2020

Zarubiieva, Iuliia and Kulkarni, Vishwesh V. (2020) Software-aided design of idealised programmable nucleic acid circuits. In: Singh, Vijai, (ed.) Advances in Synthetic Biology. Singapore: Springer , pp. 129-151. ISBN 9789811500800

Wheatley, Joseph P., Liyanagedera, Sahan B. W., Amaee, Richard, Sagona, Antonia P. and Kulkarni, Vishwesh V. (2020) Synthetic biology for the rapid, precise and compliant detection of microbes. In: Singh, Vijai, (ed.) Advances in Synthetic Biology. Singapore: Springer, pp. 289-306. ISBN 9789811500800

Zarubiieva, Iuliia, Tseng, Joyun and Kulkarni, Vishwesh V. (2020) Computation of ratios using chemical reactions and DNA strand displacements. In: Ao , S- L. and Gelman , L. and Kim , H. K., (eds.) Transactions on Engineering Technologies. WCE 2018 . Singapore: Springer, pp. 281-295. ISBN 9789813295308

2019

Zarubiieva, Iuliia, Yamnenko, Julia and Kulkarni, Vishwesh V. (2019) Improved computation of natural logarithm using chemical reaction networks. In: 2019 IEEE 2nd Ukraine Conference on Electrical and Computer Engineering (UKRCON), Lviv, Ukraine, 2-6 Jul 2019. Published in: IEEE UKRCON

Liyanagedera, Sahan B. W. , Wheatley, Joseph P., Qian, Zhi-Gang, Sagona, Antonia P., Bai, Feng-Wu, Xiao-Xia, Xia and Kulkarni, Vishwesh V. (2019) Synthetic biology for engineering programmable soft materials [abstract]. UNSPECIFIED. (Unpublished)

Zarubiieva, Iuliia, Phillips, Andrew, Mantellino, Francesca and Kulkarni, Vishwesh V. (2019) A method for compiling arbitrary transfer functions to molecular circuits. ACS Synthetic Biology .

Kulkarni, Vishwesh V., Ye, Weijie, Yu, Xinwu and Qian, Weikang (2019) Machine learning algorithms for robust meta-analysis of gene expressions. ACS Synthetic Biology .

2018

Kulkarni, Vishwesh V. and Bellarykar, Nikhil (2018) Improved predictive models for the IRMA Network using nonlinear optimisation. International Journal of Biotechnology and Bioengineering, 12 (10). 10009684. doi:10.5281/zenodo.1474948

2016

Kulkarni, Vishwesh V. and Raman, Karthik (2016) Fast identification of synthetic lethals using quadratic programming. In: Synthetic Biology UK 2016, Edinburgh, 14-16 Nov 2016. Published in: Synthetic Biology UK 2016

Foo, Mathias, Sawlekar, Rucha, Kulkarni, Vishwesh V. and Bates, Declan (2016) Biologically inspired design of feedback control systems implemented using DNA strand displacement reactions. In: 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Orlando, Florida, 16-20 Aug 2016. Published in: 2016 IEEE 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) ISSN 1558-4615.

Kulkarni, Vishwesh V. and Islam, Fazul (2016) Discrete-time L1 adaptive controller to regulate in vivo protein expressions. In: QSP-UK 1st Exchange Workshop 2016, University of Surrey, 5-7 Sep 2016. Published in: QSP-UK 1st Exchange Workshop 2016

Kulkarni, Vishwesh V., El Menjra, Lina, Carbonell, Pablo and Faulon, Jean-Loup (2016) Integrated predictive genome-scale models to improve the metabolic re-engineering efficiency. In: 8th International Workshop on Bio-Design Automation, Newcastle-upon-Tyne, UK, 16-18 Aug 2016

Jafarnejadsani, Hamidreza, Kim, Jongmin, Hovakimyan, Naira and Kulkarni, Vishwesh V. (2016) Load capacity improvements in transcriptional systems using discrete-time L1-adaptive control. In: 8th International Workshop on Bio-Design Automation, Newcastle-upon-Tyne, UK, 16-18 Aug 2016. Published in: Proceedings of 8th International Workshop on Bio-Design Automation pp. 75-76.

Foo, Mathias, Sawlekar, Rucha, Kim, J., Bates, Declan, Stan, Guy-Bart and Kulkarni, Vishwesh V. (2016) Biomolecular implementation of nonlinear system theoretic operators. In: European Control Conference 2016, Aalborg, Denmark, 29 Jun-1 Jul 2016. Published in: Proceedings of the 15th annual European Control Conference (In Press)

Sawlekar, Rucha, Montefusco, Francesco, Kulkarni, Vishwesh V. and Bates, Declan (2016) Implementing nonlinear feedback controllers using DNA strand displacement reactions. IEEE Transactions on NanoBioscience, 15 (5). pp. 443-454. doi:DOI: 10.1109/TNB.2016.2560764

Gupta, Shabarni, Manubhai, K. P., Kulkarni, Vishwesh V. and Srivastava, Sanjeeva (2016) An overview of innovations and industrial solutions in protein microarray technology. Proteomics, 16 (8). pp. 1297-1308. doi:10.1002/pmic.201500429

2015

Sawlekar, Rucha, Montefusco, Francesco, Kulkarni, Vishwesh V. and Bates, Declan (2015) Biomolecular implementation of a quasi sliding mode feedback controller based on DNA strand displacement reactions. In: 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Milan, Italy, August 25-29, 2015. Published in: Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society pp. 949-952. ISSN DOI: 10.1109/EMBC.2015.7318520.

Lusczek, Elizabeth R., Vincente, Tyrone, Lexcen, Daniel, Kulkarni, Vishwesh V., Mulier, Kristine and Beilman, Greg (2015) Metabolic networks in a porcine model of trauma and hemorrhagic shock demonstrate different control mechanism with carbohydrate pre-feed. BMC Emergency Medicine, 15 (13). pp. 1-7. doi:10.1186/s12873-015-0038-1

2014

Yordanov, Boyan, Kim, Jongmin, Petersen, Rasmus, Shudy, Angelina, Kulkarni, Vishwesh V. and Phillips, Andrew (2014) Computational design of nucleic acid feedback control circuits. ACS Synthetic Biology, 3 (8). pp. 600-616. doi:10.1021/sb400169s

Kulkarni, Vishwesh V. and Stan, Guy-Bart and Raman, Karthik, eds. (2014) A systems theoretic approach to systems and synthetic biology I : models and system characterizations. Netherlands: Springer Verlag. ISBN 9789401790413

Kulkarni, Vishwesh V. and Stan, Guy-Bart and Raman, Karthik, eds. (2014) A systems theoretic approach to systems and synthetic biology II : analysis and design of cellular systems. London, UK: Springer Verlag. ISBN 9789401790475

Kulkarni, Vishwesh V., Kharisov, Evgeny, Hovakimyan, Naira and Kim, Jongmin (2014) Load capacity improvements in nucleic acid based systems using partially open feedback control. ACS Synthetic Biology, 3 (8). pp. 617-626. doi:10.1021/sb5000675

Lusczek, Elizabeth R., Vincent, Tyrone, Kulkarni, Vishwesh V., Mulier, Kristine and Beilman, Greg (2014) Carbohydrate prefeeding affects the metabolic response to polytrauma, hemorrhagic shock, and resuscitation in serum metabolic networks. In: International Conference on Complex Acute Illness. Published in: Journal of Critical Care, 28 (6). e35-e36. ISSN 0883-9441.