Dhaval, Moore, Jonathan D., Carter, Anthony, Samavedam, Siva, Bonomo, Giovanni, Hersh, David S., Coruzzi, Gloriaโ, Burroughs, Nigel John and Gifford, Miriam L. (2017) Changes in gene expression in space and time orchestrate environmentally mediated shaping of root architecture. The Plant Cell, 29 (10). pp. 2393-2412. doi:10.1105/tpc.16.00961 ISSN 1040-4651.
Minas, Giorgos, Momiji, Hiroshi, Jenkins, Dafyd J., Costa, Maria J. (Maria Joรฃo), Rand, David A. and Finkenstรคdt, Bรคrbel (2017) ReTrOS : a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data. BMC Bioinformatics, 18 (316). doi:10.1186/s12859-017-1695-8 ISSN 1471-2105.
Bechtold, Ulrike, Penfold, Christopher A., Jenkins, Dafyd J., Legaie, Roxane, Moore, Jonathan D., Lawson, Tracy, Matthews, Jack S.A., Vialet-Chabrand, Silvere R. M., Baxter, Laura, Subramaniam, Sunitha et al.
(2016)
Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis.
The Plant Cell, 28
(2).
pp. 345-366.
doi:10.1105/tpc.15.00910
ISSN 1040-4651.
Lewis, Laura, Polanskia, Krzysztof, de Torres-Zabala, Marta, Jayaraman, Siddharth, Bowden, Laura, Moore, Jonathan D., Penfold, Christopher A., Jenkins, Dafyd J., Hills, Claire E., Baxter, Laura et al.
(2015)
Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with pseudomonas syringae pv tomato DC3000.
The Plant Cell, 27
(11).
pp. 3038-3064.
doi:10.1105/tpc.15.00471
ISSN 1040-4651.
Polaลski, Krzysztof , Rhodes, Johanna, Hills, Claire E., Zhang, Peijun, Jenkins, Dafyd J., Kiddle, Steven J., Jironkin, Aleksey, Beynon, Jim, Buchanan-Wollaston, Vicky, Ott, Sascha and Denby, Katherine J. (2014) Wigwams : identifying gene modules co-regulated across multiple biological conditions. Bioinformatics, Volume 30 (Number 7). pp. 962-970. doi:10.1093/bioinformatics/btt728 ISSN 1367-4803.
Jenkins, Dafyd J., Finkenstรคdt, Bรคrbel and Rand, D. A. (David A.) (2013) A temporal switch model for estimating transcriptional activity in gene expression. Bioinformatics, Volume 29 (Number 9). pp. 1158-1165. doi:10.1093/bioinformatics/btt111 ISSN 1367-4803.
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
Breeze, Emily, Harrison, Elizabeth, McHattie, Stuart, Hughes, Linda Karen, Hickman, Richard J., Hill, Claire, Kiddle, Steven J., Kim, Youn-sung, Penfold, Christopher A., Jenkins, Dafyd J. et al.
(2011)
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell, The, Vol.23
(No.3).
pp. 873-894.
doi:10.1105/tpc.111.083345
ISSN 1040-4651.
Jenkins, Dafyd J. and Stekel, Dov (2010) De novo evolution of complex, global and hierarchical gene regulatory mechanisms. Journal of Molecular Evolution, Vol.71 (No.2). pp. 128-140. doi:10.1007/s00239-010-9369-4 ISSN 0022-2844.
Jenkins, Dafyd J. and Stekel, Dov J (2010) Stochasticity versus determinism: consequences for realistic gene regulatory network modelling and evolution. Journal of Molecular Evolution, Vol.70 (No.2). pp. 215-231. doi:10.1007/s00239-010-9323-5 ISSN 0022-2844.
This list was generated on Mon May 13 10:25:45 2024 BST.